Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01001.t1 | XP_003594195.1 | 98.9 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 4.00E-48 | 200.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01001.t1 | O49636 | 89.2 | 93 | 10 | 0 | 1 | 93 | 1 | 93 | 8.4e-47 | 187.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01001.t1 | Q2HVG1 | 98.9 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 2.9e-48 | 200.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76206 | MS.gene01001 | PPI |
| MS.gene01001 | MS.gene74955 | PPI |
| MS.gene029307 | MS.gene01001 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01001.t1 | MTR_2g025480 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 2.23e-65 | 192 |
| MS.gene01001.t1 | MTR_2g025470 | 73.913 | 92 | 24 | 0 | 1 | 92 | 1 | 92 | 9.80e-50 | 152 |
| MS.gene01001.t1 | MTR_2g025470 | 73.913 | 92 | 24 | 0 | 1 | 92 | 1 | 92 | 1.80e-49 | 151 |
| MS.gene01001.t1 | MTR_2g025470 | 73.913 | 69 | 18 | 0 | 1 | 69 | 1 | 69 | 3.73e-35 | 115 |
| MS.gene01001.t1 | MTR_1g112340 | 38.372 | 86 | 53 | 0 | 6 | 91 | 4 | 89 | 1.51e-17 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01001.t1 | AT4G22310 | 89.247 | 93 | 10 | 0 | 1 | 93 | 1 | 93 | 2.69e-60 | 179 |
| MS.gene01001.t1 | AT4G14695 | 82.796 | 93 | 16 | 0 | 1 | 93 | 1 | 93 | 1.52e-56 | 170 |
| MS.gene01001.t1 | AT4G14695 | 82.796 | 93 | 16 | 0 | 1 | 93 | 1 | 93 | 1.52e-56 | 170 |
| MS.gene01001.t1 | AT4G05590 | 82.796 | 93 | 16 | 0 | 1 | 93 | 1 | 93 | 1.60e-56 | 170 |
| MS.gene01001.t1 | AT4G05590 | 58.779 | 131 | 16 | 1 | 1 | 93 | 1 | 131 | 2.07e-49 | 153 |
| MS.gene01001.t1 | AT4G05590 | 88.406 | 69 | 8 | 0 | 1 | 69 | 1 | 69 | 2.33e-42 | 133 |
| MS.gene01001.t1 | AT4G14695 | 63.441 | 93 | 16 | 1 | 1 | 93 | 1 | 75 | 2.33e-37 | 121 |
| MS.gene01001.t1 | AT5G20090 | 41.758 | 91 | 53 | 0 | 1 | 91 | 1 | 91 | 5.24e-21 | 80.1 |
| MS.gene01001.t1 | AT5G20090 | 41.758 | 91 | 53 | 0 | 1 | 91 | 1 | 91 | 5.88e-21 | 80.1 |
| MS.gene01001.t1 | AT5G20090 | 41.758 | 91 | 53 | 0 | 1 | 91 | 1 | 91 | 5.88e-21 | 80.1 |
| MS.gene01001.t1 | AT5G20090 | 41.758 | 91 | 53 | 0 | 1 | 91 | 1 | 91 | 5.88e-21 | 80.1 |
Find 20 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAAGTAACTCACTGGTTT+TGG | 0.211024 | 2.3:+63415306 | None:intergenic |
| CTTCAAAGCTTCAAGCATTC+TGG | 0.222791 | 2.3:-63415345 | MS.gene01001:CDS |
| CTTTCCTATCCTCAACAAAT+AGG | 0.357519 | 2.3:-63413785 | MS.gene01001:intron |
| TTGCAACGTTCACAGCAAAA+AGG | 0.357937 | 2.3:+63412730 | None:intergenic |
| TGAGGATAGGAAAGCTTCTC+TGG | 0.382144 | 2.3:+63413794 | None:intergenic |
| ATTTGCGTGACAGTTGGTAT+AGG | 0.405723 | 2.3:+63412694 | None:intergenic |
| GACACAGCTGTTACAGCTAC+TGG | 0.418439 | 2.3:-63413552 | MS.gene01001:intron |
| TTACAGCTACTGGACTTATC+TGG | 0.420347 | 2.3:-63413542 | MS.gene01001:CDS |
| AACGTTGCAATGGCAGGAAC+TGG | 0.478710 | 2.3:-63412717 | MS.gene01001:CDS |
| CTGATACCCCACTTAAATGT+AGG | 0.491087 | 2.3:+63413848 | None:intergenic |
| TTTGGGCACCTACATTTAAG+TGG | 0.501597 | 2.3:-63413856 | MS.gene01001:CDS |
| CATACCTATTTGTTGAGGAT+AGG | 0.535886 | 2.3:+63413781 | None:intergenic |
| TTGGGCACCTACATTTAAGT+GGG | 0.548150 | 2.3:-63413855 | MS.gene01001:CDS |
| GCTGTGAACGTTGCAATGGC+AGG | 0.549298 | 2.3:-63412723 | MS.gene01001:CDS |
| ACCGCAATTTGCGTGACAGT+TGG | 0.573648 | 2.3:+63412688 | None:intergenic |
| GCATTCTGGAATCATCCAGC+TGG | 0.579572 | 2.3:-63415331 | MS.gene01001:CDS |
| ACCAACTGTCACGCAAATTG+CGG | 0.595594 | 2.3:-63412689 | None:intergenic |
| ATGCGCATACCTATTTGTTG+AGG | 0.604492 | 2.3:+63413776 | None:intergenic |
| GGATAGGAAAGCTTCTCTGG+TGG | 0.644326 | 2.3:+63413797 | None:intergenic |
| TGGGCACCTACATTTAAGTG+GGG | 0.659300 | 2.3:-63413854 | MS.gene01001:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTCAAATTAAGTTAAT+CGG | + | chr2.3:63412918-63412937 | None:intergenic | 15.0% |
| !! | AAATCATATATACAAAGTTA+TGG | - | chr2.3:63413259-63413278 | MS.gene01001:intron | 15.0% |
| !!! | TAACTTTGTATATATGATTT+TGG | - | chr2.3:63413658-63413677 | MS.gene01001:intron | 15.0% |
| !!! | TAACTTTGTATATATGATTT+TGG | + | chr2.3:63413677-63413658 | None:intergenic | 15.0% |
| !!! | TTTTTAAGGTTTTTATTTCT+TGG | + | chr2.3:63415003-63415022 | None:intergenic | 15.0% |
| !! | AAGGATTTAATTGATAAAAG+TGG | + | chr2.3:63413747-63413766 | None:intergenic | 20.0% |
| !! | ACAATTAACTAAATGAACTT+TGG | - | chr2.3:63415111-63415130 | MS.gene01001:intron | 20.0% |
| !! | ACTTATTATTATCAAAGATC+TGG | - | chr2.3:63413048-63413067 | MS.gene01001:intron | 20.0% |
| !! | AGTATATATTCTCATGTATT+GGG | - | chr2.3:63414427-63414446 | MS.gene01001:intron | 20.0% |
| !! | ATATTTCATGAACAAGTTAA+AGG | + | chr2.3:63414585-63414604 | None:intergenic | 20.0% |
| !! | ATGAAATATAGAAATACTAG+TGG | - | chr2.3:63414596-63414615 | MS.gene01001:intron | 20.0% |
| !! | CCAAATTCAATAGAAATATT+AGG | + | chr2.3:63413831-63413850 | None:intergenic | 20.0% |
| !! | GATAAAAGTGGTTAAATATA+GGG | + | chr2.3:63413735-63413754 | None:intergenic | 20.0% |
| !! | TAGTATATATTCTCATGTAT+TGG | - | chr2.3:63414426-63414445 | MS.gene01001:intron | 20.0% |
| !! | TGATAAAAGTGGTTAAATAT+AGG | + | chr2.3:63413736-63413755 | None:intergenic | 20.0% |
| !! | TTCATAAATAAAAACACGAA+TGG | + | chr2.3:63412781-63412800 | None:intergenic | 20.0% |
| !! | TTGATTGCTTTGTAAAAATT+GGG | - | chr2.3:63412936-63412955 | MS.gene01001:intron | 20.0% |
| !! | TTTGATTGCTTTGTAAAAAT+TGG | - | chr2.3:63412935-63412954 | MS.gene01001:intron | 20.0% |
| !!! | AAGTTTTGTTGTTTTTTCAA+AGG | - | chr2.3:63414552-63414571 | MS.gene01001:intron | 20.0% |
| !!! | AGAAATACACATTTTCAAAA+GGG | + | chr2.3:63414331-63414350 | None:intergenic | 20.0% |
| !!! | CCTAATATTTCTATTGAATT+TGG | - | chr2.3:63413828-63413847 | MS.gene01001:CDS | 20.0% |
| !!! | TAAAAATTGGGTCATTTTTA+GGG | - | chr2.3:63412948-63412967 | MS.gene01001:intron | 20.0% |
| ! | AAAGTAGAGGACTAATTTAT+TGG | + | chr2.3:63413159-63413178 | None:intergenic | 25.0% |
| ! | ATTCCATAATTCATTCACTT+GGG | + | chr2.3:63414379-63414398 | None:intergenic | 25.0% |
| ! | CAAATCCAATAACTGTTATA+CGG | + | chr2.3:63412833-63412852 | None:intergenic | 25.0% |
| ! | GAAAAAACAACAAAACTTAC+TGG | + | chr2.3:63414550-63414569 | None:intergenic | 25.0% |
| ! | GGAATTATAAACGAAATTGT+TGG | - | chr2.3:63413069-63413088 | MS.gene01001:intron | 25.0% |
| ! | GGTGAAAAATGTAATCTATT+TGG | + | chr2.3:63414046-63414065 | None:intergenic | 25.0% |
| ! | TAACTAAGCAACAAAAAAAC+AGG | + | chr2.3:63414877-63414896 | None:intergenic | 25.0% |
| ! | TTACTATGTTGCAGAAAAAT+TGG | - | chr2.3:63415287-63415306 | MS.gene01001:intron | 25.0% |
| !! | CAGAAATACACATTTTCAAA+AGG | + | chr2.3:63414332-63414351 | None:intergenic | 25.0% |
| !! | GTATTTCTGAATTCTTTGAA+AGG | - | chr2.3:63414343-63414362 | MS.gene01001:intron | 25.0% |
| !! | TATATACTGACTATCCAATT+AGG | - | chr2.3:63413479-63413498 | MS.gene01001:intron | 25.0% |
| !!! | GTAAAAATTGGGTCATTTTT+AGG | - | chr2.3:63412947-63412966 | MS.gene01001:intron | 25.0% |
| !!! | TCGTTGTTTTTCATTTGATA+TGG | - | chr2.3:63412802-63412821 | MS.gene01001:intron | 25.0% |
| AAATGTTGCTGTGTTAATTG+AGG | + | chr2.3:63415071-63415090 | None:intergenic | 30.0% | |
| AAATTAGTCCTCTACTTTGT+AGG | - | chr2.3:63413161-63413180 | MS.gene01001:intron | 30.0% | |
| AACTAACATGTCAAGGATTA+TGG | + | chr2.3:63415259-63415278 | None:intergenic | 30.0% | |
| ACCTTAAAAACCTTATGCTA+TGG | - | chr2.3:63415013-63415032 | MS.gene01001:intron | 30.0% | |
| ATATAAACTTCTCTCTCTAC+TGG | + | chr2.3:63413462-63413481 | None:intergenic | 30.0% | |
| ATTCTATTAAACTGCCAAGT+TGG | - | chr2.3:63413708-63413727 | MS.gene01001:intron | 30.0% | |
| CATGAAAGACAAACAAACTA+GGG | - | chr2.3:63413343-63413362 | MS.gene01001:intron | 30.0% | |
| CATTCCATAATTCATTCACT+TGG | + | chr2.3:63414380-63414399 | None:intergenic | 30.0% | |
| CGTATAACAGTTATTGGATT+TGG | - | chr2.3:63412831-63412850 | MS.gene01001:intron | 30.0% | |
| GAAAATTGAGAACTACTACA+TGG | - | chr2.3:63415170-63415189 | MS.gene01001:intron | 30.0% | |
| TAACAAGTGGGTAAAACATA+AGG | + | chr2.3:63413766-63413785 | None:intergenic | 30.0% | |
| TACTTCCGTATAACAGTTAT+TGG | - | chr2.3:63412825-63412844 | MS.gene01001:intron | 30.0% | |
| TTAAAAACCTTATGCTATGG+TGG | - | chr2.3:63415016-63415035 | MS.gene01001:intron | 30.0% | |
| TTTAGCCACAAACTTCAATT+TGG | - | chr2.3:63413803-63413822 | MS.gene01001:CDS | 30.0% | |
| TTTCAAAATGCTTCTGATGT+TGG | - | chr2.3:63413215-63413234 | MS.gene01001:intron | 30.0% | |
| ! | AATCGTATAAAGCATCAAGA+AGG | + | chr2.3:63413386-63413405 | None:intergenic | 30.0% |
| ! | ACCATAGCATAAGGTTTTTA+AGG | + | chr2.3:63415017-63415036 | None:intergenic | 30.0% |
| ! | ATCGTATAAAGCATCAAGAA+GGG | + | chr2.3:63413385-63413404 | None:intergenic | 30.0% |
| ! | CATTTTTCACCTGATTCAAA+CGG | - | chr2.3:63414055-63414074 | MS.gene01001:intron | 30.0% |
| ! | CTTTGGTTCACTTATCATAA+TGG | - | chr2.3:63415128-63415147 | MS.gene01001:intron | 30.0% |
| ! | TATTTTGTGCAGTTCACTTT+TGG | - | chr2.3:63414168-63414187 | MS.gene01001:intron | 30.0% |
| ! | TGTATATTGACTATCCCATT+AGG | + | chr2.3:63413433-63413452 | None:intergenic | 30.0% |
| ! | TTTTGATGCTTCATGAAACT+TGG | - | chr2.3:63413025-63413044 | MS.gene01001:intron | 30.0% |
| ! | TTTTGCAAAATCAGCAACAT+TGG | + | chr2.3:63414225-63414244 | None:intergenic | 30.0% |
| !! | ATTTTGTGCAGTTCACTTTT+GGG | - | chr2.3:63414169-63414188 | MS.gene01001:intron | 30.0% |
| !!! | TTTCCTACTCTTATTTTCTC+CGG | + | chr2.3:63415154-63415173 | None:intergenic | 30.0% |
| AAAGACAAACAAACTAGGGT+TGG | - | chr2.3:63413347-63413366 | MS.gene01001:intron | 35.0% | |
| AAGACAAACAAACTAGGGTT+GGG | - | chr2.3:63413348-63413367 | MS.gene01001:intron | 35.0% | |
| AAGTGTGTATGAGTGTATTC+TGG | - | chr2.3:63413407-63413426 | MS.gene01001:intron | 35.0% | |
| AATGATCCATCTATCAGACA+AGG | - | chr2.3:63413605-63413624 | MS.gene01001:intron | 35.0% | |
| ACAGCTGTGTCAAAAAGAAA+AGG | + | chr2.3:63414481-63414500 | None:intergenic | 35.0% | |
| AGACCAAATTGCTAACAAGT+GGG | + | chr2.3:63413778-63413797 | None:intergenic | 35.0% | |
| AGGAACCAAATTGAAGTTTG+TGG | + | chr2.3:63413811-63413830 | None:intergenic | 35.0% | |
| AGTGAACTGCACAAAATAAG+TGG | + | chr2.3:63414166-63414185 | None:intergenic | 35.0% | |
| ATGCCCAAGTGAATGAATTA+TGG | - | chr2.3:63414373-63414392 | MS.gene01001:intron | 35.0% | |
| ATGTGATGTGTGCATAATTC+AGG | - | chr2.3:63414731-63414750 | MS.gene01001:intron | 35.0% | |
| CACATCACATATAGTGATGA+AGG | + | chr2.3:63414721-63414740 | None:intergenic | 35.0% | |
| CAGTTATTGGATTTGGATGT+CGG | - | chr2.3:63412838-63412857 | MS.gene01001:intron | 35.0% | |
| CCATGAAAGACAAACAAACT+AGG | - | chr2.3:63413342-63413361 | MS.gene01001:intron | 35.0% | |
| CTTTCCTATCCTCAACAAAT+AGG | - | chr2.3:63414257-63414276 | MS.gene01001:intron | 35.0% | |
| GAAAATTCGAAGTAACTCAC+TGG | + | chr2.3:63412745-63412764 | None:intergenic | 35.0% | |
| GTTAAATATAGGGACCAACT+TGG | + | chr2.3:63413725-63413744 | None:intergenic | 35.0% | |
| TAATCTCGAGAACCTATTTG+AGG | - | chr2.3:63413916-63413935 | MS.gene01001:intron | 35.0% | |
| TAGTTGCAACTAACATGTCA+AGG | + | chr2.3:63415266-63415285 | None:intergenic | 35.0% | |
| TATATACTGAGAGAGCTGAT+TGG | + | chr2.3:63414970-63414989 | None:intergenic | 35.0% | |
| TCAACACTTGACAACAACAT+TGG | + | chr2.3:63414105-63414124 | None:intergenic | 35.0% | |
| TCTGATAGATGGATCATTCA+GGG | + | chr2.3:63413603-63413622 | None:intergenic | 35.0% | |
| TGAGTGTATTCTGACCTAAT+TGG | + | chr2.3:63413496-63413515 | None:intergenic | 35.0% | |
| TTTAACACCACCATAGCATA+AGG | + | chr2.3:63415026-63415045 | None:intergenic | 35.0% | |
| ! | CATACCTATTTGTTGAGGAT+AGG | + | chr2.3:63414264-63414283 | None:intergenic | 35.0% |
| ! | TTACCCACTTGTTAGCAATT+TGG | - | chr2.3:63413772-63413791 | MS.gene01001:intron | 35.0% |
| !! | CCTAGTTTGTTTGTCTTTCA+TGG | + | chr2.3:63413345-63413364 | None:intergenic | 35.0% |
| AAACATGTACCTTGTATGCG+AGG | - | chr2.3:63413296-63413315 | MS.gene01001:intron | 40.0% | |
| AAATTCATCCCTAACTCTGC+AGG | + | chr2.3:63413946-63413965 | None:intergenic | 40.0% | |
| AAGAGACAACCGTTTGAATC+AGG | + | chr2.3:63414067-63414086 | None:intergenic | 40.0% | |
| AGAGTTAGGGATGAATTTGG+TGG | - | chr2.3:63413948-63413967 | MS.gene01001:intron | 40.0% | |
| AGATCACGCAAACAACAGTA+GGG | + | chr2.3:63414931-63414950 | None:intergenic | 40.0% | |
| AGTGGTCTGAAGATCATTTG+TGG | - | chr2.3:63414614-63414633 | MS.gene01001:intron | 40.0% | |
| ATGAGTGTATTCTGGCCTAA+TGG | - | chr2.3:63413415-63413434 | MS.gene01001:intron | 40.0% | |
| CTGATACCCCACTTAAATGT+AGG | + | chr2.3:63414197-63414216 | None:intergenic | 40.0% | |
| CTTCAAAGCTTCAAGCATTC+TGG | - | chr2.3:63412697-63412716 | MS.gene01001:CDS | 40.0% | |
| GAATTTGGATCCTGACTCTA+AGG | - | chr2.3:63413843-63413862 | MS.gene01001:CDS | 40.0% | |
| GAGACCAAATTGCTAACAAG+TGG | + | chr2.3:63413779-63413798 | None:intergenic | 40.0% | |
| GAGTCAAATTTGACAGAGAC+TGG | - | chr2.3:63413874-63413893 | MS.gene01001:intron | 40.0% | |
| GGTTCACTTATCATAATGGC+CGG | - | chr2.3:63415132-63415151 | MS.gene01001:intron | 40.0% | |
| GTCTGATAGATGGATCATTC+AGG | + | chr2.3:63413604-63413623 | None:intergenic | 40.0% | |
| GTGTGAAGTAGCATAATGTG+AGG | - | chr2.3:63413101-63413120 | MS.gene01001:intron | 40.0% | |
| TATTACGCTTTGCTAGCACA+AGG | + | chr2.3:63414682-63414701 | None:intergenic | 40.0% | |
| TCATACTAGTCCTTAGAGTC+AGG | + | chr2.3:63413856-63413875 | None:intergenic | 40.0% | |
| TGAGTGTATTCTGGCCTAAT+GGG | - | chr2.3:63413416-63413435 | MS.gene01001:intron | 40.0% | |
| TGCAGAGTTAGGGATGAATT+TGG | - | chr2.3:63413945-63413964 | MS.gene01001:intron | 40.0% | |
| TGTGTACCTTGTCTGATAGA+TGG | + | chr2.3:63413614-63413633 | None:intergenic | 40.0% | |
| TTACAGCTACTGGACTTATC+TGG | - | chr2.3:63414500-63414519 | MS.gene01001:intron | 40.0% | |
| TTGCAACGTTCACAGCAAAA+AGG | + | chr2.3:63415315-63415334 | None:intergenic | 40.0% | |
| TTGGGCACCTACATTTAAGT+GGG | - | chr2.3:63414187-63414206 | MS.gene01001:intron | 40.0% | |
| TTTGGGCACCTACATTTAAG+TGG | - | chr2.3:63414186-63414205 | MS.gene01001:intron | 40.0% | |
| ! | ATGCGCATACCTATTTGTTG+AGG | + | chr2.3:63414269-63414288 | None:intergenic | 40.0% |
| ! | ATTTGCGTGACAGTTGGTAT+AGG | + | chr2.3:63415351-63415370 | None:intergenic | 40.0% |
| ! | CTGAATTCTTTGAAAGGAGC+AGG | - | chr2.3:63414349-63414368 | MS.gene01001:intron | 40.0% |
| ! | TCAACCTAGTTTGTCTCTCA+TGG | - | chr2.3:63413554-63413573 | MS.gene01001:intron | 40.0% |
| ! | TTGACAACAACATTGGTGAC+TGG | + | chr2.3:63414098-63414117 | None:intergenic | 40.0% |
| !! | TTTTGCTGTGAACGTTGCAA+TGG | - | chr2.3:63415315-63415334 | MS.gene01001:intron | 40.0% |
| !!! | CGAAGTAACTCACTGGTTTT+GGG | + | chr2.3:63412738-63412757 | None:intergenic | 40.0% |
| !!! | TCGAAGTAACTCACTGGTTT+TGG | + | chr2.3:63412739-63412758 | None:intergenic | 40.0% |
| CACACACTTTGATCGTACAG+AGG | - | chr2.3:63413514-63413533 | MS.gene01001:intron | 45.0% | |
| CAGATCACGCAAACAACAGT+AGG | + | chr2.3:63414932-63414951 | None:intergenic | 45.0% | |
| CGATTGAGCTATCATGAGAG+AGG | - | chr2.3:63413319-63413338 | MS.gene01001:intron | 45.0% | |
| GAAGCCATGAGAGACAAACT+AGG | + | chr2.3:63413561-63413580 | None:intergenic | 45.0% | |
| TCTGCAGGACATCCTCAAAT+AGG | + | chr2.3:63413931-63413950 | None:intergenic | 45.0% | |
| TGAGGATAGGAAAGCTTCTC+TGG | + | chr2.3:63414251-63414270 | None:intergenic | 45.0% | |
| TGGCCGGAGAAAATAAGAGT+AGG | - | chr2.3:63415148-63415167 | MS.gene01001:intron | 45.0% | |
| TGGGCACCTACATTTAAGTG+GGG | - | chr2.3:63414188-63414207 | MS.gene01001:intron | 45.0% | |
| TTACGCTTTGCTTGCACTGA+AGG | + | chr2.3:63414641-63414660 | None:intergenic | 45.0% | |
| !! | GAGAGTGTCCTACAAAGTAG+AGG | + | chr2.3:63413172-63413191 | None:intergenic | 45.0% |
| AACGTTGCAATGGCAGGAAC+TGG | - | chr2.3:63415325-63415344 | MS.gene01001:CDS | 50.0% | |
| GACACAGCTGTTACAGCTAC+TGG | - | chr2.3:63414490-63414509 | MS.gene01001:intron | 50.0% | |
| GAGGATGTCCTGCAGAGTTA+GGG | - | chr2.3:63413935-63413954 | MS.gene01001:intron | 50.0% | |
| GGATAGGAAAGCTTCTCTGG+TGG | + | chr2.3:63414248-63414267 | None:intergenic | 50.0% | |
| TGAGGATGTCCTGCAGAGTT+AGG | - | chr2.3:63413934-63413953 | MS.gene01001:intron | 50.0% | |
| !! | GCATTCTGGAATCATCCAGC+TGG | - | chr2.3:63412711-63412730 | MS.gene01001:CDS | 50.0% |
| GCTCAATCGCCTCGCATACA+AGG | + | chr2.3:63413308-63413327 | None:intergenic | 55.0% | |
| GCTGTGAACGTTGCAATGGC+AGG | - | chr2.3:63415319-63415338 | MS.gene01001:intron | 55.0% | |
| !!! | TCACTGGTTTTGGGACCAGC+TGG | + | chr2.3:63412729-63412748 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 63412690 | 63415374 | 63412690 | ID=MS.gene01001 |
| chr2.3 | mRNA | 63412690 | 63415374 | 63412690 | ID=MS.gene01001.t1;Parent=MS.gene01001 |
| chr2.3 | exon | 63415320 | 63415374 | 63415320 | ID=MS.gene01001.t1.exon1;Parent=MS.gene01001.t1 |
| chr2.3 | CDS | 63415320 | 63415374 | 63415320 | ID=cds.MS.gene01001.t1;Parent=MS.gene01001.t1 |
| chr2.3 | exon | 63413786 | 63413884 | 63413786 | ID=MS.gene01001.t1.exon2;Parent=MS.gene01001.t1 |
| chr2.3 | CDS | 63413786 | 63413884 | 63413786 | ID=cds.MS.gene01001.t1;Parent=MS.gene01001.t1 |
| chr2.3 | exon | 63413515 | 63413567 | 63413515 | ID=MS.gene01001.t1.exon3;Parent=MS.gene01001.t1 |
| chr2.3 | CDS | 63413515 | 63413567 | 63413515 | ID=cds.MS.gene01001.t1;Parent=MS.gene01001.t1 |
| chr2.3 | exon | 63412690 | 63412763 | 63412690 | ID=MS.gene01001.t1.exon4;Parent=MS.gene01001.t1 |
| chr2.3 | CDS | 63412690 | 63412763 | 63412690 | ID=cds.MS.gene01001.t1;Parent=MS.gene01001.t1 |
| Gene Sequence |
| Protein sequence |