AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010965


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010965.t1 MTR_7g451890 88.413 397 45 1 1 396 6 402 0.0 691
MS.gene010965.t1 MTR_7g047780 89.169 397 42 1 1 396 6 402 0.0 687
MS.gene010965.t1 MTR_7g050750 87.121 396 50 1 2 396 1 396 0.0 676
MS.gene010965.t1 MTR_7g050810 84.518 394 60 1 4 396 11 404 0.0 655
MS.gene010965.t1 MTR_3g101180 65.491 397 130 3 5 394 2 398 0.0 510
MS.gene010965.t1 MTR_8g461160 65.051 392 136 1 5 395 2 393 1.17e-173 490
MS.gene010965.t1 MTR_3g101010 64.010 389 135 3 9 396 5 389 2.29e-171 484
MS.gene010965.t1 MTR_7g050830 77.429 319 40 3 4 301 11 318 8.93e-171 480
MS.gene010965.t1 MTR_3g101130 63.333 390 135 4 9 396 6 389 1.40e-169 479
MS.gene010965.t1 MTR_4g045707 61.381 391 140 4 9 396 6 388 1.02e-165 469
MS.gene010965.t1 MTR_3g018740 62.341 393 136 5 7 395 3 387 1.96e-165 469
MS.gene010965.t1 MTR_8g027395 59.079 391 151 3 7 396 15 397 1.86e-158 451
MS.gene010965.t1 MTR_3g101030 57.320 403 143 6 15 396 35 429 1.74e-152 437
MS.gene010965.t1 MTR_3g048000 57.584 389 135 6 10 394 28 390 5.12e-151 432
MS.gene010965.t1 MTR_4g088525 59.783 368 131 3 33 394 11 367 2.24e-148 425
MS.gene010965.t1 MTR_8g027420 56.266 391 151 4 7 396 4 375 4.66e-148 424
MS.gene010965.t1 MTR_3g101200 57.252 393 140 6 3 394 25 390 5.07e-146 420
MS.gene010965.t1 MTR_2g046030 55.584 394 161 5 7 395 3 387 8.13e-145 417
MS.gene010965.t1 MTR_2g045980 55.330 394 162 5 7 395 3 387 3.59e-144 415
MS.gene010965.t1 MTR_3g101050 57.881 387 135 5 13 394 33 396 4.62e-144 415
MS.gene010965.t1 MTR_4g088535 55.208 384 147 4 9 391 7 366 8.09e-134 388
MS.gene010965.t1 MTR_3g015620 54.430 395 151 6 4 395 11 379 1.83e-133 387
MS.gene010965.t1 MTR_3g101190 52.674 374 111 4 24 396 4 312 1.26e-126 367
MS.gene010965.t1 MTR_3g102920 52.185 389 137 7 13 394 62 408 2.97e-124 365
MS.gene010965.t1 MTR_3g100995 63.281 256 89 2 141 396 14 264 2.37e-115 337
MS.gene010965.t1 MTR_3g018747 60.837 263 85 4 134 395 9 254 2.10e-103 306
MS.gene010965.t1 MTR_3g100010 49.841 315 109 3 31 311 37 336 4.43e-97 293
MS.gene010965.t1 MTR_3g015760 60.755 265 94 4 134 395 23 280 4.45e-97 291
MS.gene010965.t1 MTR_3g111160 61.504 226 77 4 175 396 1 220 5.95e-84 255
MS.gene010965.t1 MTR_3g100520 60.268 224 72 3 175 396 1 209 1.21e-83 254
MS.gene010965.t1 MTR_3g114310 40.789 380 202 10 33 396 38 410 1.56e-82 258
MS.gene010965.t1 MTR_3g101110 56.780 236 74 3 137 370 71 280 5.03e-80 248
MS.gene010965.t1 MTR_3g099970 59.184 196 63 2 134 329 20 198 2.94e-73 227
MS.gene010965.t1 MTR_2g046410 55.238 210 84 3 191 395 144 348 1.60e-70 225
MS.gene010965.t1 MTR_3g101150 65.823 158 50 2 240 394 1 157 7.49e-67 209
MS.gene010965.t1 MTR_3g101020 53.439 189 59 2 208 396 1 160 1.19e-60 193
MS.gene010965.t1 MTR_3g102870 53.503 157 73 0 197 353 1 157 9.54e-54 176
MS.gene010965.t1 MTR_3g111150 50.847 177 62 3 12 188 2 153 4.62e-52 171
MS.gene010965.t1 MTR_3g100990 55.118 127 54 2 9 134 5 129 1.34e-33 131
MS.gene010965.t1 MTR_3g101140 49.515 103 51 1 294 396 15 116 2.33e-22 91.7
MS.gene010965.t1 MTR_4g093550 48.276 87 43 1 7 93 4 88 3.70e-15 70.9
MS.gene010965.t1 MTR_6g046890 56.250 64 28 0 26 89 14 77 3.62e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010965.t1 AT1G47710 53.018 381 173 5 17 394 13 390 5.40e-137 397
MS.gene010965.t1 AT1G47710 51.918 391 182 5 7 394 30 417 3.37e-136 396
MS.gene010965.t1 AT2G25240 47.570 391 190 8 7 393 3 382 1.97e-116 344
MS.gene010965.t1 AT2G26390 44.924 394 200 6 7 393 3 386 4.09e-113 336
MS.gene010965.t1 AT3G45220 43.325 397 206 6 7 393 3 390 1.22e-109 327
MS.gene010965.t1 AT1G62170 43.434 396 187 7 7 393 64 431 6.33e-104 314
MS.gene010965.t1 AT1G64030 45.013 391 189 6 7 393 3 371 8.29e-104 312
MS.gene010965.t1 AT2G14540 46.995 366 167 6 32 393 55 397 8.43e-100 303
MS.gene010965.t1 AT1G62170 40.093 429 187 8 7 393 64 464 1.21e-96 296
MS.gene010965.t1 AT2G35580 44.751 362 170 9 39 393 33 371 6.17e-95 289
MS.gene010965.t1 AT1G64010 45.249 221 93 5 175 393 1 195 1.07e-58 190
MS.gene010965.t1 AT1G64010 44.660 206 86 5 190 393 2 181 4.86e-51 169
MS.gene010965.t1 AT1G63280 59.322 118 44 2 131 246 5 120 1.56e-38 135
MS.gene010965.t1 AT1G62160 42.162 185 76 4 213 393 61 218 1.56e-33 125
MS.gene010965.t1 AT1G51330 52.679 112 50 3 132 240 29 140 1.48e-26 105
MS.gene010965.t1 AT1G64020 35.780 109 68 2 17 124 13 120 2.60e-13 66.6

Find 89 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAAAGAAGTGAATTTA+TGG 0.185032 7.1:-51217160 MS.gene010965:CDS
AGTAAAGAACTTTATGTTTC+CGG 0.199606 7.1:-51216618 MS.gene010965:CDS
ACTGAGTTGCTCAAGAAATT+AGG 0.229973 7.1:-51216696 MS.gene010965:CDS
CCATCTTTGCCTTGTTTATA+AGG 0.242434 7.1:+51216891 None:intergenic
TTTATTCTTGCTGGTCATAA+AGG 0.249358 7.1:+51216956 None:intergenic
GTCAAACCTCCCATAGAAAA+AGG 0.264352 7.1:+51216663 None:intergenic
ACATAAAGTTCTTTACTAAT+AGG 0.293337 7.1:+51216624 None:intergenic
GACGAACTGTTTATTCTTGC+TGG 0.315246 7.1:+51216947 None:intergenic
CACCTTTCCAACAAAGAGTA+TGG 0.347373 7.1:+51216425 None:intergenic
CCTTGTTTGTCTTATGTCAA+TGG 0.361171 7.1:-51218816 MS.gene010965:CDS
CTTGTTTCTTCTGTGCTCTC+CGG 0.362058 7.1:-51218855 MS.gene010965:CDS
TTGTTTCTTCTGTGCTCTCC+GGG 0.381696 7.1:-51218854 MS.gene010965:CDS
AAGTGGAAGTAGGCAAGTTC+CGG 0.403387 7.1:-51216755 MS.gene010965:CDS
GTCTTATGTCAATGGTGTGT+GGG 0.408134 7.1:-51218808 MS.gene010965:CDS
CCTTATAAACAAGGCAAAGA+TGG 0.409361 7.1:-51216891 MS.gene010965:CDS
TTATTCTTGCTGGTCATAAA+GGG 0.409548 7.1:+51216957 None:intergenic
TTGATTGGATAACAAGTGTT+TGG 0.423243 7.1:+51219031 None:intergenic
AGAAACAAGCTGAGAGCATA+AGG 0.429286 7.1:+51218869 None:intergenic
TCAGAAGAAATATTGAATCT+TGG 0.431161 7.1:+51216729 None:intergenic
AGTGGAACCATACTCTTTGT+TGG 0.431916 7.1:-51216432 MS.gene010965:CDS
AGTAGTCATAAGTTGTTTGA+AGG 0.434567 7.1:+51218758 None:intergenic
GTTGTCAGCTTTGATTGATA+AGG 0.435094 7.1:-51216823 MS.gene010965:CDS
AGCACGGTGTTGAGCGATAA+TGG 0.435236 7.1:+51218978 None:intergenic
GTCATAAGTTGTTTGAAGGA+AGG 0.435473 7.1:+51218762 None:intergenic
TTTCTTCCAGATGCAAAAGA+AGG 0.445127 7.1:-51216846 MS.gene010965:CDS
CAAGTGTTTGGTGATGTTCA+TGG 0.446905 7.1:+51219043 None:intergenic
GAGAAAAGAAGTGAATTTAT+GGG 0.447487 7.1:-51217159 MS.gene010965:CDS
AAATATTGAATCTTGGAATC+CGG 0.456839 7.1:+51216736 None:intergenic
TCAATTGGAGGGACCGGAGG+GGG 0.459884 7.1:+51216501 None:intergenic
AGGGCCACCGGTGCGAGCCC+CGG 0.461062 7.1:+51218836 None:intergenic
GTGCTCTCCGGGGCTCGCAC+CGG 0.464334 7.1:-51218843 MS.gene010965:CDS
TTCATTGAAGTAAATGAAGA+AGG 0.465672 7.1:-51216579 MS.gene010965:CDS
TGACTGTTGGCATGGTAGGC+GGG 0.465714 7.1:-51216539 MS.gene010965:CDS
TGGGCCGAAAAGAAGACAAA+AGG 0.471958 7.1:-51217140 MS.gene010965:CDS
AAGGTGGTCAATCCTCTTGA+TGG 0.480370 7.1:-51216408 MS.gene010965:CDS
TGTTCATGGAAACGTTGGTT+AGG 0.481229 7.1:+51219057 None:intergenic
CTCTCCGGGGCTCGCACCGG+TGG 0.491572 7.1:-51218840 MS.gene010965:CDS
TGGTCAGCTACAAAGTCAAT+TGG 0.500762 7.1:+51216486 None:intergenic
CTTATAAACAAGGCAAAGAT+GGG 0.514546 7.1:-51216890 MS.gene010965:CDS
TTCAAGATCTTCTTCCATGC+GGG 0.517087 7.1:-51217112 MS.gene010965:CDS
AACCATACTCTTTGTTGGAA+AGG 0.525947 7.1:-51216427 MS.gene010965:CDS
ACAAAGTCAATTGGAGGGAC+CGG 0.526884 7.1:+51216495 None:intergenic
GTGACTGTTGGCATGGTAGG+CGG 0.527948 7.1:-51216540 MS.gene010965:CDS
GCAAATGCACTATACTTCAA+AGG 0.528381 7.1:-51217059 MS.gene010965:CDS
GCGGTGACTGTTGGCATGGT+AGG 0.529850 7.1:-51216543 MS.gene010965:CDS
CTTGGTCTTCCTTATAAACA+AGG 0.530839 7.1:-51216900 MS.gene010965:CDS
GTGCTCAGTATGATCGCTAC+CGG 0.530879 7.1:-51218960 MS.gene010965:CDS
AGTCAATTGGAGGGACCGGA+GGG 0.531920 7.1:+51216499 None:intergenic
GAAAGACTTCTGAAATATGC+CGG 0.537794 7.1:+51216599 None:intergenic
GTCAATTGGAGGGACCGGAG+GGG 0.545085 7.1:+51216500 None:intergenic
TGTCTTATGTCAATGGTGTG+TGG 0.547638 7.1:-51218809 MS.gene010965:CDS
TTACTGACTTTCCATTGAGA+AGG 0.552540 7.1:+51216985 None:intergenic
TTCTTCCAGATGCAAAAGAA+GGG 0.553642 7.1:-51216845 MS.gene010965:CDS
CACTATACTTCAAAGGAGTG+TGG 0.556458 7.1:-51217052 MS.gene010965:CDS
GGGCCGAAAAGAAGACAAAA+GGG 0.559915 7.1:-51217139 MS.gene010965:CDS
GGTGGATTCAGACTGGAGAA+AGG 0.560742 7.1:+51218905 None:intergenic
TTTCTCCAGTCTGAATCCAC+CGG 0.562078 7.1:-51218903 MS.gene010965:CDS
TGCTGTTGATTTCGTCAACA+AGG 0.566985 7.1:-51218715 MS.gene010965:intron
AAAGCTGCAGCGGTGACTGT+TGG 0.567765 7.1:-51216552 MS.gene010965:CDS
CATACTCTTTGTTGGAAAGG+TGG 0.571116 7.1:-51216424 MS.gene010965:CDS
AGGTGGTCAATCCTCTTGAT+GGG 0.571602 7.1:-51216407 MS.gene010965:CDS
TTGAGTGGGACCCTCGGACC+CGG 0.572311 7.1:+51218941 None:intergenic
TGTTTGAAGGAAGGTTGAAG+AGG 0.574991 7.1:+51218771 None:intergenic
TCTCAATGGAAAGTCAGTAA+AGG 0.577150 7.1:-51216982 MS.gene010965:CDS
TATGATCGCTACCGGGTCCG+AGG 0.579880 7.1:-51218952 MS.gene010965:CDS
AAGTCAATTGGAGGGACCGG+AGG 0.584759 7.1:+51216498 None:intergenic
GCATAAGGATTTGAGATCAC+CGG 0.585769 7.1:+51218884 None:intergenic
ACTATACTTCAAAGGAGTGT+GGG 0.588475 7.1:-51217051 MS.gene010965:CDS
GATCACCGGTGGATTCAGAC+TGG 0.590752 7.1:+51218898 None:intergenic
ATTCAAGATCTTCTTCCATG+CGG 0.601926 7.1:-51217113 MS.gene010965:CDS
TTCAACAATCACCCATCAAG+AGG 0.605491 7.1:+51216396 None:intergenic
ATAAGACAAACAAGGGCCAC+CGG 0.606309 7.1:+51218824 None:intergenic
TCAGCTACAAAGTCAATTGG+AGG 0.607657 7.1:+51216489 None:intergenic
ATGATCGCTACCGGGTCCGA+GGG 0.612325 7.1:-51218951 MS.gene010965:CDS
ATGGTGATGCAGAATCTCAT+CGG 0.612465 7.1:-51219095 MS.gene010965:CDS
CTTGTTTATAAGGAAGACCA+AGG 0.612910 7.1:+51216901 None:intergenic
TGCTCAGTATGATCGCTACC+GGG 0.616181 7.1:-51218959 MS.gene010965:CDS
GTTTGATACTTCGAAAACAA+AGG 0.618701 7.1:-51217021 MS.gene010965:CDS
TAAGGATTTGAGATCACCGG+TGG 0.631231 7.1:+51218887 None:intergenic
GGTGATGTTCATGGAAACGT+TGG 0.634641 7.1:+51219052 None:intergenic
TGTTTCTTCTGTGCTCTCCG+GGG 0.647438 7.1:-51218853 MS.gene010965:CDS
TGCAGCGGTGACTGTTGGCA+TGG 0.650418 7.1:-51216547 MS.gene010965:CDS
CAGCTACAAAGTCAATTGGA+GGG 0.661369 7.1:+51216490 None:intergenic
AGAAGGTACGAAAGCTGCAG+CGG 0.664748 7.1:-51216562 MS.gene010965:CDS
CCATTGACATAAGACAAACA+AGG 0.672117 7.1:+51218816 None:intergenic
CATTGACATAAGACAAACAA+GGG 0.681594 7.1:+51218817 None:intergenic
AAGCTGTGAACTGACCCGCA+TGG 0.684890 7.1:+51217098 None:intergenic
GGTCAGTTCACAGCTTAACG+AGG 0.693418 7.1:-51217091 MS.gene010965:CDS
GGTAGCGATCATACTGAGCA+CGG 0.705369 7.1:+51218962 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAGTTATATGTAAAA+GGG + chr7.1:51217634-51217653 None:intergenic 15.0%
!!! AAAACTTAAATTTTTCTGTT+TGG + chr7.1:51217657-51217676 None:intergenic 15.0%
!!! AAATCATTTGAATTTTTTCA+TGG + chr7.1:51218268-51218287 None:intergenic 15.0%
!!! AATCATTTGAATTTTTTCAT+GGG + chr7.1:51218267-51218286 None:intergenic 15.0%
!!! ATATTTTCTTTTTTTAGTAG+AGG - chr7.1:51216860-51216879 MS.gene010965:CDS 15.0%
!!! ATTAGTAACAGTTTATTTTA+GGG + chr7.1:51217475-51217494 None:intergenic 15.0%
!!! TATTAGTAACAGTTTATTTT+AGG + chr7.1:51217476-51217495 None:intergenic 15.0%
!!! TCAAATGATTTATTTTAACA+TGG - chr7.1:51218277-51218296 MS.gene010965:intron 15.0%
!! AAAAAACAATAATGTGACTT+TGG - chr7.1:51217870-51217889 MS.gene010965:intron 20.0%
!! AAAATATGACAAGGATAATT+AGG - chr7.1:51218011-51218030 MS.gene010965:intron 20.0%
!! AAATATGACAAGGATAATTA+GGG - chr7.1:51218012-51218031 MS.gene010965:intron 20.0%
!! ACATAAAGTTCTTTACTAAT+AGG + chr7.1:51218878-51218897 None:intergenic 20.0%
!! GAAACAAAGTTATATGTAAA+AGG + chr7.1:51217635-51217654 None:intergenic 20.0%
!! GCTCATTCTATTAAAATAAT+AGG - chr7.1:51217130-51217149 MS.gene010965:CDS 20.0%
!! TAAACTGTTACTAATAATGT+CGG - chr7.1:51217480-51217499 MS.gene010965:intron 20.0%
!!! CAATCTTTTGAGAAATAAAT+TGG + chr7.1:51217377-51217396 None:intergenic 20.0%
!!! TTTTCAATGCAAAAATTCTT+TGG + chr7.1:51217349-51217368 None:intergenic 20.0%
! AAATATTGAATCTTGGAATC+CGG + chr7.1:51218766-51218785 None:intergenic 25.0%
! ACTGTCTATAAAATATGACA+AGG - chr7.1:51218002-51218021 MS.gene010965:intron 25.0%
! AGTAAAGAACTTTATGTTTC+CGG - chr7.1:51218881-51218900 MS.gene010965:CDS 25.0%
! CTCTGATCAGAAATAAAAAA+GGG + chr7.1:51219039-51219058 None:intergenic 25.0%
! GAATGAGCATATTGATATTT+AGG + chr7.1:51217273-51217292 None:intergenic 25.0%
! GAGAAAAGAAGTGAATTTAT+GGG - chr7.1:51218340-51218359 MS.gene010965:intron 25.0%
! GATTGGATTGTAATGTTAAT+AGG + chr7.1:51217581-51217600 None:intergenic 25.0%
! GTTGATCTAGAAATTTGTAA+GGG + chr7.1:51217612-51217631 None:intergenic 25.0%
! TCAGAAGAAATATTGAATCT+TGG + chr7.1:51218773-51218792 None:intergenic 25.0%
! TCTCTGATCAGAAATAAAAA+AGG + chr7.1:51219040-51219059 None:intergenic 25.0%
! TGAGAAAAGAAGTGAATTTA+TGG - chr7.1:51218339-51218358 MS.gene010965:intron 25.0%
! TTATTTGTTCTCACAAGTTA+GGG - chr7.1:51216818-51216837 MS.gene010965:CDS 25.0%
! TTCATTGAAGTAAATGAAGA+AGG - chr7.1:51218920-51218939 MS.gene010965:CDS 25.0%
! TTTATTTGTTCTCACAAGTT+AGG - chr7.1:51216817-51216836 MS.gene010965:CDS 25.0%
!! TTGACTTTACCTTTTTCTAT+GGG - chr7.1:51218827-51218846 MS.gene010965:CDS 25.0%
!!! ACAAGTTTGTTTTTCACAAT+TGG + chr7.1:51217814-51217833 None:intergenic 25.0%
!!! ATTGACTTTACCTTTTTCTA+TGG - chr7.1:51218826-51218845 MS.gene010965:CDS 25.0%
!!! CTTTTCTTTGAGATTTTGAT+TGG + chr7.1:51216486-51216505 None:intergenic 25.0%
!!! TACAATTGATACTGATTTGA+AGG - chr7.1:51218307-51218326 MS.gene010965:intron 25.0%
AATAAACCTATCCAGCTAAT+TGG + chr7.1:51218142-51218161 None:intergenic 30.0%
ACATATTGAGCATATTGAAC+AGG + chr7.1:51217164-51217183 None:intergenic 30.0%
ACTCGTTAGATTTAACATGA+TGG + chr7.1:51217103-51217122 None:intergenic 30.0%
ACTTGTGTATATATAGTGCA+AGG - chr7.1:51217828-51217847 MS.gene010965:intron 30.0%
AGGTTAAATGTCTCAGAAAA+TGG + chr7.1:51218054-51218073 None:intergenic 30.0%
AGTAGTCATAAGTTGTTTGA+AGG + chr7.1:51216744-51216763 None:intergenic 30.0%
AGTCCATTATTGTGCTTTAA+AGG + chr7.1:51217552-51217571 None:intergenic 30.0%
CATTGACATAAGACAAACAA+GGG + chr7.1:51216685-51216704 None:intergenic 30.0%
CTTATAAACAAGGCAAAGAT+GGG - chr7.1:51218609-51218628 MS.gene010965:intron 30.0%
GCACACTTGTATGTAATATA+TGG + chr7.1:51217530-51217549 None:intergenic 30.0%
GGTTGATCTAGAAATTTGTA+AGG + chr7.1:51217613-51217632 None:intergenic 30.0%
GTTCAATATGCTCAATATGT+AGG - chr7.1:51217164-51217183 MS.gene010965:CDS 30.0%
GTTTGATACTTCGAAAACAA+AGG - chr7.1:51218478-51218497 MS.gene010965:intron 30.0%
TATCTTAATATGTGCCCTAA+GGG + chr7.1:51217326-51217345 None:intergenic 30.0%
TATGAAAGACAGCACAAAAA+CGG + chr7.1:51216960-51216979 None:intergenic 30.0%
TCAACACAAAGTTTGTAAGT+CGG + chr7.1:51217201-51217220 None:intergenic 30.0%
TGATCAGAAATAAAAAAGGG+TGG + chr7.1:51219036-51219055 None:intergenic 30.0%
TTATTCTTGCTGGTCATAAA+GGG + chr7.1:51218545-51218564 None:intergenic 30.0%
TTGATTGGATAACAAGTGTT+TGG + chr7.1:51216471-51216490 None:intergenic 30.0%
TTGTATTCAAAATGAGTCCA+AGG + chr7.1:51218074-51218093 None:intergenic 30.0%
TTTATTCTTGCTGGTCATAA+AGG + chr7.1:51218546-51218565 None:intergenic 30.0%
! AACCTTAACATGTGCTATTA+AGG - chr7.1:51217434-51217453 MS.gene010965:intron 30.0%
! ATTTTTGAACAGACCATGAT+AGG - chr7.1:51217072-51217091 MS.gene010965:CDS 30.0%
! TTCTCTGTTGCTTGATTAAT+TGG - chr7.1:51217236-51217255 MS.gene010965:intron 30.0%
!! TATGATTTTGACCTTCTCAA+TGG - chr7.1:51218503-51218522 MS.gene010965:intron 30.0%
!!! CATAAGTTAGTTTTCAGTGT+TGG - chr7.1:51217746-51217765 MS.gene010965:intron 30.0%
!!! TTTGATGGTTTTAAAGTCCT+TGG - chr7.1:51218581-51218600 MS.gene010965:intron 30.0%
!!! TTTTCTGAGACATTTAACCT+TGG - chr7.1:51218054-51218073 MS.gene010965:intron 30.0%
AACCATACTCTTTGTTGGAA+AGG - chr7.1:51219072-51219091 MS.gene010965:CDS 35.0%
ACTGAGTTGCTCAAGAAATT+AGG - chr7.1:51218803-51218822 MS.gene010965:CDS 35.0%
AGAAACTCACACACAATTTC+TGG - chr7.1:51216891-51216910 MS.gene010965:CDS 35.0%
ATTCAAGATCTTCTTCCATG+CGG - chr7.1:51218386-51218405 MS.gene010965:intron 35.0%
CAATCTTCCTCGTAAAAAAG+TGG - chr7.1:51218727-51218746 MS.gene010965:CDS 35.0%
CCATTGACATAAGACAAACA+AGG + chr7.1:51216686-51216705 None:intergenic 35.0%
CCTTATAAACAAGGCAAAGA+TGG - chr7.1:51218608-51218627 MS.gene010965:intron 35.0%
CTTGTTTATAAGGAAGACCA+AGG + chr7.1:51218601-51218620 None:intergenic 35.0%
GCAAATGCACTATACTTCAA+AGG - chr7.1:51218440-51218459 MS.gene010965:intron 35.0%
GGATAATTAGGGCATGTAAT+TGG - chr7.1:51218023-51218042 MS.gene010965:intron 35.0%
GTATCTTAATATGTGCCCTA+AGG + chr7.1:51217327-51217346 None:intergenic 35.0%
GTCATAAGTTGTTTGAAGGA+AGG + chr7.1:51216740-51216759 None:intergenic 35.0%
TAATCAAGCAACAGAGAAAG+AGG + chr7.1:51217234-51217253 None:intergenic 35.0%
TATGGGAGGTTTGACAAAAA+TGG - chr7.1:51218844-51218863 MS.gene010965:CDS 35.0%
TCTCAATGGAAAGTCAGTAA+AGG - chr7.1:51218517-51218536 MS.gene010965:intron 35.0%
TCTCACTTTATCCAGTAGTT+AGG + chr7.1:51217781-51217800 None:intergenic 35.0%
TGCCTTAATAGCACATGTTA+AGG + chr7.1:51217439-51217458 None:intergenic 35.0%
TTCTTCCAGATGCAAAAGAA+GGG - chr7.1:51218654-51218673 MS.gene010965:intron 35.0%
TTGTAAGGGAGAAACATGAT+TGG + chr7.1:51217598-51217617 None:intergenic 35.0%
TTTCTTCCAGATGCAAAAGA+AGG - chr7.1:51218653-51218672 MS.gene010965:intron 35.0%
! AAGCCCTTTTGTCTTCTTTT+CGG + chr7.1:51218366-51218385 None:intergenic 35.0%
! ACTATACTTCAAAGGAGTGT+GGG - chr7.1:51218448-51218467 MS.gene010965:intron 35.0%
! ACTTTACCTTTTTCTATGGG+AGG - chr7.1:51218830-51218849 MS.gene010965:CDS 35.0%
! AGCTTCTGATTCTGAGTTTT+TGG - chr7.1:51218700-51218719 MS.gene010965:intron 35.0%
! CCTTGTTTGTCTTATGTCAA+TGG - chr7.1:51216683-51216702 MS.gene010965:CDS 35.0%
! CTGATCAGAGAAGATTTTAG+TGG - chr7.1:51219049-51219068 MS.gene010965:CDS 35.0%
! CTTGGTCTTCCTTATAAACA+AGG - chr7.1:51218599-51218618 MS.gene010965:intron 35.0%
! GCAAAATGAAAGCATGGAAA+GGG + chr7.1:51217720-51217739 None:intergenic 35.0%
! GTTGTCAGCTTTGATTGATA+AGG - chr7.1:51218676-51218695 MS.gene010965:intron 35.0%
! GTTTTTGTGCTGTCTTTCAT+AGG - chr7.1:51216959-51216978 MS.gene010965:CDS 35.0%
!! CCATCTTTGCCTTGTTTATA+AGG + chr7.1:51218611-51218630 None:intergenic 35.0%
!! GAAAGACTTCTGAAATATGC+CGG + chr7.1:51218903-51218922 None:intergenic 35.0%
!! GTGCCTTTAAAGCACAATAA+TGG - chr7.1:51217546-51217565 MS.gene010965:intron 35.0%
!! TTACTGACTTTCCATTGAGA+AGG + chr7.1:51218517-51218536 None:intergenic 35.0%
!!! GAGAGAAGTTGTTTTTGAGT+GGG + chr7.1:51216575-51216594 None:intergenic 35.0%
AGTGGAACCATACTCTTTGT+TGG - chr7.1:51219067-51219086 MS.gene010965:CDS 40.0%
CACCTTTCCAACAAAGAGTA+TGG + chr7.1:51219077-51219096 None:intergenic 40.0%
CACTATACTTCAAAGGAGTG+TGG - chr7.1:51218447-51218466 MS.gene010965:intron 40.0%
CAGCTAATTGGCAAGACATT+AGG + chr7.1:51218130-51218149 None:intergenic 40.0%
CAGCTACAAAGTCAATTGGA+GGG + chr7.1:51219012-51219031 None:intergenic 40.0%
CATACTCTTTGTTGGAAAGG+TGG - chr7.1:51219075-51219094 MS.gene010965:CDS 40.0%
CCATATACCCAAAAGAATGC+AGG - chr7.1:51217683-51217702 MS.gene010965:intron 40.0%
CCTCGTAAAAAAGTGGAAGT+AGG - chr7.1:51218734-51218753 MS.gene010965:CDS 40.0%
CTAATGTCTTGCCAATTAGC+TGG - chr7.1:51218128-51218147 MS.gene010965:intron 40.0%
GACGAACTGTTTATTCTTGC+TGG + chr7.1:51218555-51218574 None:intergenic 40.0%
GGATCAATCAACCTAACTAC+TGG - chr7.1:51217767-51217786 MS.gene010965:intron 40.0%
GTCAAACCTCCCATAGAAAA+AGG + chr7.1:51218839-51218858 None:intergenic 40.0%
GTCTTATGTCAATGGTGTGT+GGG - chr7.1:51216691-51216710 MS.gene010965:CDS 40.0%
TCAGCTACAAAGTCAATTGG+AGG + chr7.1:51219013-51219032 None:intergenic 40.0%
TGGTCAGCTACAAAGTCAAT+TGG + chr7.1:51219016-51219035 None:intergenic 40.0%
TGTCTTATGTCAATGGTGTG+TGG - chr7.1:51216690-51216709 MS.gene010965:CDS 40.0%
TGTTTGAAGGAAGGTTGAAG+AGG + chr7.1:51216731-51216750 None:intergenic 40.0%
TTCAAGATCTTCTTCCATGC+GGG - chr7.1:51218387-51218406 MS.gene010965:intron 40.0%
TTGCTTCCATACACCACATA+TGG + chr7.1:51218192-51218211 None:intergenic 40.0%
! AAATGCTAACTTGTGCCCTT+AGG - chr7.1:51217308-51217327 MS.gene010965:intron 40.0%
! AATGCTAACTTGTGCCCTTA+GGG - chr7.1:51217309-51217328 MS.gene010965:intron 40.0%
! AGAAACAAGCTGAGAGCATA+AGG + chr7.1:51216633-51216652 None:intergenic 40.0%
! AGTCTGAACCTGCATTCTTT+TGG + chr7.1:51217694-51217713 None:intergenic 40.0%
! ATGGTGATGCAGAATCTCAT+CGG - chr7.1:51216404-51216423 MS.gene010965:CDS 40.0%
! CAGTTCGTCACTTCTTTTGA+TGG - chr7.1:51218566-51218585 MS.gene010965:intron 40.0%
! CGCAAAATGAAAGCATGGAA+AGG + chr7.1:51217721-51217740 None:intergenic 40.0%
! GCATAAGGATTTGAGATCAC+CGG + chr7.1:51216618-51216637 None:intergenic 40.0%
! GTCTGAACCTGCATTCTTTT+GGG + chr7.1:51217693-51217712 None:intergenic 40.0%
! TGTTCATGGAAACGTTGGTT+AGG + chr7.1:51216445-51216464 None:intergenic 40.0%
!! CAAGTGTTTGGTGATGTTCA+TGG + chr7.1:51216459-51216478 None:intergenic 40.0%
!! CACAATTTCTGGTGTTAGCA+TGG - chr7.1:51216902-51216921 MS.gene010965:CDS 40.0%
!! CATGATGGATCAACCTATCA+TGG + chr7.1:51217088-51217107 None:intergenic 40.0%
!! CCTGCATTCTTTTGGGTATA+TGG + chr7.1:51217686-51217705 None:intergenic 40.0%
!! TGCTGTTGATTTCGTCAACA+AGG - chr7.1:51216784-51216803 MS.gene010965:CDS 40.0%
!!! CCTACTTCCACTTTTTTACG+AGG + chr7.1:51218737-51218756 None:intergenic 40.0%
!!! GGAGAGAAGTTGTTTTTGAG+TGG + chr7.1:51216576-51216595 None:intergenic 40.0%
AAGGTGGTCAATCCTCTTGA+TGG - chr7.1:51219091-51219110 MS.gene010965:CDS 45.0%
AAGTGGAAGTAGGCAAGTTC+CGG - chr7.1:51218744-51218763 MS.gene010965:CDS 45.0%
ACAAAGTCAATTGGAGGGAC+CGG + chr7.1:51219007-51219026 None:intergenic 45.0%
AGGTGGTCAATCCTCTTGAT+GGG - chr7.1:51219092-51219111 MS.gene010965:CDS 45.0%
ATAAGACAAACAAGGGCCAC+CGG + chr7.1:51216678-51216697 None:intergenic 45.0%
CACCACATATGGAGAGAGTT+AGG + chr7.1:51218181-51218200 None:intergenic 45.0%
CACCTAACTCTCTCCATATG+TGG - chr7.1:51218176-51218195 MS.gene010965:intron 45.0%
CTCTCTCCATATGTGGTGTA+TGG - chr7.1:51218183-51218202 MS.gene010965:intron 45.0%
GGGAGGTTTGACAAAAATGG+TGG - chr7.1:51218847-51218866 MS.gene010965:CDS 45.0%
GGGCCGAAAAGAAGACAAAA+GGG - chr7.1:51218360-51218379 MS.gene010965:intron 45.0%
GGTGATGTTCATGGAAACGT+TGG + chr7.1:51216450-51216469 None:intergenic 45.0%
GTAGTTAGTAGCACATGCGA+GGG - chr7.1:51217919-51217938 MS.gene010965:intron 45.0%
GTCTTGCCAATTAGCTGGAT+AGG - chr7.1:51218133-51218152 MS.gene010965:intron 45.0%
TCGCACGCAAAATGAAAGCA+TGG + chr7.1:51217726-51217745 None:intergenic 45.0%
TGGGCCGAAAAGAAGACAAA+AGG - chr7.1:51218359-51218378 MS.gene010965:intron 45.0%
TGTAGTTAGTAGCACATGCG+AGG - chr7.1:51217918-51217937 MS.gene010965:intron 45.0%
TTTCTCCAGTCTGAATCCAC+CGG - chr7.1:51216596-51216615 MS.gene010965:CDS 45.0%
! CTTGTTTCTTCTGTGCTCTC+CGG - chr7.1:51216644-51216663 MS.gene010965:CDS 45.0%
! GACAACCCTTCTTTTGCATC+TGG + chr7.1:51218662-51218681 None:intergenic 45.0%
! TAAGGATTTGAGATCACCGG+TGG + chr7.1:51216615-51216634 None:intergenic 45.0%
! TTGTTTCTTCTGTGCTCTCC+GGG - chr7.1:51216645-51216664 MS.gene010965:CDS 45.0%
!!! TTGTTTTTGAGTGGGACCCT+CGG + chr7.1:51216567-51216586 None:intergenic 45.0%
!! ATTATTATAGAAATATAATA+TGG - chr7.1:51217003-51217022 MS.gene010965:CDS 5.0%
GGTAGCGATCATACTGAGCA+CGG + chr7.1:51216540-51216559 None:intergenic 50.0%
GGTCAGTTCACAGCTTAACG+AGG - chr7.1:51218408-51218427 MS.gene010965:intron 50.0%
GTGCTCAGTATGATCGCTAC+CGG - chr7.1:51216539-51216558 MS.gene010965:CDS 50.0%
TGCTCAGTATGATCGCTACC+GGG - chr7.1:51216540-51216559 MS.gene010965:CDS 50.0%
TGTTTCTTCTGTGCTCTCCG+GGG - chr7.1:51216646-51216665 MS.gene010965:CDS 50.0%
! AGAAGGTACGAAAGCTGCAG+CGG - chr7.1:51218937-51218956 MS.gene010965:CDS 50.0%
! AGCACGGTGTTGAGCGATAA+TGG + chr7.1:51216524-51216543 None:intergenic 50.0%
! GGTGGATTCAGACTGGAGAA+AGG + chr7.1:51216597-51216616 None:intergenic 50.0%
AAAGCTGCAGCGGTGACTGT+TGG - chr7.1:51218947-51218966 MS.gene010965:CDS 55.0%
AAGCTGTGAACTGACCCGCA+TGG + chr7.1:51218404-51218423 None:intergenic 55.0%
AAGTCAATTGGAGGGACCGG+AGG + chr7.1:51219004-51219023 None:intergenic 55.0%
AGTCAATTGGAGGGACCGGA+GGG + chr7.1:51219003-51219022 None:intergenic 55.0%
GTGACTGTTGGCATGGTAGG+CGG - chr7.1:51218959-51218978 MS.gene010965:CDS 55.0%
TGACTGTTGGCATGGTAGGC+GGG - chr7.1:51218960-51218979 MS.gene010965:CDS 55.0%
! GATCACCGGTGGATTCAGAC+TGG + chr7.1:51216604-51216623 None:intergenic 55.0%
ATGATCGCTACCGGGTCCGA+GGG - chr7.1:51216548-51216567 MS.gene010965:CDS 60.0%
GCGGTGACTGTTGGCATGGT+AGG - chr7.1:51218956-51218975 MS.gene010965:CDS 60.0%
GTCAATTGGAGGGACCGGAG+GGG + chr7.1:51219002-51219021 None:intergenic 60.0%
TATGATCGCTACCGGGTCCG+AGG - chr7.1:51216547-51216566 MS.gene010965:CDS 60.0%
TCAATTGGAGGGACCGGAGG+GGG + chr7.1:51219001-51219020 None:intergenic 60.0%
TGCAGCGGTGACTGTTGGCA+TGG - chr7.1:51218952-51218971 MS.gene010965:CDS 60.0%
TGCTCCGTATAGACCCCCTC+CGG - chr7.1:51218985-51219004 MS.gene010965:CDS 60.0%
GGGACCGGAGGGGGTCTATA+CGG + chr7.1:51218992-51219011 None:intergenic 65.0%
TTGAGTGGGACCCTCGGACC+CGG + chr7.1:51216561-51216580 None:intergenic 65.0%
GTGCTCTCCGGGGCTCGCAC+CGG - chr7.1:51216656-51216675 MS.gene010965:CDS 75.0%
! AGGGCCACCGGTGCGAGCCC+CGG + chr7.1:51216666-51216685 None:intergenic 80.0%
! CTCTCCGGGGCTCGCACCGG+TGG - chr7.1:51216659-51216678 MS.gene010965:CDS 80.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 51216404 51219117 51216404 ID=MS.gene010965
chr7.1 mRNA 51216404 51219117 51216404 ID=MS.gene010965.t1;Parent=MS.gene010965
chr7.1 exon 51218716 51219117 51218716 ID=MS.gene010965.t1.exon1;Parent=MS.gene010965.t1
chr7.1 CDS 51218716 51219117 51218716 ID=cds.MS.gene010965.t1;Parent=MS.gene010965.t1
chr7.1 exon 51216404 51217192 51216404 ID=MS.gene010965.t1.exon2;Parent=MS.gene010965.t1
chr7.1 CDS 51216404 51217192 51216404 ID=cds.MS.gene010965.t1;Parent=MS.gene010965.t1
Gene Sequence

>MS.gene010965

ATGGTGATGCAGAATCTCATCGGAAAATCATTCACAAACCTAACCAACGTTTCCATGAACATCACCAAACACTTGTTATCCAATCAAAATCTCAAAGAAAAGAACGTTGTGTTTTCACCATTATCGCTCAACACCGTGCTCAGTATGATCGCTACCGGGTCCGAGGGTCCCACTCAAAAACAACTTCTCTCCTTTCTCCAGTCTGAATCCACCGGTGATCTCAAATCCTTATGCTCTCAGCTTGTTTCTTCTGTGCTCTCCGGGGCTCGCACCGGTGGCCCTTGTTTGTCTTATGTCAATGGTGTGTGGGTTGAACAGACAATTCCTCTTCAACCTTCCTTCAAACAACTTATGACTACTGATTTCAAAGCTGCTTTTGCTGCTGTTGATTTCGTCAACAAGGTACTAATGCTTTTATTTGTTCTCACAAGTTAGGGTTTGAAGTTTAGTGTTATCATATTTTCTTTTTTTAGTAGAGGAAATGATAAGAAACTCACACACAATTTCTGGTGTTAGCATGGTGTCTGCGTGTCTGTGACGTGCTGTTTTGTGTCCGTTTTTGTGCTGTCTTTCATAGGTGTTAAAACAATTATTTATGAATTATTATAGAAATATAATATGGTCAATTGTTATTAAAACACAAATCATCGATGAATAGTCTGATTGTTATTTTTGAACAGACCATGATAGGTTGATCCATCATGTTAAATCTAACGAGTTCAATATGCTCATTCTATTAAAATAATGTTAAATCTAACCTGTTCAATATGCTCAATATGTAGGTCTGATTGTTACCGACTTACAAACTTTGTGTTGAAGATTTTAATCCTCTTTCTCTGTTGCTTGATTAATTGGTTAAAGAGTGACCTAAATATCAATATGCTCATTCTATTAAAATAATAGGAAATGCTAACTTGTGCCCTTAGGGCACATATTAAGATACCAAAGAATTTTTGCATTGAAAATTGTGCCAATTTATTTCTCAAAAGATTGAAATTTAAATTTTCTCAATAAATACTTCTTTTTTAGAAACCTTAACATGTGCTATTAAGGCACAAGTTAACATGACCCTAAAATAAACTGTTACTAATAATGTCGGTTAGTACTATTTTTTTTTTCATAGCCATATATTACATACAAGTGTGCCTTTAAAGCACAATAATGGACTGATCTACCTATTAACATTACAATCCAATCATGTTTCTCCCTTACAAATTTCTAGATCAACCCTTTTACATATAACTTTGTTTCCAAACAGAAAAATTTAAGTTTTACAATTCCATATACCCAAAAGAATGCAGGTTCAGACTTCACCCTTTCCATGCTTTCATTTTGCGTGCGACATAAGTTAGTTTTCAGTGTTGGATCAATCAACCTAACTACTGGATAAAGTGAGATATTATTGATCCAATTGTGAAAAACAAACTTGTGTATATATAGTGCAAGGCTATCTTCTGCACATTAGAAAAAAACAATAATGTGACTTTGGAATGTTTTATCACTTGTTTGAAAACTGTAGTTAGTAGCACATGCGAGGGAGTGACTTTAGTATTAATGTAATATGAATTGATTTTTTATTTTGAACATACAAACTTGCTACTGTCTATAAAATATGACAAGGATAATTAGGGCATGTAATTGGTATAACCATTTTCTGAGACATTTAACCTTGGACTCATTTTGAATACAATCTCGTCATCAAACTCTCTAGCGCTAAAGATTACCTAATGTCTTGCCAATTAGCTGGATAGGTTTATTTTGCAACTCTGTTTCACCTAACTCTCTCCATATGTGGTGTATGGAAGCAACAAAATCAATGCGAAAAATATCAACAAAATGTTTAATTCTTCTGTTATAATGCCCATGAAAAAATTCAAATGATTTATTTTAACATGGTTAATTTTACAATTGATACTGATTTGAAGGCTGATGAAGTGAGAAAAGAAGTGAATTTATGGGCCGAAAAGAAGACAAAAGGGCTTATTCAAGATCTTCTTCCATGCGGGTCAGTTCACAGCTTAACGAGGCTAATCTTTGCAAATGCACTATACTTCAAAGGAGTGTGGGAACAACAGTTTGATACTTCGAAAACAAAGGACTATGATTTTGACCTTCTCAATGGAAAGTCAGTAAAGGTTCCCTTTATGACCAGCAAGAATAAACAGTTCGTCACTTCTTTTGATGGTTTTAAAGTCCTTGGTCTTCCTTATAAACAAGGCAAAGATGGGCGCGCGTTCTCTATTTACTTTTTTCTTCCAGATGCAAAAGAAGGGTTGTCAGCTTTGATTGATAAGGTAGCTTCTGATTCTGAGTTTTTGGAACACAATCTTCCTCGTAAAAAAGTGGAAGTAGGCAAGTTCCGGATTCCAAGATTCAATATTTCTTCTGAGATTGAAGCAACTGAGTTGCTCAAGAAATTAGGATTGACTTTACCTTTTTCTATGGGAGGTTTGACAAAAATGGTGGACTCTCCTATTAGTAAAGAACTTTATGTTTCCGGCATATTTCAGAAGTCTTTCATTGAAGTAAATGAAGAAGGTACGAAAGCTGCAGCGGTGACTGTTGGCATGGTAGGCGGGTGTGCTCCGTATAGACCCCCTCCGGTCCCTCCAATTGACTTTGTAGCTGACCACCCTTTTTTATTTCTGATCAGAGAAGATTTTAGTGGAACCATACTCTTTGTTGGAAAGGTGGTCAATCCTCTTGATGGGTGA

Protein sequence

>MS.gene010965.t1

MVMQNLIGKSFTNLTNVSMNITKHLLSNQNLKEKNVVFSPLSLNTVLSMIATGSEGPTQKQLLSFLQSESTGDLKSLCSQLVSSVLSGARTGGPCLSYVNGVWVEQTIPLQPSFKQLMTTDFKAAFAAVDFVNKADEVRKEVNLWAEKKTKGLIQDLLPCGSVHSLTRLIFANALYFKGVWEQQFDTSKTKDYDFDLLNGKSVKVPFMTSKNKQFVTSFDGFKVLGLPYKQGKDGRAFSIYFFLPDAKEGLSALIDKVASDSEFLEHNLPRKKVEVGKFRIPRFNISSEIEATELLKKLGLTLPFSMGGLTKMVDSPISKELYVSGIFQKSFIEVNEEGTKAAAVTVGMVGGCAPYRPPPVPPIDFVADHPFLFLIREDFSGTILFVGKVVNPLDG