Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010973.t1 | XP_013448414.1 | 84 | 401 | 54 | 2 | 5 | 396 | 3 | 402 | 3.90E-185 | 657.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010973.t1 | Q9S7T8 | 50.0 | 394 | 178 | 5 | 14 | 394 | 3 | 390 | 2.7e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010973.t1 | A0A072TZ50 | 84.0 | 401 | 54 | 2 | 5 | 396 | 3 | 402 | 2.8e-185 | 657.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene010973 | PPI |
| MS.gene010973 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene010973 | PPI |
| MS.gene010973 | MS.gene065944 | PPI |
| MS.gene031697 | MS.gene010973 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010973.t1 | MTR_7g050810 | 82.469 | 405 | 61 | 2 | 1 | 396 | 1 | 404 | 0.0 | 651 |
| MS.gene010973.t1 | MTR_7g451890 | 83.292 | 401 | 57 | 2 | 5 | 396 | 3 | 402 | 0.0 | 650 |
| MS.gene010973.t1 | MTR_7g047780 | 83.541 | 401 | 56 | 2 | 5 | 396 | 3 | 402 | 0.0 | 644 |
| MS.gene010973.t1 | MTR_7g050750 | 83.544 | 395 | 55 | 2 | 11 | 396 | 3 | 396 | 0.0 | 639 |
| MS.gene010973.t1 | MTR_7g050830 | 79.518 | 332 | 37 | 2 | 1 | 312 | 1 | 321 | 0.0 | 515 |
| MS.gene010973.t1 | MTR_3g101180 | 64.232 | 397 | 128 | 2 | 12 | 394 | 2 | 398 | 4.73e-177 | 499 |
| MS.gene010973.t1 | MTR_8g461160 | 65.553 | 389 | 124 | 2 | 16 | 395 | 6 | 393 | 5.21e-171 | 483 |
| MS.gene010973.t1 | MTR_3g101010 | 62.500 | 392 | 133 | 3 | 14 | 396 | 3 | 389 | 4.13e-165 | 468 |
| MS.gene010973.t1 | MTR_4g045707 | 60.204 | 392 | 138 | 4 | 15 | 396 | 5 | 388 | 2.14e-161 | 459 |
| MS.gene010973.t1 | MTR_3g101130 | 60.969 | 392 | 136 | 5 | 15 | 396 | 5 | 389 | 7.23e-161 | 457 |
| MS.gene010973.t1 | MTR_3g018740 | 60.969 | 392 | 136 | 4 | 14 | 395 | 3 | 387 | 5.02e-160 | 455 |
| MS.gene010973.t1 | MTR_8g027395 | 57.673 | 404 | 151 | 5 | 4 | 396 | 3 | 397 | 6.27e-156 | 445 |
| MS.gene010973.t1 | MTR_3g048000 | 57.740 | 407 | 130 | 7 | 4 | 394 | 10 | 390 | 9.74e-154 | 439 |
| MS.gene010973.t1 | MTR_3g101030 | 55.501 | 409 | 150 | 5 | 15 | 396 | 26 | 429 | 1.32e-148 | 428 |
| MS.gene010973.t1 | MTR_4g088525 | 58.424 | 368 | 137 | 2 | 36 | 394 | 7 | 367 | 9.36e-146 | 418 |
| MS.gene010973.t1 | MTR_8g027420 | 55.357 | 392 | 146 | 5 | 14 | 396 | 4 | 375 | 7.86e-141 | 406 |
| MS.gene010973.t1 | MTR_2g045980 | 54.430 | 395 | 157 | 5 | 14 | 395 | 3 | 387 | 5.64e-140 | 404 |
| MS.gene010973.t1 | MTR_2g046030 | 54.177 | 395 | 158 | 5 | 14 | 395 | 3 | 387 | 1.89e-139 | 403 |
| MS.gene010973.t1 | MTR_3g101050 | 55.928 | 388 | 134 | 7 | 20 | 394 | 33 | 396 | 2.61e-133 | 388 |
| MS.gene010973.t1 | MTR_3g015620 | 52.736 | 402 | 160 | 3 | 1 | 395 | 1 | 379 | 5.68e-133 | 386 |
| MS.gene010973.t1 | MTR_4g088535 | 55.181 | 386 | 139 | 5 | 15 | 391 | 6 | 366 | 6.23e-131 | 381 |
| MS.gene010973.t1 | MTR_3g102920 | 51.463 | 410 | 140 | 8 | 3 | 394 | 40 | 408 | 1.93e-128 | 376 |
| MS.gene010973.t1 | MTR_3g101200 | 52.897 | 397 | 148 | 8 | 8 | 394 | 23 | 390 | 5.44e-126 | 369 |
| MS.gene010973.t1 | MTR_3g101190 | 51.467 | 375 | 107 | 4 | 31 | 396 | 4 | 312 | 3.92e-123 | 358 |
| MS.gene010973.t1 | MTR_3g100995 | 60.700 | 257 | 86 | 4 | 149 | 396 | 14 | 264 | 9.11e-106 | 313 |
| MS.gene010973.t1 | MTR_3g100010 | 53.214 | 280 | 98 | 1 | 38 | 284 | 37 | 316 | 7.79e-95 | 288 |
| MS.gene010973.t1 | MTR_3g018747 | 59.091 | 264 | 80 | 5 | 142 | 395 | 9 | 254 | 1.70e-94 | 283 |
| MS.gene010973.t1 | MTR_3g015760 | 58.333 | 264 | 94 | 3 | 142 | 395 | 23 | 280 | 1.56e-90 | 274 |
| MS.gene010973.t1 | MTR_3g111160 | 58.407 | 226 | 76 | 5 | 183 | 396 | 1 | 220 | 4.53e-77 | 238 |
| MS.gene010973.t1 | MTR_3g114310 | 39.633 | 381 | 198 | 11 | 40 | 396 | 38 | 410 | 1.39e-76 | 243 |
| MS.gene010973.t1 | MTR_3g101110 | 55.462 | 238 | 66 | 5 | 145 | 370 | 71 | 280 | 1.35e-72 | 228 |
| MS.gene010973.t1 | MTR_3g100520 | 54.667 | 225 | 75 | 4 | 183 | 396 | 1 | 209 | 3.40e-72 | 225 |
| MS.gene010973.t1 | MTR_3g099970 | 57.653 | 196 | 57 | 3 | 142 | 328 | 20 | 198 | 8.33e-67 | 211 |
| MS.gene010973.t1 | MTR_2g046410 | 52.857 | 210 | 81 | 3 | 199 | 395 | 144 | 348 | 1.82e-66 | 215 |
| MS.gene010973.t1 | MTR_3g101150 | 62.658 | 158 | 47 | 3 | 248 | 394 | 1 | 157 | 1.39e-60 | 193 |
| MS.gene010973.t1 | MTR_3g101020 | 53.039 | 181 | 64 | 4 | 216 | 396 | 1 | 160 | 1.04e-54 | 178 |
| MS.gene010973.t1 | MTR_3g111150 | 52.514 | 179 | 59 | 2 | 18 | 196 | 1 | 153 | 1.08e-53 | 176 |
| MS.gene010973.t1 | MTR_3g102870 | 55.063 | 158 | 61 | 2 | 205 | 353 | 1 | 157 | 2.10e-49 | 165 |
| MS.gene010973.t1 | MTR_3g100990 | 59.375 | 128 | 50 | 1 | 15 | 142 | 4 | 129 | 6.43e-39 | 146 |
| MS.gene010973.t1 | MTR_3g101140 | 64.789 | 71 | 23 | 2 | 326 | 396 | 48 | 116 | 3.64e-21 | 88.6 |
| MS.gene010973.t1 | MTR_4g093550 | 53.409 | 88 | 39 | 1 | 14 | 101 | 4 | 89 | 1.07e-19 | 83.6 |
| MS.gene010973.t1 | MTR_6g046890 | 57.377 | 61 | 26 | 0 | 39 | 99 | 20 | 80 | 1.11e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010973.t1 | AT1G47710 | 50.000 | 394 | 178 | 5 | 14 | 394 | 3 | 390 | 8.49e-132 | 384 |
| MS.gene010973.t1 | AT1G47710 | 49.261 | 406 | 184 | 6 | 2 | 394 | 21 | 417 | 2.27e-131 | 384 |
| MS.gene010973.t1 | AT2G26390 | 44.670 | 394 | 190 | 6 | 16 | 393 | 5 | 386 | 3.51e-112 | 333 |
| MS.gene010973.t1 | AT1G62170 | 46.770 | 387 | 180 | 7 | 14 | 393 | 64 | 431 | 1.09e-109 | 329 |
| MS.gene010973.t1 | AT2G25240 | 45.524 | 391 | 187 | 8 | 16 | 393 | 5 | 382 | 2.16e-109 | 326 |
| MS.gene010973.t1 | AT3G45220 | 42.929 | 396 | 198 | 6 | 16 | 393 | 5 | 390 | 8.44e-109 | 325 |
| MS.gene010973.t1 | AT1G64030 | 43.864 | 383 | 198 | 5 | 14 | 393 | 3 | 371 | 2.44e-105 | 316 |
| MS.gene010973.t1 | AT2G14540 | 45.408 | 392 | 195 | 6 | 5 | 393 | 22 | 397 | 1.34e-102 | 310 |
| MS.gene010973.t1 | AT1G62170 | 43.095 | 420 | 180 | 8 | 14 | 393 | 64 | 464 | 2.88e-102 | 311 |
| MS.gene010973.t1 | AT2G35580 | 45.604 | 364 | 174 | 10 | 39 | 393 | 23 | 371 | 2.01e-97 | 295 |
| MS.gene010973.t1 | AT1G64010 | 47.170 | 212 | 94 | 3 | 183 | 393 | 1 | 195 | 2.90e-62 | 199 |
| MS.gene010973.t1 | AT1G64010 | 47.716 | 197 | 85 | 3 | 198 | 393 | 2 | 181 | 1.96e-55 | 181 |
| MS.gene010973.t1 | AT1G63280 | 55.085 | 118 | 49 | 2 | 139 | 254 | 5 | 120 | 2.27e-34 | 124 |
| MS.gene010973.t1 | AT1G62160 | 45.714 | 175 | 74 | 5 | 222 | 393 | 62 | 218 | 1.15e-32 | 122 |
| MS.gene010973.t1 | AT1G51330 | 51.786 | 112 | 51 | 3 | 140 | 248 | 29 | 140 | 7.64e-25 | 100 |
| MS.gene010973.t1 | AT1G64020 | 35.294 | 119 | 74 | 3 | 15 | 132 | 4 | 120 | 2.17e-15 | 72.4 |
Find 88 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGAAGAAGTGAATTTA+TGG | 0.141848 | 7.1:+51077456 | MS.gene010973:CDS |
| TCTGAGTTGCTAAAGAAATT+AGG | 0.197225 | 7.1:+51077920 | MS.gene010973:CDS |
| GCTAATGCTCTATACTTAAA+AGG | 0.220053 | 7.1:+51077557 | MS.gene010973:CDS |
| ACATAAAGTTCTTGACTTAT+AGG | 0.247103 | 7.1:-51077965 | None:intergenic |
| AGCTTCTGATTCTGAGTTCT+TGG | 0.256911 | 7.1:+51077817 | MS.gene010973:CDS |
| ATCATTCTTGCTGGTCATAA+AGG | 0.270660 | 7.1:-51077660 | None:intergenic |
| TTCATTGAAGTAAATGAAAA+AGG | 0.303314 | 7.1:+51078010 | MS.gene010973:CDS |
| TTTGATGATTTCAAAGTCCT+TGG | 0.358157 | 7.1:+51077698 | MS.gene010973:CDS |
| AAGCTGGTCAATCCTCTTGA+TGG | 0.403313 | 7.1:+51078184 | MS.gene010973:CDS |
| CAGCTTCCCAACAAAGAGTA+TGG | 0.405756 | 7.1:-51078167 | None:intergenic |
| GAGAGAAGAAGTGAATTTAT+GGG | 0.413933 | 7.1:+51077457 | MS.gene010973:CDS |
| AGCACGGTGTTAAGCGATAA+TGG | 0.414400 | 7.1:-51076108 | None:intergenic |
| GCTTAACACCGTGCTCAGTA+TGG | 0.421884 | 7.1:+51076116 | MS.gene010973:CDS |
| GCCTACTTCCACTTCTTCAC+GGG | 0.426079 | 7.1:-51077852 | None:intergenic |
| TCAAAAGAAATATTGAATCT+TGG | 0.427509 | 7.1:-51077887 | None:intergenic |
| AGTGGAACCATACTCTTTGT+TGG | 0.428152 | 7.1:+51078160 | MS.gene010973:CDS |
| GATAAACTGATCATTCTTGC+TGG | 0.430849 | 7.1:-51077669 | None:intergenic |
| CTCTCCGATGGCGCTCCCGC+AGG | 0.433004 | 7.1:+51076246 | MS.gene010973:CDS |
| AGTAGTCATAAGTTGTTTGA+AGG | 0.434567 | 7.1:-51076331 | None:intergenic |
| GTCATAAGTTGTTTGAAGGA+AGG | 0.435473 | 7.1:-51076327 | None:intergenic |
| AGAAACAACCTGAGAGCATA+AGG | 0.435581 | 7.1:-51076217 | None:intergenic |
| CCTTATAAACAAGGAAAAGA+TGG | 0.438964 | 7.1:+51077725 | MS.gene010973:CDS |
| AGTGAATTTATGGGCTGAAA+AGG | 0.440578 | 7.1:+51077466 | MS.gene010973:CDS |
| CATACTCTTTGTTGGGAAGC+TGG | 0.441699 | 7.1:+51078168 | MS.gene010973:CDS |
| GTGGAACCATACTCTTTGTT+GGG | 0.448084 | 7.1:+51078161 | MS.gene010973:CDS |
| GTTGTCAGCTTTGATTGATA+AGG | 0.451106 | 7.1:+51077793 | MS.gene010973:CDS |
| TGCCTACTTCCACTTCTTCA+CGG | 0.452299 | 7.1:-51077853 | None:intergenic |
| CTGTGTGGGACCCTCGGAGC+CGG | 0.454082 | 7.1:-51076145 | None:intergenic |
| GTCTTACGTCCATGGTGTGT+GGG | 0.461955 | 7.1:+51076281 | MS.gene010973:CDS |
| CTGTTGCTGTGTGGGACCCT+CGG | 0.464906 | 7.1:-51076151 | None:intergenic |
| CCTTGCTTGTCTTACGTCCA+TGG | 0.465180 | 7.1:+51076273 | MS.gene010973:CDS |
| TTGATCGGATAGCAAGTGTT+TGG | 0.466186 | 7.1:-51076055 | None:intergenic |
| GTTTCTTCTGTGCTCTCCGA+TGG | 0.466953 | 7.1:+51076234 | MS.gene010973:CDS |
| TGGGCTGAAAAGGAGACAAA+AGG | 0.472940 | 7.1:+51077476 | MS.gene010973:CDS |
| TCATTCTTGCTGGTCATAAA+GGG | 0.472999 | 7.1:-51077659 | None:intergenic |
| CAGAGAAACGTTGGTAAGGT+TGG | 0.478510 | 7.1:-51076025 | None:intergenic |
| TCCGATGGCGCTCCCGCAGG+TGG | 0.480492 | 7.1:+51076249 | MS.gene010973:CDS |
| ATGGTCGCTGCCGGCTCCGA+GGG | 0.486082 | 7.1:+51076135 | MS.gene010973:CDS |
| TCCACCTGCGGGAGCGCCAT+CGG | 0.492168 | 7.1:-51076250 | None:intergenic |
| TCGATTGGAGGTACCGGAGG+GGG | 0.493984 | 7.1:-51078091 | None:intergenic |
| ACAGCCCGTAGCATGGTAGC+CGG | 0.494009 | 7.1:+51078052 | MS.gene010973:CDS |
| GAAACACTTCTGAAATATGT+TGG | 0.498816 | 7.1:-51077990 | None:intergenic |
| TCTCAAATCCTTATGCTCTC+AGG | 0.500474 | 7.1:+51076209 | MS.gene010973:CDS |
| CACACCCGGCTACCATGCTA+CGG | 0.502912 | 7.1:-51078057 | None:intergenic |
| AGCTGGTCAATCCTCTTGAT+GGG | 0.511432 | 7.1:+51078185 | MS.gene010973:CDS |
| AAGCTGTGAACTGACCCGTT+TGG | 0.519881 | 7.1:-51077518 | None:intergenic |
| CTTGGTCTTCCTTATAAACA+AGG | 0.520282 | 7.1:+51077716 | MS.gene010973:CDS |
| CTTATAAACAAGGAAAAGAT+GGG | 0.522433 | 7.1:+51077726 | MS.gene010973:CDS |
| GAATCTTCCCCGTGAAGAAG+TGG | 0.522849 | 7.1:+51077844 | MS.gene010973:CDS |
| CAGCCCGTAGCATGGTAGCC+GGG | 0.533015 | 7.1:+51078053 | MS.gene010973:CDS |
| GACAAGCAAGGTCCACCTGC+GGG | 0.533660 | 7.1:-51076261 | None:intergenic |
| GTGCTCAGTATGGTCGCTGC+CGG | 0.535894 | 7.1:+51076126 | MS.gene010973:CDS |
| GGGCTGAAAAGGAGACAAAA+GGG | 0.540477 | 7.1:+51077477 | MS.gene010973:CDS |
| TATGGTCGCTGCCGGCTCCG+AGG | 0.548883 | 7.1:+51076134 | MS.gene010973:CDS |
| TCTCAATGGCAAGTCAGTAA+AGG | 0.555621 | 7.1:+51077634 | MS.gene010973:CDS |
| TGTCTTACGTCCATGGTGTG+TGG | 0.557930 | 7.1:+51076280 | MS.gene010973:CDS |
| ACAAAGTCGATTGGAGGTAC+CGG | 0.558153 | 7.1:-51078097 | None:intergenic |
| GAGAGAAGCTGTTGCTGTGT+GGG | 0.564931 | 7.1:-51076159 | None:intergenic |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.569665 | 7.1:-51076318 | None:intergenic |
| CTCTATACTTAAAAGGAGTG+TGG | 0.569909 | 7.1:+51077564 | MS.gene010973:CDS |
| TTCAACAATCACCCATCAAG+AGG | 0.572973 | 7.1:-51078196 | None:intergenic |
| AGTCGATTGGAGGTACCGGA+GGG | 0.578052 | 7.1:-51078093 | None:intergenic |
| GGGTCTATACGGAGCACACC+CGG | 0.580305 | 7.1:-51078071 | None:intergenic |
| TGCAGTTGATTTCGTCAACA+AGG | 0.581408 | 7.1:+51076374 | MS.gene010973:CDS |
| TTACTGACTTGCCATTGAGA+AGG | 0.583004 | 7.1:-51077631 | None:intergenic |
| TGGTCAGCTACAAAGTCGAT+TGG | 0.583969 | 7.1:-51078106 | None:intergenic |
| ACACCCGGCTACCATGCTAC+GGG | 0.584521 | 7.1:-51078056 | None:intergenic |
| GGTGATGTTCAGAGAAACGT+TGG | 0.584758 | 7.1:-51076034 | None:intergenic |
| TGTTCAGAGAAACGTTGGTA+AGG | 0.586578 | 7.1:-51076029 | None:intergenic |
| AGCATTAGCAAAGATGAGGC+TGG | 0.589759 | 7.1:-51077543 | None:intergenic |
| GCATAAGGATTTGAGATCAT+CGG | 0.590361 | 7.1:-51076202 | None:intergenic |
| GATCATCGGTGGATTCAGAC+TGG | 0.590926 | 7.1:-51076188 | None:intergenic |
| AAGTCGATTGGAGGTACCGG+AGG | 0.593494 | 7.1:-51078094 | None:intergenic |
| TAAGGATTTGAGATCATCGG+TGG | 0.605792 | 7.1:-51076199 | None:intergenic |
| CTTGTTTATAAGGAAGACCA+AGG | 0.608271 | 7.1:-51077715 | None:intergenic |
| CCCCGTGAAGAAGTGGAAGT+AGG | 0.610736 | 7.1:+51077851 | MS.gene010973:CDS |
| AGCAGTGACAGCCCGTAGCA+TGG | 0.613172 | 7.1:+51078045 | MS.gene010973:CDS |
| GTCGATTGGAGGTACCGGAG+GGG | 0.613526 | 7.1:-51078092 | None:intergenic |
| GGTGGATTCAGACTGGAGGA+AGG | 0.614881 | 7.1:-51076181 | None:intergenic |
| TCAGCTACAAAGTCGATTGG+AGG | 0.618715 | 7.1:-51078103 | None:intergenic |
| ATAGAGCATTAGCAAAGATG+AGG | 0.629223 | 7.1:-51077547 | None:intergenic |
| ATTGTTCAACCCACACACCA+TGG | 0.645482 | 7.1:-51076290 | None:intergenic |
| CCTACTTCCACTTCTTCACG+GGG | 0.668304 | 7.1:-51077851 | None:intergenic |
| GGCAGCGACCATACTGAGCA+CGG | 0.668745 | 7.1:-51076124 | None:intergenic |
| AGACAAGCAAGGTCCACCTG+CGG | 0.672030 | 7.1:-51076262 | None:intergenic |
| GGAGAGAAGCTGTTGCTGTG+TGG | 0.672647 | 7.1:-51076160 | None:intergenic |
| CATCGGTGGATTCAGACTGG+AGG | 0.684443 | 7.1:-51076185 | None:intergenic |
| CCATGGACGTAAGACAAGCA+AGG | 0.690316 | 7.1:-51076273 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTAAATTTTTCTGTT+TGG | - | chr7.1:51076843-51076862 | None:intergenic | 10.0% |
| !!! | TCAAATGATTTATTTTAACA+TGG | + | chr7.1:51077405-51077424 | MS.gene010973:intron | 15.0% |
| !! | ATTAAAAATCTTCTTCCAAA+CGG | + | chr7.1:51077503-51077522 | MS.gene010973:CDS | 20.0% |
| !! | ATTAATTGGTTAAAGAGTTA+GGG | + | chr7.1:51076686-51076705 | MS.gene010973:intron | 20.0% |
| !! | ATTTAATACTTCAAAAACGA+AGG | + | chr7.1:51077595-51077614 | MS.gene010973:CDS | 20.0% |
| !! | TCAAAAGAAATATTGAATCT+TGG | - | chr7.1:51077890-51077909 | None:intergenic | 20.0% |
| !! | TCAAAAGTCACATTATTAAT+TGG | - | chr7.1:51077087-51077106 | None:intergenic | 20.0% |
| !! | TCTCATTAGATTTAACATAA+TGG | - | chr7.1:51076587-51076606 | None:intergenic | 20.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | + | chr7.1:51078010-51078029 | MS.gene010973:CDS | 20.0% |
| !! | TTCTCAATTTCTTGATTAAT+TGG | + | chr7.1:51076672-51076691 | MS.gene010973:intron | 20.0% |
| ! | ACATAAAGTTCTTGACTTAT+AGG | - | chr7.1:51077968-51077987 | None:intergenic | 25.0% |
| ! | ATGGTTTGATATTGATATGA+AGG | + | chr7.1:51077424-51077443 | MS.gene010973:intron | 25.0% |
| ! | CATAAACAACTCACAAATTA+GGG | + | chr7.1:51076417-51076436 | MS.gene010973:intron | 25.0% |
| ! | CTCTGATCAGAAATAAAAAA+GGG | - | chr7.1:51078132-51078151 | None:intergenic | 25.0% |
| ! | CTTATAAACAAGGAAAAGAT+GGG | + | chr7.1:51077726-51077745 | MS.gene010973:CDS | 25.0% |
| ! | GAAATTAGGTTTGACAAAAA+TGG | + | chr7.1:51077934-51077953 | MS.gene010973:CDS | 25.0% |
| ! | GATTAATTGGTTAAAGAGTT+AGG | + | chr7.1:51076685-51076704 | MS.gene010973:intron | 25.0% |
| ! | TAATCAAGAAATTGAGAAAG+AGG | - | chr7.1:51076670-51076689 | None:intergenic | 25.0% |
| ! | TCATAAACAACTCACAAATT+AGG | + | chr7.1:51076416-51076435 | MS.gene010973:intron | 25.0% |
| ! | TCTCTGATCAGAAATAAAAA+AGG | - | chr7.1:51078133-51078152 | None:intergenic | 25.0% |
| ! | TGTTGATATTATTGCACATA+TGG | - | chr7.1:51077346-51077365 | None:intergenic | 25.0% |
| ! | TTAAAAATCTTCTTCCAAAC+GGG | + | chr7.1:51077504-51077523 | MS.gene010973:CDS | 25.0% |
| ! | TTGTATTCAAAATGAGTCAA+AGG | - | chr7.1:51077255-51077274 | None:intergenic | 25.0% |
| !! | AAGAATGAAGATTGATAGTT+AGG | - | chr7.1:51076722-51076741 | None:intergenic | 25.0% |
| !! | CTTTTCATTGAGTTTTTGAT+CGG | - | chr7.1:51076073-51076092 | None:intergenic | 25.0% |
| !!! | ACAAGTTTGTTTTTCACAAT+TGG | - | chr7.1:51077027-51077046 | None:intergenic | 25.0% |
| !!! | TACAAGTTAGTTTTCATTGT+TGG | + | chr7.1:51076950-51076969 | MS.gene010973:intron | 25.0% |
| !!! | TTTGCTCTTTTTCTTTTTTG+AGG | - | chr7.1:51075979-51075998 | None:intergenic | 25.0% |
| AGGTTTGATGTCACAAAAAA+TGG | - | chr7.1:51077235-51077254 | None:intergenic | 30.0% | |
| AGTAGTCATAAGTTGTTTGA+AGG | - | chr7.1:51076334-51076353 | None:intergenic | 30.0% | |
| ATTAGGTTTGACAAAAATGG+TGG | + | chr7.1:51077937-51077956 | MS.gene010973:CDS | 30.0% | |
| CCTTATAAACAAGGAAAAGA+TGG | + | chr7.1:51077725-51077744 | MS.gene010973:CDS | 30.0% | |
| GAGAGAAGAAGTGAATTTAT+GGG | + | chr7.1:51077457-51077476 | MS.gene010973:CDS | 30.0% | |
| GCTAATGCTCTATACTTAAA+AGG | + | chr7.1:51077557-51077576 | MS.gene010973:CDS | 30.0% | |
| GGATCAATAAATCTCACTAT+TGG | + | chr7.1:51076971-51076990 | MS.gene010973:intron | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | + | chr7.1:51077920-51077939 | MS.gene010973:CDS | 30.0% | |
| TGAGAGAAGAAGTGAATTTA+TGG | + | chr7.1:51077456-51077475 | MS.gene010973:CDS | 30.0% | |
| TGATCAGAAATAAAAAAGGG+TGG | - | chr7.1:51078129-51078148 | None:intergenic | 30.0% | |
| ! | AAACTAACTTGTACATCATG+CGG | - | chr7.1:51076943-51076962 | None:intergenic | 30.0% |
| ! | ACTTACAGTTTTCAAACAAG+TGG | - | chr7.1:51077118-51077137 | None:intergenic | 30.0% |
| ! | TTCATTTTGCATACGACATA+AGG | + | chr7.1:51076916-51076935 | MS.gene010973:intron | 30.0% |
| ! | TTTGATGATTTCAAAGTCCT+TGG | + | chr7.1:51077698-51077717 | MS.gene010973:CDS | 30.0% |
| !! | CCATCTTTTCCTTGTTTATA+AGG | - | chr7.1:51077728-51077747 | None:intergenic | 30.0% |
| !! | GAAACACTTCTGAAATATGT+TGG | - | chr7.1:51077993-51078012 | None:intergenic | 30.0% |
| !! | GAAACATGAGTTGATTGTAA+AGG | - | chr7.1:51076779-51076798 | None:intergenic | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | + | chr7.1:51077620-51077639 | MS.gene010973:CDS | 30.0% |
| !!! | TGTCGATATTTTTTTTTGCG+TGG | + | chr7.1:51076452-51076471 | MS.gene010973:intron | 30.0% |
| AACTCACAAATTAGGGTTTG+AGG | + | chr7.1:51076424-51076443 | MS.gene010973:intron | 35.0% | |
| ATCATTCTTGCTGGTCATAA+AGG | - | chr7.1:51077663-51077682 | None:intergenic | 35.0% | |
| CGTAAGTTAGTGACATAGTT+AGG | - | chr7.1:51076624-51076643 | None:intergenic | 35.0% | |
| CTCTATACTTAAAAGGAGTG+TGG | + | chr7.1:51077564-51077583 | MS.gene010973:CDS | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | - | chr7.1:51077718-51077737 | None:intergenic | 35.0% | |
| GATAAACTGATCATTCTTGC+TGG | - | chr7.1:51077672-51077691 | None:intergenic | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | - | chr7.1:51076330-51076349 | None:intergenic | 35.0% | |
| TCATTCTTGCTGGTCATAAA+GGG | - | chr7.1:51077662-51077681 | None:intergenic | 35.0% | |
| TCGTATGCAAAATGAAAGCA+TGG | - | chr7.1:51076912-51076931 | None:intergenic | 35.0% | |
| TTCTTCCTGACGAAAAAGAT+GGG | + | chr7.1:51077771-51077790 | MS.gene010973:CDS | 35.0% | |
| TTTCTTCCTGACGAAAAAGA+TGG | + | chr7.1:51077770-51077789 | MS.gene010973:CDS | 35.0% | |
| ! | AGTGAATTTATGGGCTGAAA+AGG | + | chr7.1:51077466-51077485 | MS.gene010973:CDS | 35.0% |
| ! | ATAGAGCATTAGCAAAGATG+AGG | - | chr7.1:51077550-51077569 | None:intergenic | 35.0% |
| ! | CTGATCAGAGAAGATTTTAG+TGG | + | chr7.1:51078142-51078161 | MS.gene010973:CDS | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | + | chr7.1:51077716-51077735 | MS.gene010973:CDS | 35.0% |
| ! | GCAAAATGAAAGCATGGAAA+GGG | - | chr7.1:51076906-51076925 | None:intergenic | 35.0% |
| ! | GCATAAGGATTTGAGATCAT+CGG | - | chr7.1:51076205-51076224 | None:intergenic | 35.0% |
| ! | GTTGTCAGCTTTGATTGATA+AGG | + | chr7.1:51077793-51077812 | MS.gene010973:CDS | 35.0% |
| ! | TGCAAAATGAAAGCATGGAA+AGG | - | chr7.1:51076907-51076926 | None:intergenic | 35.0% |
| ! | TTAGTGACATAGTTAGGTTG+AGG | - | chr7.1:51076618-51076637 | None:intergenic | 35.0% |
| !! | CATAATGGATCATCCTATCA+TGG | - | chr7.1:51076572-51076591 | None:intergenic | 35.0% |
| !! | TAGTGACATAGTTAGGTTGA+GGG | - | chr7.1:51076617-51076636 | None:intergenic | 35.0% |
| !!! | GCTCTTTTTCTTTTTTGAGG+AGG | - | chr7.1:51075976-51075995 | None:intergenic | 35.0% |
| ACAAACTTGTGCATAGTGCA+TGG | + | chr7.1:51077037-51077056 | MS.gene010973:intron | 40.0% | |
| AGCTTCTGATTCTGAGTTCT+TGG | + | chr7.1:51077817-51077836 | MS.gene010973:CDS | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | + | chr7.1:51078160-51078179 | MS.gene010973:CDS | 40.0% | |
| CAGCTAATTGGCAAGACATT+AGG | - | chr7.1:51077311-51077330 | None:intergenic | 40.0% | |
| CTAATGTCTTGCCAATTAGC+TGG | + | chr7.1:51077309-51077328 | MS.gene010973:intron | 40.0% | |
| CTATATACCAGAAAGATCGC+AGG | + | chr7.1:51076869-51076888 | MS.gene010973:intron | 40.0% | |
| GTGGAACCATACTCTTTGTT+GGG | + | chr7.1:51078161-51078180 | MS.gene010973:CDS | 40.0% | |
| TCTCAAATCCTTATGCTCTC+AGG | + | chr7.1:51076209-51076228 | MS.gene010973:CDS | 40.0% | |
| TCTCAATGGCAAGTCAGTAA+AGG | + | chr7.1:51077634-51077653 | MS.gene010973:CDS | 40.0% | |
| TGTTCAGAGAAACGTTGGTA+AGG | - | chr7.1:51076032-51076051 | None:intergenic | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | - | chr7.1:51076321-51076340 | None:intergenic | 40.0% | |
| TTGATCGGATAGCAAGTGTT+TGG | - | chr7.1:51076058-51076077 | None:intergenic | 40.0% | |
| ! | AGAAACAACCTGAGAGCATA+AGG | - | chr7.1:51076220-51076239 | None:intergenic | 40.0% |
| ! | GCTTTTGAACAGACCATGAT+AGG | + | chr7.1:51076556-51076575 | MS.gene010973:intron | 40.0% |
| ! | TAAGGATTTGAGATCATCGG+TGG | - | chr7.1:51076202-51076221 | None:intergenic | 40.0% |
| ! | TGCAGTTGATTTCGTCAACA+AGG | + | chr7.1:51076374-51076393 | MS.gene010973:CDS | 40.0% |
| !! | TTACTGACTTGCCATTGAGA+AGG | - | chr7.1:51077634-51077653 | None:intergenic | 40.0% |
| AAGCTGGTCAATCCTCTTGA+TGG | + | chr7.1:51078184-51078203 | MS.gene010973:CDS | 45.0% | |
| AGACAGCCTATCCAGCTAAT+TGG | - | chr7.1:51077323-51077342 | None:intergenic | 45.0% | |
| AGCATTAGCAAAGATGAGGC+TGG | - | chr7.1:51077546-51077565 | None:intergenic | 45.0% | |
| AGCTGGTCAATCCTCTTGAT+GGG | + | chr7.1:51078185-51078204 | MS.gene010973:CDS | 45.0% | |
| ATTGTTCAACCCACACACCA+TGG | - | chr7.1:51076293-51076312 | None:intergenic | 45.0% | |
| CAGCTTCCCAACAAAGAGTA+TGG | - | chr7.1:51078170-51078189 | None:intergenic | 45.0% | |
| CATACTCTTTGTTGGGAAGC+TGG | + | chr7.1:51078168-51078187 | MS.gene010973:CDS | 45.0% | |
| GGGCTGAAAAGGAGACAAAA+GGG | + | chr7.1:51077477-51077496 | MS.gene010973:CDS | 45.0% | |
| GGTGATGTTCAGAGAAACGT+TGG | - | chr7.1:51076037-51076056 | None:intergenic | 45.0% | |
| GTCTTGCCAATTAGCTGGAT+AGG | + | chr7.1:51077314-51077333 | MS.gene010973:intron | 45.0% | |
| TCAGCTACAAAGTCGATTGG+AGG | - | chr7.1:51078106-51078125 | None:intergenic | 45.0% | |
| TGCCTACTTCCACTTCTTCA+CGG | - | chr7.1:51077856-51077875 | None:intergenic | 45.0% | |
| TGGGCTGAAAAGGAGACAAA+AGG | + | chr7.1:51077476-51077495 | MS.gene010973:CDS | 45.0% | |
| TGGTCAGCTACAAAGTCGAT+TGG | - | chr7.1:51078109-51078128 | None:intergenic | 45.0% | |
| ! | ACAAAGTCGATTGGAGGTAC+CGG | - | chr7.1:51078100-51078119 | None:intergenic | 45.0% |
| ! | AGCACGGTGTTAAGCGATAA+TGG | - | chr7.1:51076111-51076130 | None:intergenic | 45.0% |
| ! | CAGAGAAACGTTGGTAAGGT+TGG | - | chr7.1:51076028-51076047 | None:intergenic | 45.0% |
| !! | GACAACCCATCTTTTTCGTC+AGG | - | chr7.1:51077779-51077798 | None:intergenic | 45.0% |
| AAGCTGTGAACTGACCCGTT+TGG | - | chr7.1:51077521-51077540 | None:intergenic | 50.0% | |
| CCATGGACGTAAGACAAGCA+AGG | - | chr7.1:51076276-51076295 | None:intergenic | 50.0% | |
| CCTACTTCCACTTCTTCACG+GGG | - | chr7.1:51077854-51077873 | None:intergenic | 50.0% | |
| CCTTGCTTGTCTTACGTCCA+TGG | + | chr7.1:51076273-51076292 | MS.gene010973:CDS | 50.0% | |
| GAATCTTCCCCGTGAAGAAG+TGG | + | chr7.1:51077844-51077863 | MS.gene010973:CDS | 50.0% | |
| GAGAGAAGCTGTTGCTGTGT+GGG | - | chr7.1:51076162-51076181 | None:intergenic | 50.0% | |
| GCCTACTTCCACTTCTTCAC+GGG | - | chr7.1:51077855-51077874 | None:intergenic | 50.0% | |
| GCTTAACACCGTGCTCAGTA+TGG | + | chr7.1:51076116-51076135 | MS.gene010973:CDS | 50.0% | |
| GTCTGAACCTGCGATCTTTC+TGG | - | chr7.1:51076879-51076898 | None:intergenic | 50.0% | |
| GTCTTACGTCCATGGTGTGT+GGG | + | chr7.1:51076281-51076300 | MS.gene010973:CDS | 50.0% | |
| GTTTCTTCTGTGCTCTCCGA+TGG | + | chr7.1:51076234-51076253 | MS.gene010973:CDS | 50.0% | |
| TGTCTTACGTCCATGGTGTG+TGG | + | chr7.1:51076280-51076299 | MS.gene010973:CDS | 50.0% | |
| ! | GATCATCGGTGGATTCAGAC+TGG | - | chr7.1:51076191-51076210 | None:intergenic | 50.0% |
| AGACAAGCAAGGTCCACCTG+CGG | - | chr7.1:51076265-51076284 | None:intergenic | 55.0% | |
| CCCCGTGAAGAAGTGGAAGT+AGG | + | chr7.1:51077851-51077870 | MS.gene010973:CDS | 55.0% | |
| GGAGAGAAGCTGTTGCTGTG+TGG | - | chr7.1:51076163-51076182 | None:intergenic | 55.0% | |
| ! | CATCGGTGGATTCAGACTGG+AGG | - | chr7.1:51076188-51076207 | None:intergenic | 55.0% |
| ! | GGTGGATTCAGACTGGAGGA+AGG | - | chr7.1:51076184-51076203 | None:intergenic | 55.0% |
| !! | AAGTCGATTGGAGGTACCGG+AGG | - | chr7.1:51078097-51078116 | None:intergenic | 55.0% |
| !! | AGTCGATTGGAGGTACCGGA+GGG | - | chr7.1:51078096-51078115 | None:intergenic | 55.0% |
| ACACCCGGCTACCATGCTAC+GGG | - | chr7.1:51078059-51078078 | None:intergenic | 60.0% | |
| ACAGCCCGTAGCATGGTAGC+CGG | + | chr7.1:51078052-51078071 | MS.gene010973:CDS | 60.0% | |
| AGCAGTGACAGCCCGTAGCA+TGG | + | chr7.1:51078045-51078064 | MS.gene010973:CDS | 60.0% | |
| CACACCCGGCTACCATGCTA+CGG | - | chr7.1:51078060-51078079 | None:intergenic | 60.0% | |
| CTGTTGCTGTGTGGGACCCT+CGG | - | chr7.1:51076154-51076173 | None:intergenic | 60.0% | |
| GACAAGCAAGGTCCACCTGC+GGG | - | chr7.1:51076264-51076283 | None:intergenic | 60.0% | |
| GGCAGCGACCATACTGAGCA+CGG | - | chr7.1:51076127-51076146 | None:intergenic | 60.0% | |
| GGGTCTATACGGAGCACACC+CGG | - | chr7.1:51078074-51078093 | None:intergenic | 60.0% | |
| GTGCTCAGTATGGTCGCTGC+CGG | + | chr7.1:51076126-51076145 | MS.gene010973:CDS | 60.0% | |
| TGCTCCGTATAGACCCCCTC+CGG | + | chr7.1:51078078-51078097 | MS.gene010973:CDS | 60.0% | |
| ! | GGTACCGGAGGGGGTCTATA+CGG | - | chr7.1:51078085-51078104 | None:intergenic | 60.0% |
| !! | GTCGATTGGAGGTACCGGAG+GGG | - | chr7.1:51078095-51078114 | None:intergenic | 60.0% |
| !! | TCGATTGGAGGTACCGGAGG+GGG | - | chr7.1:51078094-51078113 | None:intergenic | 60.0% |
| CAGCCCGTAGCATGGTAGCC+GGG | + | chr7.1:51078053-51078072 | MS.gene010973:CDS | 65.0% | |
| CTGTGTGGGACCCTCGGAGC+CGG | - | chr7.1:51076148-51076167 | None:intergenic | 70.0% | |
| !! | ATGGTCGCTGCCGGCTCCGA+GGG | + | chr7.1:51076135-51076154 | MS.gene010973:CDS | 70.0% |
| !! | TATGGTCGCTGCCGGCTCCG+AGG | + | chr7.1:51076134-51076153 | MS.gene010973:CDS | 70.0% |
| !! | TCCACCTGCGGGAGCGCCAT+CGG | - | chr7.1:51076253-51076272 | None:intergenic | 70.0% |
| CTCTCCGATGGCGCTCCCGC+AGG | + | chr7.1:51076246-51076265 | MS.gene010973:CDS | 75.0% | |
| TCCGATGGCGCTCCCGCAGG+TGG | + | chr7.1:51076249-51076268 | MS.gene010973:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 51075970 | 51078210 | 51075970 | ID=MS.gene010973 |
| chr7.1 | mRNA | 51075970 | 51078210 | 51075970 | ID=MS.gene010973.t1;Parent=MS.gene010973 |
| chr7.1 | exon | 51075970 | 51076395 | 51075970 | ID=MS.gene010973.t1.exon1;Parent=MS.gene010973.t1 |
| chr7.1 | CDS | 51075970 | 51076395 | 51075970 | ID=cds.MS.gene010973.t1;Parent=MS.gene010973.t1 |
| chr7.1 | exon | 51077446 | 51078210 | 51077446 | ID=MS.gene010973.t1.exon2;Parent=MS.gene010973.t1 |
| chr7.1 | CDS | 51077446 | 51078210 | 51077446 | ID=cds.MS.gene010973.t1;Parent=MS.gene010973.t1 |
| Gene Sequence |
| Protein sequence |
