Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010971.t1 | XP_013448414.1 | 88.1 | 396 | 46 | 1 | 1 | 395 | 7 | 402 | 3.10E-195 | 691 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010971.t1 | Q9S7T8 | 51.9 | 391 | 182 | 5 | 6 | 393 | 3 | 390 | 1.8e-106 | 387.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010971.t1 | A0A072TZ50 | 88.1 | 396 | 46 | 1 | 1 | 395 | 7 | 402 | 2.3e-195 | 691.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010971 | MS.gene006610 | PPI |
| MS.gene010971 | MS.gene031697 | PPI |
| MS.gene010971 | MS.gene065945 | PPI |
| MS.gene010971 | MS.gene045585 | PPI |
| MS.gene010971 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010971.t1 | MTR_7g050750 | 88.889 | 396 | 43 | 1 | 1 | 395 | 1 | 396 | 0.0 | 692 |
| MS.gene010971.t1 | MTR_7g451890 | 87.374 | 396 | 49 | 1 | 1 | 395 | 7 | 402 | 0.0 | 679 |
| MS.gene010971.t1 | MTR_7g047780 | 88.131 | 396 | 46 | 1 | 1 | 395 | 7 | 402 | 0.0 | 676 |
| MS.gene010971.t1 | MTR_7g050810 | 85.279 | 394 | 57 | 1 | 3 | 395 | 11 | 404 | 0.0 | 656 |
| MS.gene010971.t1 | MTR_3g101180 | 65.140 | 393 | 130 | 3 | 8 | 393 | 6 | 398 | 3.51e-179 | 504 |
| MS.gene010971.t1 | MTR_8g461160 | 64.796 | 392 | 137 | 1 | 4 | 394 | 2 | 393 | 2.61e-173 | 489 |
| MS.gene010971.t1 | MTR_3g101130 | 63.131 | 396 | 137 | 5 | 2 | 395 | 1 | 389 | 3.60e-170 | 481 |
| MS.gene010971.t1 | MTR_4g045707 | 61.735 | 392 | 139 | 4 | 7 | 395 | 5 | 388 | 5.11e-168 | 475 |
| MS.gene010971.t1 | MTR_3g101010 | 63.171 | 391 | 139 | 3 | 6 | 395 | 3 | 389 | 1.56e-167 | 474 |
| MS.gene010971.t1 | MTR_7g050830 | 76.489 | 319 | 43 | 3 | 3 | 300 | 11 | 318 | 4.87e-167 | 471 |
| MS.gene010971.t1 | MTR_3g018740 | 62.404 | 391 | 139 | 4 | 6 | 394 | 3 | 387 | 3.74e-166 | 471 |
| MS.gene010971.t1 | MTR_8g027395 | 60.204 | 392 | 147 | 3 | 5 | 395 | 14 | 397 | 5.72e-162 | 460 |
| MS.gene010971.t1 | MTR_3g101030 | 57.320 | 403 | 143 | 6 | 14 | 395 | 35 | 429 | 4.63e-151 | 434 |
| MS.gene010971.t1 | MTR_4g088525 | 60.215 | 372 | 131 | 3 | 28 | 393 | 7 | 367 | 9.49e-151 | 431 |
| MS.gene010971.t1 | MTR_3g048000 | 57.841 | 389 | 134 | 6 | 9 | 393 | 28 | 390 | 4.38e-150 | 430 |
| MS.gene010971.t1 | MTR_8g027420 | 56.888 | 392 | 149 | 4 | 5 | 395 | 3 | 375 | 3.24e-149 | 427 |
| MS.gene010971.t1 | MTR_2g045980 | 56.345 | 394 | 158 | 5 | 6 | 394 | 3 | 387 | 1.72e-145 | 418 |
| MS.gene010971.t1 | MTR_2g046030 | 56.091 | 394 | 159 | 5 | 6 | 394 | 3 | 387 | 4.80e-145 | 417 |
| MS.gene010971.t1 | MTR_3g101050 | 56.848 | 387 | 139 | 5 | 12 | 393 | 33 | 396 | 3.08e-139 | 403 |
| MS.gene010971.t1 | MTR_3g101200 | 55.725 | 393 | 146 | 6 | 2 | 393 | 25 | 390 | 2.71e-138 | 400 |
| MS.gene010971.t1 | MTR_4g088535 | 55.641 | 390 | 148 | 4 | 2 | 390 | 1 | 366 | 1.18e-136 | 395 |
| MS.gene010971.t1 | MTR_3g015620 | 55.867 | 392 | 144 | 6 | 6 | 394 | 14 | 379 | 9.81e-135 | 390 |
| MS.gene010971.t1 | MTR_3g101190 | 54.011 | 374 | 106 | 4 | 23 | 395 | 4 | 312 | 1.74e-128 | 372 |
| MS.gene010971.t1 | MTR_3g102920 | 51.671 | 389 | 139 | 6 | 12 | 393 | 62 | 408 | 1.37e-124 | 366 |
| MS.gene010971.t1 | MTR_3g100995 | 61.719 | 256 | 93 | 2 | 140 | 395 | 14 | 264 | 3.46e-111 | 326 |
| MS.gene010971.t1 | MTR_3g018747 | 59.696 | 263 | 88 | 4 | 133 | 394 | 9 | 254 | 1.85e-99 | 296 |
| MS.gene010971.t1 | MTR_3g100010 | 50.794 | 315 | 106 | 3 | 30 | 310 | 37 | 336 | 6.77e-98 | 295 |
| MS.gene010971.t1 | MTR_3g015760 | 61.132 | 265 | 93 | 4 | 133 | 394 | 23 | 280 | 1.93e-97 | 292 |
| MS.gene010971.t1 | MTR_3g114310 | 40.000 | 380 | 205 | 10 | 32 | 395 | 38 | 410 | 6.12e-82 | 257 |
| MS.gene010971.t1 | MTR_3g111160 | 59.735 | 226 | 81 | 4 | 174 | 395 | 1 | 220 | 2.73e-81 | 248 |
| MS.gene010971.t1 | MTR_3g100520 | 58.482 | 224 | 76 | 3 | 174 | 395 | 1 | 209 | 2.92e-81 | 248 |
| MS.gene010971.t1 | MTR_3g101110 | 56.356 | 236 | 75 | 3 | 136 | 369 | 71 | 280 | 4.24e-78 | 243 |
| MS.gene010971.t1 | MTR_3g099970 | 59.184 | 196 | 63 | 2 | 133 | 328 | 20 | 198 | 2.95e-73 | 227 |
| MS.gene010971.t1 | MTR_2g046410 | 53.953 | 215 | 89 | 3 | 185 | 394 | 139 | 348 | 1.26e-69 | 223 |
| MS.gene010971.t1 | MTR_3g101150 | 65.190 | 158 | 51 | 2 | 239 | 393 | 1 | 157 | 7.42e-66 | 207 |
| MS.gene010971.t1 | MTR_3g101020 | 51.852 | 189 | 62 | 2 | 207 | 395 | 1 | 160 | 9.27e-59 | 189 |
| MS.gene010971.t1 | MTR_3g102870 | 54.777 | 157 | 71 | 0 | 196 | 352 | 1 | 157 | 2.28e-55 | 180 |
| MS.gene010971.t1 | MTR_3g111150 | 52.809 | 178 | 59 | 3 | 10 | 187 | 1 | 153 | 8.54e-55 | 179 |
| MS.gene010971.t1 | MTR_3g100990 | 57.812 | 128 | 51 | 2 | 7 | 133 | 4 | 129 | 3.84e-36 | 138 |
| MS.gene010971.t1 | MTR_3g101140 | 47.619 | 105 | 54 | 1 | 291 | 395 | 13 | 116 | 1.40e-21 | 89.7 |
| MS.gene010971.t1 | MTR_4g093550 | 49.425 | 87 | 42 | 1 | 6 | 92 | 4 | 88 | 1.44e-15 | 72.0 |
| MS.gene010971.t1 | MTR_6g046890 | 56.250 | 64 | 28 | 0 | 25 | 88 | 14 | 77 | 4.47e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010971.t1 | AT1G47710 | 51.918 | 391 | 182 | 5 | 6 | 393 | 3 | 390 | 3.91e-136 | 395 |
| MS.gene010971.t1 | AT1G47710 | 51.918 | 391 | 182 | 5 | 6 | 393 | 30 | 417 | 2.34e-135 | 394 |
| MS.gene010971.t1 | AT2G25240 | 47.815 | 389 | 188 | 8 | 8 | 392 | 5 | 382 | 1.45e-116 | 345 |
| MS.gene010971.t1 | AT2G26390 | 44.898 | 392 | 199 | 6 | 8 | 392 | 5 | 386 | 2.40e-113 | 337 |
| MS.gene010971.t1 | AT3G45220 | 43.544 | 395 | 204 | 6 | 8 | 392 | 5 | 390 | 4.30e-109 | 326 |
| MS.gene010971.t1 | AT1G64030 | 44.757 | 391 | 190 | 6 | 6 | 392 | 3 | 371 | 2.18e-104 | 313 |
| MS.gene010971.t1 | AT1G62170 | 43.935 | 371 | 172 | 6 | 31 | 392 | 88 | 431 | 1.78e-100 | 305 |
| MS.gene010971.t1 | AT2G14540 | 43.478 | 391 | 193 | 7 | 6 | 392 | 31 | 397 | 1.07e-95 | 292 |
| MS.gene010971.t1 | AT2G35580 | 44.475 | 362 | 171 | 9 | 38 | 392 | 33 | 371 | 1.12e-93 | 286 |
| MS.gene010971.t1 | AT1G62170 | 40.842 | 404 | 170 | 8 | 31 | 392 | 88 | 464 | 1.70e-93 | 288 |
| MS.gene010971.t1 | AT1G64010 | 44.796 | 221 | 94 | 5 | 174 | 392 | 1 | 195 | 9.57e-59 | 190 |
| MS.gene010971.t1 | AT1G64010 | 44.660 | 206 | 86 | 5 | 189 | 392 | 2 | 181 | 7.70e-52 | 172 |
| MS.gene010971.t1 | AT1G63280 | 54.237 | 118 | 50 | 2 | 130 | 245 | 5 | 120 | 7.81e-35 | 125 |
| MS.gene010971.t1 | AT1G62160 | 41.848 | 184 | 76 | 4 | 213 | 392 | 62 | 218 | 3.37e-33 | 124 |
| MS.gene010971.t1 | AT1G51330 | 51.786 | 112 | 51 | 3 | 131 | 239 | 29 | 140 | 6.39e-27 | 106 |
| MS.gene010971.t1 | AT1G64020 | 34.862 | 109 | 69 | 2 | 16 | 123 | 13 | 120 | 3.18e-13 | 66.6 |
Find 82 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAAAAGAAGTGAATTTA+TGG | 0.175161 | 7.1:-51084375 | MS.gene010971:CDS |
| AGTAAAGAACTTTATGTTTC+CGG | 0.199606 | 7.1:-51083833 | MS.gene010971:CDS |
| TCTGAGTTGCTAAAGAAATT+AGG | 0.232348 | 7.1:-51083911 | MS.gene010971:CDS |
| CCATCTTTGCCTTGTTTATA+AGG | 0.242434 | 7.1:+51084106 | None:intergenic |
| GTCAAACCTCCCATAGAAAA+AGG | 0.264352 | 7.1:+51083878 | None:intergenic |
| ATCATTCTTGCTGGTCATAA+AGG | 0.270660 | 7.1:+51084171 | None:intergenic |
| ACATAAAGTTCTTTACTAAT+AGG | 0.293337 | 7.1:+51083839 | None:intergenic |
| CACCTTTCCAACAAAGAGTA+TGG | 0.347373 | 7.1:+51083640 | None:intergenic |
| AAATATTGAATCTTGGAATC+TGG | 0.361167 | 7.1:+51083951 | None:intergenic |
| CTTGTTTCTTCTGTGCTCTC+CGG | 0.362058 | 7.1:-51085975 | MS.gene010971:CDS |
| TTGTTTCTTCTGTGCTCTCC+GGG | 0.381696 | 7.1:-51085974 | MS.gene010971:CDS |
| CTGATCAGAGAAGAGTTTAG+TGG | 0.389922 | 7.1:-51083665 | MS.gene010971:CDS |
| GACGAACTGATCATTCTTGC+TGG | 0.397498 | 7.1:+51084162 | None:intergenic |
| CCTTGCTTGTCTTACGTCAA+TGG | 0.408285 | 7.1:-51085936 | MS.gene010971:CDS |
| CCTTATAAACAAGGCAAAGA+TGG | 0.409361 | 7.1:-51084106 | MS.gene010971:CDS |
| GTGCTCTCCGGGGCTCGCAC+TGG | 0.410447 | 7.1:-51085963 | MS.gene010971:CDS |
| AGAAACAAGCTGAGAGCATA+AGG | 0.429286 | 7.1:+51085989 | None:intergenic |
| TCAGAAGAAATATTGAATCT+TGG | 0.431161 | 7.1:+51083944 | None:intergenic |
| AGTAGTCATAAGTTGTTTGA+AGG | 0.434567 | 7.1:+51085878 | None:intergenic |
| GTTGTCAGCTTTGATTGATA+AGG | 0.435094 | 7.1:-51084038 | MS.gene010971:CDS |
| AGCACGGTGTTGAGCGATAA+TGG | 0.435236 | 7.1:+51086098 | None:intergenic |
| GTCATAAGTTGTTTGAAGGA+AGG | 0.435473 | 7.1:+51085882 | None:intergenic |
| TTGATTGGATAACAAGTGTT+TGG | 0.436645 | 7.1:+51086151 | None:intergenic |
| GAGAAAAGAAGTGAATTTAT+GGG | 0.437617 | 7.1:-51084374 | MS.gene010971:CDS |
| AGTGAATTTATGGGCTGAAA+AGG | 0.440578 | 7.1:-51084365 | MS.gene010971:CDS |
| TTTCTTCCAGATGCAAAAGA+AGG | 0.445127 | 7.1:-51084061 | MS.gene010971:CDS |
| CAAGTGTTTGGTGATGTTCA+TGG | 0.446905 | 7.1:+51086163 | None:intergenic |
| GTCTTACGTCAATGGTGTGT+GGG | 0.450358 | 7.1:-51085928 | MS.gene010971:CDS |
| AGTGGAACCATACTCTTTGT+TGG | 0.451399 | 7.1:-51083647 | MS.gene010971:CDS |
| CTCTCCGGGGCTCGCACTGG+TGG | 0.452692 | 7.1:-51085960 | MS.gene010971:CDS |
| TCAATTGGAGGGACCGGAGG+GGG | 0.459884 | 7.1:+51083716 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.465672 | 7.1:-51083794 | MS.gene010971:CDS |
| TGACTGTTGGCATGGTAGGC+GGG | 0.465714 | 7.1:-51083754 | MS.gene010971:CDS |
| TTTCTCCAGTCTGAATCAAC+CGG | 0.467958 | 7.1:-51086023 | MS.gene010971:CDS |
| TCATTCTTGCTGGTCATAAA+GGG | 0.472999 | 7.1:+51084172 | None:intergenic |
| AAGGTGGTCAATCCTCTTGA+TGG | 0.480370 | 7.1:-51083623 | MS.gene010971:CDS |
| TGTTCATGGAAACGTTGGTT+AGG | 0.481229 | 7.1:+51086177 | None:intergenic |
| TTGAGTGGGACCCTCGGAGC+CGG | 0.490233 | 7.1:+51086061 | None:intergenic |
| TGGTCAGCTACAAAGTCAAT+TGG | 0.500762 | 7.1:+51083701 | None:intergenic |
| GAAAGACTTCTGAAATATAC+CGG | 0.508695 | 7.1:+51083814 | None:intergenic |
| TTGCAAAGATTAGACTCGTT+AGG | 0.510182 | 7.1:+51084293 | None:intergenic |
| CTTATAAACAAGGCAAAGAT+GGG | 0.514546 | 7.1:-51084105 | MS.gene010971:CDS |
| CTTGGTCTTCCTTATAAACA+AGG | 0.520368 | 7.1:-51084115 | MS.gene010971:CDS |
| AACCATACTCTTTGTTGGAA+AGG | 0.525947 | 7.1:-51083642 | MS.gene010971:CDS |
| ATGATCGCTGCCGGCTCCGA+GGG | 0.526010 | 7.1:-51086071 | MS.gene010971:CDS |
| ACAAAGTCAATTGGAGGGAC+CGG | 0.526884 | 7.1:+51083710 | None:intergenic |
| GTGACTGTTGGCATGGTAGG+CGG | 0.527948 | 7.1:-51083755 | MS.gene010971:CDS |
| GCAAATGCACTATACTTCAA+AGG | 0.528381 | 7.1:-51084274 | MS.gene010971:CDS |
| GCGGTGACTGTTGGCATGGT+AGG | 0.529850 | 7.1:-51083758 | MS.gene010971:CDS |
| AGGTCCACCAGTGCGAGCCC+CGG | 0.531653 | 7.1:+51085956 | None:intergenic |
| AGTCAATTGGAGGGACCGGA+GGG | 0.531920 | 7.1:+51083714 | None:intergenic |
| GTCAATTGGAGGGACCGGAG+GGG | 0.545085 | 7.1:+51083715 | None:intergenic |
| TTCTTCCAGATGCAAAAGAA+GGG | 0.553642 | 7.1:-51084060 | MS.gene010971:CDS |
| GATCACCGGTTGATTCAGAC+TGG | 0.553675 | 7.1:+51086018 | None:intergenic |
| GCATAAGGATTTGAGATCAC+CGG | 0.555207 | 7.1:+51086004 | None:intergenic |
| TATGATCGCTGCCGGCTCCG+AGG | 0.555454 | 7.1:-51086072 | MS.gene010971:CDS |
| TCTCAATGGCAAGTCAGTAA+AGG | 0.555621 | 7.1:-51084197 | MS.gene010971:CDS |
| GGTTGATTCAGACTGGAGAA+AGG | 0.558446 | 7.1:+51086025 | None:intergenic |
| AAAGCTGCAGCGGTGACTGT+TGG | 0.567765 | 7.1:-51083767 | MS.gene010971:CDS |
| GTTAGGCTGTGAACTAAGCC+AGG | 0.569861 | 7.1:+51084310 | None:intergenic |
| CATACTCTTTGTTGGAAAGG+TGG | 0.571116 | 7.1:-51083639 | MS.gene010971:CDS |
| AGGTGGTCAATCCTCTTGAT+GGG | 0.571602 | 7.1:-51083622 | MS.gene010971:CDS |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.574991 | 7.1:+51085891 | None:intergenic |
| TGTCTTACGTCAATGGTGTG+TGG | 0.580488 | 7.1:-51085929 | MS.gene010971:CDS |
| CACTATACTTCAAAGGAGTG+TGG | 0.582450 | 7.1:-51084267 | MS.gene010971:CDS |
| TTACTGACTTGCCATTGAGA+AGG | 0.583004 | 7.1:+51084200 | None:intergenic |
| AAGTCAATTGGAGGGACCGG+AGG | 0.584759 | 7.1:+51083713 | None:intergenic |
| GTGCTCAGTATGATCGCTGC+CGG | 0.586534 | 7.1:-51086080 | MS.gene010971:CDS |
| CTTGTTTATAAGGAAGACCA+AGG | 0.603135 | 7.1:+51084116 | None:intergenic |
| TTCAACAATCACCCATCAAG+AGG | 0.605491 | 7.1:+51083611 | None:intergenic |
| TCAGCTACAAAGTCAATTGG+AGG | 0.607657 | 7.1:+51083704 | None:intergenic |
| AGAAAAGGAGTACCTTGTTG+AGG | 0.607756 | 7.1:+51085823 | None:intergenic |
| TGAAGTTGATTTCCTCAACA+AGG | 0.614896 | 7.1:-51085835 | MS.gene010971:intron |
| GGTGATGTTCATGGAAACGT+TGG | 0.634641 | 7.1:+51086172 | None:intergenic |
| TGGGCTGAAAAGGAGACAGA+AGG | 0.644580 | 7.1:-51084355 | MS.gene010971:CDS |
| TGTTTCTTCTGTGCTCTCCG+GGG | 0.647438 | 7.1:-51085973 | MS.gene010971:CDS |
| TGCAGCGGTGACTGTTGGCA+TGG | 0.650418 | 7.1:-51083762 | MS.gene010971:CDS |
| GGCAGCGATCATACTGAGCA+CGG | 0.656326 | 7.1:+51086082 | None:intergenic |
| CAGCTACAAAGTCAATTGGA+GGG | 0.661369 | 7.1:+51083705 | None:intergenic |
| AGAAGGTACGAAAGCTGCAG+CGG | 0.664748 | 7.1:-51083777 | MS.gene010971:CDS |
| AGGCTGTGAACTAAGCCAGG+TGG | 0.725274 | 7.1:+51084313 | None:intergenic |
| CCATTGACGTAAGACAAGCA+AGG | 0.746622 | 7.1:+51085936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTTTACTTATATTAT+TGG | + | chr7.1:51085343-51085362 | None:intergenic | 10.0% |
| !!! | TAAAAATTAAATTTGCTTAA+AGG | + | chr7.1:51084825-51084844 | None:intergenic | 10.0% |
| !!! | TTAAGTTATTATTTTTTGAA+TGG | - | chr7.1:51084501-51084520 | MS.gene010971:intron | 10.0% |
| !! | TTCTTAATTACTTGATTAAT+TGG | - | chr7.1:51084606-51084625 | MS.gene010971:intron | 15.0% |
| !!! | ATATCAATATTGATTTAACA+TGG | + | chr7.1:51084442-51084461 | None:intergenic | 15.0% |
| !!! | TATCAATATTGATTTAACAT+GGG | + | chr7.1:51084441-51084460 | None:intergenic | 15.0% |
| !!! | TATTTTAATTTCTTTTGACA+CGG | - | chr7.1:51084779-51084798 | MS.gene010971:intron | 15.0% |
| !!! | TCAAATGATTTATTTTAAGA+TGG | - | chr7.1:51085394-51085413 | MS.gene010971:intron | 15.0% |
| !! | AAGATTGAAAAAGAAAGAAA+AGG | + | chr7.1:51084026-51084045 | None:intergenic | 20.0% |
| !! | ACATAAAGTTCTTTACTAAT+AGG | + | chr7.1:51085995-51086014 | None:intergenic | 20.0% |
| !! | TAATCAAGTAATTAAGAAAG+AGG | + | chr7.1:51084604-51084623 | None:intergenic | 20.0% |
| !! | TACAATTGATACTTATTTGA+AGG | - | chr7.1:51085424-51085443 | MS.gene010971:intron | 20.0% |
| !!! | ATAAGTTTGTTGTTCATAAT+TGG | + | chr7.1:51085048-51085067 | None:intergenic | 20.0% |
| !!! | TAGAATGAATACTGATATTT+TGG | + | chr7.1:51084645-51084664 | None:intergenic | 20.0% |
| ! | AAATATTGAATCTTGGAATC+TGG | + | chr7.1:51085883-51085902 | None:intergenic | 25.0% |
| ! | AACTCATATACACAACTATT+TGG | - | chr7.1:51084407-51084426 | MS.gene010971:intron | 25.0% |
| ! | AGTAAAGAACTTTATGTTTC+CGG | - | chr7.1:51085998-51086017 | MS.gene010971:CDS | 25.0% |
| ! | ATATGACATTATTGATATGC+GGG | + | chr7.1:51084224-51084243 | None:intergenic | 25.0% |
| ! | ATGAGATATGAATGAGATAT+GGG | - | chr7.1:51084921-51084940 | MS.gene010971:intron | 25.0% |
| ! | ATTCATATCTCATATCTCAT+TGG | + | chr7.1:51084914-51084933 | None:intergenic | 25.0% |
| ! | CAAAACAAATAATGTGACTT+TGG | - | chr7.1:51085108-51085127 | MS.gene010971:intron | 25.0% |
| ! | CTCTGATCAGAAATAAAAAA+GGG | + | chr7.1:51086156-51086175 | None:intergenic | 25.0% |
| ! | GAGAAAAGAAGTGAATTTAT+GGG | - | chr7.1:51085457-51085476 | MS.gene010971:intron | 25.0% |
| ! | GATATGACATTATTGATATG+CGG | + | chr7.1:51084225-51084244 | None:intergenic | 25.0% |
| ! | TAGTCTCTAACATTAAACTA+TGG | + | chr7.1:51084283-51084302 | None:intergenic | 25.0% |
| ! | TATGAGATATGAATGAGATA+TGG | - | chr7.1:51084920-51084939 | MS.gene010971:intron | 25.0% |
| ! | TCAGAAGAAATATTGAATCT+TGG | + | chr7.1:51085890-51085909 | None:intergenic | 25.0% |
| ! | TCCTTATAAAAAAAGATTCC+CGG | - | chr7.1:51084247-51084266 | MS.gene010971:CDS | 25.0% |
| ! | TCTCTGATCAGAAATAAAAA+AGG | + | chr7.1:51086157-51086176 | None:intergenic | 25.0% |
| ! | TGAGAAAAGAAGTGAATTTA+TGG | - | chr7.1:51085456-51085475 | MS.gene010971:intron | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | - | chr7.1:51086037-51086056 | MS.gene010971:CDS | 25.0% |
| ! | TTGTATTCAAAATGAGTCAA+AGG | + | chr7.1:51085220-51085239 | None:intergenic | 25.0% |
| !! | ATTATTGGCACATATTTTGT+TGG | + | chr7.1:51085328-51085347 | None:intergenic | 25.0% |
| !! | CTCACAATCATAAACTATTT+TGG | + | chr7.1:51084158-51084177 | None:intergenic | 25.0% |
| !! | TTGACTTTACCTTTTTCTAT+GGG | - | chr7.1:51085944-51085963 | MS.gene010971:CDS | 25.0% |
| !!! | ACACTAATGTTGATAATGTT+AGG | + | chr7.1:51084569-51084588 | None:intergenic | 25.0% |
| !!! | ATTGACTTTACCTTTTTCTA+TGG | - | chr7.1:51085943-51085962 | MS.gene010971:CDS | 25.0% |
| !!! | ATTTTGTTGGTAAATCAGTT+AGG | + | chr7.1:51085315-51085334 | None:intergenic | 25.0% |
| !!! | TTTGATGGTTTTAAAATCCT+TGG | - | chr7.1:51085698-51085717 | MS.gene010971:intron | 25.0% |
| !!! | TTTTGTTGGTAAATCAGTTA+GGG | + | chr7.1:51085314-51085333 | None:intergenic | 25.0% |
| !!! | TTTTTTCATAAGCAGATTGA+GGG | - | chr7.1:51084702-51084721 | MS.gene010971:intron | 25.0% |
| !!! | TTTTTTGAATGGATTGTGAT+CGG | - | chr7.1:51084512-51084531 | MS.gene010971:intron | 25.0% |
| !!! | TTTTTTTCATAAGCAGATTG+AGG | - | chr7.1:51084701-51084720 | MS.gene010971:intron | 25.0% |
| AGATGCATTAGAGACTATTA+TGG | - | chr7.1:51084343-51084362 | MS.gene010971:CDS | 30.0% | |
| AGTAGTCATAAGTTGTTTGA+AGG | + | chr7.1:51083956-51083975 | None:intergenic | 30.0% | |
| ATTAAAAATCTTCTTCCACC+TGG | - | chr7.1:51085503-51085522 | MS.gene010971:intron | 30.0% | |
| CTAATGTCTTGACAATTAAC+TGG | - | chr7.1:51085262-51085281 | MS.gene010971:intron | 30.0% | |
| CTTATAAACAAGGCAAAGAT+GGG | - | chr7.1:51085726-51085745 | MS.gene010971:intron | 30.0% | |
| GGATCAATAAATCTCACTAT+TGG | - | chr7.1:51084992-51085011 | MS.gene010971:intron | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | - | chr7.1:51085920-51085939 | MS.gene010971:CDS | 30.0% | |
| TGAACCATTAATGAGATTTG+CGG | - | chr7.1:51084536-51084555 | MS.gene010971:intron | 30.0% | |
| TGATCAGAAATAAAAAAGGG+TGG | + | chr7.1:51086153-51086172 | None:intergenic | 30.0% | |
| TTATAATTCCATTTCACCGT+GGG | - | chr7.1:51084971-51084990 | MS.gene010971:intron | 30.0% | |
| TTGATTGAGTACACAATCAA+AGG | - | chr7.1:51084305-51084324 | MS.gene010971:CDS | 30.0% | |
| TTGATTGGATAACAAGTGTT+TGG | + | chr7.1:51083683-51083702 | None:intergenic | 30.0% | |
| TTTATAATTCCATTTCACCG+TGG | - | chr7.1:51084970-51084989 | MS.gene010971:intron | 30.0% | |
| ! | AAGGAGTTGATTGTGTTTAA+AGG | + | chr7.1:51084756-51084775 | None:intergenic | 30.0% |
| ! | CTTTTCTCTGAGTTTTTGAT+TGG | + | chr7.1:51083698-51083717 | None:intergenic | 30.0% |
| ! | TTAGGTTTGTGAGTGATTTT+CGG | + | chr7.1:51083639-51083658 | None:intergenic | 30.0% |
| ! | TTTGTTGGTAAATCAGTTAG+GGG | + | chr7.1:51085313-51085332 | None:intergenic | 30.0% |
| !! | ATGTTGATAATGTTAGGCTA+AGG | + | chr7.1:51084563-51084582 | None:intergenic | 30.0% |
| !! | GAAAGACTTCTGAAATATAC+CGG | + | chr7.1:51086020-51086039 | None:intergenic | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | - | chr7.1:51085620-51085639 | MS.gene010971:intron | 30.0% |
| !!! | ACCGGGAATCTTTTTTTATA+AGG | + | chr7.1:51084251-51084270 | None:intergenic | 30.0% |
| !!! | CTTGTTTTTGTGTTGGTATA+TGG | + | chr7.1:51084853-51084872 | None:intergenic | 30.0% |
| AAAAAGATTCCCGGTCATAT+CGG | - | chr7.1:51084256-51084275 | MS.gene010971:CDS | 35.0% | |
| AACCATACTCTTTGTTGGAA+AGG | - | chr7.1:51086189-51086208 | MS.gene010971:CDS | 35.0% | |
| AGTGAGATTTATTGATCCCA+CGG | + | chr7.1:51084990-51085009 | None:intergenic | 35.0% | |
| ATAAGCAGATTGAGGGATAA+GGG | - | chr7.1:51084709-51084728 | MS.gene010971:intron | 35.0% | |
| ATACCAACACAAAAACAAGC+AGG | - | chr7.1:51084854-51084873 | MS.gene010971:intron | 35.0% | |
| ATCATTCTTGCTGGTCATAA+AGG | + | chr7.1:51085663-51085682 | None:intergenic | 35.0% | |
| CAATCTTCCTCGTAAAAAAG+TGG | - | chr7.1:51085844-51085863 | MS.gene010971:CDS | 35.0% | |
| CCTTATAAACAAGGCAAAGA+TGG | - | chr7.1:51085725-51085744 | MS.gene010971:intron | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | + | chr7.1:51085718-51085737 | None:intergenic | 35.0% | |
| GCAAATGCACTATACTTCAA+AGG | - | chr7.1:51085557-51085576 | MS.gene010971:intron | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | + | chr7.1:51083952-51083971 | None:intergenic | 35.0% | |
| GTCTTGACAATTAACTGGAT+GGG | - | chr7.1:51085267-51085286 | MS.gene010971:intron | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | - | chr7.1:51085961-51085980 | MS.gene010971:CDS | 35.0% | |
| TCATTCTTGCTGGTCATAAA+GGG | + | chr7.1:51085662-51085681 | None:intergenic | 35.0% | |
| TGTCTTGACAATTAACTGGA+TGG | - | chr7.1:51085266-51085285 | MS.gene010971:intron | 35.0% | |
| TTCTTCCAGATGCAAAAGAA+GGG | - | chr7.1:51085771-51085790 | MS.gene010971:intron | 35.0% | |
| TTGCAAAGATTAGACTCGTT+AGG | + | chr7.1:51085541-51085560 | None:intergenic | 35.0% | |
| TTTCTTCCAGATGCAAAAGA+AGG | - | chr7.1:51085770-51085789 | MS.gene010971:intron | 35.0% | |
| ! | ACTTTACCTTTTTCTATGGG+AGG | - | chr7.1:51085947-51085966 | MS.gene010971:CDS | 35.0% |
| ! | AGCTTCTGATTCTGAGTTTT+TGG | - | chr7.1:51085817-51085836 | MS.gene010971:intron | 35.0% |
| ! | AGTGAATTTATGGGCTGAAA+AGG | - | chr7.1:51085466-51085485 | MS.gene010971:intron | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | - | chr7.1:51085716-51085735 | MS.gene010971:intron | 35.0% |
| ! | GTTGTCAGCTTTGATTGATA+AGG | - | chr7.1:51085793-51085812 | MS.gene010971:intron | 35.0% |
| ! | GTTTGCTACTTCAAAAACGA+AGG | - | chr7.1:51085595-51085614 | MS.gene010971:intron | 35.0% |
| ! | TGAAGTTGATTTCCTCAACA+AGG | - | chr7.1:51083996-51084015 | MS.gene010971:CDS | 35.0% |
| !! | ACTTGCTGTTGTGCATAATT+TGG | - | chr7.1:51085170-51085189 | MS.gene010971:intron | 35.0% |
| !! | CCATCTTTGCCTTGTTTATA+AGG | + | chr7.1:51085728-51085747 | None:intergenic | 35.0% |
| !! | CTTGCTGTTGTGCATAATTT+GGG | - | chr7.1:51085171-51085190 | MS.gene010971:intron | 35.0% |
| AAACTATGGACCGATATGAC+CGG | + | chr7.1:51084269-51084288 | None:intergenic | 40.0% | |
| AGGACCGCAAATCTCATTAA+TGG | + | chr7.1:51084543-51084562 | None:intergenic | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | - | chr7.1:51086184-51086203 | MS.gene010971:CDS | 40.0% | |
| ATGCTGTTGTGCATAATGCA+AGG | - | chr7.1:51085066-51085085 | MS.gene010971:intron | 40.0% | |
| ATGTGCCATGCTTAGAGTTT+AGG | - | chr7.1:51084052-51084071 | MS.gene010971:CDS | 40.0% | |
| CACCTTTCCAACAAAGAGTA+TGG | + | chr7.1:51086194-51086213 | None:intergenic | 40.0% | |
| CACTATACTTCAAAGGAGTG+TGG | - | chr7.1:51085564-51085583 | MS.gene010971:intron | 40.0% | |
| CAGCTACAAAGTCAATTGGA+GGG | + | chr7.1:51086129-51086148 | None:intergenic | 40.0% | |
| CATAAGCAGATTGAGGGATA+AGG | - | chr7.1:51084708-51084727 | MS.gene010971:intron | 40.0% | |
| CATACTCTTTGTTGGAAAGG+TGG | - | chr7.1:51086192-51086211 | MS.gene010971:CDS | 40.0% | |
| CCTCGTAAAAAAGTGGAAGT+AGG | - | chr7.1:51085851-51085870 | MS.gene010971:CDS | 40.0% | |
| CTGATCAGAGAAGAGTTTAG+TGG | - | chr7.1:51086166-51086185 | MS.gene010971:CDS | 40.0% | |
| GAAACCCTAAACTCTAAGCA+TGG | + | chr7.1:51084060-51084079 | None:intergenic | 40.0% | |
| GATCCTCATTCCACATTAAG+GGG | - | chr7.1:51084365-51084384 | MS.gene010971:CDS | 40.0% | |
| GGATCCTCATTCCACATTAA+GGG | - | chr7.1:51084364-51084383 | MS.gene010971:CDS | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | + | chr7.1:51085956-51085975 | None:intergenic | 40.0% | |
| TAAACTCTAAGCATGGCACA+TGG | + | chr7.1:51084053-51084072 | None:intergenic | 40.0% | |
| TAAGCAGATTGAGGGATAAG+GGG | - | chr7.1:51084710-51084729 | MS.gene010971:intron | 40.0% | |
| TCAGCTACAAAGTCAATTGG+AGG | + | chr7.1:51086130-51086149 | None:intergenic | 40.0% | |
| TCTCAATGGCAAGTCAGTAA+AGG | - | chr7.1:51085634-51085653 | MS.gene010971:intron | 40.0% | |
| TGGATCCTCATTCCACATTA+AGG | - | chr7.1:51084363-51084382 | MS.gene010971:CDS | 40.0% | |
| TGGTCAGCTACAAAGTCAAT+TGG | + | chr7.1:51086133-51086152 | None:intergenic | 40.0% | |
| TGTGCCATGCTTAGAGTTTA+GGG | - | chr7.1:51084053-51084072 | MS.gene010971:CDS | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | + | chr7.1:51083943-51083962 | None:intergenic | 40.0% | |
| TTATTGATCCCACGGTGAAA+TGG | + | chr7.1:51084982-51085001 | None:intergenic | 40.0% | |
| TTTCTCCAGTCTGAATCAAC+CGG | - | chr7.1:51083808-51083827 | MS.gene010971:CDS | 40.0% | |
| ! | AGAAACAAGCTGAGAGCATA+AGG | + | chr7.1:51083845-51083864 | None:intergenic | 40.0% |
| ! | CAGTTCGTCAGTTCTTTTGA+TGG | - | chr7.1:51085683-51085702 | MS.gene010971:intron | 40.0% |
| ! | GCATAAGGATTTGAGATCAC+CGG | + | chr7.1:51083830-51083849 | None:intergenic | 40.0% |
| ! | TGTTCATGGAAACGTTGGTT+AGG | + | chr7.1:51083657-51083676 | None:intergenic | 40.0% |
| !! | AGAAAAGGAGTACCTTGTTG+AGG | + | chr7.1:51084011-51084030 | None:intergenic | 40.0% |
| !! | CAAGTGTTTGGTGATGTTCA+TGG | + | chr7.1:51083671-51083690 | None:intergenic | 40.0% |
| !! | TTACTGACTTGCCATTGAGA+AGG | + | chr7.1:51085634-51085653 | None:intergenic | 40.0% |
| !!! | CAACCTGCTTGTTTTTGTGT+TGG | + | chr7.1:51084860-51084879 | None:intergenic | 40.0% |
| !!! | CCTACTTCCACTTTTTTACG+AGG | + | chr7.1:51085854-51085873 | None:intergenic | 40.0% |
| !!! | GAGAGCAGTTGTTTTTGAGT+GGG | + | chr7.1:51083787-51083806 | None:intergenic | 40.0% |
| AACTATGGACCGATATGACC+GGG | + | chr7.1:51084268-51084287 | None:intergenic | 45.0% | |
| AAGGTGGTCAATCCTCTTGA+TGG | - | chr7.1:51086208-51086227 | MS.gene010971:CDS | 45.0% | |
| ACAAAGTCAATTGGAGGGAC+CGG | + | chr7.1:51086124-51086143 | None:intergenic | 45.0% | |
| AGGTGGTCAATCCTCTTGAT+GGG | - | chr7.1:51086209-51086228 | MS.gene010971:CDS | 45.0% | |
| CCATTGACGTAAGACAAGCA+AGG | + | chr7.1:51083898-51083917 | None:intergenic | 45.0% | |
| CCTTGCTTGTCTTACGTCAA+TGG | - | chr7.1:51083895-51083914 | MS.gene010971:CDS | 45.0% | |
| GACGAACTGATCATTCTTGC+TGG | + | chr7.1:51085672-51085691 | None:intergenic | 45.0% | |
| GAGATATGGGATCAAACAGC+AGG | - | chr7.1:51084934-51084953 | MS.gene010971:intron | 45.0% | |
| GGGAGGTTTGACAAAAATGG+TGG | - | chr7.1:51085964-51085983 | MS.gene010971:CDS | 45.0% | |
| GGTGATGTTCATGGAAACGT+TGG | + | chr7.1:51083662-51083681 | None:intergenic | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | - | chr7.1:51083903-51083922 | MS.gene010971:CDS | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | - | chr7.1:51083902-51083921 | MS.gene010971:CDS | 45.0% | |
| TTCATGTTCGCCCCTTAATG+TGG | + | chr7.1:51084378-51084397 | None:intergenic | 45.0% | |
| ! | CTTGTTTCTTCTGTGCTCTC+CGG | - | chr7.1:51083856-51083875 | MS.gene010971:CDS | 45.0% |
| ! | GACAACCCTTCTTTTGCATC+TGG | + | chr7.1:51085779-51085798 | None:intergenic | 45.0% |
| ! | GGTTGATTCAGACTGGAGAA+AGG | + | chr7.1:51083809-51083828 | None:intergenic | 45.0% |
| ! | TTGTTTCTTCTGTGCTCTCC+GGG | - | chr7.1:51083857-51083876 | MS.gene010971:CDS | 45.0% |
| !!! | GGAGAGCAGTTGTTTTTGAG+TGG | + | chr7.1:51083788-51083807 | None:intergenic | 45.0% |
| !!! | TTGTTTTTGAGTGGGACCCT+CGG | + | chr7.1:51083779-51083798 | None:intergenic | 45.0% |
| !! | AAAAGAAATTAAAATATAAA+AGG | + | chr7.1:51084775-51084794 | None:intergenic | 5.0% |
| GTTAGGCTGTGAACTAAGCC+AGG | + | chr7.1:51085524-51085543 | None:intergenic | 50.0% | |
| TCGCCCCTTAATGTGGAATG+AGG | + | chr7.1:51084371-51084390 | None:intergenic | 50.0% | |
| TGGGCTGAAAAGGAGACAGA+AGG | - | chr7.1:51085476-51085495 | MS.gene010971:intron | 50.0% | |
| TGTTTCTTCTGTGCTCTCCG+GGG | - | chr7.1:51083858-51083877 | MS.gene010971:CDS | 50.0% | |
| ! | AGAAGGTACGAAAGCTGCAG+CGG | - | chr7.1:51086054-51086073 | MS.gene010971:CDS | 50.0% |
| ! | AGCACGGTGTTGAGCGATAA+TGG | + | chr7.1:51083736-51083755 | None:intergenic | 50.0% |
| ! | GATCACCGGTTGATTCAGAC+TGG | + | chr7.1:51083816-51083835 | None:intergenic | 50.0% |
| AAAGCTGCAGCGGTGACTGT+TGG | - | chr7.1:51086064-51086083 | MS.gene010971:CDS | 55.0% | |
| AAGTCAATTGGAGGGACCGG+AGG | + | chr7.1:51086121-51086140 | None:intergenic | 55.0% | |
| AGGCTGTGAACTAAGCCAGG+TGG | + | chr7.1:51085521-51085540 | None:intergenic | 55.0% | |
| AGTCAATTGGAGGGACCGGA+GGG | + | chr7.1:51086120-51086139 | None:intergenic | 55.0% | |
| GGCAGCGATCATACTGAGCA+CGG | + | chr7.1:51083752-51083771 | None:intergenic | 55.0% | |
| GTGACTGTTGGCATGGTAGG+CGG | - | chr7.1:51086076-51086095 | MS.gene010971:CDS | 55.0% | |
| GTGCTCAGTATGATCGCTGC+CGG | - | chr7.1:51083751-51083770 | MS.gene010971:CDS | 55.0% | |
| TGACTGTTGGCATGGTAGGC+GGG | - | chr7.1:51086077-51086096 | MS.gene010971:CDS | 55.0% | |
| GCGGTGACTGTTGGCATGGT+AGG | - | chr7.1:51086073-51086092 | MS.gene010971:CDS | 60.0% | |
| GTCAATTGGAGGGACCGGAG+GGG | + | chr7.1:51086119-51086138 | None:intergenic | 60.0% | |
| TCAATTGGAGGGACCGGAGG+GGG | + | chr7.1:51086118-51086137 | None:intergenic | 60.0% | |
| TGCAGCGGTGACTGTTGGCA+TGG | - | chr7.1:51086069-51086088 | MS.gene010971:CDS | 60.0% | |
| TGCTCCGTATAGACCCCCTC+CGG | - | chr7.1:51086102-51086121 | MS.gene010971:CDS | 60.0% | |
| GGGACCGGAGGGGGTCTATA+CGG | + | chr7.1:51086109-51086128 | None:intergenic | 65.0% | |
| TTGAGTGGGACCCTCGGAGC+CGG | + | chr7.1:51083773-51083792 | None:intergenic | 65.0% | |
| !! | ATGATCGCTGCCGGCTCCGA+GGG | - | chr7.1:51083760-51083779 | MS.gene010971:CDS | 65.0% |
| !! | TATGATCGCTGCCGGCTCCG+AGG | - | chr7.1:51083759-51083778 | MS.gene010971:CDS | 65.0% |
| AGGTCCACCAGTGCGAGCCC+CGG | + | chr7.1:51083878-51083897 | None:intergenic | 70.0% | |
| CTCTCCGGGGCTCGCACTGG+TGG | - | chr7.1:51083871-51083890 | MS.gene010971:CDS | 75.0% | |
| GTGCTCTCCGGGGCTCGCAC+TGG | - | chr7.1:51083868-51083887 | MS.gene010971:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 51083619 | 51086234 | 51083619 | ID=MS.gene010971 |
| chr7.1 | mRNA | 51083619 | 51086234 | 51083619 | ID=MS.gene010971.t1;Parent=MS.gene010971 |
| chr7.1 | exon | 51085836 | 51086234 | 51085836 | ID=MS.gene010971.t1.exon1;Parent=MS.gene010971.t1 |
| chr7.1 | CDS | 51085836 | 51086234 | 51085836 | ID=cds.MS.gene010971.t1;Parent=MS.gene010971.t1 |
| chr7.1 | exon | 51083619 | 51084407 | 51083619 | ID=MS.gene010971.t1.exon2;Parent=MS.gene010971.t1 |
| chr7.1 | CDS | 51083619 | 51084407 | 51083619 | ID=cds.MS.gene010971.t1;Parent=MS.gene010971.t1 |
| Gene Sequence |
| Protein sequence |
