Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010172.t1 | XP_003615175.1 | 94.7 | 469 | 23 | 1 | 1 | 469 | 1 | 467 | 1.20E-249 | 872.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010172.t1 | Q9LHN7 | 74.1 | 436 | 111 | 1 | 30 | 465 | 33 | 466 | 1.1e-187 | 657.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010172.t1 | G7KAH9 | 94.7 | 469 | 23 | 1 | 1 | 469 | 1 | 467 | 8.5e-250 | 872.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010172 | MS.gene56252 | PPI |
| MS.gene84379 | MS.gene010172 | PPI |
| MS.gene010172 | MS.gene51623 | PPI |
| MS.gene010172 | MS.gene009450 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010172.t1 | MTR_5g064750 | 97.655 | 469 | 9 | 2 | 1 | 469 | 1 | 467 | 0.0 | 903 |
| MS.gene010172.t1 | MTR_8g085630 | 63.801 | 442 | 160 | 0 | 19 | 460 | 32 | 473 | 0.0 | 587 |
| MS.gene010172.t1 | MTR_1g112950 | 47.817 | 458 | 236 | 2 | 5 | 462 | 4 | 458 | 4.38e-147 | 428 |
| MS.gene010172.t1 | MTR_5g026780 | 46.847 | 444 | 234 | 2 | 19 | 462 | 22 | 463 | 5.75e-137 | 403 |
| MS.gene010172.t1 | MTR_5g026780 | 46.847 | 444 | 234 | 2 | 19 | 462 | 38 | 479 | 6.59e-137 | 403 |
| MS.gene010172.t1 | MTR_0031s0060 | 44.912 | 452 | 216 | 4 | 11 | 462 | 130 | 548 | 1.73e-130 | 392 |
| MS.gene010172.t1 | MTR_5g005160 | 43.973 | 448 | 247 | 3 | 18 | 464 | 1 | 445 | 7.02e-124 | 370 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010172.t1 | AT3G13620 | 73.026 | 456 | 121 | 1 | 13 | 468 | 16 | 469 | 0.0 | 683 |
| MS.gene010172.t1 | AT1G31830 | 48.214 | 448 | 223 | 5 | 19 | 462 | 23 | 465 | 5.81e-143 | 418 |
| MS.gene010172.t1 | AT1G31830 | 48.214 | 448 | 223 | 5 | 19 | 462 | 39 | 481 | 9.68e-143 | 418 |
| MS.gene010172.t1 | AT3G19553 | 47.390 | 479 | 229 | 6 | 1 | 464 | 1 | 471 | 1.19e-142 | 417 |
| MS.gene010172.t1 | AT5G05630 | 45.295 | 457 | 247 | 2 | 5 | 459 | 29 | 484 | 1.56e-138 | 407 |
| MS.gene010172.t1 | AT1G31820 | 47.619 | 441 | 224 | 4 | 21 | 459 | 30 | 465 | 1.41e-132 | 392 |
Find 92 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGCACTACTACTTAAT+TGG | 0.091375 | 5.2:+54763237 | None:intergenic |
| CTGGAAAATGGTTGAAAATT+TGG | 0.098359 | 5.2:-54763304 | MS.gene010172:CDS |
| TACACCTTGGTTGGGTATTT+TGG | 0.112839 | 5.2:-54763147 | MS.gene010172:CDS |
| AACAATTGCTGTTTCTTATA+TGG | 0.175964 | 5.2:-54763111 | MS.gene010172:CDS |
| CCCATTAATGAGCCTGAAAA+TGG | 0.184241 | 5.2:+54763857 | None:intergenic |
| CATTTATGTGGATTTATCTT+AGG | 0.215603 | 5.2:+54763593 | None:intergenic |
| TCCTCATCTTTCCTTTCATT+TGG | 0.233880 | 5.2:-54763970 | MS.gene010172:CDS |
| GTATAGTTTGGGTATGATAT+TGG | 0.268899 | 5.2:-54763054 | MS.gene010172:CDS |
| CTAAGATAAATCCACATAAA+TGG | 0.281292 | 5.2:-54763592 | MS.gene010172:CDS |
| CTGAGATTATTGCTGGAAAA+TGG | 0.284737 | 5.2:-54763316 | MS.gene010172:CDS |
| TAGTAGTGCTTATCAAGTTT+TGG | 0.284965 | 5.2:-54763228 | MS.gene010172:CDS |
| TTGAAAATTTGGGTTGAAAT+TGG | 0.294482 | 5.2:-54763293 | MS.gene010172:CDS |
| TGAGGAATATGAGAGGGATT+AGG | 0.299565 | 5.2:+54764074 | None:intergenic |
| TCAGCAGTTATAAGAGCTTC+TGG | 0.304684 | 5.2:+54763941 | None:intergenic |
| AAATTCATTGGAATCTTATA+AGG | 0.308786 | 5.2:+54762981 | None:intergenic |
| GAGGAATATGAGAGGGATTA+GGG | 0.310047 | 5.2:+54764075 | None:intergenic |
| CCACATAAATGGATTAGTTT+AGG | 0.314833 | 5.2:-54763581 | MS.gene010172:CDS |
| GGGGCCGGCGGCTTGAACGG+CGG | 0.318168 | 5.2:+54764012 | None:intergenic |
| TGGAAAATGGTTGAAAATTT+GGG | 0.326002 | 5.2:-54763303 | MS.gene010172:CDS |
| ATGGATTAGTTTAGGTCAAA+AGG | 0.342823 | 5.2:-54763573 | MS.gene010172:CDS |
| TTTGGGAATGGTGGTGGTGG+TGG | 0.349220 | 5.2:+54764120 | None:intergenic |
| AATCAAAGTGAATGGGAAAC+TGG | 0.353220 | 5.2:-54763356 | MS.gene010172:CDS |
| TATGTTGGTGGTTATGTGTT+TGG | 0.364525 | 5.2:-54762955 | MS.gene010172:CDS |
| TGACCTAACTCCACAAAACT+TGG | 0.364535 | 5.2:+54763181 | None:intergenic |
| ATAACAAAACCACCGTTTCC+TGG | 0.365386 | 5.2:+54763902 | None:intergenic |
| AATTGTGTAGGATGAAGAAT+TGG | 0.368991 | 5.2:-54762827 | MS.gene010172:CDS |
| TATACTGGTTTAACAATTGT+TGG | 0.372888 | 5.2:-54763683 | MS.gene010172:CDS |
| GGGCCGGCGGCTTGAACGGC+GGG | 0.382006 | 5.2:+54764013 | None:intergenic |
| ATAAGCACTACTACTTAATT+GGG | 0.402363 | 5.2:+54763238 | None:intergenic |
| GATTAGGGTTAGTTTCTTTG+TGG | 0.402905 | 5.2:+54764090 | None:intergenic |
| TTTGTGGAGTTAGGTCAAAA+TGG | 0.405715 | 5.2:-54763175 | MS.gene010172:CDS |
| AAAAGGGTGTTAAGAAAGAT+TGG | 0.406094 | 5.2:-54763556 | MS.gene010172:CDS |
| CAAGCTGCTGAGATTATTGC+TGG | 0.414273 | 5.2:-54763323 | MS.gene010172:CDS |
| GTGAGTGGTTTGATGACTAT+AGG | 0.417199 | 5.2:-54762876 | MS.gene010172:CDS |
| ATATAATCGATGCAGAGAAC+AGG | 0.424951 | 5.2:+54763791 | None:intergenic |
| ACCACCGTTTCCTGGATAAA+CGG | 0.427767 | 5.2:+54763910 | None:intergenic |
| TGGATTAGTTTAGGTCAAAA+GGG | 0.430138 | 5.2:-54763572 | MS.gene010172:CDS |
| CAGGCTCATTAATGGGTACA+TGG | 0.430455 | 5.2:-54763850 | MS.gene010172:CDS |
| GATAATGTTAGTACTTTAGC+TGG | 0.431843 | 5.2:-54763491 | MS.gene010172:CDS |
| ATTAAAGAGGATGAAGAAGA+TGG | 0.432819 | 5.2:-54762792 | MS.gene010172:CDS |
| GGTGGTGGTGGTTGGAGCGG+TGG | 0.435676 | 5.2:+54764138 | None:intergenic |
| ACGGCGGGTTCTTCGCCGTA+TGG | 0.438043 | 5.2:+54764028 | None:intergenic |
| TAGGGTTAGTTTCTTTGTGG+TGG | 0.446224 | 5.2:+54764093 | None:intergenic |
| ATGGTTTAATACACCTTGGT+TGG | 0.448767 | 5.2:-54763156 | MS.gene010172:CDS |
| TGGTTTAATACACCTTGGTT+GGG | 0.457261 | 5.2:-54763155 | MS.gene010172:CDS |
| CGGCGGGTTCTTCGCCGTAT+GGG | 0.457464 | 5.2:+54764029 | None:intergenic |
| TTGATGACTATAGGTGGGAT+TGG | 0.471912 | 5.2:-54762867 | MS.gene010172:CDS |
| GTTATGTGTTTGGTACCATC+TGG | 0.478184 | 5.2:-54762945 | MS.gene010172:CDS |
| CCTAAACTAATCCATTTATG+TGG | 0.478543 | 5.2:+54763581 | None:intergenic |
| TTCTTCGCCGTATGGGCCGC+CGG | 0.479835 | 5.2:+54764036 | None:intergenic |
| GAATTAACCACCGTTTATCC+AGG | 0.481954 | 5.2:-54763920 | MS.gene010172:CDS |
| ACCAACATAGGCAAATTCAT+TGG | 0.482718 | 5.2:+54762969 | None:intergenic |
| TGGTGGTTGGAGCGGTGGAA+AGG | 0.490716 | 5.2:+54764143 | None:intergenic |
| TCCAATGAATTTGCCTATGT+TGG | 0.491241 | 5.2:-54762970 | MS.gene010172:CDS |
| TGAATGTGAATCAAAGTGAA+TGG | 0.492330 | 5.2:-54763364 | MS.gene010172:CDS |
| GAAGCCGAGAAGTGCAAAGA+GGG | 0.499008 | 5.2:+54763991 | None:intergenic |
| ATAAGAGACATCAAAACAAA+TGG | 0.501930 | 5.2:+54763623 | None:intergenic |
| GGTGAAGTTTGAGATTAAAG+AGG | 0.504848 | 5.2:-54762805 | MS.gene010172:CDS |
| GAAGTAGCCGGCGGCCCATA+CGG | 0.505411 | 5.2:-54764043 | MS.gene010172:CDS |
| AATGAATTTGCCTATGTTGG+TGG | 0.506075 | 5.2:-54762967 | MS.gene010172:CDS |
| TGAAGAAGATGGGAATATAG+TGG | 0.508863 | 5.2:-54762781 | MS.gene010172:CDS |
| CCATTAATGAGCCTGAAAAT+GGG | 0.509829 | 5.2:+54763858 | None:intergenic |
| GACCTAACTCCACAAAACTT+GGG | 0.514816 | 5.2:+54763182 | None:intergenic |
| CAAAATGGTTTAATACACCT+TGG | 0.521677 | 5.2:-54763160 | MS.gene010172:CDS |
| TTAAAGAGGATGAAGAAGAT+GGG | 0.529578 | 5.2:-54762791 | MS.gene010172:CDS |
| TTATAAGGTCTCACTAACAT+TGG | 0.534080 | 5.2:+54762996 | None:intergenic |
| GAACCCGCCGTTCAAGCCGC+CGG | 0.542038 | 5.2:-54764016 | MS.gene010172:CDS |
| ATCAAAGTGAATGGGAAACT+GGG | 0.545968 | 5.2:-54763355 | MS.gene010172:CDS |
| AAACACATAACCACCAACAT+AGG | 0.547181 | 5.2:+54762957 | None:intergenic |
| ACCACCGTTTATCCAGGAAA+CGG | 0.548188 | 5.2:-54763914 | MS.gene010172:CDS |
| GGTACATGGAAATTCCTTAG+TGG | 0.551806 | 5.2:-54763836 | MS.gene010172:CDS |
| TCTGGAATGCTCCAAATGAA+AGG | 0.553107 | 5.2:+54763959 | None:intergenic |
| GAATGTGAATCAAAGTGAAT+GGG | 0.554110 | 5.2:-54763363 | MS.gene010172:CDS |
| CTATATTAATGACACCACTA+AGG | 0.563126 | 5.2:+54763822 | None:intergenic |
| AGCCGAGAAGTGCAAAGAGG+GGG | 0.568985 | 5.2:+54763993 | None:intergenic |
| ATTGTGTAGGATGAAGAATT+GGG | 0.588960 | 5.2:-54762826 | MS.gene010172:CDS |
| GTGGTTTGATGACTATAGGT+GGG | 0.590461 | 5.2:-54762872 | MS.gene010172:CDS |
| ACAGCAATTAAAAGAGCCAA+AGG | 0.600069 | 5.2:+54763440 | None:intergenic |
| AAGCCGAGAAGTGCAAAGAG+GGG | 0.604467 | 5.2:+54763992 | None:intergenic |
| AAATAGATGAGGAATATGAG+AGG | 0.613347 | 5.2:+54764067 | None:intergenic |
| AATAGATGAGGAATATGAGA+GGG | 0.616828 | 5.2:+54764068 | None:intergenic |
| GGAAGCCGAGAAGTGCAAAG+AGG | 0.617059 | 5.2:+54763990 | None:intergenic |
| TATAATCGATGCAGAGAACA+GGG | 0.617544 | 5.2:+54763792 | None:intergenic |
| AGTGGTTTGATGACTATAGG+TGG | 0.620077 | 5.2:-54762873 | MS.gene010172:CDS |
| CGGCTACTTCAAAATAGATG+AGG | 0.639131 | 5.2:+54764056 | None:intergenic |
| TCCAAATGAAAGGAAAGATG+AGG | 0.647512 | 5.2:+54763969 | None:intergenic |
| ACCGTTTCCTGGATAAACGG+TGG | 0.655312 | 5.2:+54763913 | None:intergenic |
| ATGAATACAAGAAAACCAGA+TGG | 0.659413 | 5.2:+54762930 | None:intergenic |
| ACCGTTTATCCAGGAAACGG+TGG | 0.661303 | 5.2:-54763911 | MS.gene010172:CDS |
| AAAATTCAAGTTCCAAAACA+GGG | 0.673667 | 5.2:+54763517 | None:intergenic |
| AAGAGAATTGCTATGTAACG+AGG | 0.693948 | 5.2:+54763734 | None:intergenic |
| GATACCAAAATACCCAACCA+AGG | 0.695981 | 5.2:+54763143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTTTATAAAATTGTGT+AGG | - | chr5.2:54764088-54764107 | MS.gene010172:CDS | 15.0% |
| !! | AAATTCATTGGAATCTTATA+AGG | + | chr5.2:54763949-54763968 | None:intergenic | 20.0% |
| !!! | AGCTAATTTTTTGTATAGTT+TGG | - | chr5.2:54763861-54763880 | MS.gene010172:CDS | 20.0% |
| !!! | GCTAATTTTTTGTATAGTTT+GGG | - | chr5.2:54763862-54763881 | MS.gene010172:CDS | 20.0% |
| !!! | TTGTCTTTTCTTAATTATAC+TGG | - | chr5.2:54763229-54763248 | MS.gene010172:CDS | 20.0% |
| ! | ATAAGAGACATCAAAACAAA+TGG | + | chr5.2:54763307-54763326 | None:intergenic | 25.0% |
| ! | ATAAGCACTACTACTTAATT+GGG | + | chr5.2:54763692-54763711 | None:intergenic | 25.0% |
| ! | CATTTATGTGGATTTATCTT+AGG | + | chr5.2:54763337-54763356 | None:intergenic | 25.0% |
| ! | CTAAGATAAATCCACATAAA+TGG | - | chr5.2:54763335-54763354 | MS.gene010172:CDS | 25.0% |
| ! | TGGAAAATGGTTGAAAATTT+GGG | - | chr5.2:54763624-54763643 | MS.gene010172:CDS | 25.0% |
| !! | AAAAATTCAAGTTCCAAAAC+AGG | + | chr5.2:54763414-54763433 | None:intergenic | 25.0% |
| !! | AAAATTCAAGTTCCAAAACA+GGG | + | chr5.2:54763413-54763432 | None:intergenic | 25.0% |
| !! | TGGTTTTCTTGTATTCATAA+TGG | - | chr5.2:54764002-54764021 | MS.gene010172:CDS | 25.0% |
| !!! | AACAATTGCTGTTTCTTATA+TGG | - | chr5.2:54763816-54763835 | MS.gene010172:CDS | 25.0% |
| !!! | GTTTTGGAACTTGAATTTTT+GGG | - | chr5.2:54763414-54763433 | MS.gene010172:CDS | 25.0% |
| !!! | TATACTGGTTTAACAATTGT+TGG | - | chr5.2:54763244-54763263 | MS.gene010172:CDS | 25.0% |
| !!! | TGTTTTGGAACTTGAATTTT+TGG | - | chr5.2:54763413-54763432 | MS.gene010172:CDS | 25.0% |
| !!! | TTGAAAATTTGGGTTGAAAT+TGG | - | chr5.2:54763634-54763653 | MS.gene010172:CDS | 25.0% |
| AAATAGATGAGGAATATGAG+AGG | + | chr5.2:54762863-54762882 | None:intergenic | 30.0% | |
| AATAGATGAGGAATATGAGA+GGG | + | chr5.2:54762862-54762881 | None:intergenic | 30.0% | |
| AATTGTGTAGGATGAAGAAT+TGG | - | chr5.2:54764100-54764119 | MS.gene010172:CDS | 30.0% | |
| ATGAATACAAGAAAACCAGA+TGG | + | chr5.2:54764000-54764019 | None:intergenic | 30.0% | |
| ATTAAAGAGGATGAAGAAGA+TGG | - | chr5.2:54764135-54764154 | MS.gene010172:CDS | 30.0% | |
| ATTGTGTAGGATGAAGAATT+GGG | - | chr5.2:54764101-54764120 | MS.gene010172:CDS | 30.0% | |
| CAAAATGGTTTAATACACCT+TGG | - | chr5.2:54763767-54763786 | MS.gene010172:CDS | 30.0% | |
| CCTAAACTAATCCATTTATG+TGG | + | chr5.2:54763349-54763368 | None:intergenic | 30.0% | |
| CTATATTAATGACACCACTA+AGG | + | chr5.2:54763108-54763127 | None:intergenic | 30.0% | |
| CTGGAAAATGGTTGAAAATT+TGG | - | chr5.2:54763623-54763642 | MS.gene010172:CDS | 30.0% | |
| GAATGTGAATCAAAGTGAAT+GGG | - | chr5.2:54763564-54763583 | MS.gene010172:CDS | 30.0% | |
| GATAAGCACTACTACTTAAT+TGG | + | chr5.2:54763693-54763712 | None:intergenic | 30.0% | |
| GATAATGTTAGTACTTTAGC+TGG | - | chr5.2:54763436-54763455 | MS.gene010172:CDS | 30.0% | |
| GTATAGTTTGGGTATGATAT+TGG | - | chr5.2:54763873-54763892 | MS.gene010172:CDS | 30.0% | |
| TGAATGTGAATCAAAGTGAA+TGG | - | chr5.2:54763563-54763582 | MS.gene010172:CDS | 30.0% | |
| TTAAAGAGGATGAAGAAGAT+GGG | - | chr5.2:54764136-54764155 | MS.gene010172:CDS | 30.0% | |
| TTATAAGGTCTCACTAACAT+TGG | + | chr5.2:54763934-54763953 | None:intergenic | 30.0% | |
| ! | ACCAAAGAAAACTTTTCCTT+TGG | - | chr5.2:54763471-54763490 | MS.gene010172:CDS | 30.0% |
| ! | AGTAGTGCTTATCAAGTTTT+GGG | - | chr5.2:54763700-54763719 | MS.gene010172:CDS | 30.0% |
| ! | TAGTAGTGCTTATCAAGTTT+TGG | - | chr5.2:54763699-54763718 | MS.gene010172:CDS | 30.0% |
| ! | TTTTCTTCAATACCCTGTTT+TGG | - | chr5.2:54763398-54763417 | MS.gene010172:CDS | 30.0% |
| !! | AAAAGGGTGTTAAGAAAGAT+TGG | - | chr5.2:54763371-54763390 | MS.gene010172:CDS | 30.0% |
| !! | ATGGATTAGTTTAGGTCAAA+AGG | - | chr5.2:54763354-54763373 | MS.gene010172:CDS | 30.0% |
| !! | CCACATAAATGGATTAGTTT+AGG | - | chr5.2:54763346-54763365 | MS.gene010172:CDS | 30.0% |
| !! | TGGAATTTGCTTCTTTTCTT+TGG | - | chr5.2:54763893-54763912 | MS.gene010172:CDS | 30.0% |
| !! | TGGATTAGTTTAGGTCAAAA+GGG | - | chr5.2:54763355-54763374 | MS.gene010172:CDS | 30.0% |
| !!! | TTCTTTGTGGTGGATTTTTT+GGG | + | chr5.2:54762827-54762846 | None:intergenic | 30.0% |
| !!! | TTTCTTTGTGGTGGATTTTT+TGG | + | chr5.2:54762828-54762847 | None:intergenic | 30.0% |
| AAACACATAACCACCAACAT+AGG | + | chr5.2:54763973-54763992 | None:intergenic | 35.0% | |
| AAGAGAATTGCTATGTAACG+AGG | + | chr5.2:54763196-54763215 | None:intergenic | 35.0% | |
| AATCAAAGTGAATGGGAAAC+TGG | - | chr5.2:54763571-54763590 | MS.gene010172:CDS | 35.0% | |
| AATGAATTTGCCTATGTTGG+TGG | - | chr5.2:54763960-54763979 | MS.gene010172:CDS | 35.0% | |
| ACAGCAATTAAAAGAGCCAA+AGG | + | chr5.2:54763490-54763509 | None:intergenic | 35.0% | |
| ACCAACATAGGCAAATTCAT+TGG | + | chr5.2:54763961-54763980 | None:intergenic | 35.0% | |
| ATATAATCGATGCAGAGAAC+AGG | + | chr5.2:54763139-54763158 | None:intergenic | 35.0% | |
| ATCAAAGTGAATGGGAAACT+GGG | - | chr5.2:54763572-54763591 | MS.gene010172:CDS | 35.0% | |
| ATGGTTTAATACACCTTGGT+TGG | - | chr5.2:54763771-54763790 | MS.gene010172:CDS | 35.0% | |
| CCATTAATGAGCCTGAAAAT+GGG | + | chr5.2:54763072-54763091 | None:intergenic | 35.0% | |
| CTGAGATTATTGCTGGAAAA+TGG | - | chr5.2:54763611-54763630 | MS.gene010172:CDS | 35.0% | |
| TATAATCGATGCAGAGAACA+GGG | + | chr5.2:54763138-54763157 | None:intergenic | 35.0% | |
| TCCAAATGAAAGGAAAGATG+AGG | + | chr5.2:54762961-54762980 | None:intergenic | 35.0% | |
| TCCAATGAATTTGCCTATGT+TGG | - | chr5.2:54763957-54763976 | MS.gene010172:CDS | 35.0% | |
| TCCTCATCTTTCCTTTCATT+TGG | - | chr5.2:54762957-54762976 | MS.gene010172:CDS | 35.0% | |
| TGAAGAAGATGGGAATATAG+TGG | - | chr5.2:54764146-54764165 | MS.gene010172:CDS | 35.0% | |
| TGGTTTAATACACCTTGGTT+GGG | - | chr5.2:54763772-54763791 | MS.gene010172:CDS | 35.0% | |
| TTTGTGGAGTTAGGTCAAAA+TGG | - | chr5.2:54763752-54763771 | MS.gene010172:CDS | 35.0% | |
| ! | CTTCTTTTCTTTGGTTGAGA+TGG | - | chr5.2:54763902-54763921 | MS.gene010172:CDS | 35.0% |
| ! | GCCAAAGGAAAAGTTTTCTT+TGG | + | chr5.2:54763475-54763494 | None:intergenic | 35.0% |
| ! | GGTGAAGTTTGAGATTAAAG+AGG | - | chr5.2:54764122-54764141 | MS.gene010172:CDS | 35.0% |
| ! | TGCTACTAAGACTGTCTTTT+TGG | - | chr5.2:54764029-54764048 | MS.gene010172:CDS | 35.0% |
| !! | CCATTTTCAGGCTCATTAAT+GGG | - | chr5.2:54763070-54763089 | MS.gene010172:CDS | 35.0% |
| !! | GATTAGGGTTAGTTTCTTTG+TGG | + | chr5.2:54762840-54762859 | None:intergenic | 35.0% |
| !! | TATGTTGGTGGTTATGTGTT+TGG | - | chr5.2:54763972-54763991 | MS.gene010172:CDS | 35.0% |
| !!! | AAACGGTGGTTTTGTTATCT+GGG | - | chr5.2:54763030-54763049 | MS.gene010172:CDS | 35.0% |
| !!! | ATTCCACTTTTTGCTGTTAC+TGG | - | chr5.2:54763535-54763554 | MS.gene010172:CDS | 35.0% |
| !!! | CTCATCTATTTTGAAGTAGC+CGG | - | chr5.2:54762872-54762891 | MS.gene010172:CDS | 35.0% |
| !!! | CTTTTCCCTGTTTTTGAATC+TGG | - | chr5.2:54763166-54763185 | MS.gene010172:CDS | 35.0% |
| !!! | GTGCTGTTTTATCAGCAATT+GGG | - | chr5.2:54763656-54763675 | MS.gene010172:CDS | 35.0% |
| !!! | TGCTTATCAAGTTTTGGGTA+TGG | - | chr5.2:54763705-54763724 | MS.gene010172:CDS | 35.0% |
| ATAACAAAACCACCGTTTCC+TGG | + | chr5.2:54763028-54763047 | None:intergenic | 40.0% | |
| CCCATTAATGAGCCTGAAAA+TGG | + | chr5.2:54763073-54763092 | None:intergenic | 40.0% | |
| CGGCTACTTCAAAATAGATG+AGG | + | chr5.2:54762874-54762893 | None:intergenic | 40.0% | |
| GAATTAACCACCGTTTATCC+AGG | - | chr5.2:54763007-54763026 | MS.gene010172:CDS | 40.0% | |
| GACCTAACTCCACAAAACTT+GGG | + | chr5.2:54763748-54763767 | None:intergenic | 40.0% | |
| GAGGAATATGAGAGGGATTA+GGG | + | chr5.2:54762855-54762874 | None:intergenic | 40.0% | |
| GATACCAAAATACCCAACCA+AGG | + | chr5.2:54763787-54763806 | None:intergenic | 40.0% | |
| GCCAACCAGATTCAAAAACA+GGG | + | chr5.2:54763174-54763193 | None:intergenic | 40.0% | |
| GGTACATGGAAATTCCTTAG+TGG | - | chr5.2:54763091-54763110 | MS.gene010172:CDS | 40.0% | |
| GTTATGTGTTTGGTACCATC+TGG | - | chr5.2:54763982-54764001 | MS.gene010172:CDS | 40.0% | |
| TCAGCAGTTATAAGAGCTTC+TGG | + | chr5.2:54762989-54763008 | None:intergenic | 40.0% | |
| TGACCTAACTCCACAAAACT+TGG | + | chr5.2:54763749-54763768 | None:intergenic | 40.0% | |
| TGAGGAATATGAGAGGGATT+AGG | + | chr5.2:54762856-54762875 | None:intergenic | 40.0% | |
| ! | AAATGGGCCGAAAGCTTTTT+CGG | + | chr5.2:54763056-54763075 | None:intergenic | 40.0% |
| ! | AGTGGTTTGATGACTATAGG+TGG | - | chr5.2:54764054-54764073 | MS.gene010172:CDS | 40.0% |
| ! | GGAATTTTGCCCAAGTTTTG+TGG | - | chr5.2:54763736-54763755 | MS.gene010172:CDS | 40.0% |
| ! | GTGAGTGGTTTGATGACTAT+AGG | - | chr5.2:54764051-54764070 | MS.gene010172:CDS | 40.0% |
| ! | GTGGTTTGATGACTATAGGT+GGG | - | chr5.2:54764055-54764074 | MS.gene010172:CDS | 40.0% |
| ! | TACACCTTGGTTGGGTATTT+TGG | - | chr5.2:54763780-54763799 | MS.gene010172:CDS | 40.0% |
| ! | TCTGGAATGCTCCAAATGAA+AGG | + | chr5.2:54762971-54762990 | None:intergenic | 40.0% |
| ! | TTGATGACTATAGGTGGGAT+TGG | - | chr5.2:54764060-54764079 | MS.gene010172:CDS | 40.0% |
| !! | AAGACTGTCTTTTTGGTGAG+TGG | - | chr5.2:54764036-54764055 | MS.gene010172:CDS | 40.0% |
| !! | CCCATTTTCAGGCTCATTAA+TGG | - | chr5.2:54763069-54763088 | MS.gene010172:CDS | 40.0% |
| !! | GTTTTGGGTATGGCTGAAAT+TGG | - | chr5.2:54763715-54763734 | MS.gene010172:CDS | 40.0% |
| !! | TAGGGTTAGTTTCTTTGTGG+TGG | + | chr5.2:54762837-54762856 | None:intergenic | 40.0% |
| !!! | ATCTATTTTGAAGTAGCCGG+CGG | - | chr5.2:54762875-54762894 | MS.gene010172:CDS | 40.0% |
| !!! | GAAACGGTGGTTTTGTTATC+TGG | - | chr5.2:54763029-54763048 | MS.gene010172:CDS | 40.0% |
| !!! | GGTGCTGTTTTATCAGCAAT+TGG | - | chr5.2:54763655-54763674 | MS.gene010172:CDS | 40.0% |
| !!! | TCCCTGTTTTTGAATCTGGT+TGG | - | chr5.2:54763170-54763189 | MS.gene010172:CDS | 40.0% |
| !!! | TGTGGTGGATTTTTTGGGAA+TGG | + | chr5.2:54762822-54762841 | None:intergenic | 40.0% |
| ACCACCGTTTATCCAGGAAA+CGG | - | chr5.2:54763013-54763032 | MS.gene010172:CDS | 45.0% | |
| ACCACCGTTTCCTGGATAAA+CGG | + | chr5.2:54763020-54763039 | None:intergenic | 45.0% | |
| ATCTGGGCCGAAAAAGCTTT+CGG | - | chr5.2:54763046-54763065 | MS.gene010172:CDS | 45.0% | |
| CAAGCTGCTGAGATTATTGC+TGG | - | chr5.2:54763604-54763623 | MS.gene010172:CDS | 45.0% | |
| GCTCCAGTAACAGCAAAAAG+TGG | + | chr5.2:54763541-54763560 | None:intergenic | 45.0% | |
| GGCCAACCAGATTCAAAAAC+AGG | + | chr5.2:54763175-54763194 | None:intergenic | 45.0% | |
| ! | AAAGCTTTCGGCCCATTTTC+AGG | - | chr5.2:54763058-54763077 | MS.gene010172:CDS | 45.0% |
| ! | CAGGCTCATTAATGGGTACA+TGG | - | chr5.2:54763077-54763096 | MS.gene010172:CDS | 45.0% |
| !! | TGCCCAAGTTTTGTGGAGTT+AGG | - | chr5.2:54763743-54763762 | MS.gene010172:CDS | 45.0% |
| !!! | GGATTTTTTGGGAATGGTGG+TGG | + | chr5.2:54762816-54762835 | None:intergenic | 45.0% |
| !!! | GGTGGATTTTTTGGGAATGG+TGG | + | chr5.2:54762819-54762838 | None:intergenic | 45.0% |
| !!! | TTTTTTGGGAATGGTGGTGG+TGG | + | chr5.2:54762813-54762832 | None:intergenic | 45.0% |
| ACCGTTTATCCAGGAAACGG+TGG | - | chr5.2:54763016-54763035 | MS.gene010172:CDS | 50.0% | |
| ACCGTTTCCTGGATAAACGG+TGG | + | chr5.2:54763017-54763036 | None:intergenic | 50.0% | |
| ! | AAGCCGAGAAGTGCAAAGAG+GGG | + | chr5.2:54762938-54762957 | None:intergenic | 50.0% |
| ! | GAAGCCGAGAAGTGCAAAGA+GGG | + | chr5.2:54762939-54762958 | None:intergenic | 50.0% |
| ! | AGCCGAGAAGTGCAAAGAGG+GGG | + | chr5.2:54762937-54762956 | None:intergenic | 55.0% |
| ! | GGAAGCCGAGAAGTGCAAAG+AGG | + | chr5.2:54762940-54762959 | None:intergenic | 55.0% |
| !! | TTTGGGAATGGTGGTGGTGG+TGG | + | chr5.2:54762810-54762829 | None:intergenic | 55.0% |
| GGCCCCCTCTTTGCACTTCT+CGG | - | chr5.2:54762932-54762951 | MS.gene010172:CDS | 60.0% | |
| TGGTGGTTGGAGCGGTGGAA+AGG | + | chr5.2:54762787-54762806 | None:intergenic | 60.0% | |
| ! | GAGAAGTGCAAAGAGGGGGC+CGG | + | chr5.2:54762933-54762952 | None:intergenic | 60.0% |
| !! | AATGGTGGTGGTGGTGGTGG+TGG | + | chr5.2:54762804-54762823 | None:intergenic | 60.0% |
| AAGTGCAAAGAGGGGGCCGG+CGG | + | chr5.2:54762930-54762949 | None:intergenic | 65.0% | |
| GAAGTAGCCGGCGGCCCATA+CGG | - | chr5.2:54762884-54762903 | MS.gene010172:CDS | 65.0% | |
| TTCTTCGCCGTATGGGCCGC+CGG | + | chr5.2:54762894-54762913 | None:intergenic | 65.0% | |
| ! | ACGGCGGGTTCTTCGCCGTA+TGG | + | chr5.2:54762902-54762921 | None:intergenic | 65.0% |
| ! | CGGCGGGTTCTTCGCCGTAT+GGG | + | chr5.2:54762901-54762920 | None:intergenic | 65.0% |
| !! | GGGAATGGTGGTGGTGGTGG+TGG | + | chr5.2:54762807-54762826 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTTGGAG+CGG | + | chr5.2:54762795-54762814 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGGTGGTGGT+TGG | + | chr5.2:54762800-54762819 | None:intergenic | 65.0% |
| GAACCCGCCGTTCAAGCCGC+CGG | - | chr5.2:54762911-54762930 | MS.gene010172:CDS | 70.0% | |
| !! | GGTGGTGGTGGTTGGAGCGG+TGG | + | chr5.2:54762792-54762811 | None:intergenic | 70.0% |
| GAGGGGGCCGGCGGCTTGAA+CGG | + | chr5.2:54762921-54762940 | None:intergenic | 75.0% | |
| ! | GGGCCGGCGGCTTGAACGGC+GGG | + | chr5.2:54762917-54762936 | None:intergenic | 80.0% |
| ! | GGGGCCGGCGGCTTGAACGG+CGG | + | chr5.2:54762918-54762937 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 54762770 | 54764179 | 54762770 | ID=MS.gene010172 |
| chr5.2 | mRNA | 54762770 | 54764179 | 54762770 | ID=MS.gene010172.t1;Parent=MS.gene010172 |
| chr5.2 | exon | 54762770 | 54764179 | 54762770 | ID=MS.gene010172.t1.exon1;Parent=MS.gene010172.t1 |
| chr5.2 | CDS | 54762770 | 54764179 | 54762770 | ID=cds.MS.gene010172.t1;Parent=MS.gene010172.t1 |
| Gene Sequence |
| Protein sequence |
