AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009794

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009794.t1 MTR_5g072570 94.894 470 24 0 1 470 1 470 0.0 940
MS.gene009794.t1 MTR_3g090130 77.564 468 100 2 1 468 1 463 0.0 767
MS.gene009794.t1 MTR_3g090150 75.316 474 107 4 1 468 1 470 0.0 744
MS.gene009794.t1 MTR_7g021130 47.926 434 217 6 30 461 31 457 1.25e-142 417
MS.gene009794.t1 MTR_8g099930 46.347 438 228 5 28 463 32 464 7.14e-140 410
MS.gene009794.t1 MTR_3g434850 46.507 458 227 7 9 461 10 454 1.16e-138 406
MS.gene009794.t1 MTR_3g498755 45.682 440 226 7 28 461 13 445 1.91e-138 405
MS.gene009794.t1 MTR_2g449850 45.642 436 224 6 31 463 39 464 2.09e-130 385
MS.gene009794.t1 MTR_7g013790 42.227 476 244 9 6 465 8 468 5.58e-124 369
MS.gene009794.t1 MTR_3g034290 44.295 447 225 8 23 465 68 494 2.75e-122 366
MS.gene009794.t1 MTR_4g089155 42.826 460 233 11 19 463 43 487 1.13e-120 362
MS.gene009794.t1 MTR_4g075150 42.398 467 245 11 7 461 9 463 2.11e-119 357
MS.gene009794.t1 MTR_4g075150 42.672 464 246 11 7 461 9 461 2.52e-119 357
MS.gene009794.t1 MTR_2g012860 43.049 446 232 7 28 462 40 474 5.97e-119 357
MS.gene009794.t1 MTR_3g079570 45.330 439 214 10 26 461 75 490 6.97e-119 357
MS.gene009794.t1 MTR_0003s0560 43.991 441 227 7 22 461 66 487 5.89e-118 355
MS.gene009794.t1 MTR_3g079590 45.161 434 215 9 26 457 74 486 7.44e-118 355
MS.gene009794.t1 MTR_2g012850 41.964 448 236 8 27 463 33 467 1.03e-115 348
MS.gene009794.t1 MTR_3g079560 43.820 445 225 9 22 463 70 492 1.32e-115 349
MS.gene009794.t1 MTR_1g040370 40.909 440 203 6 28 462 29 416 1.80e-115 346
MS.gene009794.t1 MTR_3g079600 44.222 450 226 12 22 467 68 496 5.23e-114 345
MS.gene009794.t1 MTR_1g095560 40.085 469 261 9 4 464 3 459 1.36e-111 337
MS.gene009794.t1 MTR_3g079620 42.070 454 226 12 26 467 74 502 1.63e-111 338
MS.gene009794.t1 MTR_1g021010 43.478 437 218 11 30 462 76 487 1.22e-109 333
MS.gene009794.t1 MTR_2g081620 38.462 468 268 9 9 468 15 470 1.88e-109 332
MS.gene009794.t1 MTR_3g079630 42.325 456 223 12 26 467 74 503 2.27e-109 333
MS.gene009794.t1 MTR_1g020090 43.084 441 215 11 27 461 87 497 2.98e-108 330
MS.gene009794.t1 MTR_2g062990 38.330 467 262 11 7 461 10 462 9.10e-108 328
MS.gene009794.t1 MTR_4g122950 38.351 485 254 12 9 464 12 480 9.99e-108 328
MS.gene009794.t1 MTR_2g063000 37.527 469 272 10 2 461 7 463 1.14e-107 328
MS.gene009794.t1 MTR_1g021020 43.379 438 220 10 28 462 76 488 3.16e-106 325
MS.gene009794.t1 MTR_1g095540 40.363 441 247 8 27 463 30 458 3.44e-105 321
MS.gene009794.t1 MTR_1g095560 37.525 501 261 10 4 464 3 491 1.14e-104 320
MS.gene009794.t1 MTR_2g062980 39.583 432 246 8 33 461 43 462 3.54e-103 316
MS.gene009794.t1 MTR_4g122960 37.552 482 260 13 9 464 12 478 3.89e-103 316
MS.gene009794.t1 MTR_3g034290 43.978 357 180 7 23 375 68 408 4.21e-95 293
MS.gene009794.t1 MTR_1g102130 38.565 446 228 12 28 466 90 496 1.69e-93 292
MS.gene009794.t1 MTR_2g063000 33.476 466 264 11 2 461 7 432 4.29e-87 274
MS.gene009794.t1 MTR_0003s0560 48.120 266 129 4 22 286 66 323 3.79e-80 253
MS.gene009794.t1 MTR_7g051430 32.016 506 281 13 1 457 1 492 3.95e-77 249
MS.gene009794.t1 MTR_8g011350 31.590 497 277 13 9 457 11 492 1.26e-71 235
MS.gene009794.t1 MTR_7g080180 31.953 507 281 17 6 460 4 498 1.12e-70 233
MS.gene009794.t1 MTR_8g011350 31.078 473 263 13 9 433 11 468 1.30e-63 214
MS.gene009794.t1 MTR_0075s0010 34.015 391 182 11 26 409 4 325 3.13e-59 197
MS.gene009794.t1 MTR_7g080180 31.398 465 255 17 6 418 4 456 1.06e-58 200
MS.gene009794.t1 MTR_7g051430 37.458 299 173 7 1 293 1 291 8.06e-56 191
MS.gene009794.t1 MTR_2g018630 29.374 463 285 15 18 460 25 465 5.78e-52 182
MS.gene009794.t1 MTR_2g018600 27.214 463 302 14 18 460 22 469 6.46e-49 174
MS.gene009794.t1 MTR_4g021510 29.228 479 279 19 6 456 19 465 7.23e-49 174
MS.gene009794.t1 MTR_2g018590 27.789 475 306 17 6 460 12 469 4.28e-48 172
MS.gene009794.t1 MTR_4g021535 27.579 475 300 18 2 456 12 462 1.27e-46 168
MS.gene009794.t1 MTR_4g021520 27.578 446 285 15 30 456 40 466 1.72e-46 167
MS.gene009794.t1 MTR_4g021490 27.314 443 290 15 30 456 40 466 2.17e-46 167
MS.gene009794.t1 MTR_1g050545 30.093 432 255 13 41 457 81 480 3.57e-45 165
MS.gene009794.t1 MTR_4g021530 26.622 447 288 16 30 456 40 466 6.66e-45 163
MS.gene009794.t1 MTR_4g057585 27.335 439 270 12 35 457 87 492 1.04e-43 160
MS.gene009794.t1 MTR_4g057595 27.455 448 272 13 37 468 90 500 3.04e-43 159
MS.gene009794.t1 MTR_4g021500 27.703 444 283 18 30 454 40 464 4.18e-43 163
MS.gene009794.t1 MTR_4g021500 26.196 439 287 16 36 456 482 901 1.65e-37 146
MS.gene009794.t1 MTR_4g021500 27.703 444 283 18 30 454 40 464 5.15e-43 162
MS.gene009794.t1 MTR_4g021500 26.107 429 282 15 36 456 482 883 5.00e-36 142
MS.gene009794.t1 MTR_2g095750 27.700 426 281 12 40 460 97 500 6.43e-43 159
MS.gene009794.t1 MTR_3g100420 28.200 461 287 19 28 460 52 496 2.15e-42 157
MS.gene009794.t1 MTR_2g095730 26.897 435 272 13 40 458 91 495 1.79e-40 152
MS.gene009794.t1 MTR_1g094155 27.315 432 268 12 40 457 87 486 3.59e-40 151
MS.gene009794.t1 MTR_8g007520 91.549 71 6 0 346 416 111 181 1.72e-38 138
MS.gene009794.t1 MTR_4g057570 27.400 427 278 13 41 458 87 490 4.42e-38 145
MS.gene009794.t1 MTR_3g045770 25.114 438 301 12 29 454 26 448 3.70e-37 142
MS.gene009794.t1 MTR_4g057600 27.397 438 260 13 41 458 93 492 1.01e-36 141
MS.gene009794.t1 MTR_4g021520 27.206 408 259 15 30 418 40 428 2.92e-36 139
MS.gene009794.t1 MTR_2g018630 28.177 362 225 12 113 460 20 360 5.76e-35 134
MS.gene009794.t1 MTR_4g021535 25.474 475 263 19 2 456 12 415 3.54e-32 127
MS.gene009794.t1 MTR_5g097180 25.829 422 270 12 45 455 43 432 4.70e-32 127
MS.gene009794.t1 MTR_2g009200 25.828 453 269 16 28 456 26 435 1.03e-31 126
MS.gene009794.t1 MTR_4g084710 24.886 438 270 15 37 455 37 434 6.08e-31 124
MS.gene009794.t1 MTR_2g095710 26.018 442 269 16 34 460 85 483 1.37e-26 112
MS.gene009794.t1 MTR_1g051175 52.941 85 37 2 37 120 20 102 2.84e-21 94.0
MS.gene009794.t1 MTR_7g100560 27.962 211 86 3 36 246 65 209 1.07e-19 90.1
MS.gene009794.t1 MTR_4g056520 21.839 435 266 15 61 456 55 454 2.44e-17 84.7
MS.gene009794.t1 MTR_6g086380 74.419 43 11 0 422 464 58 100 1.13e-14 70.1
MS.gene009794.t1 MTR_2g102960 82.857 35 6 0 346 380 36 70 1.39e-11 63.2
MS.gene009794.t1 MTR_2g084530 32.105 190 108 6 46 230 36 209 5.40e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009794.t1 AT5G42240 78.667 450 96 0 20 469 23 472 0.0 770
MS.gene009794.t1 AT1G43780 68.987 474 140 3 2 468 4 477 0.0 713
MS.gene009794.t1 AT5G42230 71.460 452 129 0 13 464 12 463 0.0 699
MS.gene009794.t1 AT5G42230 71.460 452 129 0 13 464 12 463 0.0 699
MS.gene009794.t1 AT2G12480 71.491 456 122 3 7 462 11 458 0.0 695
MS.gene009794.t1 AT2G12480 67.763 456 115 4 7 462 11 434 0.0 643
MS.gene009794.t1 AT2G12480 67.325 456 115 4 7 462 11 432 0.0 639
MS.gene009794.t1 AT2G12480 67.177 457 115 5 7 462 11 433 0.0 634
MS.gene009794.t1 AT2G33530 48.630 438 216 6 28 462 32 463 8.82e-148 430
MS.gene009794.t1 AT1G28110 47.836 439 216 7 28 462 30 459 3.76e-142 416
MS.gene009794.t1 AT1G28110 47.836 439 216 7 28 462 30 459 3.76e-142 416
MS.gene009794.t1 AT3G02110 44.222 450 223 8 28 462 36 472 5.47e-121 362
MS.gene009794.t1 AT3G63470 43.146 445 235 9 22 465 74 501 1.38e-119 359
MS.gene009794.t1 AT2G24010 42.986 442 231 8 27 463 28 453 3.31e-119 357
MS.gene009794.t1 AT4G30610 42.729 447 234 9 27 463 30 464 1.64e-118 355
MS.gene009794.t1 AT2G24000 42.247 445 234 8 27 460 28 460 1.23e-116 350
MS.gene009794.t1 AT4G30810 41.667 456 250 8 9 460 18 461 1.44e-115 348
MS.gene009794.t1 AT5G08260 39.917 481 256 10 5 462 7 477 2.72e-115 347
MS.gene009794.t1 AT5G23210 40.959 459 233 10 28 461 50 495 8.89e-115 347
MS.gene009794.t1 AT2G24010 41.357 457 232 9 27 463 28 468 9.70e-114 343
MS.gene009794.t1 AT1G61130 41.319 455 245 9 15 457 12 456 1.51e-112 340
MS.gene009794.t1 AT2G35770 42.664 443 233 11 26 463 34 460 5.24e-112 338
MS.gene009794.t1 AT2G35780 41.591 440 237 9 27 461 27 451 2.78e-111 336
MS.gene009794.t1 AT1G11080 40.798 451 234 9 27 457 48 485 1.06e-110 336
MS.gene009794.t1 AT1G11080 40.798 451 234 9 27 457 48 485 1.18e-110 336
MS.gene009794.t1 AT3G07990 41.176 442 244 9 26 463 30 459 1.45e-110 335
MS.gene009794.t1 AT2G24010 38.958 480 232 10 29 463 1 464 6.07e-107 325
MS.gene009794.t1 AT4G15100 39.167 480 259 9 5 463 16 483 9.50e-106 323
MS.gene009794.t1 AT2G05850 39.865 444 242 8 27 463 61 486 1.23e-103 318
MS.gene009794.t1 AT3G52020 40.271 442 241 12 27 463 77 500 4.43e-102 314
MS.gene009794.t1 AT3G17180 39.093 463 249 11 22 463 27 477 2.52e-101 311
MS.gene009794.t1 AT3G52000 38.776 441 246 9 27 463 61 481 2.87e-100 309
MS.gene009794.t1 AT5G23210 40.097 414 211 9 28 416 50 451 4.44e-98 303
MS.gene009794.t1 AT3G52010 38.514 444 247 10 27 463 62 486 5.73e-97 301
MS.gene009794.t1 AT5G23210 38.386 409 214 10 78 461 5 400 1.88e-89 278
MS.gene009794.t1 AT5G23210 38.272 405 212 10 82 461 8 399 2.65e-88 276
MS.gene009794.t1 AT2G24010 40.054 367 189 7 29 375 1 356 1.10e-84 265
MS.gene009794.t1 AT3G17180 37.260 416 228 11 22 416 27 430 5.97e-82 260
MS.gene009794.t1 AT4G12910 32.220 509 281 16 1 460 4 497 1.37e-75 246
MS.gene009794.t1 AT5G23210 36.944 360 190 9 82 416 8 355 1.41e-71 231
MS.gene009794.t1 AT3G25420 31.224 490 281 11 16 460 16 494 3.04e-69 229
MS.gene009794.t1 AT4G12910 31.478 467 256 16 1 418 4 455 4.59e-62 209
MS.gene009794.t1 AT3G56540 50.802 187 89 3 7 192 57 241 1.34e-55 186
MS.gene009794.t1 AT2G24000 35.880 301 171 7 170 460 109 397 4.08e-51 178
MS.gene009794.t1 AT2G24000 55.556 90 39 1 27 115 28 117 1.21e-25 108
MS.gene009794.t1 AT1G33540 28.062 449 294 14 29 460 28 464 6.08e-51 179
MS.gene009794.t1 AT1G73300 29.213 445 267 15 29 460 32 441 6.50e-51 179
MS.gene009794.t1 AT1G73300 29.213 445 267 15 29 460 32 441 6.50e-51 179
MS.gene009794.t1 AT1G33540 28.140 430 281 13 47 460 4 421 6.18e-50 176
MS.gene009794.t1 AT2G22920 28.475 446 271 16 29 460 24 435 2.17e-49 175
MS.gene009794.t1 AT5G09640 28.571 462 278 16 29 460 26 465 5.70e-49 174
MS.gene009794.t1 AT1G73270 28.733 442 273 15 29 460 32 441 6.71e-49 174
MS.gene009794.t1 AT1G73270 28.733 442 273 15 29 460 32 441 8.85e-49 173
MS.gene009794.t1 AT1G73280 29.140 477 285 18 1 460 1 441 1.05e-48 173
MS.gene009794.t1 AT2G22980 27.803 446 268 15 29 460 25 430 1.13e-48 172
MS.gene009794.t1 AT5G36180 28.090 445 272 14 29 460 32 441 1.23e-48 173
MS.gene009794.t1 AT1G73290 28.054 442 274 14 29 460 31 438 3.34e-47 169
MS.gene009794.t1 AT1G73310 27.314 443 278 14 29 460 32 441 5.65e-47 168
MS.gene009794.t1 AT2G23000 27.828 442 281 15 29 460 24 437 6.81e-47 168
MS.gene009794.t1 AT2G23000 27.828 442 281 15 29 460 24 437 6.81e-47 168
MS.gene009794.t1 AT2G22990 27.578 446 275 16 29 460 22 433 8.11e-47 168
MS.gene009794.t1 AT2G23010 28.541 466 287 17 10 460 3 437 8.28e-47 168
MS.gene009794.t1 AT2G23010 28.326 466 288 17 10 460 3 437 2.41e-46 167
MS.gene009794.t1 AT2G22970 28.153 444 273 15 29 460 24 433 5.85e-46 166
MS.gene009794.t1 AT5G22980 28.505 428 269 12 40 458 95 494 1.58e-45 166
MS.gene009794.t1 AT3G12240 28.731 449 264 17 29 460 27 436 1.83e-45 164
MS.gene009794.t1 AT2G22980 28.029 421 250 14 29 435 25 406 3.13e-45 163
MS.gene009794.t1 AT3G45010 28.924 446 275 13 35 467 92 508 3.59e-45 165
MS.gene009794.t1 AT3G12230 28.571 448 266 16 29 460 26 435 6.65e-45 162
MS.gene009794.t1 AT2G22980 28.095 420 249 14 29 434 25 405 8.26e-45 162
MS.gene009794.t1 AT3G10450 28.090 445 272 15 29 460 28 437 1.28e-44 162
MS.gene009794.t1 AT3G12220 28.027 446 271 16 29 460 26 435 8.51e-44 160
MS.gene009794.t1 AT3G12203 26.991 452 295 11 15 460 15 437 1.94e-43 159
MS.gene009794.t1 AT3G12203 27.419 434 280 11 33 460 12 416 1.98e-43 158
MS.gene009794.t1 AT3G10450 27.700 426 261 14 47 460 4 394 1.01e-42 155
MS.gene009794.t1 AT3G12220 28.103 427 258 15 47 460 15 405 1.97e-42 155
MS.gene009794.t1 AT2G22990 27.619 420 257 15 29 434 22 408 2.89e-42 155
MS.gene009794.t1 AT2G22990 27.553 421 258 15 29 435 22 409 3.98e-42 155
MS.gene009794.t1 AT2G22970 28.162 419 256 14 29 435 24 409 9.45e-42 154
MS.gene009794.t1 AT3G12203 27.451 408 262 10 58 460 1 379 3.08e-41 151
MS.gene009794.t1 AT2G22970 28.230 418 255 14 29 434 24 408 3.70e-41 152
MS.gene009794.t1 AT2G22990 26.906 446 269 17 29 460 22 424 9.03e-41 151
MS.gene009794.t1 AT3G10450 28.095 420 255 14 29 435 28 413 2.85e-40 150
MS.gene009794.t1 AT2G22920 27.427 412 238 15 29 419 24 395 1.35e-39 147
MS.gene009794.t1 AT3G10410 27.703 444 275 13 35 464 90 501 1.85e-39 149
MS.gene009794.t1 AT3G10450 27.681 401 244 13 47 435 4 370 2.14e-38 144
MS.gene009794.t1 AT1G73310 26.368 402 253 13 29 419 32 401 6.60e-37 140
MS.gene009794.t1 AT1G73290 26.933 401 250 13 29 419 31 398 7.76e-37 140
MS.gene009794.t1 AT1G73280 31.438 299 183 10 1 286 1 290 8.65e-35 134
MS.gene009794.t1 AT2G22920 30.970 268 166 9 29 286 24 282 3.94e-34 130
MS.gene009794.t1 AT1G73290 32.743 226 137 6 29 244 31 251 2.61e-32 125
MS.gene009794.t1 AT2G22980 30.597 268 164 9 29 286 25 280 1.13e-31 124
MS.gene009794.t1 AT5G36180 26.331 357 222 11 111 460 17 339 1.14e-31 124
MS.gene009794.t1 AT5G36180 26.331 357 222 11 111 460 17 339 1.14e-31 124
MS.gene009794.t1 AT1G73280 27.171 357 219 12 111 460 17 339 1.44e-31 124
MS.gene009794.t1 AT2G22970 32.917 240 146 7 29 259 24 257 4.03e-31 122
MS.gene009794.t1 AT1G15000 35.912 181 109 3 37 214 29 205 6.41e-29 119
MS.gene009794.t1 AT1G73280 26.724 348 214 12 120 460 1 314 1.90e-28 115
MS.gene009794.t1 AT2G22990 25.641 351 220 13 118 460 2 319 4.35e-28 114
MS.gene009794.t1 AT2G22990 25.356 351 221 13 118 460 2 319 2.01e-27 112
MS.gene009794.t1 AT2G22980 25.767 326 196 11 118 435 2 289 3.75e-27 110
MS.gene009794.t1 AT5G36180 25.904 332 206 10 111 435 17 315 6.72e-27 110
MS.gene009794.t1 AT3G12220 30.734 218 136 6 29 236 26 238 2.44e-25 107
MS.gene009794.t1 AT5G22960 30.857 175 99 3 35 208 25 178 3.75e-24 99.8
MS.gene009794.t1 AT1G73310 24.841 314 200 10 111 419 17 299 2.25e-22 98.2
MS.gene009794.t1 AT5G36180 25.397 315 195 10 111 418 17 298 1.81e-21 95.9
MS.gene009794.t1 AT2G27920 26.792 265 149 9 42 284 33 274 4.54e-19 90.1
MS.gene009794.t1 AT2G22920 25.850 294 163 13 182 460 3 256 1.65e-17 82.4
MS.gene009794.t1 AT2G27920 27.461 193 117 6 83 273 4 175 1.29e-12 69.7

Find 113 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCTCACTCTTTGGCTTAA+TGG 0.090755 5.3:-57341932 MS.gene009794:CDS
GAAACTTCTCGAACCATTTC+AGG 0.181933 5.3:+57340790 None:intergenic
GAGCACCATATGATTATTTC+TGG 0.211487 5.3:-57340149 MS.gene009794:CDS
TCTCAATTCTTGTTCAACTA+TGG 0.261897 5.3:+57339942 None:intergenic
TTCAAAACCGTATTCCAGTA+TGG 0.267358 5.3:-57339342 MS.gene009794:CDS
AAAATAAACCCCTCACTCTT+TGG 0.284368 5.3:-57341940 MS.gene009794:CDS
AGGAGGTGCCTTTACTGAAT+TGG 0.300382 5.3:-57341251 MS.gene009794:CDS
GGAATGATTTCAGATGAAAT+TGG 0.326242 5.3:-57340120 MS.gene009794:CDS
TCCAGAGCGTTGTTTCTTAC+CGG 0.327019 5.3:-57340756 MS.gene009794:CDS
GATCTGGTTGTTAGTCTTCC+AGG 0.337856 5.3:-57342067 MS.gene009794:CDS
TATTGACTGAATTCAACTTT+AGG 0.341208 5.3:+57342040 None:intergenic
CTCTTTATTGAGTCTCCTGC+TGG 0.357375 5.3:-57341039 MS.gene009794:CDS
TGCTTTCGTTCTTCCTGAAA+TGG 0.362996 5.3:-57340803 MS.gene009794:CDS
GGAGGTTGGGCAACTGAGTA+TGG 0.366756 5.3:-57338588 MS.gene009794:CDS
GGAGGTGCCTTTACTGAATT+GGG 0.367283 5.3:-57341250 MS.gene009794:CDS
GGACTGTAATCTTGAACTTC+AGG 0.367870 5.3:+57338960 None:intergenic
ATTGGAAGCATATTAATGTT+AGG 0.368350 5.3:+57339379 None:intergenic
TGAACAATCCGTTTGAGAAT+TGG 0.369737 5.3:+57339361 None:intergenic
GATTCCGTTGTGCCATTACT+AGG 0.370360 5.3:-57339016 MS.gene009794:CDS
AAATAATTACCTGGCCTTTG+TGG 0.380863 5.3:+57338921 None:intergenic
CTAACAACCAGATCCTCAAT+AGG 0.380884 5.3:+57342076 None:intergenic
CTCGTCACCGATGTTGTAAT+CGG 0.389457 5.3:+57340987 None:intergenic
TTTCAAATTGAACTTGTAAC+CGG 0.392444 5.3:+57340325 None:intergenic
AAAATTGATACCTCTATTCC+AGG 0.400614 5.3:+57341177 None:intergenic
GCTCTAGAAGGTTGTGCATA+TGG 0.402187 5.3:+57338519 None:intergenic
AAACAACGCTCTGGATTTGT+AGG 0.402525 5.3:+57340764 None:intergenic
CCTGGTTGTTCTTCCGTTGG+AGG 0.405009 5.3:-57341271 MS.gene009794:CDS
AGGGTACCCTATTGAGGATC+TGG 0.409525 5.3:-57342083 MS.gene009794:CDS
ACAACAAGACCTTCAATTGA+TGG 0.411072 5.3:-57338450 MS.gene009794:CDS
GTACCAACTTGCCGTATTCA+TGG 0.415219 5.3:-57339711 MS.gene009794:CDS
ATTGAAGGTCTTGTTGTGTT+TGG 0.428205 5.3:+57338456 None:intergenic
GTAATGGCACAACGGAATCT+TGG 0.430159 5.3:+57339020 None:intergenic
CTTTGCAATCTGCTAGTTCA+AGG 0.430603 5.3:-57342103 MS.gene009794:CDS
TTTATTCATCCATCAATTGA+AGG 0.432413 5.3:+57338441 None:intergenic
TCGAACGCTCATTCGTGAAC+TGG 0.435177 5.3:-57338990 MS.gene009794:CDS
AGACTCAATAAAGAGAAGAT+TGG 0.442329 5.3:+57341047 None:intergenic
AATTACCTGAAAACCCATAC+TGG 0.452422 5.3:+57339328 None:intergenic
CAACCTCCCTGAGGTTCAAA+AGG 0.453733 5.3:-57339749 MS.gene009794:CDS
TTGTGGAACCAAGCTCCATA+TGG 0.454668 5.3:+57338938 None:intergenic
GGTCCTGGTTGTTCTTCCGT+TGG 0.459552 5.3:-57341274 MS.gene009794:CDS
AACAGATGCAGTGCTCTAGA+AGG 0.459934 5.3:+57338507 None:intergenic
TACGAAAGAATTCAATGTCC+TGG 0.463993 5.3:-57341195 MS.gene009794:CDS
GTTAACTTTCGCCACCGTGC+GGG 0.467382 5.3:-57338559 MS.gene009794:CDS
ATTGAGTCTCCTGCTGGAGT+TGG 0.467432 5.3:-57341033 MS.gene009794:CDS
ATATGCTTCCAATTCTCAAA+CGG 0.470413 5.3:-57339369 MS.gene009794:CDS
CTGCACATGGACCATGAATA+CGG 0.472089 5.3:+57339700 None:intergenic
CAGGCTACTAAAATAAGTAT+AGG 0.472450 5.3:-57339811 MS.gene009794:CDS
AATTCAATGTCCTGGAATAG+AGG 0.472547 5.3:-57341187 MS.gene009794:intron
TTCAAGATTACAGTCCCATA+TGG 0.472759 5.3:-57338953 MS.gene009794:CDS
CTATGTGTAGGTTGGAGGTT+GGG 0.476731 5.3:-57338601 MS.gene009794:intron
AATTCTTGTTCAACTATGGA+TGG 0.481844 5.3:+57339946 None:intergenic
CTGTTCAGTAACTTTGTGAA+TGG 0.483667 5.3:-57338489 MS.gene009794:CDS
TGGACCTGCATAGCTTTCTC+CGG 0.483807 5.3:+57340737 None:intergenic
CATGATGCAGATACATTATG+AGG 0.484701 5.3:+57340048 None:intergenic
AACTAGCAGATTGCAAAGAT+AGG 0.487129 5.3:+57342108 None:intergenic
GAATTACAATGGCACAGTAT+TGG 0.487226 5.3:-57342156 None:intergenic
GAAGAACGAAAGCATATCAT+TGG 0.488029 5.3:+57340812 None:intergenic
AGTGATGCAAATGAAGTTGT+CGG 0.492780 5.3:-57340012 MS.gene009794:CDS
TCCGGTAAGAAACAACGCTC+TGG 0.495399 5.3:+57340755 None:intergenic
TGTGACCAGAAATAATCATA+TGG 0.497544 5.3:+57340144 None:intergenic
TCAGTAACTTTGTGAATGGT+AGG 0.501716 5.3:-57338485 MS.gene009794:CDS
GGTTGTTCTTCCGTTGGAGG+AGG 0.506091 5.3:-57341268 MS.gene009794:CDS
CCATCACCAGTAGGATAAAA+CGG 0.509390 5.3:+57341226 None:intergenic
TGAAAACCCATACTGGAATA+CGG 0.509668 5.3:+57339335 None:intergenic
TCAAAACCGTATTCCAGTAT+GGG 0.511117 5.3:-57339341 MS.gene009794:CDS
GGTTACAAGTTCAATTTGAA+AGG 0.512302 5.3:-57340323 MS.gene009794:CDS
GTTGAATTCAGTCAATATGC+TGG 0.514110 5.3:-57342034 MS.gene009794:CDS
TCCATTAAGCCAAAGAGTGA+GGG 0.516289 5.3:+57341931 None:intergenic
TTACAGTCCCATATGGAGCT+TGG 0.523649 5.3:-57338946 MS.gene009794:CDS
CTTACCGGAGAAAGCTATGC+AGG 0.524600 5.3:-57340741 MS.gene009794:intron
GTTGATATTGATGTAAATCA+TGG 0.524644 5.3:-57342007 MS.gene009794:CDS
TGTGGAACCAAGCTCCATAT+GGG 0.530718 5.3:+57338939 None:intergenic
TAACAACCAGATCCTCAATA+GGG 0.533256 5.3:+57342077 None:intergenic
CATATCTATGTGTAGGTTGG+AGG 0.535597 5.3:-57338606 MS.gene009794:intron
TATCCTACTGGTGATGGACG+TGG 0.538754 5.3:-57341220 MS.gene009794:CDS
AGTCTCCTGCTGGAGTTGGT+TGG 0.541071 5.3:-57341029 MS.gene009794:CDS
TTAACTTTCGCCACCGTGCG+GGG 0.550282 5.3:-57338558 MS.gene009794:CDS
AGTTCAAGGGTACCCTATTG+AGG 0.551760 5.3:-57342089 MS.gene009794:CDS
TTATACTTACCCACTGCACA+TGG 0.557753 5.3:+57339687 None:intergenic
GCAAGTTGGTACGGTTCGCA+TGG 0.558199 5.3:+57339722 None:intergenic
TTTGCAATCTGCTAGTTCAA+GGG 0.559131 5.3:-57342102 MS.gene009794:CDS
TCTATGTGTAGGTTGGAGGT+TGG 0.559649 5.3:-57338602 MS.gene009794:intron
AACTTCATTTGCATCACTGA+TGG 0.561383 5.3:+57340017 None:intergenic
TATGACCAACCAACTCCAGC+AGG 0.564584 5.3:+57341024 None:intergenic
TATTCATGGTCCATGTGCAG+TGG 0.566051 5.3:-57339697 MS.gene009794:CDS
CTCGATCCAGATTCAAAAGT+GGG 0.567933 5.3:+57340178 None:intergenic
CGTGCGGGGTGCATCTCACA+TGG 0.568257 5.3:-57338544 MS.gene009794:CDS
AATTCAACTTTAGGTTGACC+TGG 0.576320 5.3:+57342049 None:intergenic
AAACGGACCCAATTCAGTAA+AGG 0.578441 5.3:+57341243 None:intergenic
AGCTTGGTTCCACAAAGGCC+AGG 0.580658 5.3:-57338930 MS.gene009794:intron
ATGAATACGGCAAGTTGGTA+CGG 0.581357 5.3:+57339713 None:intergenic
CTCCATTAAGCCAAAGAGTG+AGG 0.581909 5.3:+57341930 None:intergenic
CGATTACAACATCGGTGACG+AGG 0.590138 5.3:-57340986 MS.gene009794:CDS
TCTCGATCCAGATTCAAAAG+TGG 0.599175 5.3:+57340177 None:intergenic
TATGATTATTTCTGGTCACA+TGG 0.601807 5.3:-57340141 MS.gene009794:CDS
CTCACTCTTTGGCTTAATGG+AGG 0.603231 5.3:-57341929 MS.gene009794:intron
CCTCCAACGGAAGAACAACC+AGG 0.604280 5.3:+57341271 None:intergenic
GGACCATGAATACGGCAAGT+TGG 0.604501 5.3:+57339708 None:intergenic
AGTAAAGGCACCTCCTCCAA+CGG 0.608931 5.3:+57341258 None:intergenic
TACATTATGAGGAGATGCGA+AGG 0.615123 5.3:+57340059 None:intergenic
ATTCATGGTCCATGTGCAGT+GGG 0.615927 5.3:-57339696 MS.gene009794:intron
TGTTAACTTTCGCCACCGTG+CGG 0.616872 5.3:-57338560 MS.gene009794:CDS
AACGCTCTGGATTTGTAGGT+AGG 0.617990 5.3:+57340768 None:intergenic
ACAACTTCCGATTACAACAT+CGG 0.619469 5.3:-57340994 MS.gene009794:CDS
AACATCGGTGACGAGGCCAC+AGG 0.633390 5.3:-57340979 MS.gene009794:intron
CCATTAAGCCAAAGAGTGAG+GGG 0.635706 5.3:+57341932 None:intergenic
AGCGTTCGAGAACCTAGTAA+TGG 0.641706 5.3:+57339004 None:intergenic
AGAATAGCATTAGCTAACTG+AGG 0.658804 5.3:+57340368 None:intergenic
CATGTGAGATGCACCCCGCA+CGG 0.659786 5.3:+57338545 None:intergenic
ACACCACGTCCATCACCAGT+AGG 0.679633 5.3:+57341217 None:intergenic
TATGGAGCTTGGTTCCACAA+AGG 0.680414 5.3:-57338935 MS.gene009794:CDS
GTGAGATGCACCCCGCACGG+TGG 0.715495 5.3:+57338548 None:intergenic
AGAACCTAGTAATGGCACAA+CGG 0.721630 5.3:+57339012 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAATAATTAAAATT+GGG + chr5.3:57339902-57339921 None:intergenic 0.0%
!!! ACTTTTAATTTTGATTATTA+TGG - chr5.3:57338722-57338741 MS.gene009794:intron 10.0%
!!! TAGTTTTATTTTTTGTAAAT+CGG - chr5.3:57339206-57339225 MS.gene009794:intron 10.0%
!!! TTTTTTTTTTTTTGTATGTT+TGG - chr5.3:57338802-57338821 MS.gene009794:intron 10.0%
!! AAGTTAGTTATAAATTAGTT+AGG - chr5.3:57341378-57341397 MS.gene009794:intron 15.0%
!! AATATAAGATATCATATGAA+TGG + chr5.3:57340312-57340331 None:intergenic 15.0%
!! AGATAATAAAAATAGAAAAG+AGG + chr5.3:57340126-57340145 None:intergenic 15.0%
!! ATACTTTATAATGTTTATTC+AGG - chr5.3:57340193-57340212 MS.gene009794:intron 15.0%
!! ATATAAGATATCATATGAAT+GGG + chr5.3:57340311-57340330 None:intergenic 15.0%
!! ATTGATATTAGAGAATAATT+TGG - chr5.3:57339470-57339489 MS.gene009794:intron 15.0%
!! GAATAAACATTATAAAGTAT+TGG + chr5.3:57340193-57340212 None:intergenic 15.0%
!! GATAAAGTATAGTATTTATA+GGG + chr5.3:57341412-57341431 None:intergenic 15.0%
!! GTAAACACAATATTAAAATA+AGG + chr5.3:57339511-57339530 None:intergenic 15.0%
!! TGATAAAGTATAGTATTTAT+AGG + chr5.3:57341413-57341432 None:intergenic 15.0%
!! TTCATATGATATCTTATATT+TGG - chr5.3:57340312-57340331 MS.gene009794:intron 15.0%
!! TTGATATTAGAGAATAATTT+GGG - chr5.3:57339471-57339490 MS.gene009794:intron 15.0%
!!! ATAATCCTTTAATTTGTTTT+TGG - chr5.3:57339756-57339775 MS.gene009794:CDS 15.0%
!! AACTGTTAAAAATAATTACC+TGG + chr5.3:57341685-57341704 None:intergenic 20.0%
!! AGTGTTTAATTAAGAAATCT+GGG - chr5.3:57340341-57340360 MS.gene009794:CDS 20.0%
!! GTATAAATTAAATAGCCAAT+TGG + chr5.3:57341309-57341328 None:intergenic 20.0%
!! TAAAATTCAAATTGCATGTT+TGG + chr5.3:57338922-57338941 None:intergenic 20.0%
!! TAGTATAATAGAAATGAAAG+AGG + chr5.3:57340701-57340720 None:intergenic 20.0%
!! TTAGTTATAAATTAGTTAGG+TGG - chr5.3:57341381-57341400 MS.gene009794:intron 20.0%
!!! AGTAACTTTGTTAATTTTTC+AGG - chr5.3:57339299-57339318 MS.gene009794:intron 20.0%
!!! GGTATCAATTTTGTTTATTA+TGG - chr5.3:57339428-57339447 MS.gene009794:intron 20.0%
!!! TTTGTTAGTTTTATAATGCA+TGG - chr5.3:57339731-57339750 MS.gene009794:CDS 20.0%
!!! TTTTACATGTTGTTATCTTT+TGG - chr5.3:57338937-57338956 MS.gene009794:CDS 20.0%
!!! TTTTATTTTTTGTAAATCGG+CGG - chr5.3:57339209-57339228 MS.gene009794:intron 20.0%
! AAAATTGTTCATGAGAACAA+AGG + chr5.3:57340160-57340179 None:intergenic 25.0%
! AGAAATGATCAATAGAGATT+TGG + chr5.3:57341494-57341513 None:intergenic 25.0%
! AGAATTGAGATTGAAAAAGA+TGG - chr5.3:57340665-57340684 MS.gene009794:intron 25.0%
! AGTATAGCATCTTTCATATA+AGG + chr5.3:57339168-57339187 None:intergenic 25.0%
! ATAACCATACTATAGAATAC+TGG + chr5.3:57341738-57341757 None:intergenic 25.0%
! ATATTTCGAAATGCAGAAAA+TGG + chr5.3:57341711-57341730 None:intergenic 25.0%
! GAGTGTTTAATTAAGAAATC+TGG - chr5.3:57340340-57340359 MS.gene009794:CDS 25.0%
! GTGTTAAATTATTATGACAG+TGG - chr5.3:57341548-57341567 MS.gene009794:intron 25.0%
! GTTGATATTGATGTAAATCA+TGG - chr5.3:57338587-57338606 MS.gene009794:CDS 25.0%
! TGTCGCTAATAATAGTTTAT+GGG + chr5.3:57340950-57340969 None:intergenic 25.0%
! TTTCAAATTGAACTTGTAAC+CGG + chr5.3:57340272-57340291 None:intergenic 25.0%
!! AAGATGATATCTCTAGTTTA+TGG + chr5.3:57340981-57341000 None:intergenic 25.0%
!! AGATGATATCTCTAGTTTAT+GGG + chr5.3:57340980-57340999 None:intergenic 25.0%
!! ATTGGAAGCATATTAATGTT+AGG + chr5.3:57341218-57341237 None:intergenic 25.0%
!! TATTGACTGAATTCAACTTT+AGG + chr5.3:57338557-57338576 None:intergenic 25.0%
!! TTTTTGTATGTTTGGATTGA+CGG - chr5.3:57338810-57338829 MS.gene009794:intron 25.0%
!!! ATGATTAGCTTCTTAGTAAT+CGG + chr5.3:57341528-57341547 None:intergenic 25.0%
!!! CAGTTATTTTCTACAATTCT+TGG - chr5.3:57341925-57341944 MS.gene009794:intron 25.0%
AAAATTGATACCTCTATTCC+AGG + chr5.3:57339420-57339439 None:intergenic 30.0%
AAAGTTTAAATCAGTACCTG+TGG + chr5.3:57339634-57339653 None:intergenic 30.0%
AAGTCCAGTATTCTATAGTA+TGG - chr5.3:57341731-57341750 MS.gene009794:intron 30.0%
AATTCTTGTTCAACTATGGA+TGG + chr5.3:57340651-57340670 None:intergenic 30.0%
ACAACACAATCTGAATTTGT+AGG + chr5.3:57339027-57339046 None:intergenic 30.0%
AGACTCAATAAAGAGAAGAT+TGG + chr5.3:57339550-57339569 None:intergenic 30.0%
ATATGCTTCCAATTCTCAAA+CGG - chr5.3:57341225-57341244 MS.gene009794:CDS 30.0%
CAAATTCAAATCCTGTTACA+AGG - chr5.3:57339241-57339260 MS.gene009794:intron 30.0%
CAACACAATCTGAATTTGTA+GGG + chr5.3:57339026-57339045 None:intergenic 30.0%
CAGGCTACTAAAATAAGTAT+AGG - chr5.3:57340783-57340802 MS.gene009794:CDS 30.0%
GCATCTTTCATATAAGGTAA+AGG + chr5.3:57339162-57339181 None:intergenic 30.0%
GGAATGATTTCAGATGAAAT+TGG - chr5.3:57340474-57340493 MS.gene009794:intron 30.0%
GGTTACAAGTTCAATTTGAA+AGG - chr5.3:57340271-57340290 MS.gene009794:intron 30.0%
GTTTCGAAATTCTCAAAAGT+TGG - chr5.3:57339923-57339942 MS.gene009794:intron 30.0%
TCGAACAAAATCAACATGTA+AGG + chr5.3:57341037-57341056 None:intergenic 30.0%
TCTCAATTCTTGTTCAACTA+TGG + chr5.3:57340655-57340674 None:intergenic 30.0%
TGCATAAAGAATACAATACG+AGG + chr5.3:57340008-57340027 None:intergenic 30.0%
TGTGACCAGAAATAATCATA+TGG + chr5.3:57340453-57340472 None:intergenic 30.0%
TTATGAGATACGCTATTTAG+CGG - chr5.3:57341868-57341887 MS.gene009794:intron 30.0%
TTGATTGCATATCTATGTGT+AGG - chr5.3:57341981-57342000 MS.gene009794:CDS 30.0%
TTTCAACAAAAGAGACCAAT+TGG - chr5.3:57341291-57341310 MS.gene009794:intron 30.0%
TTTGACAAGAACAGAATCTA+TGG - chr5.3:57339081-57339100 MS.gene009794:intron 30.0%
! AAAATCGCAGTCTTTTGTAA+TGG + chr5.3:57340505-57340524 None:intergenic 30.0%
! GATCTGATTAATGTGTCTTT+TGG + chr5.3:57339880-57339899 None:intergenic 30.0%
! GTGTCGCTAATAATAGTTTA+TGG + chr5.3:57340951-57340970 None:intergenic 30.0%
! TGTAACTTTTGTCTAAATCG+CGG - chr5.3:57338869-57338888 MS.gene009794:intron 30.0%
!! GATTTTAATGCTCATTCAAC+CGG - chr5.3:57340250-57340269 MS.gene009794:intron 30.0%
!! TATGATTATTTCTGGTCACA+TGG - chr5.3:57340453-57340472 MS.gene009794:intron 30.0%
!!! GTAATCTAAGCTTTTTTCTC+TGG - chr5.3:57340376-57340395 MS.gene009794:CDS 30.0%
!!! TTTGTTAATTTTTCAGGTCC+TGG - chr5.3:57339305-57339324 MS.gene009794:intron 30.0%
AAAACTTGTAAGGAGTCGTT+CGG + chr5.3:57341455-57341474 None:intergenic 35.0%
AAAATAAACCCCTCACTCTT+TGG - chr5.3:57338654-57338673 MS.gene009794:intron 35.0%
AACTAGCAGATTGCAAAGAT+AGG + chr5.3:57338489-57338508 None:intergenic 35.0%
AACTTCATTTGCATCACTGA+TGG + chr5.3:57340580-57340599 None:intergenic 35.0%
AATATCCCAGTTAGCAATGA+TGG + chr5.3:57340048-57340067 None:intergenic 35.0%
AATTACCTGAAAACCCATAC+TGG + chr5.3:57341269-57341288 None:intergenic 35.0%
AATTCAATGTCCTGGAATAG+AGG - chr5.3:57339407-57339426 MS.gene009794:CDS 35.0%
ACAACAAGACCTTCAATTGA+TGG - chr5.3:57342144-57342163 MS.gene009794:CDS 35.0%
ACAACTTCCGATTACAACAT+CGG - chr5.3:57339600-57339619 MS.gene009794:intron 35.0%
AGAATAGCATTAGCTAACTG+AGG + chr5.3:57340229-57340248 None:intergenic 35.0%
AGTGATGCAAATGAAGTTGT+CGG - chr5.3:57340582-57340601 MS.gene009794:intron 35.0%
CATGATGCAGATACATTATG+AGG + chr5.3:57340549-57340568 None:intergenic 35.0%
CTGTTCAGTAACTTTGTGAA+TGG - chr5.3:57342105-57342124 MS.gene009794:CDS 35.0%
GAGAGTGAGTAAAACTTGTA+AGG + chr5.3:57341465-57341484 None:intergenic 35.0%
GAGCACCATATGATTATTTC+TGG - chr5.3:57340445-57340464 MS.gene009794:intron 35.0%
GGCTGCCAAAAACAAATTAA+AGG + chr5.3:57339764-57339783 None:intergenic 35.0%
GTTGAATTCAGTCAATATGC+TGG - chr5.3:57338560-57338579 MS.gene009794:CDS 35.0%
TAACAACCAGATCCTCAATA+GGG + chr5.3:57338520-57338539 None:intergenic 35.0%
TACGAAAGAATTCAATGTCC+TGG - chr5.3:57339399-57339418 MS.gene009794:CDS 35.0%
TCAAAACCGTATTCCAGTAT+GGG - chr5.3:57341253-57341272 MS.gene009794:CDS 35.0%
TCAGTAACTTTGTGAATGGT+AGG - chr5.3:57342109-57342128 MS.gene009794:CDS 35.0%
TCGTCACTGTTGTCAAATAA+AGG - chr5.3:57341799-57341818 MS.gene009794:intron 35.0%
TGAAAACCCATACTGGAATA+CGG + chr5.3:57341262-57341281 None:intergenic 35.0%
TGAACAATCCGTTTGAGAAT+TGG + chr5.3:57341236-57341255 None:intergenic 35.0%
TTCAAAACCGTATTCCAGTA+TGG - chr5.3:57341252-57341271 MS.gene009794:CDS 35.0%
TTCAAGATTACAGTCCCATA+TGG - chr5.3:57341641-57341660 MS.gene009794:intron 35.0%
TTGCATATCTATGTGTAGGT+TGG - chr5.3:57341985-57342004 MS.gene009794:CDS 35.0%
TTTGCAATCTGCTAGTTCAA+GGG - chr5.3:57338492-57338511 MS.gene009794:CDS 35.0%
! AAATAATTACCTGGCCTTTG+TGG + chr5.3:57341676-57341695 None:intergenic 35.0%
! ACTCCAGTTTTCCAAATCAA+CGG - chr5.3:57341770-57341789 MS.gene009794:intron 35.0%
! ATTAGCTTCTTAGTAATCGG+AGG + chr5.3:57341525-57341544 None:intergenic 35.0%
! GAAGAACGAAAGCATATCAT+TGG + chr5.3:57339785-57339804 None:intergenic 35.0%
! TACAAGTTTTACTCACTCTC+AGG - chr5.3:57341465-57341484 MS.gene009794:intron 35.0%
!! AATTCAACTTTAGGTTGACC+TGG + chr5.3:57338548-57338567 None:intergenic 35.0%
!! ATTGAAGGTCTTGTTGTGTT+TGG + chr5.3:57342141-57342160 None:intergenic 35.0%
!! TTTCTCTGGCTTTGTTAGAT+TGG - chr5.3:57340390-57340409 MS.gene009794:intron 35.0%
AAACGGACCCAATTCAGTAA+AGG + chr5.3:57339354-57339373 None:intergenic 40.0%
AGAACCTAGTAATGGCACAA+CGG + chr5.3:57341585-57341604 None:intergenic 40.0%
CCATCACCAGTAGGATAAAA+CGG + chr5.3:57339371-57339390 None:intergenic 40.0%
CGGTGAGTTTACCAAATTCA+CGG - chr5.3:57338830-57338849 MS.gene009794:intron 40.0%
CTAACAACCAGATCCTCAAT+AGG + chr5.3:57338521-57338540 None:intergenic 40.0%
CTATGCCATCATTGCTAACT+GGG - chr5.3:57340040-57340059 MS.gene009794:CDS 40.0%
CTCGATCCAGATTCAAAAGT+GGG + chr5.3:57340419-57340438 None:intergenic 40.0%
CTTTGCAATCTGCTAGTTCA+AGG - chr5.3:57338491-57338510 MS.gene009794:CDS 40.0%
GAAACTTCTCGAACCATTTC+AGG + chr5.3:57339807-57339826 None:intergenic 40.0%
GGACTGTAATCTTGAACTTC+AGG + chr5.3:57341637-57341656 None:intergenic 40.0%
TACATTATGAGGAGATGCGA+AGG + chr5.3:57340538-57340557 None:intergenic 40.0%
TCACAGTACAACCGTGAATT+TGG + chr5.3:57338844-57338863 None:intergenic 40.0%
TCCATTAAGCCAAAGAGTGA+GGG + chr5.3:57338666-57338685 None:intergenic 40.0%
TCTCGATCCAGATTCAAAAG+TGG + chr5.3:57340420-57340439 None:intergenic 40.0%
TGCTTTCGTTCTTCCTGAAA+TGG - chr5.3:57339791-57339810 MS.gene009794:CDS 40.0%
TTATACTTACCCACTGCACA+TGG + chr5.3:57340910-57340929 None:intergenic 40.0%
TTCGTCTATTTCGTTACTGC+AGG - chr5.3:57340764-57340783 MS.gene009794:CDS 40.0%
! AAACAACGCTCTGGATTTGT+AGG + chr5.3:57339833-57339852 None:intergenic 40.0%
! AACTTTTGTCTAAATCGCGG+TGG - chr5.3:57338872-57338891 MS.gene009794:intron 40.0%
! ATTTTACTTCAACCTCCCTG+AGG - chr5.3:57340836-57340855 MS.gene009794:intron 40.0%
! CAGATTATGAGCCTTGTAAC+AGG + chr5.3:57339255-57339274 None:intergenic 40.0%
! CATATCTATGTGTAGGTTGG+AGG - chr5.3:57341988-57342007 MS.gene009794:CDS 40.0%
! GCTACAACATTGTAGCTTTG+CGG - chr5.3:57341892-57341911 MS.gene009794:intron 40.0%
! GTATTCCAGTATGGGTTTTC+AGG - chr5.3:57341261-57341280 MS.gene009794:CDS 40.0%
!! ATGAATACGGCAAGTTGGTA+CGG + chr5.3:57340884-57340903 None:intergenic 40.0%
!!! AGAGTGAGGGGTTTATTTTG+AGG + chr5.3:57338653-57338672 None:intergenic 40.0%
AGCGTTCGAGAACCTAGTAA+TGG + chr5.3:57341593-57341612 None:intergenic 45.0%
ATAGTGACGCTAATGCGTAG+TGG - chr5.3:57341824-57341843 MS.gene009794:intron 45.0%
ATTCATGGTCCATGTGCAGT+GGG - chr5.3:57340898-57340917 MS.gene009794:intron 45.0%
CCAGTTAGCAATGATGGCAT+AGG + chr5.3:57340042-57340061 None:intergenic 45.0%
CCATTAAGCCAAAGAGTGAG+GGG + chr5.3:57338665-57338684 None:intergenic 45.0%
CCTATGCCATCATTGCTAAC+TGG - chr5.3:57340039-57340058 MS.gene009794:CDS 45.0%
CTCCATTAAGCCAAAGAGTG+AGG + chr5.3:57338667-57338686 None:intergenic 45.0%
CTCGTCACCGATGTTGTAAT+CGG + chr5.3:57339610-57339629 None:intergenic 45.0%
CTCTTTATTGAGTCTCCTGC+TGG - chr5.3:57339555-57339574 MS.gene009794:intron 45.0%
CTGCACATGGACCATGAATA+CGG + chr5.3:57340897-57340916 None:intergenic 45.0%
GTAATGGCACAACGGAATCT+TGG + chr5.3:57341577-57341596 None:intergenic 45.0%
GTACCAACTTGCCGTATTCA+TGG - chr5.3:57340883-57340902 MS.gene009794:intron 45.0%
TATGGAGCTTGGTTCCACAA+AGG - chr5.3:57341659-57341678 MS.gene009794:intron 45.0%
TATTCATGGTCCATGTGCAG+TGG - chr5.3:57340897-57340916 MS.gene009794:intron 45.0%
TGTGGAACCAAGCTCCATAT+GGG + chr5.3:57341658-57341677 None:intergenic 45.0%
TTACAGTCCCATATGGAGCT+TGG - chr5.3:57341648-57341667 MS.gene009794:intron 45.0%
TTGTGGAACCAAGCTCCATA+TGG + chr5.3:57341659-57341678 None:intergenic 45.0%
! AACAGATGCAGTGCTCTAGA+AGG + chr5.3:57342090-57342109 None:intergenic 45.0%
! AACGCTCTGGATTTGTAGGT+AGG + chr5.3:57339829-57339848 None:intergenic 45.0%
! CCAGTTTTCCAAATCAACGG+TGG - chr5.3:57341773-57341792 MS.gene009794:intron 45.0%
! CCGTTTTATCCTACTGGTGA+TGG - chr5.3:57339368-57339387 MS.gene009794:CDS 45.0%
! CGCAGTCTTTTGTAATGGCA+AGG + chr5.3:57340500-57340519 None:intergenic 45.0%
! CTATGTGTAGGTTGGAGGTT+GGG - chr5.3:57341993-57342012 MS.gene009794:CDS 45.0%
! CTCACTCTTTGGCTTAATGG+AGG - chr5.3:57338665-57338684 MS.gene009794:intron 45.0%
! GACGAAAACCACCGTTGATT+TGG + chr5.3:57341784-57341803 None:intergenic 45.0%
! GATTCCGTTGTGCCATTACT+AGG - chr5.3:57341578-57341597 MS.gene009794:intron 45.0%
! TCTATGTGTAGGTTGGAGGT+TGG - chr5.3:57341992-57342011 MS.gene009794:CDS 45.0%
! TTGGGTCCGTTTTATCCTAC+TGG - chr5.3:57339362-57339381 MS.gene009794:CDS 45.0%
!! AGGAGGTGCCTTTACTGAAT+TGG - chr5.3:57339343-57339362 MS.gene009794:CDS 45.0%
!! AGTTCAAGGGTACCCTATTG+AGG - chr5.3:57338505-57338524 MS.gene009794:CDS 45.0%
!! CCACCGTTGATTTGGAAAAC+TGG + chr5.3:57341776-57341795 None:intergenic 45.0%
!! GATCTGGTTGTTAGTCTTCC+AGG - chr5.3:57338527-57338546 MS.gene009794:CDS 45.0%
!! GCTCTAGAAGGTTGTGCATA+TGG + chr5.3:57342078-57342097 None:intergenic 45.0%
!! GGAGGTGCCTTTACTGAATT+GGG - chr5.3:57339344-57339363 MS.gene009794:CDS 45.0%
!! TCCAGAGCGTTGTTTCTTAC+CGG - chr5.3:57339838-57339857 MS.gene009794:intron 45.0%
!! TGGCAACCCACTTTTGAATC+TGG - chr5.3:57340410-57340429 MS.gene009794:intron 45.0%
!! GATAAATTAATAATTAAAAT+TGG + chr5.3:57339903-57339922 None:intergenic 5.0%
ATTGAGTCTCCTGCTGGAGT+TGG - chr5.3:57339561-57339580 MS.gene009794:intron 50.0%
CAACCTCCCTGAGGTTCAAA+AGG - chr5.3:57340845-57340864 MS.gene009794:intron 50.0%
CGATTACAACATCGGTGACG+AGG - chr5.3:57339608-57339627 MS.gene009794:intron 50.0%
CTTACCGGAGAAAGCTATGC+AGG - chr5.3:57339853-57339872 MS.gene009794:intron 50.0%
GGACCATGAATACGGCAAGT+TGG + chr5.3:57340889-57340908 None:intergenic 50.0%
TATGACCAACCAACTCCAGC+AGG + chr5.3:57339573-57339592 None:intergenic 50.0%
TCCGGTAAGAAACAACGCTC+TGG + chr5.3:57339842-57339861 None:intergenic 50.0%
TCGAACGCTCATTCGTGAAC+TGG - chr5.3:57341604-57341623 MS.gene009794:intron 50.0%
TGGACCTGCATAGCTTTCTC+CGG + chr5.3:57339860-57339879 None:intergenic 50.0%
TGTTAACTTTCGCCACCGTG+CGG - chr5.3:57342034-57342053 MS.gene009794:CDS 50.0%
! AGGGTACCCTATTGAGGATC+TGG - chr5.3:57338511-57338530 MS.gene009794:CDS 50.0%
! CCCCTCACTCTTTGGCTTAA+TGG - chr5.3:57338662-57338681 MS.gene009794:intron 50.0%
! GGAGAGCCTTTTGAACCTCA+GGG + chr5.3:57340854-57340873 None:intergenic 50.0%
! TGGAGAGCCTTTTGAACCTC+AGG + chr5.3:57340855-57340874 None:intergenic 50.0%
!! AGTAAAGGCACCTCCTCCAA+CGG + chr5.3:57339339-57339358 None:intergenic 50.0%
!! TATCCTACTGGTGATGGACG+TGG - chr5.3:57339374-57339393 MS.gene009794:CDS 50.0%
ACACCACGTCCATCACCAGT+AGG + chr5.3:57339380-57339399 None:intergenic 55.0%
AGCTTGGTTCCACAAAGGCC+AGG - chr5.3:57341664-57341683 MS.gene009794:intron 55.0%
CCTCCAACGGAAGAACAACC+AGG + chr5.3:57339326-57339345 None:intergenic 55.0%
CCTGGTTGTTCTTCCGTTGG+AGG - chr5.3:57339323-57339342 MS.gene009794:intron 55.0%
GGAGGTTGGGCAACTGAGTA+TGG - chr5.3:57342006-57342025 MS.gene009794:CDS 55.0%
GGTCCTGGTTGTTCTTCCGT+TGG - chr5.3:57339320-57339339 MS.gene009794:intron 55.0%
GGTTGTTCTTCCGTTGGAGG+AGG - chr5.3:57339326-57339345 MS.gene009794:intron 55.0%
GTTAACTTTCGCCACCGTGC+GGG - chr5.3:57342035-57342054 MS.gene009794:CDS 55.0%
TTAACTTTCGCCACCGTGCG+GGG - chr5.3:57342036-57342055 MS.gene009794:CDS 55.0%
! AGTCTCCTGCTGGAGTTGGT+TGG - chr5.3:57339565-57339584 MS.gene009794:intron 55.0%
! GAGCCTTTTGAACCTCAGGG+AGG + chr5.3:57340851-57340870 None:intergenic 55.0%
!! GCAAGTTGGTACGGTTCGCA+TGG + chr5.3:57340875-57340894 None:intergenic 55.0%
AACATCGGTGACGAGGCCAC+AGG - chr5.3:57339615-57339634 MS.gene009794:intron 60.0%
CATGTGAGATGCACCCCGCA+CGG + chr5.3:57342052-57342071 None:intergenic 60.0%
CGTGCGGGGTGCATCTCACA+TGG - chr5.3:57342050-57342069 MS.gene009794:CDS 65.0%
GTGAGATGCACCCCGCACGG+TGG + chr5.3:57342049-57342068 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 57338446 57342170 57338446 ID=MS.gene009794
chr5.3 mRNA 57338446 57342170 57338446 ID=MS.gene009794.t1;Parent=MS.gene009794
chr5.3 exon 57341930 57342170 57341930 ID=MS.gene009794.t1.exon1;Parent=MS.gene009794.t1
chr5.3 CDS 57341930 57342170 57341930 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57341188 57341295 57341188 ID=MS.gene009794.t1.exon2;Parent=MS.gene009794.t1
chr5.3 CDS 57341188 57341295 57341188 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57340980 57341072 57340980 ID=MS.gene009794.t1.exon3;Parent=MS.gene009794.t1
chr5.3 CDS 57340980 57341072 57340980 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57340742 57340834 57340742 ID=MS.gene009794.t1.exon4;Parent=MS.gene009794.t1
chr5.3 CDS 57340742 57340834 57340742 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57340316 57340401 57340316 ID=MS.gene009794.t1.exon5;Parent=MS.gene009794.t1
chr5.3 CDS 57340316 57340401 57340316 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57339930 57340208 57339930 ID=MS.gene009794.t1.exon6;Parent=MS.gene009794.t1
chr5.3 CDS 57339930 57340208 57339930 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57339697 57339830 57339697 ID=MS.gene009794.t1.exon7;Parent=MS.gene009794.t1
chr5.3 CDS 57339697 57339830 57339697 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57339334 57339426 57339334 ID=MS.gene009794.t1.exon8;Parent=MS.gene009794.t1
chr5.3 CDS 57339334 57339426 57339334 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57338931 57339048 57338931 ID=MS.gene009794.t1.exon9;Parent=MS.gene009794.t1
chr5.3 CDS 57338931 57339048 57338931 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
chr5.3 exon 57338446 57338613 57338446 ID=MS.gene009794.t1.exon10;Parent=MS.gene009794.t1
chr5.3 CDS 57338446 57338613 57338446 ID=cds.MS.gene009794.t1;Parent=MS.gene009794.t1
Gene Sequence

>MS.gene009794

ATGGCACAGTATTGGTTTCTTAGTGTATTGATTGCTGTGTCCTATCTTTGCAATCTGCTAGTTCAAGGGTACCCTATTGAGGATCTGGTTGTTAGTCTTCCAGGTCAACCTAAAGTTGAATTCAGTCAATATGCTGGTTATGTTGATATTGATGTAAATCATGGTAGAAGTTTGTTTTATTATTTTGTTGAAGCTGATCATAAACCTCAAAATAAACCCCTCACTCTTTGGCTTAATGGAGGTAAATAATAATTCACTAATATATTATATATCATCACTTTTAATTTTGATTATTATGGTTGCTGACTTAATTTTGTTATATTATTTTCAGTATATTCTTTGTTATCTTTTTTTTTTTTTTTTTTTTTTGTATGTTTGGATTGACGGTGAGTTTACCAAATTCACGGTTGTACTGTGATTTAGTGTAACTTTTGTCTAAATCGCGGTGGTTCAGCGTGATTTTGACAATTAGACCAAACATGCAATTTGAATTTTACATGTTGTTATCTTTTGGTGAAAAGCATTGTACTTGTGTTGTTTTGTGTGTGTTGTTTTGTGTTATGTTATGTTGTGTTGTCCCTACAAATTCAGATTGTGTTGTTGTTCTTGTCTTTATAGTACAAAATCATGTTTTCTTTGACAAGAACAGAATCTATGGATCAAAAATGTTGAATGATTCTGCTTTTCTAACAGTTGACAATTGACAGAAAGTACCTTTACCTTATATGAAAGATGCTATACTTTAATTTTATTTTTTTCATAGTTTTATTTTTTGTAAATCGGCGGCATCAGATTCAAATTCAAATCCTGTTACAAGGCTCATAATCTGTATATTAATTGAAAGAGATTAAGTAGTAACTTTGTTAATTTTTCAGGTCCTGGTTGTTCTTCCGTTGGAGGAGGTGCCTTTACTGAATTGGGTCCGTTTTATCCTACTGGTGATGGACGTGGTGTACGAAAGAATTCAATGTCCTGGAATAGAGGTATCAATTTTGTTTATTATGGTTTATGAGTTTGTGTTTTGATTGATATTAGAGAATAATTTGGGTTTATATATAGATTCCTTATTTTAATATTGTGTTTACTTTTTTATCATAGCTTCCAATCTTCTCTTTATTGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCCGATTACAACATCGGTGACGAGGCCACAGGTACTGATTTAAACTTTTATGTGAACAAATTTATATGTAGTTATTATTATCTATGCAAAAGAAAACATTATTTTTAGATGTGTTATGTATGAAATTTGTTAGTTTTATAATGCATGGATATAATCCTTTAATTTGTTTTTGGCAGCCAATGATATGCTTTCGTTCTTCCTGAAATGGTTCGAGAAGTTTCCTACCTACAAATCCAGAGCGTTGTTTCTTACCGGAGAAAGCTATGCAGGTCCAAAAGACACATTAATCAGATCCCAATTTTAATTATTAATTTATCGTTTCGAAATTCTCAAAAGTTGGTCTCGTGTTACAAAATATTCTGTTTTGCTGACATGATTCAGTTATACTGCATAATTAAACCTCGTATTGTATTCTTTATGCATATGCACATAACCTATGCCATCATTGCTAACTGGGATATTTGCTATACAATTATTATCTCATTTTATTTTTACATTGTTTATTGAAATATTTGTTCCTCTTTTCTATTTTTATTATCTGTTTTCTTTTACCTTTGTTCTCATGAACAATTTTTGTTTCTTTACCAATACTTTATAATGTTTATTCAGGACATTACATTCCTCAGTTAGCTAATGCTATTCTTGATTTTAATGCTCATTCAACCGGTTACAAGTTCAATTTGAAAGGAGTAGCTGTAAGATCCCATTCATATGATATCTTATATTTGGCTATTGAGTGTTTAATTAAGAAATCTGGGAATTTAATTAAAGTAATCTAAGCTTTTTTCTCTGGCTTTGTTAGATTGGCAACCCACTTTTGAATCTGGATCGAGATGCACGAGCACCATATGATTATTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTTGCCATTACAAAAGACTGCGATTTTGATGATTATACCTTCGCATCTCCTCATAATGTATCTGCATCATGCAACACTGCCATCAGTGATGCAAATGAAGTTGTCGGCAATTATATAAACAACTATGATGTGATTCTTGATGTTTGTTATCCATCCATAGTTGAACAAGAATTGAGATTGAAAAAGATGGTACTTTTTTGCCTCTTTCATTTCTATTATACTACTAATGATATTTTTAACTTTTGATGAAATTATAAACTAATTAATTCGTCTATTTCGTTACTGCAGGCTACTAAAATAAGTATAGGTGTAGATGTCTGTATGAGTTATGAAAGAAAATTTTACTTCAACCTCCCTGAGGTTCAAAAGGCTCTCCATGCGAACCGTACCAACTTGCCGTATTCATGGTCCATGTGCAGTGGGTAAGTATAAATTAGAGACAGTCAAGTCCCATAAACTATTATTAGCGACACTCAAGTCCCATAAACTAGAGATATCATCTTTTAATACAGCTTATAAAATATAAACAATCATTGCCTTACATGTTGATTTTGTTCGATTGAGTTTTGCTAATTGAGATTTTTAAATTTACTTGAAATCTTGACTGCTATAATCATAATAGATATGTCTTTTTTTTTTCTTCATTTTCATTAGTTATCTGATGTCTGATCTGCAGTTTTTCTTCATTGCAGTGTTTTAAATTACAGTGATACAGATCCTAACATTAATATGCTTCCAATTCTCAAACGGATTGTTCAAAACCGTATTCCAGTATGGGTTTTCAGGTAATTAATTTCAACAAAAGAGACCAATTGGCTATTTAATTTATACATTTTGATAGTAAGCTACGTTACAGAATGCTAATTATGTTAATATCAATAAGTTAGTTATAAATTAGTTAGGTGGTTAGTCCCTATAAATACTATACTTTATCATTCATTTTACATCTTTTATCCGAACGACTCCTTACAAGTTTTACTCACTCTCAGGCTTCCAAATCTCTATTGATCATTTCTCTTGAAATCCTCCGATTACTAAGAAGCTAATCATGTGTTAAATTATTATGACAGTGGAGACCAAGATTCCGTTGTGCCATTACTAGGTTCTCGAACGCTCATTCGTGAACTGGCTGATGACCTGAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTAATTATTTTTAACAGTTTAACCATTTTCTGCATTTCGAAATATAAGTCCAGTATTCTATAGTATGGTTATGCAATTTTTTTCACTCCAGTTTTCCAAATCAACGGTGGTTTTCGTCACTGTTGTCAAATAAAGGCTATAGTGACGCTAATGCGTAGTGGAATTTAAACAAATCATTATTGTTATGAGATACGCTATTTAGCGGCGCTACAACATTGTAGCTTTGCGGAATTAACAAACAGTTATTTTCTACAATTCTTGGTTGACAACACTAGTTTTGATGAGTAAGAGTTGATTGATTGCATATCTATGTGTAGGTTGGAGGTTGGGCAACTGAGTATGGAAATTTGTTAACTTTCGCCACCGTGCGGGGTGCATCTCACATGGTACCATATGCACAACCTTCTAGAGCACTGCATCTGTTCAGTAACTTTGTGAATGGTAGGAGATTGCCAAACACAACAAGACCTTCAATTGATGGATGA
Protein sequence

>MS.gene009794.t1

MAQYWFLSVLIAVSYLCNLLVQGYPIEDLVVSLPGQPKVEFSQYAGYVDIDVNHGRSLFYYFVEADHKPQNKPLTLWLNGGPGCSSVGGGAFTELGPFYPTGDGRGVRKNSMSWNRASNLLFIESPAGVGWSYSNTTSDYNIGDEATANDMLSFFLKWFEKFPTYKSRALFLTGESYAGHYIPQLANAILDFNAHSTGYKFNLKGVAIGNPLLNLDRDARAPYDYFWSHGMISDEIGLAITKDCDFDDYTFASPHNVSASCNTAISDANEVVGNYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMSYERKFYFNLPEVQKALHANRTNLPYSWSMCSGVLNYSDTDPNINMLPILKRIVQNRIPVWVFSGDQDSVVPLLGSRTLIRELADDLKFKITVPYGAWFHKGQVGGWATEYGNLLTFATVRGASHMVPYAQPSRALHLFSNFVNGRRLPNTTRPSIDG