Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009889.t1 | XP_003615614.1 | 92.5 | 240 | 18 | 0 | 1 | 240 | 1 | 240 | 5.50E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009889.t1 | Q9SD61 | 70.9 | 165 | 48 | 0 | 1 | 165 | 1 | 165 | 3.2e-63 | 243.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009889.t1 | G7K6D4 | 92.5 | 240 | 18 | 0 | 1 | 240 | 1 | 240 | 3.9e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009889 | MS.gene050322 | PPI |
| MS.gene009889 | MS.gene007227 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009889.t1 | MTR_5g070100 | 95.674 | 393 | 17 | 0 | 1 | 393 | 1 | 393 | 0.0 | 716 |
| MS.gene009889.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 1.74e-11 | 66.2 |
| MS.gene009889.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 2.04e-11 | 65.9 |
| MS.gene009889.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 2.06e-11 | 65.9 |
| MS.gene009889.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 3.37e-11 | 65.5 |
| MS.gene009889.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 3.43e-11 | 65.5 |
| MS.gene009889.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 410 | 481 | 6.49e-11 | 64.3 |
| MS.gene009889.t1 | MTR_3g005670 | 37.500 | 72 | 45 | 0 | 38 | 109 | 412 | 483 | 6.68e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009889.t1 | AT3G47120 | 67.308 | 208 | 66 | 1 | 1 | 206 | 1 | 208 | 1.79e-97 | 293 |
| MS.gene009889.t1 | AT3G47120 | 78.182 | 165 | 36 | 0 | 1 | 165 | 1 | 165 | 2.17e-94 | 287 |
| MS.gene009889.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 321 | 446 | 5.52e-13 | 70.9 |
| MS.gene009889.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 5.69e-13 | 70.9 |
| MS.gene009889.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 6.67e-13 | 70.5 |
| MS.gene009889.t1 | AT4G36690 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 7.45e-13 | 70.5 |
| MS.gene009889.t1 | AT5G19960 | 35.443 | 79 | 50 | 1 | 34 | 112 | 5 | 82 | 1.34e-11 | 65.9 |
| MS.gene009889.t1 | AT5G64200 | 42.105 | 76 | 44 | 0 | 34 | 109 | 14 | 89 | 5.31e-11 | 63.5 |
| MS.gene009889.t1 | AT5G64200 | 42.105 | 76 | 44 | 0 | 34 | 109 | 14 | 89 | 5.31e-11 | 63.5 |
| MS.gene009889.t1 | AT1G60900 | 38.889 | 72 | 44 | 0 | 38 | 109 | 377 | 448 | 8.06e-11 | 64.3 |
Find 96 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATACCTTCTTTCTTTCT+TGG | 0.161928 | 5.3:+55870177 | None:intergenic |
| AGGTTTCAGGCAGGATTATT+AGG | 0.165396 | 5.3:-55872457 | MS.gene009889:CDS |
| CTGAATGGAGCTCAGGTTTC+AGG | 0.220193 | 5.3:-55872470 | MS.gene009889:CDS |
| AGGAGGGATGTTGATGATTT+TGG | 0.220213 | 5.3:-55869755 | MS.gene009889:CDS |
| CTGAGCCAAGAGATCATAAA+AGG | 0.251327 | 5.3:-55869865 | MS.gene009889:CDS |
| GAATCTCTATCTCTAGTTTC+TGG | 0.272752 | 5.3:+55870133 | None:intergenic |
| CTCTCTTCTATCACTTCTCT+TGG | 0.278923 | 5.3:+55870066 | None:intergenic |
| GTTCAAATTCATCATCTTGA+TGG | 0.312431 | 5.3:+55869957 | None:intergenic |
| CCATACCTTCTTTCTTTCTT+GGG | 0.316389 | 5.3:+55870178 | None:intergenic |
| CAAGGAATGGTTATGATGAT+AGG | 0.321506 | 5.3:-55869892 | MS.gene009889:CDS |
| CTTCTATCACTTCTCTTGGA+TGG | 0.327526 | 5.3:+55870070 | None:intergenic |
| TGTTGATAAATATAAGAAAA+TGG | 0.328542 | 5.3:-55872426 | MS.gene009889:CDS |
| CACGAGTACACTCCCCTCTT+TGG | 0.331022 | 5.3:+55872342 | None:intergenic |
| TTCTATCACTTCTCTTGGAT+GGG | 0.350528 | 5.3:+55870071 | None:intergenic |
| TCTCAATTGCCATTACCTTC+TGG | 0.363694 | 5.3:+55869544 | None:intergenic |
| CTCCTACGCCGATCTTCTCT+TGG | 0.363755 | 5.3:+55869929 | None:intergenic |
| GGTTTCAGGCAGGATTATTA+GGG | 0.365160 | 5.3:-55872456 | MS.gene009889:CDS |
| TTGTAGAGAGCTGCAAATAC+TGG | 0.385773 | 5.3:-55870250 | MS.gene009889:intron |
| ACATAAGCGAAGACGCTTCA+TGG | 0.386973 | 5.3:-55873204 | MS.gene009889:CDS |
| AAGAGGAAGCAAAGCAGAAA+AGG | 0.403194 | 5.3:-55872391 | MS.gene009889:CDS |
| CTAGTTTCTGGAATGCGATC+TGG | 0.416666 | 5.3:+55870145 | None:intergenic |
| CAAGAGAAACACACGGTAGC+AGG | 0.422317 | 5.3:-55869724 | MS.gene009889:CDS |
| TCATCATCTTGATGGTCTCT+TGG | 0.430036 | 5.3:+55869965 | None:intergenic |
| AAGTGATAGAAGAGAGGAAA+AGG | 0.434079 | 5.3:-55870059 | MS.gene009889:CDS |
| GGTCAAAAGAAGATAATGAT+AGG | 0.436648 | 5.3:-55869655 | MS.gene009889:CDS |
| GGTGATAACGGGATCGCAAA+AGG | 0.439493 | 5.3:-55870223 | MS.gene009889:CDS |
| TGTGTCACAGATAATCTGAA+TGG | 0.449720 | 5.3:-55872485 | MS.gene009889:intron |
| AGATCAGAATCTCTTGACTT+AGG | 0.458844 | 5.3:+55869800 | None:intergenic |
| GAGAGCTGCAAATACTGGTT+GGG | 0.469783 | 5.3:-55870245 | MS.gene009889:CDS |
| ATACTGGTTGGGGTGATAAC+GGG | 0.475497 | 5.3:-55870234 | MS.gene009889:CDS |
| AATACTGGTTGGGGTGATAA+CGG | 0.477693 | 5.3:-55870235 | MS.gene009889:CDS |
| GTGATAACGGGATCGCAAAA+GGG | 0.481563 | 5.3:-55870222 | MS.gene009889:CDS |
| GAGATCATAAAAGGGAAGAC+AGG | 0.495058 | 5.3:-55869856 | MS.gene009889:CDS |
| TGCGCTTCACCAGTGTTAGC+GGG | 0.500198 | 5.3:+55873260 | None:intergenic |
| GGGGAGTGTACTCGTGGAGC+TGG | 0.503662 | 5.3:-55872335 | MS.gene009889:CDS |
| CTTGTTAGAGACAAAGGTAC+TGG | 0.504941 | 5.3:-55872891 | MS.gene009889:CDS |
| ACTGATCGATCTGAATCAAA+AGG | 0.508434 | 5.3:-55869602 | MS.gene009889:CDS |
| AGATGGCGATGATAAATTTG+TGG | 0.511498 | 5.3:-55870023 | MS.gene009889:CDS |
| AGATAATCTGAATGGAGCTC+AGG | 0.511594 | 5.3:-55872477 | MS.gene009889:CDS |
| CAAAGGTACTGGCAAATCAA+AGG | 0.521371 | 5.3:-55872880 | MS.gene009889:CDS |
| CCCAAGAAAGAAAGAAGGTA+TGG | 0.525733 | 5.3:-55870178 | MS.gene009889:CDS |
| GATGGCGATGATAAATTTGT+GGG | 0.526799 | 5.3:-55870022 | MS.gene009889:CDS |
| AATGGAAGAGGAAGATGAAG+AGG | 0.528121 | 5.3:-55872408 | MS.gene009889:CDS |
| AAAGGTACTGGCAAATCAAA+GGG | 0.531387 | 5.3:-55872879 | MS.gene009889:CDS |
| TCATCAACATCCCTCCTGCT+TGG | 0.531876 | 5.3:+55869761 | None:intergenic |
| AAGGAATGGTTATGATGATA+GGG | 0.535419 | 5.3:-55869891 | MS.gene009889:CDS |
| GTCAATAAAGCAAGATGATG+TGG | 0.538169 | 5.3:-55869831 | MS.gene009889:CDS |
| GAGAAGAAAAGAGGTCCAGA+AGG | 0.539014 | 5.3:-55869559 | MS.gene009889:CDS |
| TAAATATAAGAAAATGGAAG+AGG | 0.539866 | 5.3:-55872420 | MS.gene009889:CDS |
| ATTAATCTTGTTAGAGACAA+AGG | 0.541518 | 5.3:-55872897 | MS.gene009889:CDS |
| TTCAGGCAGGATTATTAGGG+TGG | 0.543263 | 5.3:-55872453 | MS.gene009889:CDS |
| ATGCGCTTCACCAGTGTTAG+CGG | 0.545822 | 5.3:+55873259 | None:intergenic |
| GGGGATAATGACAAATATGA+TGG | 0.546189 | 5.3:-55870202 | MS.gene009889:CDS |
| TTTGTCGAGCTTTCCAAAGA+GGG | 0.552969 | 5.3:-55872355 | MS.gene009889:CDS |
| CGAAGCACTAATCTTGCTGT+TGG | 0.553561 | 5.3:-55872828 | MS.gene009889:intron |
| AGAGGAAGCAAAGCAGAAAA+GGG | 0.556582 | 5.3:-55872390 | MS.gene009889:CDS |
| CACACGGTAGCAGGGAAGAG+AGG | 0.558042 | 5.3:-55869715 | MS.gene009889:CDS |
| AGAGAGCTGCAAATACTGGT+TGG | 0.561675 | 5.3:-55870246 | MS.gene009889:CDS |
| GAGAGGAAAAGGTGTTGCGA+AGG | 0.564858 | 5.3:-55870048 | MS.gene009889:CDS |
| CTGACCGAAGAGAAGAAAAG+AGG | 0.567918 | 5.3:-55869568 | MS.gene009889:CDS |
| AAGAGAAACACACGGTAGCA+GGG | 0.569250 | 5.3:-55869723 | MS.gene009889:CDS |
| TGAGCCAAGAGATCATAAAA+GGG | 0.569269 | 5.3:-55869864 | MS.gene009889:CDS |
| GAGAAGATAAAAGACCAAGC+AGG | 0.574680 | 5.3:-55869775 | MS.gene009889:CDS |
| AAAAGAGGTCCAGAAGGTAA+TGG | 0.576819 | 5.3:-55869553 | None:intergenic |
| CAGAGCCCGTGAAAATGAGA+TGG | 0.577175 | 5.3:-55870104 | MS.gene009889:CDS |
| ATTCCCTTCGATTTCACCGA+GGG | 0.582225 | 5.3:-55873139 | MS.gene009889:CDS |
| TTTGGTGATATCCAGATATG+GGG | 0.582855 | 5.3:-55872931 | MS.gene009889:intron |
| TGATAACGGGATCGCAAAAG+GGG | 0.584290 | 5.3:-55870221 | MS.gene009889:CDS |
| ATCACCCTCGGTGAAATCGA+AGG | 0.587004 | 5.3:+55873135 | None:intergenic |
| GTTTGTCGAGCTTTCCAAAG+AGG | 0.590686 | 5.3:-55872356 | MS.gene009889:CDS |
| AGAGCTGCAAATACTGGTTG+GGG | 0.591634 | 5.3:-55870244 | MS.gene009889:CDS |
| GGTGATATCCAGATATGGGG+AGG | 0.593647 | 5.3:-55872928 | MS.gene009889:intron |
| AACAGTGGCCAAGAGAAGAT+CGG | 0.596764 | 5.3:-55869937 | MS.gene009889:CDS |
| ATGGTCCCAAGAAAGAAAGA+AGG | 0.605242 | 5.3:-55870183 | MS.gene009889:CDS |
| ATGGAGCTCAGGTTTCAGGC+AGG | 0.605424 | 5.3:-55872466 | MS.gene009889:CDS |
| CAAGAGAAGTGATAGAAGAG+AGG | 0.606859 | 5.3:-55870065 | MS.gene009889:CDS |
| TCACCCTCGGTGAAATCGAA+GGG | 0.609691 | 5.3:+55873136 | None:intergenic |
| GGAAGCAAAGCAGAAAAGGG+AGG | 0.609716 | 5.3:-55872387 | MS.gene009889:CDS |
| AAGGTGTTGCGAAGGCAAGA+TGG | 0.613628 | 5.3:-55870040 | MS.gene009889:CDS |
| AAGATAAAAGACCAAGCAGG+AGG | 0.617516 | 5.3:-55869772 | MS.gene009889:CDS |
| AGACATGAACCCGCTAACAC+TGG | 0.618621 | 5.3:-55873269 | None:intergenic |
| ATCATAAAAGGGAAGACAGG+AGG | 0.621506 | 5.3:-55869853 | MS.gene009889:CDS |
| TTGTCGAGCTTTCCAAAGAG+GGG | 0.625509 | 5.3:-55872354 | MS.gene009889:CDS |
| AACAGCGATCACATCACCCT+CGG | 0.630240 | 5.3:+55873123 | None:intergenic |
| GGCCAAGAGAAGATCGGCGT+AGG | 0.632377 | 5.3:-55869931 | MS.gene009889:CDS |
| TTTCTGGAATGCGATCTGGT+TGG | 0.632912 | 5.3:+55870149 | None:intergenic |
| CAAAGAGGGGAGTGTACTCG+TGG | 0.640039 | 5.3:-55872341 | MS.gene009889:CDS |
| GAAAGCTCGACAAACACCAC+GGG | 0.648636 | 5.3:+55872364 | None:intergenic |
| AGATAAAAGACCAAGCAGGA+GGG | 0.656711 | 5.3:-55869771 | MS.gene009889:CDS |
| ACCGCCGACGAAAACATAAG+CGG | 0.665252 | 5.3:+55873162 | None:intergenic |
| GGAAAGCTCGACAAACACCA+CGG | 0.674826 | 5.3:+55872363 | None:intergenic |
| AAGATGATGAATTTGAACAG+TGG | 0.680921 | 5.3:-55869952 | MS.gene009889:CDS |
| AAGCAGAAAAGGGAGGCCCG+TGG | 0.687506 | 5.3:-55872380 | MS.gene009889:CDS |
| CTGACGATGAATCTATGTTG+AGG | 0.692148 | 5.3:-55869676 | MS.gene009889:CDS |
| TATTCCCTTCGATTTCACCG+AGG | 0.727317 | 5.3:-55873140 | MS.gene009889:CDS |
| AGCAAGTCAAGAGAAACACA+CGG | 0.752914 | 5.3:-55869731 | MS.gene009889:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTAATTTAATTTAA+TGG | - | chr5.3:55871436-55871455 | MS.gene009889:intron | 0.0% |
| !! | AATTTCAGATAAATAAATAA+AGG | + | chr5.3:55871400-55871419 | None:intergenic | 10.0% |
| !!! | TGGATATTATTTATATTTTA+AGG | - | chr5.3:55871157-55871176 | MS.gene009889:intron | 10.0% |
| !!! | TTTTAATTTAATTTAATGGT+TGG | - | chr5.3:55871440-55871459 | MS.gene009889:intron | 10.0% |
| !! | ATAAATAAATAAAGGCTAAT+CGG | + | chr5.3:55871392-55871411 | None:intergenic | 15.0% |
| !! | ATATAGAAAAATAATATTCC+TGG | - | chr5.3:55871805-55871824 | MS.gene009889:intron | 15.0% |
| !! | CAAAAAAGATAAAAAAAACT+GGG | + | chr5.3:55872384-55872403 | None:intergenic | 15.0% |
| !! | TATAAATAATATCCACTATA+AGG | + | chr5.3:55871152-55871171 | None:intergenic | 15.0% |
| !!! | AAAATATACTTTAGAATTAC+AGG | + | chr5.3:55870032-55870051 | None:intergenic | 15.0% |
| !!! | TGTTGATAAATATAAGAAAA+TGG | - | chr5.3:55870395-55870414 | MS.gene009889:intron | 15.0% |
| !!! | TTTTTGTTAAACATAGTTTA+AGG | - | chr5.3:55870671-55870690 | MS.gene009889:intron | 15.0% |
| !! | ATTGAAAAGTTCTTCTTTAT+AGG | + | chr5.3:55871270-55871289 | None:intergenic | 20.0% |
| !! | CGAAGAAATACATTAAAAAA+AGG | + | chr5.3:55870968-55870987 | None:intergenic | 20.0% |
| !! | GATAATTCAAAAATACTTTG+TGG | + | chr5.3:55870560-55870579 | None:intergenic | 20.0% |
| !! | GCAAAAAAGATAAAAAAAAC+TGG | + | chr5.3:55872385-55872404 | None:intergenic | 20.0% |
| !! | GCATTATATGAAAAACTATT+AGG | + | chr5.3:55871035-55871054 | None:intergenic | 20.0% |
| !! | GGATTGATAAAATAACAATT+AGG | - | chr5.3:55871461-55871480 | MS.gene009889:intron | 20.0% |
| !! | TAAATATAAGAAAATGGAAG+AGG | - | chr5.3:55870401-55870420 | MS.gene009889:intron | 20.0% |
| !!! | AAGATTTTCAATTTCTTGAT+TGG | - | chr5.3:55871291-55871310 | MS.gene009889:intron | 20.0% |
| !!! | ATGTTCAAATTTTCATGATA+AGG | + | chr5.3:55870640-55870659 | None:intergenic | 20.0% |
| !!! | ATTGATTGATAGTATCTTTA+TGG | - | chr5.3:55869802-55869821 | MS.gene009889:CDS | 20.0% |
| !!! | TATGTTATAAAATTTGCTGA+TGG | - | chr5.3:55872456-55872475 | MS.gene009889:CDS | 20.0% |
| !!! | TCTGGAATTATAAATTTGAA+AGG | - | chr5.3:55871215-55871234 | MS.gene009889:intron | 20.0% |
| !!! | TTGATTATCTGTTTTTTTCA+GGG | - | chr5.3:55870278-55870297 | MS.gene009889:intron | 20.0% |
| !!! | TTTAAGGTAAATGATAACTA+GGG | - | chr5.3:55871173-55871192 | MS.gene009889:intron | 20.0% |
| !!! | TTTGATTATCTGTTTTTTTC+AGG | - | chr5.3:55870277-55870296 | MS.gene009889:intron | 20.0% |
| !!! | TTTTAAGGTAAATGATAACT+AGG | - | chr5.3:55871172-55871191 | MS.gene009889:intron | 20.0% |
| ! | AAGAAATGAATATATTCCAG+AGG | - | chr5.3:55871612-55871631 | MS.gene009889:intron | 25.0% |
| ! | ACAAAAGAATAACACAGTTA+GGG | + | chr5.3:55872555-55872574 | None:intergenic | 25.0% |
| ! | ACACATACACATATAATTCT+TGG | - | chr5.3:55870989-55871008 | MS.gene009889:intron | 25.0% |
| ! | ACATCTTTCAATAGTCAATT+CGG | + | chr5.3:55870162-55870181 | None:intergenic | 25.0% |
| ! | AGAACTGAAAACATACAATA+AGG | + | chr5.3:55872531-55872550 | None:intergenic | 25.0% |
| ! | ATTAATCTTGTTAGAGACAA+AGG | - | chr5.3:55869924-55869943 | MS.gene009889:CDS | 25.0% |
| ! | ATTAGGTGAAATAACTGTAT+AGG | + | chr5.3:55871018-55871037 | None:intergenic | 25.0% |
| ! | CATATATAGTTCATCTTGAA+AGG | - | chr5.3:55871538-55871557 | MS.gene009889:intron | 25.0% |
| ! | GAAAAATAATATTCCTGGAA+AGG | - | chr5.3:55871810-55871829 | MS.gene009889:intron | 25.0% |
| ! | GTAGTTATATAACCTTATAG+TGG | - | chr5.3:55871137-55871156 | MS.gene009889:intron | 25.0% |
| ! | TAAGGTTATATAACTACAGA+TGG | + | chr5.3:55871134-55871153 | None:intergenic | 25.0% |
| ! | TACAAAAGAATAACACAGTT+AGG | + | chr5.3:55872556-55872575 | None:intergenic | 25.0% |
| ! | TACTTACAAAAGACACATTA+GGG | + | chr5.3:55870098-55870117 | None:intergenic | 25.0% |
| ! | TCAAGTAATAAGAACTTAGA+AGG | + | chr5.3:55872295-55872314 | None:intergenic | 25.0% |
| ! | TGGCTAAATTATCTAACATT+TGG | + | chr5.3:55871114-55871133 | None:intergenic | 25.0% |
| ! | TTACTTACAAAAGACACATT+AGG | + | chr5.3:55870099-55870118 | None:intergenic | 25.0% |
| ! | TTTGATACATTCAACATTCA+AGG | - | chr5.3:55870203-55870222 | MS.gene009889:CDS | 25.0% |
| !! | AATTTTCATGATAAGGTCAT+CGG | + | chr5.3:55870633-55870652 | None:intergenic | 25.0% |
| !! | GTCTTTTGTAAGTAATTGTA+TGG | - | chr5.3:55870104-55870123 | MS.gene009889:CDS | 25.0% |
| !! | GTTGTACAAATGTTTTTCTT+AGG | - | chr5.3:55870768-55870787 | MS.gene009889:intron | 25.0% |
| !!! | ATTTTTGATTATGTTATCCC+TGG | - | chr5.3:55870047-55870066 | MS.gene009889:CDS | 25.0% |
| !!! | GATGACAAGTTTTTTGTTTT+TGG | - | chr5.3:55869872-55869891 | MS.gene009889:CDS | 25.0% |
| !!! | TTATAAAATTTGCTGATGGT+TGG | - | chr5.3:55872460-55872479 | MS.gene009889:CDS | 25.0% |
| AAAACATACAATAAGGTAGC+AGG | + | chr5.3:55872524-55872543 | None:intergenic | 30.0% | |
| AAGATGATGAATTTGAACAG+TGG | - | chr5.3:55872869-55872888 | MS.gene009889:CDS | 30.0% | |
| AAGGAATGGTTATGATGATA+GGG | - | chr5.3:55872930-55872949 | MS.gene009889:intron | 30.0% | |
| AAGTCCAATTCATGTATTAC+CGG | - | chr5.3:55871734-55871753 | MS.gene009889:intron | 30.0% | |
| ACTTCTCTGAATATGTTCTT+AGG | - | chr5.3:55872099-55872118 | MS.gene009889:intron | 30.0% | |
| CTGAATTGCTTTGTAATGTT+TGG | - | chr5.3:55870309-55870328 | MS.gene009889:intron | 30.0% | |
| CTTCTCTGAATATGTTCTTA+GGG | - | chr5.3:55872100-55872119 | MS.gene009889:intron | 30.0% | |
| GAAGAAAAAAGATCAAGGAA+TGG | - | chr5.3:55872916-55872935 | MS.gene009889:CDS | 30.0% | |
| GAATATGTTCTTAGGGATTT+AGG | - | chr5.3:55872107-55872126 | MS.gene009889:intron | 30.0% | |
| GGTCAAAAGAAGATAATGAT+AGG | - | chr5.3:55873166-55873185 | MS.gene009889:CDS | 30.0% | |
| GTTCAAATTCATCATCTTGA+TGG | + | chr5.3:55872867-55872886 | None:intergenic | 30.0% | |
| TGATAGTATCTTTATGGTGT+TGG | - | chr5.3:55869808-55869827 | MS.gene009889:CDS | 30.0% | |
| TTCGTTGTGAGTTATAACTT+GGG | + | chr5.3:55872210-55872229 | None:intergenic | 30.0% | |
| TTTCGTTGTGAGTTATAACT+TGG | + | chr5.3:55872211-55872230 | None:intergenic | 30.0% | |
| ! | AGAGGAAGAATTTTATGTGA+AGG | - | chr5.3:55871877-55871896 | MS.gene009889:intron | 30.0% |
| ! | AGGAAGAATTTTATGTGAAG+GGG | - | chr5.3:55871879-55871898 | MS.gene009889:intron | 30.0% |
| ! | ATCACGTGATACTATTTTCA+TGG | - | chr5.3:55871079-55871098 | MS.gene009889:intron | 30.0% |
| ! | CACATAAAGTTTTACATCGA+CGG | + | chr5.3:55869780-55869799 | None:intergenic | 30.0% |
| ! | CTAATTCCATCTCATTTTCA+CGG | + | chr5.3:55872726-55872745 | None:intergenic | 30.0% |
| ! | GAGGAAGAATTTTATGTGAA+GGG | - | chr5.3:55871878-55871897 | MS.gene009889:intron | 30.0% |
| ! | GTGATACTATTTTCATGGTT+AGG | - | chr5.3:55871084-55871103 | MS.gene009889:intron | 30.0% |
| ! | TAATTCCATCTCATTTTCAC+GGG | + | chr5.3:55872725-55872744 | None:intergenic | 30.0% |
| ! | TGTAATTTTCGATACATCCA+GGG | + | chr5.3:55870067-55870086 | None:intergenic | 30.0% |
| ! | TTGTAATTTTCGATACATCC+AGG | + | chr5.3:55870068-55870087 | None:intergenic | 30.0% |
| !! | TTTTGGTGATATCCAGATAT+GGG | - | chr5.3:55869889-55869908 | MS.gene009889:CDS | 30.0% |
| !! | TTTTTGGTGATATCCAGATA+TGG | - | chr5.3:55869888-55869907 | MS.gene009889:CDS | 30.0% |
| AAAGGAGTGAATTGGGTTAT+GGG | - | chr5.3:55871828-55871847 | MS.gene009889:intron | 35.0% | |
| AAGTGATAGAAGAGAGGAAA+AGG | - | chr5.3:55872762-55872781 | MS.gene009889:intron | 35.0% | |
| ACGTGATTCTACAGTCAAAT+TGG | + | chr5.3:55871066-55871085 | None:intergenic | 35.0% | |
| ACTGATCGATCTGAATCAAA+AGG | - | chr5.3:55873219-55873238 | MS.gene009889:CDS | 35.0% | |
| AGATCAGAATCTCTTGACTT+AGG | + | chr5.3:55873024-55873043 | None:intergenic | 35.0% | |
| AGATGGCGATGATAAATTTG+TGG | - | chr5.3:55872798-55872817 | MS.gene009889:intron | 35.0% | |
| ATCCTATTCGTGAGTTTACA+AGG | + | chr5.3:55871707-55871726 | None:intergenic | 35.0% | |
| ATCTTGAAAGGATGAAACCT+AGG | - | chr5.3:55871550-55871569 | MS.gene009889:intron | 35.0% | |
| CAAGGAATGGTTATGATGAT+AGG | - | chr5.3:55872929-55872948 | MS.gene009889:intron | 35.0% | |
| CCATACCTTCTTTCTTTCTT+GGG | + | chr5.3:55872646-55872665 | None:intergenic | 35.0% | |
| CTGATAGCTATCACCAAATA+CGG | + | chr5.3:55871957-55871976 | None:intergenic | 35.0% | |
| GACAACATGACACACATTTA+AGG | - | chr5.3:55870234-55870253 | MS.gene009889:CDS | 35.0% | |
| GAGTTTACAAGGGTCTATTT+AGG | + | chr5.3:55871696-55871715 | None:intergenic | 35.0% | |
| GATGGCGATGATAAATTTGT+GGG | - | chr5.3:55872799-55872818 | MS.gene009889:intron | 35.0% | |
| GCTTGAGTTTGTAATTGTAC+TGG | - | chr5.3:55872254-55872273 | MS.gene009889:intron | 35.0% | |
| GGAGAGAAGAAAAAAGATCA+AGG | - | chr5.3:55872911-55872930 | MS.gene009889:CDS | 35.0% | |
| GGGGATAATGACAAATATGA+TGG | - | chr5.3:55872619-55872638 | MS.gene009889:intron | 35.0% | |
| GTCAATAAAGCAAGATGATG+TGG | - | chr5.3:55872990-55873009 | MS.gene009889:intron | 35.0% | |
| TATGCCGGTAATACATGAAT+TGG | + | chr5.3:55871741-55871760 | None:intergenic | 35.0% | |
| TCAGCAAGTTGTTTAACAAG+AGG | - | chr5.3:55871859-55871878 | MS.gene009889:intron | 35.0% | |
| TCCTATTCGTGAGTTTACAA+GGG | + | chr5.3:55871706-55871725 | None:intergenic | 35.0% | |
| TGAAAGGTTGTATTGAGAAG+TGG | - | chr5.3:55871231-55871250 | MS.gene009889:intron | 35.0% | |
| TGAGCCAAGAGATCATAAAA+GGG | - | chr5.3:55872957-55872976 | MS.gene009889:intron | 35.0% | |
| TGTGTCACAGATAATCTGAA+TGG | - | chr5.3:55870336-55870355 | MS.gene009889:intron | 35.0% | |
| TTACTCTACTATCTTTCCTC+TGG | + | chr5.3:55871631-55871650 | None:intergenic | 35.0% | |
| TTCTATCACTTCTCTTGGAT+GGG | + | chr5.3:55872753-55872772 | None:intergenic | 35.0% | |
| TTTGACAAGTATGCTAAGAC+TGG | - | chr5.3:55871497-55871516 | MS.gene009889:intron | 35.0% | |
| ! | ACTCAGTTTTGCTTTGCTTA+TGG | - | chr5.3:55872414-55872433 | MS.gene009889:CDS | 35.0% |
| ! | GAATCTCTATCTCTAGTTTC+TGG | + | chr5.3:55872691-55872710 | None:intergenic | 35.0% |
| ! | GATTCATATGCAATGCCTTT+TGG | - | chr5.3:55870693-55870712 | MS.gene009889:intron | 35.0% |
| ! | GCTTAGTGATTTTCCGTATT+TGG | - | chr5.3:55871941-55871960 | MS.gene009889:intron | 35.0% |
| ! | TCTCTTTTCTTCTCTTCTAC+TGG | + | chr5.3:55872836-55872855 | None:intergenic | 35.0% |
| ! | TCTTCCCTTTTATGATCTCT+TGG | + | chr5.3:55872964-55872983 | None:intergenic | 35.0% |
| ! | TTTGGTGATATCCAGATATG+GGG | - | chr5.3:55869890-55869909 | MS.gene009889:CDS | 35.0% |
| !! | AAAGGTACTGGCAAATCAAA+GGG | - | chr5.3:55869942-55869961 | MS.gene009889:CDS | 35.0% |
| !! | AGGCGTTTTTGTTTGATTGT+GGG | - | chr5.3:55870728-55870747 | MS.gene009889:intron | 35.0% |
| !! | CTCAGATATTTGTTTCTGCT+TGG | - | chr5.3:55870898-55870917 | MS.gene009889:intron | 35.0% |
| !! | GATATTTGTTTCTGCTTGGT+AGG | - | chr5.3:55870902-55870921 | MS.gene009889:intron | 35.0% |
| AAGAGGAAGCAAAGCAGAAA+AGG | - | chr5.3:55870430-55870449 | MS.gene009889:intron | 40.0% | |
| AAGATAAAAGACCAAGCAGG+AGG | - | chr5.3:55873049-55873068 | MS.gene009889:intron | 40.0% | |
| AAGGAGTGAATTGGGTTATG+GGG | - | chr5.3:55871829-55871848 | MS.gene009889:intron | 40.0% | |
| AAGGGTCTATTTAGGTCAGT+CGG | + | chr5.3:55871688-55871707 | None:intergenic | 40.0% | |
| AATGGAAGAGGAAGATGAAG+AGG | - | chr5.3:55870413-55870432 | MS.gene009889:intron | 40.0% | |
| ACAAGCTTCCAGATCTAACT+CGG | + | chr5.3:55872158-55872177 | None:intergenic | 40.0% | |
| ACCCTTGTAAACTCACGAAT+AGG | - | chr5.3:55871702-55871721 | MS.gene009889:intron | 40.0% | |
| AGAAAGCAAGCCAGTCATTA+AGG | + | chr5.3:55870880-55870899 | None:intergenic | 40.0% | |
| AGAGGAAGCAAAGCAGAAAA+GGG | - | chr5.3:55870431-55870450 | MS.gene009889:intron | 40.0% | |
| AGATAAAAGACCAAGCAGGA+GGG | - | chr5.3:55873050-55873069 | MS.gene009889:intron | 40.0% | |
| AGATAATCTGAATGGAGCTC+AGG | - | chr5.3:55870344-55870363 | MS.gene009889:intron | 40.0% | |
| AGCAAGTCAAGAGAAACACA+CGG | - | chr5.3:55873090-55873109 | MS.gene009889:intron | 40.0% | |
| AGGTTTCAGGCAGGATTATT+AGG | - | chr5.3:55870364-55870383 | MS.gene009889:intron | 40.0% | |
| ATCATAAAAGGGAAGACAGG+AGG | - | chr5.3:55872968-55872987 | MS.gene009889:intron | 40.0% | |
| ATGGTCCCAAGAAAGAAAGA+AGG | - | chr5.3:55872638-55872657 | MS.gene009889:intron | 40.0% | |
| ATTCCTGGAAAGGAGTGAAT+TGG | - | chr5.3:55871820-55871839 | MS.gene009889:intron | 40.0% | |
| CAAGAGAAGTGATAGAAGAG+AGG | - | chr5.3:55872756-55872775 | MS.gene009889:intron | 40.0% | |
| CCCAAGAAAGAAAGAAGGTA+TGG | - | chr5.3:55872643-55872662 | MS.gene009889:intron | 40.0% | |
| CCTCAACCAAATAAGCCAAA+AGG | + | chr5.3:55870711-55870730 | None:intergenic | 40.0% | |
| CTATTTAGGTCAGTCGGTAA+GGG | + | chr5.3:55871682-55871701 | None:intergenic | 40.0% | |
| CTCTCTTCTATCACTTCTCT+TGG | + | chr5.3:55872758-55872777 | None:intergenic | 40.0% | |
| CTGACGATGAATCTATGTTG+AGG | - | chr5.3:55873145-55873164 | MS.gene009889:CDS | 40.0% | |
| CTGAGCCAAGAGATCATAAA+AGG | - | chr5.3:55872956-55872975 | MS.gene009889:intron | 40.0% | |
| CTTCTATCACTTCTCTTGGA+TGG | + | chr5.3:55872754-55872773 | None:intergenic | 40.0% | |
| GAAAGGAGTGAATTGGGTTA+TGG | - | chr5.3:55871827-55871846 | MS.gene009889:intron | 40.0% | |
| GAGAAGATAAAAGACCAAGC+AGG | - | chr5.3:55873046-55873065 | MS.gene009889:intron | 40.0% | |
| GAGATCATAAAAGGGAAGAC+AGG | - | chr5.3:55872965-55872984 | MS.gene009889:intron | 40.0% | |
| GCCATACCTTCTTTCTTTCT+TGG | + | chr5.3:55872647-55872666 | None:intergenic | 40.0% | |
| GCTAACATAAGACACATTCG+AGG | - | chr5.3:55870135-55870154 | MS.gene009889:CDS | 40.0% | |
| GGAAGCAAGTTACTGTATTG+AGG | + | chr5.3:55871661-55871680 | None:intergenic | 40.0% | |
| GGTTTCAGGCAGGATTATTA+GGG | - | chr5.3:55870365-55870384 | MS.gene009889:intron | 40.0% | |
| TCTATTTAGGTCAGTCGGTA+AGG | + | chr5.3:55871683-55871702 | None:intergenic | 40.0% | |
| TTCCTGGAAAGGAGTGAATT+GGG | - | chr5.3:55871821-55871840 | MS.gene009889:intron | 40.0% | |
| TTGTAGAGAGCTGCAAATAC+TGG | - | chr5.3:55872571-55872590 | MS.gene009889:intron | 40.0% | |
| TTTGTCGAGCTTTCCAAAGA+GGG | - | chr5.3:55870466-55870485 | MS.gene009889:intron | 40.0% | |
| ! | AAGCAGCAGCTTTTCACAAT+AGG | + | chr5.3:55871925-55871944 | None:intergenic | 40.0% |
| ! | AATACTGGTTGGGGTGATAA+CGG | - | chr5.3:55872586-55872605 | MS.gene009889:intron | 40.0% |
| ! | CTTGTTAGAGACAAAGGTAC+TGG | - | chr5.3:55869930-55869949 | MS.gene009889:CDS | 40.0% |
| ! | CTTTGTTTGGGAGTTTCTAG+GGG | + | chr5.3:55872043-55872062 | None:intergenic | 40.0% |
| ! | CTTTTATGATCTCTTGGCTC+AGG | + | chr5.3:55872958-55872977 | None:intergenic | 40.0% |
| ! | GATTCCGCTTATGTTTTCGT+CGG | - | chr5.3:55869655-55869674 | MS.gene009889:CDS | 40.0% |
| ! | TCATCATCTTGATGGTCTCT+TGG | + | chr5.3:55872859-55872878 | None:intergenic | 40.0% |
| ! | TGAAGGGGATTGATAGCTAT+CGG | - | chr5.3:55871894-55871913 | MS.gene009889:intron | 40.0% |
| ! | TGGACCTCTTTTCTTCTCTT+CGG | + | chr5.3:55873260-55873279 | None:intergenic | 40.0% |
| !! | CAAAGGTACTGGCAAATCAA+AGG | - | chr5.3:55869941-55869960 | MS.gene009889:CDS | 40.0% |
| !! | GAGGCGTTTTTGTTTGATTG+TGG | - | chr5.3:55870727-55870746 | MS.gene009889:intron | 40.0% |
| !! | GCTTTGTTTGGGAGTTTCTA+GGG | + | chr5.3:55872044-55872063 | None:intergenic | 40.0% |
| !! | GGAAGCTTGTTGTTTGTAGT+TGG | - | chr5.3:55872168-55872187 | MS.gene009889:intron | 40.0% |
| !!! | AGGAGGGATGTTGATGATTT+TGG | - | chr5.3:55873066-55873085 | MS.gene009889:intron | 40.0% |
| !!! | CCTTTTGGCTTATTTGGTTG+AGG | - | chr5.3:55870708-55870727 | MS.gene009889:intron | 40.0% |
| !!! | GATTTTGGGACAAAGGTTTC+AGG | - | chr5.3:55871766-55871785 | MS.gene009889:intron | 40.0% |
| !!! | GCAATGCCTTTTGGCTTATT+TGG | - | chr5.3:55870702-55870721 | MS.gene009889:intron | 40.0% |
| !!! | TAGCTGTGATTTTGGGACAA+AGG | - | chr5.3:55871759-55871778 | MS.gene009889:intron | 40.0% |
| AAACTCCCAAACAAAGCCCA+AGG | - | chr5.3:55872047-55872066 | MS.gene009889:intron | 45.0% | |
| AACAGTGGCCAAGAGAAGAT+CGG | - | chr5.3:55872884-55872903 | MS.gene009889:CDS | 45.0% | |
| AACCCAATTCACTCCTTTCC+AGG | + | chr5.3:55871826-55871845 | None:intergenic | 45.0% | |
| AACTCCCAAACAAAGCCCAA+GGG | - | chr5.3:55872048-55872067 | MS.gene009889:intron | 45.0% | |
| AAGAATTACACAGCAGCAGC+AGG | + | chr5.3:55872344-55872363 | None:intergenic | 45.0% | |
| AAGAGAAACACACGGTAGCA+GGG | - | chr5.3:55873098-55873117 | MS.gene009889:intron | 45.0% | |
| AAGCCAGTCATTAAGGCTGT+AGG | + | chr5.3:55870873-55870892 | None:intergenic | 45.0% | |
| AAGGATGAAACCTAGGCAAG+CGG | - | chr5.3:55871557-55871576 | MS.gene009889:intron | 45.0% | |
| ACATAAGCGAAGACGCTTCA+TGG | - | chr5.3:55869617-55869636 | MS.gene009889:CDS | 45.0% | |
| AGAATTACACAGCAGCAGCA+GGG | + | chr5.3:55872343-55872362 | None:intergenic | 45.0% | |
| AGAGAGCTGCAAATACTGGT+TGG | - | chr5.3:55872575-55872594 | MS.gene009889:intron | 45.0% | |
| AGGTAGCAGGACAAATGATC+TGG | + | chr5.3:55872511-55872530 | None:intergenic | 45.0% | |
| ATCAACAACCTCCCCATATC+TGG | + | chr5.3:55869904-55869923 | None:intergenic | 45.0% | |
| ATTCCCTTCGATTTCACCGA+GGG | - | chr5.3:55869682-55869701 | MS.gene009889:CDS | 45.0% | |
| CTGACCGAAGAGAAGAAAAG+AGG | - | chr5.3:55873253-55873272 | MS.gene009889:CDS | 45.0% | |
| CTGGCAACTAAGCAGTAGAA+GGG | + | chr5.3:55872492-55872511 | None:intergenic | 45.0% | |
| GAGAAGAAAAGAGGTCCAGA+AGG | - | chr5.3:55873262-55873281 | MS.gene009889:CDS | 45.0% | |
| GTTTGTCGAGCTTTCCAAAG+AGG | - | chr5.3:55870465-55870484 | MS.gene009889:intron | 45.0% | |
| TATTCCCTTCGATTTCACCG+AGG | - | chr5.3:55869681-55869700 | MS.gene009889:CDS | 45.0% | |
| TCCCAAAATCACAGCTATGC+CGG | + | chr5.3:55871756-55871775 | None:intergenic | 45.0% | |
| TCTGGCAACTAAGCAGTAGA+AGG | + | chr5.3:55872493-55872512 | None:intergenic | 45.0% | |
| TTCAGGCAGGATTATTAGGG+TGG | - | chr5.3:55870368-55870387 | MS.gene009889:intron | 45.0% | |
| TTGTCGAGCTTTCCAAAGAG+GGG | - | chr5.3:55870467-55870486 | MS.gene009889:intron | 45.0% | |
| ! | ACCGGCATAGCTGTGATTTT+GGG | - | chr5.3:55871752-55871771 | MS.gene009889:intron | 45.0% |
| ! | AGAGCTGCAAATACTGGTTG+GGG | - | chr5.3:55872577-55872596 | MS.gene009889:intron | 45.0% |
| ! | ATACTGGTTGGGGTGATAAC+GGG | - | chr5.3:55872587-55872606 | MS.gene009889:intron | 45.0% |
| ! | CGAAGCACTAATCTTGCTGT+TGG | - | chr5.3:55869993-55870012 | MS.gene009889:CDS | 45.0% |
| ! | GAGAGCTGCAAATACTGGTT+GGG | - | chr5.3:55872576-55872595 | MS.gene009889:intron | 45.0% |
| ! | TACCGGCATAGCTGTGATTT+TGG | - | chr5.3:55871751-55871770 | MS.gene009889:intron | 45.0% |
| ! | TTTGGAGGGTGAGAAGTATG+AGG | + | chr5.3:55872010-55872029 | None:intergenic | 45.0% |
| ! | TTTTTATCCTCCGCTTGCCT+AGG | + | chr5.3:55871570-55871589 | None:intergenic | 45.0% |
| !! | CTAGTTTCTGGAATGCGATC+TGG | + | chr5.3:55872679-55872698 | None:intergenic | 45.0% |
| !! | GGCTTTGTTTGGGAGTTTCT+AGG | + | chr5.3:55872045-55872064 | None:intergenic | 45.0% |
| !! | GTGATAACGGGATCGCAAAA+GGG | - | chr5.3:55872599-55872618 | MS.gene009889:intron | 45.0% |
| !! | TGATAACGGGATCGCAAAAG+GGG | - | chr5.3:55872600-55872619 | MS.gene009889:intron | 45.0% |
| !! | TTTCTGGAATGCGATCTGGT+TGG | + | chr5.3:55872675-55872694 | None:intergenic | 45.0% |
| AACAGCGATCACATCACCCT+CGG | + | chr5.3:55869701-55869720 | None:intergenic | 50.0% | |
| ACCGCCGACGAAAACATAAG+CGG | + | chr5.3:55869662-55869681 | None:intergenic | 50.0% | |
| ACGCCTACAGCCTTAATGAC+TGG | - | chr5.3:55870867-55870886 | MS.gene009889:intron | 50.0% | |
| ATCACCCTCGGTGAAATCGA+AGG | + | chr5.3:55869689-55869708 | None:intergenic | 50.0% | |
| ATGCGCTTCACCAGTGTTAG+CGG | + | chr5.3:55869565-55869584 | None:intergenic | 50.0% | |
| CAAGAGAAACACACGGTAGC+AGG | - | chr5.3:55873097-55873116 | MS.gene009889:intron | 50.0% | |
| CAGAGCCCGTGAAAATGAGA+TGG | - | chr5.3:55872717-55872736 | MS.gene009889:intron | 50.0% | |
| CAGATCCTCAACCAGTGTCT+AGG | + | chr5.3:55871199-55871218 | None:intergenic | 50.0% | |
| CAGTATTGTGCCATGCCCTT+GGG | + | chr5.3:55872066-55872085 | None:intergenic | 50.0% | |
| CGAACATGCCGAGTTAGATC+TGG | - | chr5.3:55872147-55872166 | MS.gene009889:intron | 50.0% | |
| CTGAATGGAGCTCAGGTTTC+AGG | - | chr5.3:55870351-55870370 | MS.gene009889:intron | 50.0% | |
| GAAAGCTCGACAAACACCAC+GGG | + | chr5.3:55870460-55870479 | None:intergenic | 50.0% | |
| GATAACTAGGGCCTAGACAC+TGG | - | chr5.3:55871185-55871204 | MS.gene009889:intron | 50.0% | |
| GGAAAGCTCGACAAACACCA+CGG | + | chr5.3:55870461-55870480 | None:intergenic | 50.0% | |
| GGAAGCAAAGCAGAAAAGGG+AGG | - | chr5.3:55870434-55870453 | MS.gene009889:intron | 50.0% | |
| GGTGATATCCAGATATGGGG+AGG | - | chr5.3:55869893-55869912 | MS.gene009889:CDS | 50.0% | |
| TCACCCTCGGTGAAATCGAA+GGG | + | chr5.3:55869688-55869707 | None:intergenic | 50.0% | |
| TCAGTATTGTGCCATGCCCT+TGG | + | chr5.3:55872067-55872086 | None:intergenic | 50.0% | |
| TCATCAACATCCCTCCTGCT+TGG | + | chr5.3:55873063-55873082 | None:intergenic | 50.0% | |
| ! | CATCTCATTTTCACGGGCTC+TGG | + | chr5.3:55872719-55872738 | None:intergenic | 50.0% |
| ! | CTAGACACTGGTTGAGGATC+TGG | - | chr5.3:55871197-55871216 | MS.gene009889:intron | 50.0% |
| ! | TCCGCTTATGTTTTCGTCGG+CGG | - | chr5.3:55869658-55869677 | MS.gene009889:CDS | 50.0% |
| ! | TGTTTGGGAGTTTCTAGGGG+CGG | + | chr5.3:55872040-55872059 | None:intergenic | 50.0% |
| !! | AAGGTGTTGCGAAGGCAAGA+TGG | - | chr5.3:55872781-55872800 | MS.gene009889:intron | 50.0% |
| !! | CATGCCCTTGGGCTTTGTTT+GGG | + | chr5.3:55872055-55872074 | None:intergenic | 50.0% |
| !! | GAGAGGAAAAGGTGTTGCGA+AGG | - | chr5.3:55872773-55872792 | MS.gene009889:intron | 50.0% |
| !! | GGTGATAACGGGATCGCAAA+AGG | - | chr5.3:55872598-55872617 | MS.gene009889:intron | 50.0% |
| ATGGAGCTCAGGTTTCAGGC+AGG | - | chr5.3:55870355-55870374 | MS.gene009889:intron | 55.0% | |
| CACGAGTACACTCCCCTCTT+TGG | + | chr5.3:55870482-55870501 | None:intergenic | 55.0% | |
| CCAAACAAAGCCCAAGGGCA+TGG | - | chr5.3:55872053-55872072 | MS.gene009889:intron | 55.0% | |
| CTCCTACGCCGATCTTCTCT+TGG | + | chr5.3:55872895-55872914 | None:intergenic | 55.0% | |
| GATGAAACCTAGGCAAGCGG+AGG | - | chr5.3:55871560-55871579 | MS.gene009889:intron | 55.0% | |
| TGCGCTTCACCAGTGTTAGC+GGG | + | chr5.3:55869564-55869583 | None:intergenic | 55.0% | |
| ! | CAAAGAGGGGAGTGTACTCG+TGG | - | chr5.3:55870480-55870499 | MS.gene009889:intron | 55.0% |
| ! | GGAGTTTCTAGGGGCGGAAA+GGG | + | chr5.3:55872034-55872053 | None:intergenic | 55.0% |
| ! | TAGGGCCTAGACACTGGTTG+AGG | - | chr5.3:55871191-55871210 | MS.gene009889:intron | 55.0% |
| !! | CCATGCCCTTGGGCTTTGTT+TGG | + | chr5.3:55872056-55872075 | None:intergenic | 55.0% |
| !! | TGCTTGGTAGGCTTGCTGTC+TGG | - | chr5.3:55870914-55870933 | MS.gene009889:intron | 55.0% |
| AAGCAGAAAAGGGAGGCCCG+TGG | - | chr5.3:55870441-55870460 | MS.gene009889:intron | 60.0% | |
| CACACGGTAGCAGGGAAGAG+AGG | - | chr5.3:55873106-55873125 | MS.gene009889:intron | 60.0% | |
| GGCCAAGAGAAGATCGGCGT+AGG | - | chr5.3:55872890-55872909 | MS.gene009889:CDS | 60.0% | |
| TCTAGGGGCGGAAAGGGCTT+TGG | + | chr5.3:55872028-55872047 | None:intergenic | 60.0% | |
| ! | GGGAGTTTCTAGGGGCGGAA+AGG | + | chr5.3:55872035-55872054 | None:intergenic | 60.0% |
| ! | AGGGGCGGAAAGGGCTTTGG+AGG | + | chr5.3:55872025-55872044 | None:intergenic | 65.0% |
| ! | GGGGAGTGTACTCGTGGAGC+TGG | - | chr5.3:55870486-55870505 | MS.gene009889:intron | 65.0% |
| !! | GGGGCGGAAAGGGCTTTGGA+GGG | + | chr5.3:55872024-55872043 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 55869556 | 55873287 | 55869556 | ID=MS.gene009889 |
| chr5.3 | mRNA | 55869556 | 55873287 | 55869556 | ID=MS.gene009889.t1;Parent=MS.gene009889 |
| chr5.3 | exon | 55873115 | 55873287 | 55873115 | ID=MS.gene009889.t1.exon1;Parent=MS.gene009889.t1 |
| chr5.3 | CDS | 55873115 | 55873287 | 55873115 | ID=cds.MS.gene009889.t1;Parent=MS.gene009889.t1 |
| chr5.3 | exon | 55872829 | 55872938 | 55872829 | ID=MS.gene009889.t1.exon2;Parent=MS.gene009889.t1 |
| chr5.3 | CDS | 55872829 | 55872938 | 55872829 | ID=cds.MS.gene009889.t1;Parent=MS.gene009889.t1 |
| chr5.3 | exon | 55872310 | 55872497 | 55872310 | ID=MS.gene009889.t1.exon3;Parent=MS.gene009889.t1 |
| chr5.3 | CDS | 55872310 | 55872497 | 55872310 | ID=cds.MS.gene009889.t1;Parent=MS.gene009889.t1 |
| chr5.3 | exon | 55869556 | 55870266 | 55869556 | ID=MS.gene009889.t1.exon4;Parent=MS.gene009889.t1 |
| chr5.3 | CDS | 55869556 | 55870266 | 55869556 | ID=cds.MS.gene009889.t1;Parent=MS.gene009889.t1 |
| Gene Sequence |
| Protein sequence |
