Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009925.t1 | RHN56435.1 | 98.1 | 517 | 10 | 0 | 1 | 517 | 79 | 595 | 3.70E-285 | 990.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009925.t1 | Q66GI9 | 69.3 | 512 | 141 | 6 | 11 | 518 | 34 | 533 | 3.3e-194 | 679.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009925.t1 | G7KE37 | 98.1 | 517 | 10 | 0 | 1 | 517 | 1 | 517 | 2.7e-285 | 990.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene41133 | MS.gene009925 | PPI |
MS.gene30561 | MS.gene009925 | PPI |
MS.gene021154 | MS.gene009925 | PPI |
MS.gene93642 | MS.gene009925 | PPI |
MS.gene009925 | MS.gene45934 | PPI |
MS.gene054996 | MS.gene009925 | PPI |
MS.gene004003 | MS.gene009925 | PPI |
MS.gene67345 | MS.gene009925 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009925.t1 | MTR_5g069630 | 98.066 | 517 | 10 | 0 | 1 | 517 | 1 | 517 | 0.0 | 1025 |
MS.gene009925.t1 | MTR_7g066780 | 56.115 | 417 | 179 | 1 | 96 | 512 | 93 | 505 | 2.97e-166 | 483 |
MS.gene009925.t1 | MTR_8g030600 | 39.627 | 429 | 250 | 3 | 84 | 512 | 167 | 586 | 1.09e-105 | 330 |
MS.gene009925.t1 | MTR_3g463080 | 40.528 | 417 | 241 | 2 | 96 | 512 | 105 | 514 | 9.34e-104 | 323 |
MS.gene009925.t1 | MTR_7g077830 | 39.568 | 417 | 245 | 2 | 96 | 512 | 123 | 532 | 2.62e-103 | 322 |
MS.gene009925.t1 | MTR_8g030600 | 40.882 | 340 | 193 | 2 | 84 | 423 | 167 | 498 | 1.48e-83 | 270 |
MS.gene009925.t1 | MTR_4g116030 | 33.092 | 414 | 255 | 6 | 97 | 499 | 110 | 512 | 2.65e-65 | 223 |
MS.gene009925.t1 | MTR_4g030900 | 29.545 | 440 | 286 | 7 | 97 | 515 | 7 | 443 | 2.43e-54 | 191 |
MS.gene009925.t1 | MTR_2g027710 | 39.877 | 163 | 98 | 0 | 314 | 476 | 72 | 234 | 6.83e-40 | 146 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009925.t1 | AT3G46980 | 69.336 | 512 | 141 | 6 | 11 | 518 | 82 | 581 | 0.0 | 692 |
MS.gene009925.t1 | AT3G46980 | 69.336 | 512 | 141 | 6 | 11 | 518 | 34 | 533 | 0.0 | 691 |
MS.gene009925.t1 | AT3G46980 | 69.336 | 512 | 141 | 6 | 11 | 518 | 34 | 533 | 0.0 | 690 |
MS.gene009925.t1 | AT3G46980 | 75.141 | 354 | 85 | 2 | 167 | 518 | 1 | 353 | 0.0 | 554 |
MS.gene009925.t1 | AT3G46980 | 75.141 | 354 | 85 | 2 | 167 | 518 | 1 | 353 | 0.0 | 554 |
MS.gene009925.t1 | AT3G46980 | 75.141 | 354 | 85 | 2 | 167 | 518 | 1 | 353 | 0.0 | 554 |
MS.gene009925.t1 | AT3G46980 | 75.141 | 354 | 85 | 2 | 167 | 518 | 1 | 353 | 0.0 | 554 |
MS.gene009925.t1 | AT2G38060 | 56.086 | 419 | 178 | 2 | 96 | 512 | 97 | 511 | 5.16e-164 | 477 |
MS.gene009925.t1 | AT3G46980 | 73.793 | 290 | 73 | 2 | 231 | 518 | 1 | 289 | 2.87e-156 | 449 |
MS.gene009925.t1 | AT2G38060 | 56.438 | 365 | 153 | 2 | 96 | 458 | 97 | 457 | 9.33e-140 | 417 |
MS.gene009925.t1 | AT4G00370 | 35.756 | 509 | 303 | 6 | 18 | 512 | 41 | 539 | 6.75e-106 | 329 |
MS.gene009925.t1 | AT2G29650 | 40.376 | 426 | 245 | 3 | 87 | 512 | 94 | 510 | 5.38e-104 | 323 |
MS.gene009925.t1 | AT2G29650 | 40.250 | 400 | 232 | 2 | 113 | 512 | 6 | 398 | 4.57e-99 | 307 |
MS.gene009925.t1 | AT2G29650 | 40.506 | 395 | 228 | 2 | 118 | 512 | 1 | 388 | 1.42e-98 | 305 |
MS.gene009925.t1 | AT2G29650 | 40.895 | 313 | 177 | 2 | 87 | 399 | 94 | 398 | 3.07e-74 | 242 |
MS.gene009925.t1 | AT5G20380 | 32.847 | 411 | 256 | 5 | 96 | 498 | 97 | 495 | 6.55e-65 | 221 |
MS.gene009925.t1 | AT5G20380 | 32.847 | 411 | 256 | 5 | 96 | 498 | 149 | 547 | 2.04e-64 | 221 |
MS.gene009925.t1 | AT5G44370 | 30.023 | 433 | 282 | 8 | 96 | 515 | 8 | 432 | 1.99e-55 | 193 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGATTTCTCGTGAACTTTC+AGG | 0.171662 | 5.3:-55366765 | MS.gene009925:intron |
CTTGGATGTCGTCAACTTAA+AGG | 0.172553 | 5.3:-55363809 | MS.gene009925:intron |
GGAACACTTGCTGCTATAAT+TGG | 0.202615 | 5.3:-55366108 | MS.gene009925:CDS |
CGCTTTCTCTGGAATTGTTC+AGG | 0.218765 | 5.3:-55370419 | MS.gene009925:intron |
CAGAGGCGCCATTGGAAAAT+TGG | 0.238800 | 5.3:+55370683 | None:intergenic |
TTGGTTTGTCTGGGTTTCTT+TGG | 0.242510 | 5.3:-55368326 | MS.gene009925:CDS |
TGCTGCAGAGACTTCCCTTT+TGG | 0.259420 | 5.3:-55369238 | MS.gene009925:CDS |
CCTTACTGAGTTGAAGTATA+TGG | 0.266991 | 5.3:+55367780 | None:intergenic |
GAGTATGGTGCGGTGGCTTT+TGG | 0.271975 | 5.3:+55370762 | None:intergenic |
ACCTTCTTCGGTTGTCCTCT+TGG | 0.276794 | 5.3:-55363827 | MS.gene009925:CDS |
GGTCCTGGGGTTAGCCTCAT+TGG | 0.280489 | 5.3:-55366866 | MS.gene009925:CDS |
GGGTATTTGCTTTCACCTAT+AGG | 0.295947 | 5.3:-55369351 | MS.gene009925:CDS |
TGAACTACCTTGCTGGCTTT+TGG | 0.308899 | 5.3:-55367597 | MS.gene009925:CDS |
CTGCAAACGCCATGCATAGC+TGG | 0.327776 | 5.3:-55368122 | MS.gene009925:CDS |
GGTTTCTTTGGGTGTTGGTC+TGG | 0.335196 | 5.3:-55368314 | MS.gene009925:CDS |
ATGTCGCAAGGCGGTATATT+TGG | 0.340618 | 5.3:-55368363 | MS.gene009925:CDS |
AACTACTTTCCAACCTTCTT+CGG | 0.343233 | 5.3:-55363839 | MS.gene009925:CDS |
GCCTTTGGCTTGAAATCCTT+TGG | 0.344433 | 5.3:-55366794 | MS.gene009925:CDS |
GTTCCTTTATCTGTCGCTAA+TGG | 0.349256 | 5.3:-55370451 | MS.gene009925:CDS |
CAACCATTAGCGACAGATAA+AGG | 0.362899 | 5.3:+55370448 | None:intergenic |
GTCTGGGTTTCTTTGGGTGT+TGG | 0.364306 | 5.3:-55368319 | MS.gene009925:CDS |
TGGTTTGTCTGGGTTTCTTT+GGG | 0.370638 | 5.3:-55368325 | MS.gene009925:CDS |
GCCCTTGCCCGTTCAGTTTG+AGG | 0.373252 | 5.3:+55368453 | None:intergenic |
GCTTGGCTAACATTAGCCTT+TGG | 0.378702 | 5.3:-55366809 | MS.gene009925:CDS |
CTTGGTTTAGTGCCGTTCCA+TGG | 0.378789 | 5.3:-55367636 | MS.gene009925:CDS |
GGTTGGACTCGCGCTTTCTC+TGG | 0.382881 | 5.3:-55370430 | MS.gene009925:CDS |
GAGATCGCACCACAGTATTC+TGG | 0.387993 | 5.3:-55366652 | MS.gene009925:CDS |
TAGAGTAAAGGCAGTAGAAA+AGG | 0.394354 | 5.3:+55365998 | None:intergenic |
TCGTTATAACAGCGATGTTA+CGG | 0.400343 | 5.3:-55363922 | MS.gene009925:intron |
TGAGTGGAAGTTGGAGAGTA+TGG | 0.408735 | 5.3:+55370747 | None:intergenic |
AAGGGAGCGGAGAGAGGCAG+AGG | 0.413005 | 5.3:+55370666 | None:intergenic |
GTTGTTGTTGTTTGTGTTGG+TGG | 0.418198 | 5.3:+55370587 | None:intergenic |
TGTCCGTGCTTTGCTTGGTC+TGG | 0.418503 | 5.3:-55369205 | MS.gene009925:CDS |
GAGAGAGGCAGAGGCGCCAT+TGG | 0.422174 | 5.3:+55370675 | None:intergenic |
GCTATCATGAACTACCTTGC+TGG | 0.423028 | 5.3:-55367604 | MS.gene009925:CDS |
TTCTACTGCCTTTACTCTAC+AGG | 0.423078 | 5.3:-55365994 | MS.gene009925:CDS |
CTTGCTGTCCGTGCTTTGCT+TGG | 0.424049 | 5.3:-55369210 | MS.gene009925:CDS |
GCTCATTCACTGCAGTCCAT+TGG | 0.433703 | 5.3:-55366896 | MS.gene009925:intron |
GAAGTTGTTGTTGTTTGTGT+TGG | 0.434792 | 5.3:+55370584 | None:intergenic |
GCTGTTGGAATTTCGATGGC+TGG | 0.440401 | 5.3:-55368432 | MS.gene009925:CDS |
TGGCAAAGTGGTAATGGCTT+GGG | 0.443751 | 5.3:-55369301 | MS.gene009925:CDS |
CTATGGTGGCAAAGTGGTAA+TGG | 0.445558 | 5.3:-55369307 | MS.gene009925:CDS |
AGGTATATCATGTGGATCTC+AGG | 0.445867 | 5.3:-55367666 | MS.gene009925:CDS |
AGTGGTGGCGATGCTCGCTT+TGG | 0.452450 | 5.3:-55370521 | MS.gene009925:CDS |
AAAGGGCAGCAAGAAAATAT+AGG | 0.454954 | 5.3:+55366016 | None:intergenic |
GAACGCGTGAGGTTGAGTTT+TGG | 0.455642 | 5.3:+55370724 | None:intergenic |
CTCTTTCTCCTGTAGAGTAA+AGG | 0.456679 | 5.3:+55365986 | None:intergenic |
TTGAAATCCTTTGGTCACTC+TGG | 0.459693 | 5.3:-55366785 | MS.gene009925:CDS |
TGGCTTGGGGTGTGGTATTG+TGG | 0.461373 | 5.3:-55369287 | MS.gene009925:CDS |
CACGGAGGCGGAGAAGGGAG+CGG | 0.461840 | 5.3:+55370653 | None:intergenic |
CTTACTGAGTTGAAGTATAT+GGG | 0.464041 | 5.3:+55367781 | None:intergenic |
ACTGAACGGGCAAGGGCTGT+TGG | 0.465381 | 5.3:-55368447 | MS.gene009925:CDS |
CTTTATCTGTCGCTAATGGT+TGG | 0.473202 | 5.3:-55370447 | MS.gene009925:CDS |
ACCAACATTCCTCCACCTAT+AGG | 0.473248 | 5.3:+55369336 | None:intergenic |
ACCGCCTTGCGACATGAGAA+TGG | 0.474302 | 5.3:+55368371 | None:intergenic |
ACCCCTCAGTTGCTTCTGCT+TGG | 0.475369 | 5.3:-55366826 | MS.gene009925:CDS |
TTAACTTTCTTTGCCTCCAC+AGG | 0.476777 | 5.3:+55368201 | None:intergenic |
TTGGTTTAGTGCCGTTCCAT+GGG | 0.479267 | 5.3:-55367635 | MS.gene009925:CDS |
TTTCAGCTTGGATGTGCGAT+AGG | 0.482350 | 5.3:-55368408 | MS.gene009925:CDS |
CGGACCCACCGGTGCGAAGA+TGG | 0.487565 | 5.3:+55363714 | None:intergenic |
GCGGAGAAGGGAGCGGAGAG+AGG | 0.488710 | 5.3:+55370660 | None:intergenic |
ATGGTTTCCTCAAACTGAAC+GGG | 0.489867 | 5.3:-55368460 | MS.gene009925:CDS |
TTCCTCAAACTGAACGGGCA+AGG | 0.491223 | 5.3:-55368455 | MS.gene009925:CDS |
GGACAGCAAGTAAAGCCAAA+AGG | 0.496066 | 5.3:+55369223 | None:intergenic |
TGAGTTGAACTGAGCGTCGT+TGG | 0.497033 | 5.3:+55370624 | None:intergenic |
GCTTTGCTTGGTCTGGCTGA+AGG | 0.500123 | 5.3:-55369198 | MS.gene009925:CDS |
AGTGGTAATGGCTTGGGGTG+TGG | 0.502154 | 5.3:-55369295 | MS.gene009925:CDS |
ACCTATAGGTGGAGGAATGT+TGG | 0.502436 | 5.3:-55369337 | MS.gene009925:CDS |
TGCAAACGCCATGCATAGCT+GGG | 0.502609 | 5.3:-55368121 | MS.gene009925:intron |
GCTGCTATAATTGGAACAGT+TGG | 0.504312 | 5.3:-55366099 | MS.gene009925:CDS |
AAGAAACACGGAGGCGGAGA+AGG | 0.506280 | 5.3:+55370647 | None:intergenic |
GGGTAATGTTGGTGGTTTAG+CGG | 0.507274 | 5.3:+55370783 | None:intergenic |
ATAATTGGAACAGTTGGAGC+TGG | 0.507919 | 5.3:-55366093 | MS.gene009925:CDS |
GACAGCAAGTAAAGCCAAAA+GGG | 0.510055 | 5.3:+55369224 | None:intergenic |
GGAATGTTGGTGGATAACTA+TGG | 0.515203 | 5.3:-55369324 | MS.gene009925:CDS |
GATATCTGAGGACTTTGGTC+GGG | 0.515342 | 5.3:+55368270 | None:intergenic |
GAAGGTTGGAAAGTAGTTGA+GGG | 0.515687 | 5.3:+55363844 | None:intergenic |
TCCTCAAACTGAACGGGCAA+GGG | 0.516195 | 5.3:-55368454 | MS.gene009925:CDS |
TCAGATATCAAAATATGAGC+TGG | 0.520475 | 5.3:-55368256 | MS.gene009925:CDS |
ATCTACCATCTTCGCACCGG+TGG | 0.520518 | 5.3:-55363719 | MS.gene009925:CDS |
GTGGCAAAGTGGTAATGGCT+TGG | 0.521444 | 5.3:-55369302 | MS.gene009925:CDS |
GGCAAAGTGGTAATGGCTTG+GGG | 0.524292 | 5.3:-55369300 | MS.gene009925:CDS |
GTAGTTGAGGGTTGTACCAC+CGG | 0.524491 | 5.3:+55363856 | None:intergenic |
CCGCCTTGCGACATGAGAAT+GGG | 0.526447 | 5.3:+55368372 | None:intergenic |
TTGCTTTCACCTATAGGTGG+AGG | 0.527774 | 5.3:-55369345 | MS.gene009925:CDS |
AGGGAAGTCTCTGCAGCAAA+GGG | 0.528499 | 5.3:+55369243 | None:intergenic |
GGTTGCTCCGCCGAAAATGA+TGG | 0.530785 | 5.3:+55370807 | None:intergenic |
TGCCGTTCCATGGGTTGTGA+TGG | 0.531447 | 5.3:-55367626 | MS.gene009925:CDS |
AAGGGAAGTCTCTGCAGCAA+AGG | 0.533373 | 5.3:+55369242 | None:intergenic |
TATTTGCTTTCACCTATAGG+TGG | 0.534223 | 5.3:-55369348 | MS.gene009925:CDS |
GTAGGAATGGCAAATACTGC+TGG | 0.539160 | 5.3:-55366129 | MS.gene009925:intron |
TGATATCTGAGGACTTTGGT+CGG | 0.539268 | 5.3:+55368269 | None:intergenic |
TTCAGCTTGGATGTGCGATA+GGG | 0.540655 | 5.3:-55368407 | MS.gene009925:CDS |
TGGATCTCAGGCAAGCAGCT+TGG | 0.542287 | 5.3:-55367654 | MS.gene009925:CDS |
AGAAACACGGAGGCGGAGAA+GGG | 0.545254 | 5.3:+55370648 | None:intergenic |
TCCAAGAGGACAACCGAAGA+AGG | 0.547095 | 5.3:+55363826 | None:intergenic |
GCATGAATAACATGGTGGCC+AGG | 0.547555 | 5.3:-55369161 | MS.gene009925:intron |
TCGATGGCTGGATTTCAGCT+TGG | 0.549464 | 5.3:-55368420 | MS.gene009925:CDS |
GAGCTAGTTGGTTCATTCCG+AGG | 0.550210 | 5.3:-55366060 | MS.gene009925:CDS |
AGAGGACAACCGAAGAAGGT+TGG | 0.551754 | 5.3:+55363830 | None:intergenic |
ATTGACTCGTAAGATTATGC+AGG | 0.555441 | 5.3:-55367539 | MS.gene009925:intron |
AAAGTAAGCGTCTGAAAGGA+GGG | 0.557823 | 5.3:+55368172 | None:intergenic |
AGAGTAAAGGCAGTAGAAAA+GGG | 0.560382 | 5.3:+55365999 | None:intergenic |
AAGGGCTGTTGGAATTTCGA+TGG | 0.561576 | 5.3:-55368436 | MS.gene009925:CDS |
TCTCCCATTCTCATGTCGCA+AGG | 0.564637 | 5.3:-55368375 | MS.gene009925:CDS |
TTTGAAAGTAAGCGTCTGAA+AGG | 0.567422 | 5.3:+55368168 | None:intergenic |
TCGGAAATGGTGAACGCGTG+AGG | 0.567551 | 5.3:+55370713 | None:intergenic |
TACTTTCAAAGATGCCAACA+TGG | 0.572670 | 5.3:-55368155 | MS.gene009925:CDS |
ACCAAAGGATTTCAAGCCAA+AGG | 0.574114 | 5.3:+55366793 | None:intergenic |
TATCAACAACACGGACCCAC+CGG | 0.575386 | 5.3:+55363703 | None:intergenic |
AGAAGGTTGGAAAGTAGTTG+AGG | 0.578133 | 5.3:+55363843 | None:intergenic |
CAGATCTACCATCTTCGCAC+CGG | 0.580931 | 5.3:-55363722 | MS.gene009925:CDS |
GAAAGTAAGCGTCTGAAAGG+AGG | 0.584605 | 5.3:+55368171 | None:intergenic |
ATGATAGCCATCACAACCCA+TGG | 0.591261 | 5.3:+55367619 | None:intergenic |
TGTTATGTGCAACTTTCTAC+CGG | 0.592361 | 5.3:-55363875 | MS.gene009925:CDS |
CGTTGGAAGAAACACGGAGG+CGG | 0.593444 | 5.3:+55370641 | None:intergenic |
CCCAGGACCAACAAAACCAA+TGG | 0.594055 | 5.3:+55366880 | None:intergenic |
GCCACCATGTTATTCATGCA+AGG | 0.595628 | 5.3:+55369165 | None:intergenic |
TCTACCATCTTCGCACCGGT+GGG | 0.598106 | 5.3:-55363718 | MS.gene009925:CDS |
TATAGGTGGAGGAATGTTGG+TGG | 0.598602 | 5.3:-55369334 | MS.gene009925:CDS |
TCCGCCGAAAATGATGGCGG+AGG | 0.602078 | 5.3:+55370813 | None:intergenic |
GATGGTTTCCTCAAACTGAA+CGG | 0.605328 | 5.3:-55368461 | MS.gene009925:CDS |
AGCCATCACAACCCATGGAA+CGG | 0.607117 | 5.3:+55367624 | None:intergenic |
CAGTATTCTGGTGTTATACA+CGG | 0.607350 | 5.3:-55366640 | MS.gene009925:intron |
AAGCATTACCCAGCTATGCA+TGG | 0.612596 | 5.3:+55368113 | None:intergenic |
AGCGACAGATAAAGGAACAA+TGG | 0.618871 | 5.3:+55370456 | None:intergenic |
AGCCAAGCAGAAGCAACTGA+GGG | 0.619076 | 5.3:+55366824 | None:intergenic |
CACTTCTGAACGAGTCAAAG+TGG | 0.620499 | 5.3:-55370539 | MS.gene009925:CDS |
TTGCAGTAGCTAAACCAATG+AGG | 0.620937 | 5.3:+55366852 | None:intergenic |
TCTTCCTTGCATGAATAACA+TGG | 0.629861 | 5.3:-55369169 | MS.gene009925:CDS |
TCCCATATAGGTATATCATG+TGG | 0.631161 | 5.3:-55367674 | MS.gene009925:intron |
GTGATGAACTCAGTGAAACT+CGG | 0.632885 | 5.3:+55370559 | None:intergenic |
TATCTGACCAAAAGCCAGCA+AGG | 0.634373 | 5.3:+55367590 | None:intergenic |
GCAGCGATTAGAGACCATGT+TGG | 0.635792 | 5.3:+55368141 | None:intergenic |
CAGCCAGACCAAGCAAAGCA+CGG | 0.641798 | 5.3:+55369202 | None:intergenic |
TAATGTTGGTGGTTTAGCGG+CGG | 0.642538 | 5.3:+55370786 | None:intergenic |
TAGCCAAGCAGAAGCAACTG+AGG | 0.650053 | 5.3:+55366823 | None:intergenic |
TATGTGCAACTTTCTACCGG+TGG | 0.650534 | 5.3:-55363872 | MS.gene009925:CDS |
CCCATTCTCATGTCGCAAGG+CGG | 0.664754 | 5.3:-55368372 | MS.gene009925:CDS |
AAACCAATGAGGCTAACCCC+AGG | 0.666606 | 5.3:+55366863 | None:intergenic |
TTAAGTTGACGACATCCAAG+AGG | 0.668786 | 5.3:+55363812 | None:intergenic |
AGTTGGAGAGTATGGTGCGG+TGG | 0.674019 | 5.3:+55370755 | None:intergenic |
TTCTGAACGAGTCAAAGTGG+TGG | 0.680019 | 5.3:-55370536 | MS.gene009925:CDS |
CGACACTAGAACAACCGCGA+CGG | 0.683368 | 5.3:+55363679 | None:intergenic |
TGCTCCGCCGAAAATGATGG+CGG | 0.686657 | 5.3:+55370810 | None:intergenic |
TCAGATATGATGATACAAAG+TGG | 0.691862 | 5.3:-55367574 | MS.gene009925:CDS |
GAGAAATCCAGAGTGACCAA+AGG | 0.692248 | 5.3:+55366778 | None:intergenic |
CGCGACGGATATCAACAACA+CGG | 0.696245 | 5.3:+55363694 | None:intergenic |
GCCAAGCAGAAGCAACTGAG+GGG | 0.703992 | 5.3:+55366825 | None:intergenic |
GGATAACTATGGTGGCAAAG+TGG | 0.708063 | 5.3:-55369313 | MS.gene009925:CDS |
CGTGTTGTTGATATCCGTCG+CGG | 0.708144 | 5.3:-55363693 | MS.gene009925:CDS |
GAGCGTCGTTGGAAGAAACA+CGG | 0.710920 | 5.3:+55370635 | None:intergenic |
TCCTTGCATGAATAACATGG+TGG | 0.712615 | 5.3:-55369166 | MS.gene009925:CDS |
AAGTAAGCGTCTGAAAGGAG+GGG | 0.721220 | 5.3:+55368173 | None:intergenic |
ATGTTGGTGGATAACTATGG+TGG | 0.730881 | 5.3:-55369321 | MS.gene009925:CDS |
AGCGATGTTACGGATCTCTG+TGG | 0.732670 | 5.3:-55363912 | MS.gene009925:CDS |
GGAAGTTGGAGAGTATGGTG+CGG | 0.748375 | 5.3:+55370752 | None:intergenic |
TGTATAACACCAGAATACTG+TGG | 0.748590 | 5.3:+55366643 | None:intergenic |
CGTCGTTGGAAGAAACACGG+AGG | 0.798020 | 5.3:+55370638 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 55363674 | 55370839 | 55363674 | ID=MS.gene009925 |
chr5.3 | mRNA | 55363674 | 55370839 | 55363674 | ID=MS.gene009925.t1;Parent=MS.gene009925 |
chr5.3 | exon | 55370420 | 55370839 | 55370420 | ID=MS.gene009925.t1.exon1;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55370420 | 55370839 | 55370420 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55369162 | 55369388 | 55369162 | ID=MS.gene009925.t1.exon2;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55369162 | 55369388 | 55369162 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55368122 | 55368482 | 55368122 | ID=MS.gene009925.t1.exon3;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55368122 | 55368482 | 55368122 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55367786 | 55367830 | 55367786 | ID=MS.gene009925.t1.exon4;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55367786 | 55367830 | 55367786 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55367540 | 55367686 | 55367540 | ID=MS.gene009925.t1.exon5;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55367540 | 55367686 | 55367540 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55366766 | 55366903 | 55366766 | ID=MS.gene009925.t1.exon6;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55366766 | 55366903 | 55366766 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55366641 | 55366674 | 55366641 | ID=MS.gene009925.t1.exon7;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55366641 | 55366674 | 55366641 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55365968 | 55366147 | 55365968 | ID=MS.gene009925.t1.exon8;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55365968 | 55366147 | 55365968 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55363810 | 55363932 | 55363810 | ID=MS.gene009925.t1.exon9;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55363810 | 55363932 | 55363810 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
chr5.3 | exon | 55363674 | 55363741 | 55363674 | ID=MS.gene009925.t1.exon10;Parent=MS.gene009925.t1 |
chr5.3 | CDS | 55363674 | 55363741 | 55363674 | ID=cds.MS.gene009925.t1;Parent=MS.gene009925.t1 |
Gene Sequence |
Protein sequence |