Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010967.t1 | RHN45655.1 | 89.1 | 404 | 36 | 1 | 1 | 404 | 1 | 396 | 1.50E-200 | 708.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010967.t1 | Q9S7T8 | 49.6 | 401 | 185 | 6 | 6 | 402 | 3 | 390 | 1.0e-104 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010967.t1 | A0A396H3E8 | 89.1 | 404 | 36 | 1 | 1 | 404 | 1 | 396 | 1.1e-200 | 708.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010967 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene010967 | PPI |
| MS.gene010967 | MS.gene045585 | PPI |
| MS.gene065945 | MS.gene010967 | PPI |
| MS.gene031697 | MS.gene010967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010967.t1 | MTR_7g050750 | 87.624 | 404 | 42 | 1 | 1 | 404 | 1 | 396 | 0.0 | 693 |
| MS.gene010967.t1 | MTR_7g047780 | 87.376 | 404 | 43 | 1 | 1 | 404 | 7 | 402 | 0.0 | 674 |
| MS.gene010967.t1 | MTR_7g451890 | 85.891 | 404 | 49 | 1 | 1 | 404 | 7 | 402 | 0.0 | 672 |
| MS.gene010967.t1 | MTR_7g050810 | 84.080 | 402 | 56 | 1 | 3 | 404 | 11 | 404 | 0.0 | 660 |
| MS.gene010967.t1 | MTR_3g101180 | 64.444 | 405 | 130 | 3 | 4 | 402 | 2 | 398 | 0.0 | 511 |
| MS.gene010967.t1 | MTR_8g461160 | 63.500 | 400 | 138 | 1 | 4 | 403 | 2 | 393 | 1.45e-172 | 488 |
| MS.gene010967.t1 | MTR_4g045707 | 61.713 | 397 | 138 | 3 | 8 | 404 | 6 | 388 | 7.01e-171 | 483 |
| MS.gene010967.t1 | MTR_7g050830 | 76.636 | 321 | 50 | 3 | 3 | 310 | 11 | 319 | 1.39e-170 | 480 |
| MS.gene010967.t1 | MTR_3g101010 | 64.232 | 397 | 130 | 3 | 8 | 404 | 5 | 389 | 3.29e-169 | 479 |
| MS.gene010967.t1 | MTR_3g101130 | 61.307 | 398 | 139 | 4 | 8 | 404 | 6 | 389 | 1.10e-166 | 473 |
| MS.gene010967.t1 | MTR_3g018740 | 61.153 | 399 | 140 | 4 | 6 | 403 | 3 | 387 | 2.70e-165 | 469 |
| MS.gene010967.t1 | MTR_8g027395 | 58.647 | 399 | 149 | 3 | 6 | 404 | 15 | 397 | 6.67e-160 | 456 |
| MS.gene010967.t1 | MTR_3g101030 | 59.649 | 399 | 149 | 3 | 14 | 404 | 35 | 429 | 1.97e-158 | 453 |
| MS.gene010967.t1 | MTR_3g048000 | 57.975 | 395 | 133 | 6 | 9 | 402 | 28 | 390 | 6.03e-153 | 437 |
| MS.gene010967.t1 | MTR_4g088525 | 60.106 | 376 | 134 | 3 | 28 | 402 | 7 | 367 | 4.58e-151 | 432 |
| MS.gene010967.t1 | MTR_8g027420 | 55.639 | 399 | 150 | 4 | 6 | 404 | 4 | 375 | 1.71e-148 | 426 |
| MS.gene010967.t1 | MTR_2g046030 | 56.824 | 403 | 151 | 7 | 6 | 403 | 3 | 387 | 2.29e-146 | 421 |
| MS.gene010967.t1 | MTR_2g045980 | 56.576 | 403 | 152 | 7 | 6 | 403 | 3 | 387 | 8.87e-146 | 419 |
| MS.gene010967.t1 | MTR_3g101050 | 57.975 | 395 | 131 | 5 | 12 | 402 | 33 | 396 | 2.53e-143 | 414 |
| MS.gene010967.t1 | MTR_3g101200 | 55.473 | 402 | 142 | 7 | 2 | 402 | 25 | 390 | 3.74e-137 | 397 |
| MS.gene010967.t1 | MTR_4g088535 | 55.612 | 392 | 142 | 4 | 8 | 399 | 7 | 366 | 2.00e-135 | 393 |
| MS.gene010967.t1 | MTR_3g015620 | 53.218 | 404 | 151 | 7 | 3 | 403 | 11 | 379 | 1.56e-134 | 390 |
| MS.gene010967.t1 | MTR_3g101190 | 51.823 | 384 | 108 | 4 | 23 | 404 | 4 | 312 | 1.34e-126 | 368 |
| MS.gene010967.t1 | MTR_3g102920 | 52.393 | 397 | 133 | 7 | 12 | 402 | 62 | 408 | 7.85e-126 | 369 |
| MS.gene010967.t1 | MTR_3g100995 | 62.934 | 259 | 91 | 2 | 146 | 404 | 11 | 264 | 9.42e-113 | 331 |
| MS.gene010967.t1 | MTR_3g018747 | 61.977 | 263 | 82 | 4 | 142 | 403 | 9 | 254 | 8.71e-103 | 305 |
| MS.gene010967.t1 | MTR_3g100010 | 51.746 | 315 | 112 | 2 | 30 | 319 | 37 | 336 | 1.66e-102 | 308 |
| MS.gene010967.t1 | MTR_3g015760 | 63.218 | 261 | 88 | 4 | 145 | 403 | 26 | 280 | 2.89e-100 | 300 |
| MS.gene010967.t1 | MTR_3g111160 | 61.674 | 227 | 75 | 4 | 183 | 404 | 1 | 220 | 5.14e-82 | 251 |
| MS.gene010967.t1 | MTR_3g100520 | 60.714 | 224 | 71 | 5 | 183 | 404 | 1 | 209 | 1.06e-81 | 249 |
| MS.gene010967.t1 | MTR_3g114310 | 39.175 | 388 | 206 | 10 | 32 | 404 | 38 | 410 | 5.82e-79 | 249 |
| MS.gene010967.t1 | MTR_3g101110 | 56.067 | 239 | 77 | 3 | 142 | 378 | 68 | 280 | 2.05e-78 | 244 |
| MS.gene010967.t1 | MTR_3g099970 | 61.421 | 197 | 59 | 2 | 141 | 337 | 19 | 198 | 2.77e-76 | 235 |
| MS.gene010967.t1 | MTR_2g046410 | 57.143 | 210 | 80 | 3 | 199 | 403 | 144 | 348 | 2.56e-71 | 228 |
| MS.gene010967.t1 | MTR_3g101150 | 68.153 | 157 | 48 | 2 | 248 | 402 | 1 | 157 | 4.47e-68 | 213 |
| MS.gene010967.t1 | MTR_3g101020 | 53.439 | 189 | 59 | 2 | 216 | 404 | 1 | 160 | 5.36e-58 | 187 |
| MS.gene010967.t1 | MTR_3g102870 | 57.325 | 157 | 67 | 0 | 205 | 361 | 1 | 157 | 7.36e-56 | 182 |
| MS.gene010967.t1 | MTR_3g111150 | 50.802 | 187 | 58 | 4 | 10 | 196 | 1 | 153 | 2.28e-53 | 175 |
| MS.gene010967.t1 | MTR_3g100990 | 54.615 | 130 | 57 | 1 | 8 | 137 | 5 | 132 | 2.12e-36 | 139 |
| MS.gene010967.t1 | MTR_3g101140 | 47.573 | 103 | 53 | 1 | 302 | 404 | 15 | 116 | 3.70e-19 | 82.8 |
| MS.gene010967.t1 | MTR_4g093550 | 51.136 | 88 | 41 | 1 | 6 | 93 | 4 | 89 | 6.68e-18 | 78.6 |
| MS.gene010967.t1 | MTR_6g046890 | 55.224 | 67 | 30 | 0 | 25 | 91 | 14 | 80 | 9.94e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010967.t1 | AT1G47710 | 49.626 | 401 | 185 | 6 | 6 | 402 | 3 | 390 | 6.31e-133 | 387 |
| MS.gene010967.t1 | AT1G47710 | 49.626 | 401 | 185 | 6 | 6 | 402 | 30 | 417 | 8.76e-132 | 385 |
| MS.gene010967.t1 | AT2G26390 | 44.169 | 403 | 199 | 7 | 6 | 401 | 3 | 386 | 1.17e-111 | 333 |
| MS.gene010967.t1 | AT2G25240 | 45.000 | 400 | 196 | 9 | 6 | 401 | 3 | 382 | 1.36e-110 | 330 |
| MS.gene010967.t1 | AT3G45220 | 41.975 | 405 | 209 | 6 | 6 | 401 | 3 | 390 | 1.71e-107 | 322 |
| MS.gene010967.t1 | AT1G64030 | 44.612 | 399 | 188 | 6 | 6 | 401 | 3 | 371 | 2.17e-105 | 317 |
| MS.gene010967.t1 | AT1G62170 | 40.842 | 404 | 195 | 7 | 6 | 401 | 64 | 431 | 2.86e-98 | 300 |
| MS.gene010967.t1 | AT1G62170 | 38.695 | 429 | 202 | 7 | 6 | 401 | 64 | 464 | 3.28e-94 | 290 |
| MS.gene010967.t1 | AT2G14540 | 41.855 | 399 | 197 | 7 | 6 | 401 | 31 | 397 | 1.00e-93 | 287 |
| MS.gene010967.t1 | AT2G35580 | 43.243 | 370 | 173 | 8 | 38 | 401 | 33 | 371 | 9.68e-93 | 284 |
| MS.gene010967.t1 | AT1G64010 | 46.606 | 221 | 90 | 5 | 183 | 401 | 1 | 195 | 5.56e-62 | 199 |
| MS.gene010967.t1 | AT1G64010 | 46.602 | 206 | 82 | 5 | 198 | 401 | 2 | 181 | 9.50e-56 | 182 |
| MS.gene010967.t1 | AT1G63280 | 54.783 | 115 | 48 | 2 | 142 | 254 | 8 | 120 | 2.93e-34 | 124 |
| MS.gene010967.t1 | AT1G62160 | 44.022 | 184 | 72 | 4 | 222 | 401 | 62 | 218 | 5.73e-33 | 123 |
| MS.gene010967.t1 | AT1G51330 | 47.706 | 109 | 54 | 1 | 143 | 248 | 32 | 140 | 7.56e-24 | 98.2 |
| MS.gene010967.t1 | AT1G64020 | 34.545 | 110 | 69 | 3 | 16 | 124 | 13 | 120 | 2.30e-13 | 67.0 |
Find 87 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATAAACAAGGCAATTA+TGG | 0.132930 | 7.1:-51177659 | MS.gene010967:CDS |
| TGAGAAAAGAAGTGAATTTA+TGG | 0.175161 | 7.1:-51177928 | MS.gene010967:CDS |
| TTTGATGGTTTCAAAGTTCT+TGG | 0.183247 | 7.1:-51177686 | MS.gene010967:CDS |
| TCTGAGTTACTAAAGAAATT+AGG | 0.208566 | 7.1:-51177464 | MS.gene010967:CDS |
| AGTCAAGAACTTTATGTTTC+CGG | 0.215284 | 7.1:-51177386 | MS.gene010967:CDS |
| CCATAATTGCCTTGTTTATA+AGG | 0.246072 | 7.1:+51177659 | None:intergenic |
| ACATAAAGTTCTTGACTTAT+AGG | 0.247103 | 7.1:+51177392 | None:intergenic |
| GTCAAACCTCCCATAGAAAA+AGG | 0.264352 | 7.1:+51177431 | None:intergenic |
| ATCATTCTTGCTGGTCATAA+AGG | 0.270660 | 7.1:+51177724 | None:intergenic |
| CACTGTACTTCAAAGGAGTT+TGG | 0.286247 | 7.1:-51177820 | MS.gene010967:CDS |
| AAGAATGAATACTGATATTT+AGG | 0.287658 | 7.1:+51178570 | None:intergenic |
| CTTATAAACAAGGCAATTAT+GGG | 0.320101 | 7.1:-51177658 | MS.gene010967:CDS |
| CCTTGTTTGTCTTACGTCAA+TGG | 0.370650 | 7.1:-51178794 | MS.gene010967:CDS |
| AACCTTTCCAACGAAGAGTA+TGG | 0.371004 | 7.1:+51177193 | None:intergenic |
| AAGTGGAAGTAGGCAAGTTC+AGG | 0.371942 | 7.1:-51177523 | MS.gene010967:CDS |
| CTGATCAGAGAAGAGTTTAG+TGG | 0.389922 | 7.1:-51177218 | MS.gene010967:CDS |
| AGTAGTCATAATTTGTTTGA+AGG | 0.407530 | 7.1:+51178736 | None:intergenic |
| CGACCGCTTGCATAGGATTC+GGG | 0.417657 | 7.1:-51177307 | MS.gene010967:CDS |
| TATAAACTGATCATTCTTGC+TGG | 0.418692 | 7.1:+51177715 | None:intergenic |
| TCAAAAGAAATATTGAATCT+TGG | 0.427509 | 7.1:+51177497 | None:intergenic |
| TTTCTTCCATGCTCTCCGAC+GGG | 0.429401 | 7.1:-51178832 | MS.gene010967:CDS |
| TTTCTTCCCGATGCAAAAGA+TGG | 0.433517 | 7.1:-51177614 | MS.gene010967:CDS |
| GAGAAAAGAAGTGAATTTAT+GGG | 0.437617 | 7.1:-51177927 | MS.gene010967:CDS |
| AGTGAATTTATGGGCTGAAA+AGG | 0.440578 | 7.1:-51177918 | MS.gene010967:CDS |
| AGAAACAAGCTGCGAGCATA+AGG | 0.448672 | 7.1:+51178850 | None:intergenic |
| GCGACCGCTTGCATAGGATT+CGG | 0.451778 | 7.1:-51177308 | MS.gene010967:CDS |
| GTCTTACGTCAATGGTGTGT+GGG | 0.452356 | 7.1:-51178786 | MS.gene010967:CDS |
| GTTTCTTCCATGCTCTCCGA+CGG | 0.454419 | 7.1:-51178833 | MS.gene010967:CDS |
| GTCATAATTTGTTTGAAGGA+AGG | 0.461914 | 7.1:+51178740 | None:intergenic |
| AAGGTTGTCAATCCTCTTGA+TGG | 0.463069 | 7.1:-51177176 | MS.gene010967:CDS |
| AGCACGGTGTTGAGGGATAA+TGG | 0.464611 | 7.1:+51178959 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.465672 | 7.1:-51177347 | MS.gene010967:CDS |
| GTTACTAAAGAAATTAGGAT+TGG | 0.469377 | 7.1:-51177459 | MS.gene010967:CDS |
| CTCTCCGACGGGGTTCCCGC+TGG | 0.471501 | 7.1:-51178821 | MS.gene010967:CDS |
| TGGGCTGAAAAGGAGACAAA+AGG | 0.472940 | 7.1:-51177908 | MS.gene010967:CDS |
| TCATTCTTGCTGGTCATAAA+GGG | 0.472999 | 7.1:+51177725 | None:intergenic |
| AGAATGATGCAGAATCTCAT+TGG | 0.477650 | 7.1:-51179076 | MS.gene010967:CDS |
| TGTTCATGGAAACGTTGGTT+AGG | 0.481229 | 7.1:+51179038 | None:intergenic |
| GCAGCAGCGACCGCTTGCAT+AGG | 0.484458 | 7.1:-51177314 | MS.gene010967:CDS |
| CATACTGAGCACGGTGTTGA+GGG | 0.490148 | 7.1:+51178952 | None:intergenic |
| CTTGGTCTTCCTTATAAACA+AGG | 0.494378 | 7.1:-51177668 | MS.gene010967:CDS |
| CAATCTTCCTCGTAGAAAAG+TGG | 0.501434 | 7.1:-51177540 | MS.gene010967:CDS |
| GCATAAGGATTTGAGATCAC+GGG | 0.503825 | 7.1:+51178865 | None:intergenic |
| GACAAACAAGGGCCACCAGC+GGG | 0.518673 | 7.1:+51178806 | None:intergenic |
| TTCTTCCCGATGCAAAAGAT+GGG | 0.527099 | 7.1:-51177613 | MS.gene010967:CDS |
| TCCGACGGGGTTCCCGCTGG+TGG | 0.531705 | 7.1:-51178818 | MS.gene010967:CDS |
| AGTGGAACCATACTCTTCGT+TGG | 0.536877 | 7.1:-51177200 | MS.gene010967:CDS |
| GAAAGACTTCTGAAATATGC+CGG | 0.537794 | 7.1:+51177367 | None:intergenic |
| GGGCTGAAAAGGAGACAAAA+GGG | 0.540477 | 7.1:-51177907 | MS.gene010967:CDS |
| GGGAACCCCGTCGGAGAGCA+TGG | 0.545987 | 7.1:+51178826 | None:intergenic |
| TCATACTGAGCACGGTGTTG+AGG | 0.550826 | 7.1:+51178951 | None:intergenic |
| GCTAATGCACTGTACTTCAA+AGG | 0.554004 | 7.1:-51177827 | MS.gene010967:CDS |
| ATGATCGCTACCGGCTCTGA+GGG | 0.555039 | 7.1:-51178932 | MS.gene010967:CDS |
| AACCATACTCTTCGTTGGAA+AGG | 0.555613 | 7.1:-51177195 | MS.gene010967:CDS |
| TCTGAATGGCAAGTCAGTAA+AGG | 0.555621 | 7.1:-51177750 | MS.gene010967:CDS |
| GCTACAAAGTCGACTGGAGG+GGG | 0.556544 | 7.1:+51177260 | None:intergenic |
| TGGTCAGCTACAAAGTCGAC+TGG | 0.564886 | 7.1:+51177254 | None:intergenic |
| TGTCTTACGTCAATGGTGTG+TGG | 0.569784 | 7.1:-51178787 | MS.gene010967:CDS |
| TGCATTAGCAAAGATGAGGC+TGG | 0.571965 | 7.1:+51177841 | None:intergenic |
| TATGATCGCTACCGGCTCTG+AGG | 0.572486 | 7.1:-51178933 | MS.gene010967:CDS |
| TTGAGTGGGACCCTCAGAGC+CGG | 0.573011 | 7.1:+51178922 | None:intergenic |
| TTCTTCCATGCTCTCCGACG+GGG | 0.577736 | 7.1:-51178831 | MS.gene010967:CDS |
| AGCATAAGGATTTGAGATCA+CGG | 0.579235 | 7.1:+51178864 | None:intergenic |
| CCTCGTAGAAAAGTGGAAGT+AGG | 0.580409 | 7.1:-51177533 | MS.gene010967:CDS |
| TTACTGACTTGCCATTCAGA+AGG | 0.585444 | 7.1:+51177753 | None:intergenic |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.586043 | 7.1:+51178749 | None:intergenic |
| CAGCTACAAAGTCGACTGGA+GGG | 0.589101 | 7.1:+51177258 | None:intergenic |
| AGCTACAAAGTCGACTGGAG+GGG | 0.590370 | 7.1:+51177259 | None:intergenic |
| AGGTTGTCAATCCTCTTGAT+GGG | 0.591371 | 7.1:-51177175 | MS.gene010967:CDS |
| GCCACCAGCGGGAACCCCGT+CGG | 0.597470 | 7.1:+51178817 | None:intergenic |
| TGAAGTTGATTTCCTTAACA+AGG | 0.607000 | 7.1:-51178693 | MS.gene010967:intron |
| ATGTAAGTTAGGGTATAAAG+TGG | 0.613619 | 7.1:-51178593 | MS.gene010967:intron |
| TGCAACAATCACCCATCAAG+AGG | 0.616140 | 7.1:+51177164 | None:intergenic |
| CATAAGGATTTGAGATCACG+GGG | 0.617292 | 7.1:+51178866 | None:intergenic |
| GTGCTCAGTATGATCGCTAC+CGG | 0.620442 | 7.1:-51178941 | MS.gene010967:CDS |
| TGTGATGTTCATGGAAACGT+TGG | 0.621161 | 7.1:+51179033 | None:intergenic |
| ACAGTGCATTAGCAAAGATG+AGG | 0.658599 | 7.1:+51177837 | None:intergenic |
| CCATTGACGTAAGACAAACA+AGG | 0.660793 | 7.1:+51178794 | None:intergenic |
| ATAAAAGATCTTGTTCCACA+CGG | 0.662266 | 7.1:-51177881 | MS.gene010967:CDS |
| TAAGGATTTGAGATCACGGG+GGG | 0.667654 | 7.1:+51178868 | None:intergenic |
| AGACAAACAAGGGCCACCAG+CGG | 0.668138 | 7.1:+51178805 | None:intergenic |
| TCAGCTACAAAGTCGACTGG+AGG | 0.668532 | 7.1:+51177257 | None:intergenic |
| ACACCCGAATCCTATGCAAG+CGG | 0.684511 | 7.1:+51177304 | None:intergenic |
| CATTGACGTAAGACAAACAA+GGG | 0.685941 | 7.1:+51178795 | None:intergenic |
| GGTAGCGATCATACTGAGCA+CGG | 0.692951 | 7.1:+51178943 | None:intergenic |
| AATCTGTCAACTGAGCCGTG+TGG | 0.756617 | 7.1:+51177866 | None:intergenic |
| ATAAGGATTTGAGATCACGG+GGG | 0.805342 | 7.1:+51178867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAACAAATTAATATATAA+AGG | + | chr7.1:51177869-51177888 | None:intergenic | 10.0% |
| !!! | AAAAATTAAATTTTGTTTGA+AGG | + | chr7.1:51177918-51177937 | None:intergenic | 10.0% |
| !! | ATAAAATACTAATAAAAGCA+TGG | + | chr7.1:51177615-51177634 | None:intergenic | 15.0% |
| !! | ATAAATTGTTACTAATAATG+TGG | - | chr7.1:51177714-51177733 | MS.gene010967:CDS | 15.0% |
| !! | TAAATTGTTACTAATAATGT+GGG | - | chr7.1:51177715-51177734 | MS.gene010967:CDS | 15.0% |
| !!! | TATATTAATTTGTTTTGACA+CGG | - | chr7.1:51177872-51177891 | MS.gene010967:CDS | 15.0% |
| !!! | TCAAATGATTTATTTTAACA+TGG | - | chr7.1:51178268-51178287 | MS.gene010967:intron | 15.0% |
| !! | AAGAATGAATACTGATATTT+AGG | + | chr7.1:51177678-51177697 | None:intergenic | 20.0% |
| !! | TATTATTCAAAATGAGTCAA+AGG | + | chr7.1:51178203-51178222 | None:intergenic | 20.0% |
| !! | TCAAAAGAAATATTGAATCT+TGG | + | chr7.1:51178751-51178770 | None:intergenic | 20.0% |
| !! | TGTTAATTACATGTAAGTTA+GGG | - | chr7.1:51177642-51177661 | MS.gene010967:CDS | 20.0% |
| !! | TTGTTAATTACATGTAAGTT+AGG | - | chr7.1:51177641-51177660 | MS.gene010967:CDS | 20.0% |
| !!! | AACATGGTTAATTTTACAAA+AGG | - | chr7.1:51178284-51178303 | MS.gene010967:intron | 20.0% |
| !!! | ACATGGTTAATTTTACAAAA+GGG | - | chr7.1:51178285-51178304 | MS.gene010967:intron | 20.0% |
| ! | ACATAAAGTTCTTGACTTAT+AGG | + | chr7.1:51178856-51178875 | None:intergenic | 25.0% |
| ! | ATATGACAACAAGCATAATT+TGG | - | chr7.1:51178146-51178165 | MS.gene010967:intron | 25.0% |
| ! | CTCTGATCAGAAATAAAAAA+GGG | + | chr7.1:51179017-51179036 | None:intergenic | 25.0% |
| ! | CTTATAAACAAGGCAATTAT+GGG | - | chr7.1:51178587-51178606 | MS.gene010967:intron | 25.0% |
| ! | GAGAAAAGAAGTGAATTTAT+GGG | - | chr7.1:51178318-51178337 | MS.gene010967:intron | 25.0% |
| ! | GTTACTAAAGAAATTAGGAT+TGG | - | chr7.1:51178786-51178805 | MS.gene010967:CDS | 25.0% |
| ! | TATGACAACAAGCATAATTT+GGG | - | chr7.1:51178147-51178166 | MS.gene010967:intron | 25.0% |
| ! | TCTCTGATCAGAAATAAAAA+AGG | + | chr7.1:51179018-51179037 | None:intergenic | 25.0% |
| ! | TCTGAGTTACTAAAGAAATT+AGG | - | chr7.1:51178781-51178800 | MS.gene010967:CDS | 25.0% |
| ! | TGAGAAAAGAAGTGAATTTA+TGG | - | chr7.1:51178317-51178336 | MS.gene010967:intron | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | - | chr7.1:51178898-51178917 | MS.gene010967:CDS | 25.0% |
| !! | CAGTTTATAAGTTCTTTTGA+TGG | - | chr7.1:51178544-51178563 | MS.gene010967:intron | 25.0% |
| !!! | AGTAGTCATAATTTGTTTGA+AGG | + | chr7.1:51177512-51177531 | None:intergenic | 25.0% |
| !!! | ATTTTTTCATAAGCAGATTG+AGG | - | chr7.1:51177746-51177765 | MS.gene010967:CDS | 25.0% |
| !!! | TTCGTTTTTGAAGTATCAAA+CGG | + | chr7.1:51178457-51178476 | None:intergenic | 25.0% |
| !!! | TTTTTTCATAAGCAGATTGA+GGG | - | chr7.1:51177747-51177766 | MS.gene010967:CDS | 25.0% |
| AATTGGTGAAAACTAACTTG+TGG | + | chr7.1:51178001-51178020 | None:intergenic | 30.0% | |
| AGTCAAGAACTTTATGTTTC+CGG | - | chr7.1:51178859-51178878 | MS.gene010967:CDS | 30.0% | |
| ATAAAAGATCTTGTTCCACA+CGG | - | chr7.1:51178364-51178383 | MS.gene010967:intron | 30.0% | |
| ATCGGGAAGAAAAAAGTAAA+TGG | + | chr7.1:51178623-51178642 | None:intergenic | 30.0% | |
| ATGTAAGTTAGGGTATAAAG+TGG | - | chr7.1:51177652-51177671 | MS.gene010967:CDS | 30.0% | |
| CATATCTCATTTGATCCAAT+TGG | + | chr7.1:51178018-51178037 | None:intergenic | 30.0% | |
| CCTTATAAACAAGGCAATTA+TGG | - | chr7.1:51178586-51178605 | MS.gene010967:intron | 30.0% | |
| CTTACATGTAATTGTACTAC+AGG | + | chr7.1:51177790-51177809 | None:intergenic | 30.0% | |
| GTTTGATACTTCAAAAACGA+AGG | - | chr7.1:51178456-51178475 | MS.gene010967:intron | 30.0% | |
| TATAAACTGATCATTCTTGC+TGG | + | chr7.1:51178533-51178552 | None:intergenic | 30.0% | |
| TGATCAGAAATAAAAAAGGG+TGG | + | chr7.1:51179014-51179033 | None:intergenic | 30.0% | |
| ! | CTTTTCTCGAAGTTTTTGAT+TGG | + | chr7.1:51177251-51177270 | None:intergenic | 30.0% |
| ! | TGAAGTTGATTTCCTTAACA+AGG | - | chr7.1:51177552-51177571 | MS.gene010967:CDS | 30.0% |
| ! | TTTGATGGTTTCAAAGTTCT+TGG | - | chr7.1:51178559-51178578 | MS.gene010967:intron | 30.0% |
| !! | AGAAAAAGAGTACCTTGTTA+AGG | + | chr7.1:51177567-51177586 | None:intergenic | 30.0% |
| !! | CATGAGTTGATTGTGTTTAA+AGG | + | chr7.1:51177817-51177836 | None:intergenic | 30.0% |
| !! | CCATAATTGCCTTGTTTATA+AGG | + | chr7.1:51178589-51178608 | None:intergenic | 30.0% |
| !! | GTCATAATTTGTTTGAAGGA+AGG | + | chr7.1:51177508-51177527 | None:intergenic | 30.0% |
| !! | TATGATTTTGACCTTCTGAA+TGG | - | chr7.1:51178481-51178500 | MS.gene010967:intron | 30.0% |
| !!! | ACAAGTTAGTTTTCACCAAT+TGG | - | chr7.1:51178000-51178019 | MS.gene010967:intron | 30.0% |
| !!! | ATTGGCTTTACCTTTTTCTA+TGG | - | chr7.1:51178804-51178823 | MS.gene010967:CDS | 30.0% |
| !!! | TTGGCTTTACCTTTTTCTAT+GGG | - | chr7.1:51178805-51178824 | MS.gene010967:CDS | 30.0% |
| AGTGATCTAGCTATTTGGAA+AGG | + | chr7.1:51177845-51177864 | None:intergenic | 35.0% | |
| ATCATTCTTGCTGGTCATAA+AGG | + | chr7.1:51178524-51178543 | None:intergenic | 35.0% | |
| CATTGACGTAAGACAAACAA+GGG | + | chr7.1:51177453-51177472 | None:intergenic | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | - | chr7.1:51178822-51178841 | MS.gene010967:CDS | 35.0% | |
| TCACAGAGAATCGTTATTAC+TGG | + | chr7.1:51178173-51178192 | None:intergenic | 35.0% | |
| TCATTCTTGCTGGTCATAAA+GGG | + | chr7.1:51178523-51178542 | None:intergenic | 35.0% | |
| ! | ACTAATAAAAGCATGGCACA+TGG | + | chr7.1:51177608-51177627 | None:intergenic | 35.0% |
| ! | AGCATAAGGATTTGAGATCA+CGG | + | chr7.1:51177384-51177403 | None:intergenic | 35.0% |
| ! | AGCTTCTGATTCTGAGTTTT+TGG | - | chr7.1:51178678-51178697 | MS.gene010967:intron | 35.0% |
| ! | AGTGAATTTATGGGCTGAAA+AGG | - | chr7.1:51178327-51178346 | MS.gene010967:intron | 35.0% |
| ! | CAAGTGTTTTGTGATGTTCA+TGG | + | chr7.1:51177224-51177243 | None:intergenic | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | - | chr7.1:51178577-51178596 | MS.gene010967:intron | 35.0% |
| !! | CTGGTTTTTGTGTTGGTATA+TGG | + | chr7.1:51177947-51177966 | None:intergenic | 35.0% |
| !! | GAAAGACTTCTGAAATATGC+CGG | + | chr7.1:51178881-51178900 | None:intergenic | 35.0% |
| !!! | GAGAGAAGTTGTTTTTGAGT+GGG | + | chr7.1:51177340-51177359 | None:intergenic | 35.0% |
| AACCATACTCTTCGTTGGAA+AGG | - | chr7.1:51179050-51179069 | MS.gene010967:CDS | 40.0% | |
| AACCTTTCCAACGAAGAGTA+TGG | + | chr7.1:51179055-51179074 | None:intergenic | 40.0% | |
| AAGGGAGTGATCTAGCTATT+TGG | + | chr7.1:51177850-51177869 | None:intergenic | 40.0% | |
| AAGGTTGTCAATCCTCTTGA+TGG | - | chr7.1:51179069-51179088 | MS.gene010967:CDS | 40.0% | |
| ACAGTGCATTAGCAAAGATG+AGG | + | chr7.1:51178411-51178430 | None:intergenic | 40.0% | |
| AGGTTGTCAATCCTCTTGAT+GGG | - | chr7.1:51179070-51179089 | MS.gene010967:CDS | 40.0% | |
| ATACCAACACAAAAACCAGC+AGG | - | chr7.1:51177948-51177967 | MS.gene010967:intron | 40.0% | |
| CAAGACCTACACATAATGCA+AGG | - | chr7.1:51178039-51178058 | MS.gene010967:intron | 40.0% | |
| CAATCTTCCTCGTAGAAAAG+TGG | - | chr7.1:51178705-51178724 | MS.gene010967:CDS | 40.0% | |
| CACATAATGCAAGGCTATCT+TGG | - | chr7.1:51178048-51178067 | MS.gene010967:intron | 40.0% | |
| CACTGTACTTCAAAGGAGTT+TGG | - | chr7.1:51178425-51178444 | MS.gene010967:intron | 40.0% | |
| CCATTGACGTAAGACAAACA+AGG | + | chr7.1:51177454-51177473 | None:intergenic | 40.0% | |
| CTGATCAGAGAAGAGTTTAG+TGG | - | chr7.1:51179027-51179046 | MS.gene010967:CDS | 40.0% | |
| GCTAATGCACTGTACTTCAA+AGG | - | chr7.1:51178418-51178437 | MS.gene010967:intron | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | + | chr7.1:51178817-51178836 | None:intergenic | 40.0% | |
| TAAGCAGATTGAGGGATAAG+AGG | - | chr7.1:51177755-51177774 | MS.gene010967:CDS | 40.0% | |
| TAATGCAAGGCTATCTTGGA+AGG | - | chr7.1:51178052-51178071 | MS.gene010967:intron | 40.0% | |
| TCTGAATGGCAAGTCAGTAA+AGG | - | chr7.1:51178495-51178514 | MS.gene010967:intron | 40.0% | |
| TGTGATGTTCATGGAAACGT+TGG | + | chr7.1:51177215-51177234 | None:intergenic | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | + | chr7.1:51177499-51177518 | None:intergenic | 40.0% | |
| TTCTTCCCGATGCAAAAGAT+GGG | - | chr7.1:51178632-51178651 | MS.gene010967:intron | 40.0% | |
| TTTCTTCCCGATGCAAAAGA+TGG | - | chr7.1:51178631-51178650 | MS.gene010967:intron | 40.0% | |
| ! | ATAAGGATTTGAGATCACGG+GGG | + | chr7.1:51177381-51177400 | None:intergenic | 40.0% |
| ! | CATAAGGATTTGAGATCACG+GGG | + | chr7.1:51177382-51177401 | None:intergenic | 40.0% |
| ! | CCTTGTTTGTCTTACGTCAA+TGG | - | chr7.1:51177451-51177470 | MS.gene010967:CDS | 40.0% |
| ! | GATAGCCTTGCATTATGTGT+AGG | + | chr7.1:51178047-51178066 | None:intergenic | 40.0% |
| ! | GCATAAGGATTTGAGATCAC+GGG | + | chr7.1:51177383-51177402 | None:intergenic | 40.0% |
| ! | GCTTTACCTTTTTCTATGGG+AGG | - | chr7.1:51178808-51178827 | MS.gene010967:CDS | 40.0% |
| ! | TGACAACCCATCTTTTGCAT+CGG | + | chr7.1:51178641-51178660 | None:intergenic | 40.0% |
| ! | TGTTCATGGAAACGTTGGTT+AGG | + | chr7.1:51177210-51177229 | None:intergenic | 40.0% |
| !! | TTACTGACTTGCCATTCAGA+AGG | + | chr7.1:51178495-51178514 | None:intergenic | 40.0% |
| !! | TTATTTTTCACGCAACCTGC+TGG | + | chr7.1:51177966-51177985 | None:intergenic | 40.0% |
| !!! | GGAGAGAAGTTGTTTTTGAG+TGG | + | chr7.1:51177341-51177360 | None:intergenic | 40.0% |
| AAGTGGAAGTAGGCAAGTTC+AGG | - | chr7.1:51178722-51178741 | MS.gene010967:CDS | 45.0% | |
| AGAAACAAGCTGCGAGCATA+AGG | + | chr7.1:51177398-51177417 | None:intergenic | 45.0% | |
| AGTGGAACCATACTCTTCGT+TGG | - | chr7.1:51179045-51179064 | MS.gene010967:CDS | 45.0% | |
| CCTCGTAGAAAAGTGGAAGT+AGG | - | chr7.1:51178712-51178731 | MS.gene010967:CDS | 45.0% | |
| GGGAGGTTTGACAAAAATGG+TGG | - | chr7.1:51178825-51178844 | MS.gene010967:CDS | 45.0% | |
| GGGCTGAAAAGGAGACAAAA+GGG | - | chr7.1:51178338-51178357 | MS.gene010967:intron | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | - | chr7.1:51177459-51177478 | MS.gene010967:CDS | 45.0% | |
| TGCATTAGCAAAGATGAGGC+TGG | + | chr7.1:51178407-51178426 | None:intergenic | 45.0% | |
| TGGGCTGAAAAGGAGACAAA+AGG | - | chr7.1:51178337-51178356 | MS.gene010967:intron | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | - | chr7.1:51177458-51177477 | MS.gene010967:CDS | 45.0% | |
| ! | GACAACCCATCTTTTGCATC+GGG | + | chr7.1:51178640-51178659 | None:intergenic | 45.0% |
| ! | TAAGGATTTGAGATCACGGG+GGG | + | chr7.1:51177380-51177399 | None:intergenic | 45.0% |
| !! | CCTACTTCCACTTTTCTACG+AGG | + | chr7.1:51178715-51178734 | None:intergenic | 45.0% |
| !!! | CAACCTGCTGGTTTTTGTGT+TGG | + | chr7.1:51177954-51177973 | None:intergenic | 45.0% |
| !! | AAAACAAATTAATATATAAA+GGG | + | chr7.1:51177868-51177887 | None:intergenic | 5.0% |
| AATCTGTCAACTGAGCCGTG+TGG | + | chr7.1:51178382-51178401 | None:intergenic | 50.0% | |
| ACACCCGAATCCTATGCAAG+CGG | + | chr7.1:51178944-51178963 | None:intergenic | 50.0% | |
| AGCTACAAAGTCGACTGGAG+GGG | + | chr7.1:51178989-51179008 | None:intergenic | 50.0% | |
| CAGCTACAAAGTCGACTGGA+GGG | + | chr7.1:51178990-51179009 | None:intergenic | 50.0% | |
| GGTAGCGATCATACTGAGCA+CGG | + | chr7.1:51177305-51177324 | None:intergenic | 50.0% | |
| GTGCTCAGTATGATCGCTAC+CGG | - | chr7.1:51177304-51177323 | MS.gene010967:CDS | 50.0% | |
| GTTTCTTCCATGCTCTCCGA+CGG | - | chr7.1:51177412-51177431 | MS.gene010967:CDS | 50.0% | |
| TCAGCTACAAAGTCGACTGG+AGG | + | chr7.1:51178991-51179010 | None:intergenic | 50.0% | |
| TGGTCAGCTACAAAGTCGAC+TGG | + | chr7.1:51178994-51179013 | None:intergenic | 50.0% | |
| TTTCTTCCATGCTCTCCGAC+GGG | - | chr7.1:51177413-51177432 | MS.gene010967:CDS | 50.0% | |
| ! | AGCACGGTGTTGAGGGATAA+TGG | + | chr7.1:51177289-51177308 | None:intergenic | 50.0% |
| ! | CATACTGAGCACGGTGTTGA+GGG | + | chr7.1:51177296-51177315 | None:intergenic | 50.0% |
| ! | TCATACTGAGCACGGTGTTG+AGG | + | chr7.1:51177297-51177316 | None:intergenic | 50.0% |
| AGACAAACAAGGGCCACCAG+CGG | + | chr7.1:51177443-51177462 | None:intergenic | 55.0% | |
| CGACCGCTTGCATAGGATTC+GGG | - | chr7.1:51178938-51178957 | MS.gene010967:CDS | 55.0% | |
| GCGACCGCTTGCATAGGATT+CGG | - | chr7.1:51178937-51178956 | MS.gene010967:CDS | 55.0% | |
| GCTACAAAGTCGACTGGAGG+GGG | + | chr7.1:51178988-51179007 | None:intergenic | 55.0% | |
| TTCTTCCATGCTCTCCGACG+GGG | - | chr7.1:51177414-51177433 | MS.gene010967:CDS | 55.0% | |
| !! | ATGATCGCTACCGGCTCTGA+GGG | - | chr7.1:51177313-51177332 | MS.gene010967:CDS | 55.0% |
| !! | TATGATCGCTACCGGCTCTG+AGG | - | chr7.1:51177312-51177331 | MS.gene010967:CDS | 55.0% |
| ACAAAGTCGACTGGAGGGGG+CGG | + | chr7.1:51178985-51179004 | None:intergenic | 60.0% | |
| GACAAACAAGGGCCACCAGC+GGG | + | chr7.1:51177442-51177461 | None:intergenic | 60.0% | |
| GATCACGGGGGGATTCAGAC+TGG | + | chr7.1:51177369-51177388 | None:intergenic | 60.0% | |
| GGGGGATTCAGACTGGAGGA+AGG | + | chr7.1:51177362-51177381 | None:intergenic | 60.0% | |
| TTGAGTGGGACCCTCAGAGC+CGG | + | chr7.1:51177326-51177345 | None:intergenic | 60.0% | |
| CACGGGGGGATTCAGACTGG+AGG | + | chr7.1:51177366-51177385 | None:intergenic | 65.0% | |
| GCAGCAGCGACCGCTTGCAT+AGG | - | chr7.1:51178931-51178950 | MS.gene010967:CDS | 65.0% | |
| AAGTCGACTGGAGGGGGCGG+AGG | + | chr7.1:51178982-51179001 | None:intergenic | 70.0% | |
| AGTCGACTGGAGGGGGCGGA+GGG | + | chr7.1:51178981-51179000 | None:intergenic | 70.0% | |
| GGGAACCCCGTCGGAGAGCA+TGG | + | chr7.1:51177422-51177441 | None:intergenic | 70.0% | |
| GGGGGCGGAGGGGGTCTATA+CGG | + | chr7.1:51178970-51178989 | None:intergenic | 70.0% | |
| CTCTCCGACGGGGTTCCCGC+TGG | - | chr7.1:51177424-51177443 | MS.gene010967:CDS | 75.0% | |
| GCCACCAGCGGGAACCCCGT+CGG | + | chr7.1:51177431-51177450 | None:intergenic | 75.0% | |
| GTCGACTGGAGGGGGCGGAG+GGG | + | chr7.1:51178980-51178999 | None:intergenic | 75.0% | |
| TCCGACGGGGTTCCCGCTGG+TGG | - | chr7.1:51177427-51177446 | MS.gene010967:CDS | 75.0% | |
| TCGACTGGAGGGGGCGGAGG+GGG | + | chr7.1:51178979-51178998 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 51177172 | 51179095 | 51177172 | ID=MS.gene010967 |
| chr7.1 | mRNA | 51177172 | 51179095 | 51177172 | ID=MS.gene010967.t1;Parent=MS.gene010967 |
| chr7.1 | exon | 51178694 | 51179095 | 51178694 | ID=MS.gene010967.t1.exon1;Parent=MS.gene010967.t1 |
| chr7.1 | CDS | 51178694 | 51179095 | 51178694 | ID=cds.MS.gene010967.t1;Parent=MS.gene010967.t1 |
| chr7.1 | exon | 51178582 | 51178604 | 51178582 | ID=MS.gene010967.t1.exon2;Parent=MS.gene010967.t1 |
| chr7.1 | CDS | 51178582 | 51178604 | 51178582 | ID=cds.MS.gene010967.t1;Parent=MS.gene010967.t1 |
| chr7.1 | exon | 51177172 | 51177961 | 51177172 | ID=MS.gene010967.t1.exon3;Parent=MS.gene010967.t1 |
| chr7.1 | CDS | 51177172 | 51177961 | 51177172 | ID=cds.MS.gene010967.t1;Parent=MS.gene010967.t1 |
| Gene Sequence |
| Protein sequence |
