Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010975.t1 | XP_013448414.1 | 88.6 | 396 | 44 | 1 | 1 | 395 | 7 | 402 | 3.70E-196 | 694.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010975.t1 | Q9S7T8 | 51.9 | 391 | 182 | 5 | 6 | 393 | 3 | 390 | 1.4e-106 | 387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010975.t1 | A0A072TZ50 | 88.6 | 396 | 44 | 1 | 1 | 395 | 7 | 402 | 2.7e-196 | 694.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010975 | MS.gene045585 | PPI |
| MS.gene010975 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene010975 | PPI |
| MS.gene031697 | MS.gene010975 | PPI |
| MS.gene006610 | MS.gene010975 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010975.t1 | MTR_7g050750 | 89.394 | 396 | 41 | 1 | 1 | 395 | 1 | 396 | 0.0 | 696 |
| MS.gene010975.t1 | MTR_7g451890 | 87.879 | 396 | 47 | 1 | 1 | 395 | 7 | 402 | 0.0 | 682 |
| MS.gene010975.t1 | MTR_7g047780 | 88.636 | 396 | 44 | 1 | 1 | 395 | 7 | 402 | 0.0 | 680 |
| MS.gene010975.t1 | MTR_7g050810 | 85.533 | 394 | 56 | 1 | 3 | 395 | 11 | 404 | 0.0 | 657 |
| MS.gene010975.t1 | MTR_3g101180 | 65.394 | 393 | 129 | 3 | 8 | 393 | 6 | 398 | 6.74e-180 | 506 |
| MS.gene010975.t1 | MTR_8g461160 | 65.051 | 392 | 136 | 1 | 4 | 394 | 2 | 393 | 2.97e-174 | 491 |
| MS.gene010975.t1 | MTR_3g101130 | 63.384 | 396 | 136 | 5 | 2 | 395 | 1 | 389 | 7.46e-171 | 483 |
| MS.gene010975.t1 | MTR_4g045707 | 61.990 | 392 | 138 | 4 | 7 | 395 | 5 | 388 | 8.05e-169 | 478 |
| MS.gene010975.t1 | MTR_3g101010 | 63.427 | 391 | 138 | 3 | 6 | 395 | 3 | 389 | 2.30e-168 | 476 |
| MS.gene010975.t1 | MTR_7g050830 | 77.116 | 319 | 41 | 3 | 3 | 300 | 11 | 318 | 2.63e-168 | 474 |
| MS.gene010975.t1 | MTR_3g018740 | 62.916 | 391 | 137 | 4 | 6 | 394 | 3 | 387 | 6.24e-167 | 473 |
| MS.gene010975.t1 | MTR_8g027395 | 59.949 | 392 | 148 | 3 | 5 | 395 | 14 | 397 | 1.97e-161 | 459 |
| MS.gene010975.t1 | MTR_3g101030 | 57.568 | 403 | 142 | 6 | 14 | 395 | 35 | 429 | 9.11e-152 | 436 |
| MS.gene010975.t1 | MTR_3g048000 | 58.098 | 389 | 133 | 6 | 9 | 393 | 28 | 390 | 6.78e-151 | 432 |
| MS.gene010975.t1 | MTR_4g088525 | 60.215 | 372 | 131 | 3 | 28 | 393 | 7 | 367 | 7.71e-151 | 431 |
| MS.gene010975.t1 | MTR_8g027420 | 56.633 | 392 | 150 | 4 | 5 | 395 | 3 | 375 | 1.14e-148 | 426 |
| MS.gene010975.t1 | MTR_2g045980 | 56.345 | 394 | 158 | 5 | 6 | 394 | 3 | 387 | 8.65e-146 | 419 |
| MS.gene010975.t1 | MTR_2g046030 | 56.091 | 394 | 159 | 5 | 6 | 394 | 3 | 387 | 2.84e-145 | 418 |
| MS.gene010975.t1 | MTR_3g101050 | 57.106 | 387 | 138 | 5 | 12 | 393 | 33 | 396 | 3.41e-140 | 405 |
| MS.gene010975.t1 | MTR_3g101200 | 55.980 | 393 | 145 | 6 | 2 | 393 | 25 | 390 | 4.34e-139 | 402 |
| MS.gene010975.t1 | MTR_4g088535 | 55.641 | 390 | 148 | 4 | 2 | 390 | 1 | 366 | 8.03e-137 | 396 |
| MS.gene010975.t1 | MTR_3g015620 | 56.122 | 392 | 143 | 6 | 6 | 394 | 14 | 379 | 1.46e-135 | 393 |
| MS.gene010975.t1 | MTR_3g101190 | 54.278 | 374 | 105 | 4 | 23 | 395 | 4 | 312 | 2.94e-129 | 374 |
| MS.gene010975.t1 | MTR_3g102920 | 51.928 | 389 | 138 | 6 | 12 | 393 | 62 | 408 | 2.08e-125 | 368 |
| MS.gene010975.t1 | MTR_3g100995 | 62.109 | 256 | 92 | 2 | 140 | 395 | 14 | 264 | 6.24e-112 | 328 |
| MS.gene010975.t1 | MTR_3g018747 | 60.076 | 263 | 87 | 4 | 133 | 394 | 9 | 254 | 3.79e-100 | 298 |
| MS.gene010975.t1 | MTR_3g015760 | 61.509 | 265 | 92 | 4 | 133 | 394 | 23 | 280 | 2.79e-98 | 294 |
| MS.gene010975.t1 | MTR_3g100010 | 50.794 | 315 | 106 | 3 | 30 | 310 | 37 | 336 | 6.70e-98 | 295 |
| MS.gene010975.t1 | MTR_3g114310 | 40.263 | 380 | 204 | 10 | 32 | 395 | 38 | 410 | 1.08e-82 | 259 |
| MS.gene010975.t1 | MTR_3g111160 | 59.735 | 226 | 81 | 4 | 174 | 395 | 1 | 220 | 1.77e-81 | 249 |
| MS.gene010975.t1 | MTR_3g100520 | 58.482 | 224 | 76 | 3 | 174 | 395 | 1 | 209 | 2.28e-81 | 248 |
| MS.gene010975.t1 | MTR_3g101110 | 56.780 | 236 | 74 | 3 | 136 | 369 | 71 | 280 | 8.38e-79 | 244 |
| MS.gene010975.t1 | MTR_3g099970 | 59.694 | 196 | 62 | 2 | 133 | 328 | 20 | 198 | 6.34e-74 | 229 |
| MS.gene010975.t1 | MTR_2g046410 | 53.953 | 215 | 89 | 3 | 185 | 394 | 139 | 348 | 1.08e-69 | 223 |
| MS.gene010975.t1 | MTR_3g101150 | 65.823 | 158 | 50 | 2 | 239 | 393 | 1 | 157 | 1.29e-66 | 209 |
| MS.gene010975.t1 | MTR_3g101020 | 52.381 | 189 | 61 | 2 | 207 | 395 | 1 | 160 | 1.91e-59 | 190 |
| MS.gene010975.t1 | MTR_3g102870 | 54.777 | 157 | 71 | 0 | 196 | 352 | 1 | 157 | 1.74e-55 | 181 |
| MS.gene010975.t1 | MTR_3g111150 | 52.809 | 178 | 59 | 3 | 10 | 187 | 1 | 153 | 8.54e-55 | 179 |
| MS.gene010975.t1 | MTR_3g100990 | 57.812 | 128 | 51 | 2 | 7 | 133 | 4 | 129 | 3.61e-36 | 138 |
| MS.gene010975.t1 | MTR_3g101140 | 47.619 | 105 | 54 | 1 | 291 | 395 | 13 | 116 | 1.32e-21 | 89.7 |
| MS.gene010975.t1 | MTR_4g093550 | 49.425 | 87 | 42 | 1 | 6 | 92 | 4 | 88 | 1.27e-15 | 72.4 |
| MS.gene010975.t1 | MTR_6g046890 | 56.250 | 64 | 28 | 0 | 25 | 88 | 14 | 77 | 4.30e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010975.t1 | AT1G47710 | 51.918 | 391 | 182 | 5 | 6 | 393 | 3 | 390 | 1.69e-136 | 395 |
| MS.gene010975.t1 | AT1G47710 | 51.918 | 391 | 182 | 5 | 6 | 393 | 30 | 417 | 1.04e-135 | 394 |
| MS.gene010975.t1 | AT2G25240 | 48.072 | 389 | 187 | 8 | 8 | 392 | 5 | 382 | 2.60e-117 | 347 |
| MS.gene010975.t1 | AT2G26390 | 45.153 | 392 | 198 | 6 | 8 | 392 | 5 | 386 | 5.41e-114 | 338 |
| MS.gene010975.t1 | AT3G45220 | 43.544 | 395 | 204 | 6 | 8 | 392 | 5 | 390 | 2.72e-109 | 326 |
| MS.gene010975.t1 | AT1G64030 | 45.013 | 391 | 189 | 6 | 6 | 392 | 3 | 371 | 6.07e-105 | 315 |
| MS.gene010975.t1 | AT1G62170 | 44.205 | 371 | 171 | 6 | 31 | 392 | 88 | 431 | 3.19e-101 | 307 |
| MS.gene010975.t1 | AT2G14540 | 43.734 | 391 | 192 | 7 | 6 | 392 | 31 | 397 | 1.87e-96 | 294 |
| MS.gene010975.t1 | AT1G62170 | 41.089 | 404 | 169 | 8 | 31 | 392 | 88 | 464 | 2.83e-94 | 290 |
| MS.gene010975.t1 | AT2G35580 | 44.475 | 362 | 171 | 9 | 38 | 392 | 33 | 371 | 8.93e-94 | 286 |
| MS.gene010975.t1 | AT1G64010 | 44.796 | 221 | 94 | 5 | 174 | 392 | 1 | 195 | 1.12e-58 | 190 |
| MS.gene010975.t1 | AT1G64010 | 44.660 | 206 | 86 | 5 | 189 | 392 | 2 | 181 | 1.12e-51 | 171 |
| MS.gene010975.t1 | AT1G63280 | 54.237 | 118 | 50 | 2 | 130 | 245 | 5 | 120 | 7.90e-35 | 125 |
| MS.gene010975.t1 | AT1G62160 | 42.391 | 184 | 75 | 4 | 213 | 392 | 62 | 218 | 6.87e-34 | 125 |
| MS.gene010975.t1 | AT1G51330 | 51.786 | 112 | 51 | 3 | 131 | 239 | 29 | 140 | 7.76e-27 | 106 |
| MS.gene010975.t1 | AT1G64020 | 34.862 | 109 | 69 | 2 | 16 | 123 | 13 | 120 | 3.31e-13 | 66.2 |
Find 83 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAAAAGAAGTGAATTTA+TGG | 0.175161 | 7.1:-51030197 | MS.gene010975:CDS |
| AGTAAAGAACTTTATGTTTC+CGG | 0.199606 | 7.1:-51029655 | MS.gene010975:CDS |
| TCTGAGTTGCTAAAGAAATT+AGG | 0.232348 | 7.1:-51029733 | MS.gene010975:CDS |
| CCATCTTTGCCTTGTTTATA+AGG | 0.242434 | 7.1:+51029928 | None:intergenic |
| GTCAAACCTCCCATAGAAAA+AGG | 0.264352 | 7.1:+51029700 | None:intergenic |
| ATCATTCTTGCTGGTCATAA+AGG | 0.270660 | 7.1:+51029993 | None:intergenic |
| ACATAAAGTTCTTTACTAAT+AGG | 0.293337 | 7.1:+51029661 | None:intergenic |
| CACCTTTCCAACAAAGAGTA+TGG | 0.347373 | 7.1:+51029462 | None:intergenic |
| CTTGTTTCTTCTGTGCTCTC+CGG | 0.362058 | 7.1:-51031742 | MS.gene010975:CDS |
| TTGTTTCTTCTGTGCTCTCC+GGG | 0.381696 | 7.1:-51031741 | MS.gene010975:CDS |
| CTGATCAGAGAAGAGTTTAG+TGG | 0.389922 | 7.1:-51029487 | MS.gene010975:CDS |
| GACGAACTGATCATTCTTGC+TGG | 0.397498 | 7.1:+51029984 | None:intergenic |
| AAGTGGAAGTAGGCAAGTTC+CGG | 0.403387 | 7.1:-51029792 | MS.gene010975:CDS |
| CAAATGTTTGGTGATGTTCA+TGG | 0.406711 | 7.1:+51031930 | None:intergenic |
| CCTTGCTTGTCTTACGTCAA+TGG | 0.408285 | 7.1:-51031703 | MS.gene010975:CDS |
| CCTTATAAACAAGGCAAAGA+TGG | 0.409361 | 7.1:-51029928 | MS.gene010975:CDS |
| GTGCTCTCCGGGGCTCGCAC+TGG | 0.410447 | 7.1:-51031730 | MS.gene010975:CDS |
| TTGATTGGATAACAAATGTT+TGG | 0.426349 | 7.1:+51031918 | None:intergenic |
| AGAAACAAGCTGAGAGCATA+AGG | 0.429286 | 7.1:+51031756 | None:intergenic |
| TCAGAAGAAATATTGAATCT+TGG | 0.431161 | 7.1:+51029766 | None:intergenic |
| AGTAGTCATAAGTTGTTTGA+AGG | 0.434567 | 7.1:+51031645 | None:intergenic |
| GTTGTCAGCTTTGATTGATA+AGG | 0.435094 | 7.1:-51029860 | MS.gene010975:CDS |
| AGCACGGTGTTGAGCGATAA+TGG | 0.435236 | 7.1:+51031865 | None:intergenic |
| GTCATAAGTTGTTTGAAGGA+AGG | 0.435473 | 7.1:+51031649 | None:intergenic |
| GAGAAAAGAAGTGAATTTAT+GGG | 0.437617 | 7.1:-51030196 | MS.gene010975:CDS |
| AGTGAATTTATGGGCTGAAA+AGG | 0.440578 | 7.1:-51030187 | MS.gene010975:CDS |
| TTTCTTCCAGATGCAAAAGA+AGG | 0.445127 | 7.1:-51029883 | MS.gene010975:CDS |
| GTCTTACGTCAATGGTGTGT+GGG | 0.450358 | 7.1:-51031695 | MS.gene010975:CDS |
| AGTGGAACCATACTCTTTGT+TGG | 0.451399 | 7.1:-51029469 | MS.gene010975:CDS |
| CTCTCCGGGGCTCGCACTGG+TGG | 0.452692 | 7.1:-51031727 | MS.gene010975:CDS |
| AAATATTGAATCTTGGAATC+CGG | 0.456839 | 7.1:+51029773 | None:intergenic |
| TCAATTGGAGGGACCGGAGG+GGG | 0.459884 | 7.1:+51029538 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.465672 | 7.1:-51029616 | MS.gene010975:CDS |
| TGACTGTTGGCATGGTAGGC+GGG | 0.465714 | 7.1:-51029576 | MS.gene010975:CDS |
| TTTCTCCAGTCTGAATCAAC+CGG | 0.467958 | 7.1:-51031790 | MS.gene010975:CDS |
| TCATTCTTGCTGGTCATAAA+GGG | 0.472999 | 7.1:+51029994 | None:intergenic |
| AAGGTGGTCAATCCTCTTGA+TGG | 0.480370 | 7.1:-51029445 | MS.gene010975:CDS |
| TGTTCATGGAAACGTTGGTT+AGG | 0.481229 | 7.1:+51031944 | None:intergenic |
| TTGAGTGGGACCCTCGGAGC+CGG | 0.490233 | 7.1:+51031828 | None:intergenic |
| TGGTCAGCTACAAAGTCAAT+TGG | 0.500762 | 7.1:+51029523 | None:intergenic |
| TTGCAAAGATTAGACTCGTT+AGG | 0.510182 | 7.1:+51030115 | None:intergenic |
| CTTATAAACAAGGCAAAGAT+GGG | 0.514546 | 7.1:-51029927 | MS.gene010975:CDS |
| CTTGGTCTTCCTTATAAACA+AGG | 0.520368 | 7.1:-51029937 | MS.gene010975:CDS |
| AACCATACTCTTTGTTGGAA+AGG | 0.525947 | 7.1:-51029464 | MS.gene010975:CDS |
| ATGATCGCTGCCGGCTCCGA+GGG | 0.526010 | 7.1:-51031838 | MS.gene010975:CDS |
| ACAAAGTCAATTGGAGGGAC+CGG | 0.526884 | 7.1:+51029532 | None:intergenic |
| TGGGCTGAAAAGGAGACAAA+AGG | 0.527591 | 7.1:-51030177 | MS.gene010975:CDS |
| GTGACTGTTGGCATGGTAGG+CGG | 0.527948 | 7.1:-51029577 | MS.gene010975:CDS |
| GCAAATGCACTATACTTCAA+AGG | 0.528381 | 7.1:-51030096 | MS.gene010975:CDS |
| GCGGTGACTGTTGGCATGGT+AGG | 0.529850 | 7.1:-51029580 | MS.gene010975:CDS |
| AGGTCCACCAGTGCGAGCCC+CGG | 0.531653 | 7.1:+51031723 | None:intergenic |
| AGTCAATTGGAGGGACCGGA+GGG | 0.531920 | 7.1:+51029536 | None:intergenic |
| GAAAGACTTCTGAAATATGC+CGG | 0.537794 | 7.1:+51029636 | None:intergenic |
| GTCAATTGGAGGGACCGGAG+GGG | 0.545085 | 7.1:+51029537 | None:intergenic |
| TTCTTCCAGATGCAAAAGAA+GGG | 0.553642 | 7.1:-51029882 | MS.gene010975:CDS |
| GATCACCGGTTGATTCAGAC+TGG | 0.553675 | 7.1:+51031785 | None:intergenic |
| GCATAAGGATTTGAGATCAC+CGG | 0.555207 | 7.1:+51031771 | None:intergenic |
| TATGATCGCTGCCGGCTCCG+AGG | 0.555454 | 7.1:-51031839 | MS.gene010975:CDS |
| TCTCAATGGCAAGTCAGTAA+AGG | 0.555621 | 7.1:-51030019 | MS.gene010975:CDS |
| GGTTGATTCAGACTGGAGAA+AGG | 0.558446 | 7.1:+51031792 | None:intergenic |
| AAAGCTGCAGCGGTGACTGT+TGG | 0.567765 | 7.1:-51029589 | MS.gene010975:CDS |
| GTTAGGCTGTGAACTAAGCC+AGG | 0.569861 | 7.1:+51030132 | None:intergenic |
| CATACTCTTTGTTGGAAAGG+TGG | 0.571116 | 7.1:-51029461 | MS.gene010975:CDS |
| AGGTGGTCAATCCTCTTGAT+GGG | 0.571602 | 7.1:-51029444 | MS.gene010975:CDS |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.574991 | 7.1:+51031658 | None:intergenic |
| TGTCTTACGTCAATGGTGTG+TGG | 0.580488 | 7.1:-51031696 | MS.gene010975:CDS |
| CACTATACTTCAAAGGAGTG+TGG | 0.582450 | 7.1:-51030089 | MS.gene010975:CDS |
| TTACTGACTTGCCATTGAGA+AGG | 0.583004 | 7.1:+51030022 | None:intergenic |
| AAGTCAATTGGAGGGACCGG+AGG | 0.584759 | 7.1:+51029535 | None:intergenic |
| GTGCTCAGTATGATCGCTGC+CGG | 0.586534 | 7.1:-51031847 | MS.gene010975:CDS |
| CTTGTTTATAAGGAAGACCA+AGG | 0.603135 | 7.1:+51029938 | None:intergenic |
| TTCAACAATCACCCATCAAG+AGG | 0.605491 | 7.1:+51029433 | None:intergenic |
| TCAGCTACAAAGTCAATTGG+AGG | 0.607657 | 7.1:+51029526 | None:intergenic |
| AGAAAAGGAGTACCTTGTTG+AGG | 0.607756 | 7.1:+51031590 | None:intergenic |
| TGAAGTTGATTTCCTCAACA+AGG | 0.614896 | 7.1:-51031602 | MS.gene010975:intron |
| GGTGATGTTCATGGAAACGT+TGG | 0.634641 | 7.1:+51031939 | None:intergenic |
| TGTTTCTTCTGTGCTCTCCG+GGG | 0.647438 | 7.1:-51031740 | MS.gene010975:CDS |
| TGCAGCGGTGACTGTTGGCA+TGG | 0.650418 | 7.1:-51029584 | MS.gene010975:CDS |
| GGCAGCGATCATACTGAGCA+CGG | 0.656326 | 7.1:+51031849 | None:intergenic |
| CAGCTACAAAGTCAATTGGA+GGG | 0.661369 | 7.1:+51029527 | None:intergenic |
| AGAAGGTACGAAAGCTGCAG+CGG | 0.664748 | 7.1:-51029599 | MS.gene010975:CDS |
| AGGCTGTGAACTAAGCCAGG+TGG | 0.725274 | 7.1:+51030135 | None:intergenic |
| CCATTGACGTAAGACAAGCA+AGG | 0.746622 | 7.1:+51031703 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTTTACTTATATTAT+TGG | + | chr7.1:51031110-51031129 | None:intergenic | 10.0% |
| !!! | TAAAAATTAAATTTGCTTAA+AGG | + | chr7.1:51030646-51030665 | None:intergenic | 10.0% |
| !!! | TAACATTTTACTTATATTAT+TGG | + | chr7.1:51030728-51030747 | None:intergenic | 10.0% |
| !!! | TTAAGTTATTATTTTTTGAA+TGG | - | chr7.1:51030322-51030341 | MS.gene010975:intron | 10.0% |
| !! | TTCTTAATTACTTGATTAAT+TGG | - | chr7.1:51030427-51030446 | MS.gene010975:intron | 15.0% |
| !!! | ATATCAATATTGATTTAACA+TGG | + | chr7.1:51030263-51030282 | None:intergenic | 15.0% |
| !!! | TATCAATATTGATTTAACAT+GGG | + | chr7.1:51030262-51030281 | None:intergenic | 15.0% |
| !!! | TATTTTAATTTCTTTTGACA+CGG | - | chr7.1:51030600-51030619 | MS.gene010975:intron | 15.0% |
| !!! | TCAAATGATTTATTTTAAGA+TGG | - | chr7.1:51031161-51031180 | MS.gene010975:intron | 15.0% |
| !!! | TTTTAAATTTAGATGCATTA+GGG | - | chr7.1:51030154-51030173 | MS.gene010975:CDS | 15.0% |
| !!! | TTTTTAAATTTAGATGCATT+AGG | - | chr7.1:51030153-51030172 | MS.gene010975:CDS | 15.0% |
| !! | AAGATTGAAAAAGAAAGAAA+AGG | + | chr7.1:51029848-51029867 | None:intergenic | 20.0% |
| !! | ACATAAAGTTCTTTACTAAT+AGG | + | chr7.1:51031762-51031781 | None:intergenic | 20.0% |
| !! | TAATCAAGTAATTAAGAAAG+AGG | + | chr7.1:51030425-51030444 | None:intergenic | 20.0% |
| !! | TACAATTGATACTTATTTGA+AGG | - | chr7.1:51031191-51031210 | MS.gene010975:intron | 20.0% |
| !!! | ACAAGTTTGTTATTCATAAT+TGG | + | chr7.1:51030815-51030834 | None:intergenic | 20.0% |
| !!! | TAGAATGAATACTGATATTT+TGG | + | chr7.1:51030466-51030485 | None:intergenic | 20.0% |
| ! | AAATATTGAATCTTGGAATC+CGG | + | chr7.1:51031650-51031669 | None:intergenic | 25.0% |
| ! | AACTCATATACACAACTATT+TGG | - | chr7.1:51030228-51030247 | MS.gene010975:intron | 25.0% |
| ! | AGTAAAGAACTTTATGTTTC+CGG | - | chr7.1:51031765-51031784 | MS.gene010975:CDS | 25.0% |
| ! | ATATGACATTATTGATATGC+GGG | + | chr7.1:51030046-51030065 | None:intergenic | 25.0% |
| ! | CAAAACAAATAATGTGACTT+TGG | - | chr7.1:51030875-51030894 | MS.gene010975:intron | 25.0% |
| ! | CTCTGATCAGAAATAAAAAA+GGG | + | chr7.1:51031923-51031942 | None:intergenic | 25.0% |
| ! | GAGAAAAGAAGTGAATTTAT+GGG | - | chr7.1:51031224-51031243 | MS.gene010975:intron | 25.0% |
| ! | GATATGACATTATTGATATG+CGG | + | chr7.1:51030047-51030066 | None:intergenic | 25.0% |
| ! | TCAGAAGAAATATTGAATCT+TGG | + | chr7.1:51031657-51031676 | None:intergenic | 25.0% |
| ! | TCCTTATAAAAAAAGATTCC+CGG | - | chr7.1:51030069-51030088 | MS.gene010975:CDS | 25.0% |
| ! | TCTCTGATCAGAAATAAAAA+AGG | + | chr7.1:51031924-51031943 | None:intergenic | 25.0% |
| ! | TGAGAAAAGAAGTGAATTTA+TGG | - | chr7.1:51031223-51031242 | MS.gene010975:intron | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | - | chr7.1:51031804-51031823 | MS.gene010975:CDS | 25.0% |
| ! | TTGATTGGATAACAAATGTT+TGG | + | chr7.1:51029505-51029524 | None:intergenic | 25.0% |
| ! | TTGTATTCAAAATGAGTCAA+AGG | + | chr7.1:51030987-51031006 | None:intergenic | 25.0% |
| !! | ATTATTGGCACATATTTTGT+TGG | + | chr7.1:51031095-51031114 | None:intergenic | 25.0% |
| !! | TTGACTTTACCTTTTTCTAT+GGG | - | chr7.1:51031711-51031730 | MS.gene010975:CDS | 25.0% |
| !!! | ACACTAATGTTGATAATGTT+AGG | + | chr7.1:51030390-51030409 | None:intergenic | 25.0% |
| !!! | ATTGACTTTACCTTTTTCTA+TGG | - | chr7.1:51031710-51031729 | MS.gene010975:CDS | 25.0% |
| !!! | ATTTTGTTGGTAAATCAGTT+AGG | + | chr7.1:51031082-51031101 | None:intergenic | 25.0% |
| !!! | TTTGATGGTTTTAAAATCCT+TGG | - | chr7.1:51031465-51031484 | MS.gene010975:intron | 25.0% |
| !!! | TTTTGTTGGTAAATCAGTTA+GGG | + | chr7.1:51031081-51031100 | None:intergenic | 25.0% |
| !!! | TTTTTTCATAAGCAGATTGA+GGG | - | chr7.1:51030523-51030542 | MS.gene010975:intron | 25.0% |
| !!! | TTTTTTGAATGGATTGTGAT+CGG | - | chr7.1:51030333-51030352 | MS.gene010975:intron | 25.0% |
| !!! | TTTTTTTCATAAGCAGATTG+AGG | - | chr7.1:51030522-51030541 | MS.gene010975:intron | 25.0% |
| AGTAGTCATAAGTTGTTTGA+AGG | + | chr7.1:51029778-51029797 | None:intergenic | 30.0% | |
| ATTAAAAATCTTCTTCCACC+TGG | - | chr7.1:51031270-51031289 | MS.gene010975:intron | 30.0% | |
| CTAATGTCTTGACAATTAAC+TGG | - | chr7.1:51031029-51031048 | MS.gene010975:intron | 30.0% | |
| CTTATAAACAAGGCAAAGAT+GGG | - | chr7.1:51031493-51031512 | MS.gene010975:intron | 30.0% | |
| GGATCAATAAATCTCACTAT+TGG | - | chr7.1:51030759-51030778 | MS.gene010975:intron | 30.0% | |
| TAGTCTCTAACGTTAAACTA+TGG | + | chr7.1:51030105-51030124 | None:intergenic | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | - | chr7.1:51031687-51031706 | MS.gene010975:CDS | 30.0% | |
| TGATCAGAAATAAAAAAGGG+TGG | + | chr7.1:51031920-51031939 | None:intergenic | 30.0% | |
| TTGATTGAGTACACAATCAA+GGG | - | chr7.1:51030127-51030146 | MS.gene010975:CDS | 30.0% | |
| TTTGATTGAGTACACAATCA+AGG | - | chr7.1:51030126-51030145 | MS.gene010975:CDS | 30.0% | |
| ! | AAGGAGTTGATTGTGTTTAA+AGG | + | chr7.1:51030577-51030596 | None:intergenic | 30.0% |
| ! | CTCACAATCATAGACTATTT+TGG | + | chr7.1:51029980-51029999 | None:intergenic | 30.0% |
| ! | CTTTTCTCTGAGTTTTTGAT+TGG | + | chr7.1:51029520-51029539 | None:intergenic | 30.0% |
| ! | TAAAATGTTAGTTTCACCGT+GGG | - | chr7.1:51030738-51030757 | MS.gene010975:intron | 30.0% |
| ! | TTAGGTTTGTGAGTGATTTT+CGG | + | chr7.1:51029461-51029480 | None:intergenic | 30.0% |
| ! | TTGCTGTTATGCATAATTTG+GGG | - | chr7.1:51030939-51030958 | MS.gene010975:intron | 30.0% |
| ! | TTTGTTGGTAAATCAGTTAG+GGG | + | chr7.1:51031080-51031099 | None:intergenic | 30.0% |
| !! | ACTTGCTGTTATGCATAATT+TGG | - | chr7.1:51030937-51030956 | MS.gene010975:intron | 30.0% |
| !! | ATGTTGATAATGTTAGGCTA+AGG | + | chr7.1:51030384-51030403 | None:intergenic | 30.0% |
| !! | CTTGCTGTTATGCATAATTT+GGG | - | chr7.1:51030938-51030957 | MS.gene010975:intron | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | - | chr7.1:51031387-51031406 | MS.gene010975:intron | 30.0% |
| !!! | ACCGGGAATCTTTTTTTATA+AGG | + | chr7.1:51030073-51030092 | None:intergenic | 30.0% |
| AAAAAGATTCCCGGTCATAT+CGG | - | chr7.1:51030078-51030097 | MS.gene010975:CDS | 35.0% | |
| AACCATACTCTTTGTTGGAA+AGG | - | chr7.1:51031956-51031975 | MS.gene010975:CDS | 35.0% | |
| AGATGCATTAGGGACTATTA+TGG | - | chr7.1:51030164-51030183 | MS.gene010975:CDS | 35.0% | |
| AGTGAGATTTATTGATCCCA+CGG | + | chr7.1:51030757-51030776 | None:intergenic | 35.0% | |
| ATAAGCAGATTGAGGGATAA+GGG | - | chr7.1:51030530-51030549 | MS.gene010975:intron | 35.0% | |
| ATCATTCTTGCTGGTCATAA+AGG | + | chr7.1:51031430-51031449 | None:intergenic | 35.0% | |
| CAATCTTCCTCGTAAAAAAG+TGG | - | chr7.1:51031611-51031630 | MS.gene010975:CDS | 35.0% | |
| CCTTATAAACAAGGCAAAGA+TGG | - | chr7.1:51031492-51031511 | MS.gene010975:intron | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | + | chr7.1:51031485-51031504 | None:intergenic | 35.0% | |
| GCAAATGCACTATACTTCAA+AGG | - | chr7.1:51031324-51031343 | MS.gene010975:intron | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | + | chr7.1:51029774-51029793 | None:intergenic | 35.0% | |
| GTCTTGACAATTAACTGGAT+GGG | - | chr7.1:51031034-51031053 | MS.gene010975:intron | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | - | chr7.1:51031728-51031747 | MS.gene010975:CDS | 35.0% | |
| TCATTCTTGCTGGTCATAAA+GGG | + | chr7.1:51031429-51031448 | None:intergenic | 35.0% | |
| TGAACCATTAATGAGATTCG+CGG | - | chr7.1:51030357-51030376 | MS.gene010975:intron | 35.0% | |
| TGTCTTGACAATTAACTGGA+TGG | - | chr7.1:51031033-51031052 | MS.gene010975:intron | 35.0% | |
| TTATGTTTAATGCAACCTGC+TGG | + | chr7.1:51030693-51030712 | None:intergenic | 35.0% | |
| TTCTTCCAGATGCAAAAGAA+GGG | - | chr7.1:51031538-51031557 | MS.gene010975:intron | 35.0% | |
| TTGCAAAGATTAGACTCGTT+AGG | + | chr7.1:51031308-51031327 | None:intergenic | 35.0% | |
| TTTCTTCCAGATGCAAAAGA+AGG | - | chr7.1:51031537-51031556 | MS.gene010975:intron | 35.0% | |
| ! | ACTTTACCTTTTTCTATGGG+AGG | - | chr7.1:51031714-51031733 | MS.gene010975:CDS | 35.0% |
| ! | AGCTTCTGATTCTGAGTTTT+TGG | - | chr7.1:51031584-51031603 | MS.gene010975:intron | 35.0% |
| ! | AGTGAATTTATGGGCTGAAA+AGG | - | chr7.1:51031233-51031252 | MS.gene010975:intron | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | - | chr7.1:51031483-51031502 | MS.gene010975:intron | 35.0% |
| ! | GTAAAATGTTAGTTTCACCG+TGG | - | chr7.1:51030737-51030756 | MS.gene010975:intron | 35.0% |
| ! | GTTGTCAGCTTTGATTGATA+AGG | - | chr7.1:51031560-51031579 | MS.gene010975:intron | 35.0% |
| ! | GTTTGCTACTTCAAAAACGA+AGG | - | chr7.1:51031362-51031381 | MS.gene010975:intron | 35.0% |
| ! | TGAAGTTGATTTCCTCAACA+AGG | - | chr7.1:51029818-51029837 | MS.gene010975:CDS | 35.0% |
| !! | CAAATGTTTGGTGATGTTCA+TGG | + | chr7.1:51029493-51029512 | None:intergenic | 35.0% |
| !! | CCATCTTTGCCTTGTTTATA+AGG | + | chr7.1:51031495-51031514 | None:intergenic | 35.0% |
| !! | CTGGTTTTTGTGTTGGTATA+TGG | + | chr7.1:51030674-51030693 | None:intergenic | 35.0% |
| !! | GAAAGACTTCTGAAATATGC+CGG | + | chr7.1:51031787-51031806 | None:intergenic | 35.0% |
| AAACTATGGACCGATATGAC+CGG | + | chr7.1:51030091-51030110 | None:intergenic | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | - | chr7.1:51031951-51031970 | MS.gene010975:CDS | 40.0% | |
| ATACCAACACAAAAACCAGC+AGG | - | chr7.1:51030675-51030694 | MS.gene010975:intron | 40.0% | |
| ATGTGCCATGCTTAGAGTTT+AGG | - | chr7.1:51029874-51029893 | MS.gene010975:CDS | 40.0% | |
| CACCTTTCCAACAAAGAGTA+TGG | + | chr7.1:51031961-51031980 | None:intergenic | 40.0% | |
| CACTATACTTCAAAGGAGTG+TGG | - | chr7.1:51031331-51031350 | MS.gene010975:intron | 40.0% | |
| CAGCTACAAAGTCAATTGGA+GGG | + | chr7.1:51031896-51031915 | None:intergenic | 40.0% | |
| CATAAGCAGATTGAGGGATA+AGG | - | chr7.1:51030529-51030548 | MS.gene010975:intron | 40.0% | |
| CATACTCTTTGTTGGAAAGG+TGG | - | chr7.1:51031959-51031978 | MS.gene010975:CDS | 40.0% | |
| CCTCGTAAAAAAGTGGAAGT+AGG | - | chr7.1:51031618-51031637 | MS.gene010975:CDS | 40.0% | |
| CTGATCAGAGAAGAGTTTAG+TGG | - | chr7.1:51031933-51031952 | MS.gene010975:CDS | 40.0% | |
| GAAACCCTAAACTCTAAGCA+TGG | + | chr7.1:51029882-51029901 | None:intergenic | 40.0% | |
| GATCCTCATTCCACATTAAG+GGG | - | chr7.1:51030186-51030205 | MS.gene010975:CDS | 40.0% | |
| GGATCCTCATTCCACATTAA+GGG | - | chr7.1:51030185-51030204 | MS.gene010975:CDS | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | + | chr7.1:51031723-51031742 | None:intergenic | 40.0% | |
| TAAACTCTAAGCATGGCACA+TGG | + | chr7.1:51029875-51029894 | None:intergenic | 40.0% | |
| TAAGCAGATTGAGGGATAAG+GGG | - | chr7.1:51030531-51030550 | MS.gene010975:intron | 40.0% | |
| TCAGCTACAAAGTCAATTGG+AGG | + | chr7.1:51031897-51031916 | None:intergenic | 40.0% | |
| TCTCAATGGCAAGTCAGTAA+AGG | - | chr7.1:51031401-51031420 | MS.gene010975:intron | 40.0% | |
| TGGATCCTCATTCCACATTA+AGG | - | chr7.1:51030184-51030203 | MS.gene010975:CDS | 40.0% | |
| TGGTCAGCTACAAAGTCAAT+TGG | + | chr7.1:51031900-51031919 | None:intergenic | 40.0% | |
| TGTGCCATGCTTAGAGTTTA+GGG | - | chr7.1:51029875-51029894 | MS.gene010975:CDS | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | + | chr7.1:51029765-51029784 | None:intergenic | 40.0% | |
| TTTCTCCAGTCTGAATCAAC+CGG | - | chr7.1:51029630-51029649 | MS.gene010975:CDS | 40.0% | |
| ! | AGAAACAAGCTGAGAGCATA+AGG | + | chr7.1:51029667-51029686 | None:intergenic | 40.0% |
| ! | CAGTTCGTCAGTTCTTTTGA+TGG | - | chr7.1:51031450-51031469 | MS.gene010975:intron | 40.0% |
| ! | GCATAAGGATTTGAGATCAC+CGG | + | chr7.1:51029652-51029671 | None:intergenic | 40.0% |
| ! | TGTTCATGGAAACGTTGGTT+AGG | + | chr7.1:51029479-51029498 | None:intergenic | 40.0% |
| !! | AGAAAAGGAGTACCTTGTTG+AGG | + | chr7.1:51029833-51029852 | None:intergenic | 40.0% |
| !! | TTACTGACTTGCCATTGAGA+AGG | + | chr7.1:51031401-51031420 | None:intergenic | 40.0% |
| !!! | CCTACTTCCACTTTTTTACG+AGG | + | chr7.1:51031621-51031640 | None:intergenic | 40.0% |
| !!! | GAGAGCAGTTGTTTTTGAGT+GGG | + | chr7.1:51029609-51029628 | None:intergenic | 40.0% |
| AACTATGGACCGATATGACC+GGG | + | chr7.1:51030090-51030109 | None:intergenic | 45.0% | |
| AAGGTGGTCAATCCTCTTGA+TGG | - | chr7.1:51031975-51031994 | MS.gene010975:CDS | 45.0% | |
| AAGTGGAAGTAGGCAAGTTC+CGG | - | chr7.1:51031628-51031647 | MS.gene010975:CDS | 45.0% | |
| ACAAAGTCAATTGGAGGGAC+CGG | + | chr7.1:51031891-51031910 | None:intergenic | 45.0% | |
| AGGACCGCGAATCTCATTAA+TGG | + | chr7.1:51030364-51030383 | None:intergenic | 45.0% | |
| AGGTGGTCAATCCTCTTGAT+GGG | - | chr7.1:51031976-51031995 | MS.gene010975:CDS | 45.0% | |
| CCATTGACGTAAGACAAGCA+AGG | + | chr7.1:51029720-51029739 | None:intergenic | 45.0% | |
| CCTTGCTTGTCTTACGTCAA+TGG | - | chr7.1:51029717-51029736 | MS.gene010975:CDS | 45.0% | |
| GACGAACTGATCATTCTTGC+TGG | + | chr7.1:51031439-51031458 | None:intergenic | 45.0% | |
| GGGAGGTTTGACAAAAATGG+TGG | - | chr7.1:51031731-51031750 | MS.gene010975:CDS | 45.0% | |
| GGTGATGTTCATGGAAACGT+TGG | + | chr7.1:51029484-51029503 | None:intergenic | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | - | chr7.1:51029725-51029744 | MS.gene010975:CDS | 45.0% | |
| TGGGCTGAAAAGGAGACAAA+AGG | - | chr7.1:51031243-51031262 | MS.gene010975:intron | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | - | chr7.1:51029724-51029743 | MS.gene010975:CDS | 45.0% | |
| TTCATGTTCGCCCCTTAATG+TGG | + | chr7.1:51030199-51030218 | None:intergenic | 45.0% | |
| ! | CTTGTTTCTTCTGTGCTCTC+CGG | - | chr7.1:51029678-51029697 | MS.gene010975:CDS | 45.0% |
| ! | GACAACCCTTCTTTTGCATC+TGG | + | chr7.1:51031546-51031565 | None:intergenic | 45.0% |
| ! | GGTTGATTCAGACTGGAGAA+AGG | + | chr7.1:51029631-51029650 | None:intergenic | 45.0% |
| ! | GTGCTGTTGTGCATAATGCA+AGG | - | chr7.1:51030833-51030852 | MS.gene010975:intron | 45.0% |
| ! | TTGTTTCTTCTGTGCTCTCC+GGG | - | chr7.1:51029679-51029698 | MS.gene010975:CDS | 45.0% |
| !!! | CAACCTGCTGGTTTTTGTGT+TGG | + | chr7.1:51030681-51030700 | None:intergenic | 45.0% |
| !!! | GGAGAGCAGTTGTTTTTGAG+TGG | + | chr7.1:51029610-51029629 | None:intergenic | 45.0% |
| !!! | TTGTTTTTGAGTGGGACCCT+CGG | + | chr7.1:51029601-51029620 | None:intergenic | 45.0% |
| !! | AAAAGAAATTAAAATATAAA+AGG | + | chr7.1:51030596-51030615 | None:intergenic | 5.0% |
| GTTAGGCTGTGAACTAAGCC+AGG | + | chr7.1:51031291-51031310 | None:intergenic | 50.0% | |
| TCGCCCCTTAATGTGGAATG+AGG | + | chr7.1:51030192-51030211 | None:intergenic | 50.0% | |
| TGTTTCTTCTGTGCTCTCCG+GGG | - | chr7.1:51029680-51029699 | MS.gene010975:CDS | 50.0% | |
| ! | AGAAGGTACGAAAGCTGCAG+CGG | - | chr7.1:51031821-51031840 | MS.gene010975:CDS | 50.0% |
| ! | AGCACGGTGTTGAGCGATAA+TGG | + | chr7.1:51029558-51029577 | None:intergenic | 50.0% |
| ! | GATCACCGGTTGATTCAGAC+TGG | + | chr7.1:51029638-51029657 | None:intergenic | 50.0% |
| AAAGCTGCAGCGGTGACTGT+TGG | - | chr7.1:51031831-51031850 | MS.gene010975:CDS | 55.0% | |
| AAGTCAATTGGAGGGACCGG+AGG | + | chr7.1:51031888-51031907 | None:intergenic | 55.0% | |
| AGGCTGTGAACTAAGCCAGG+TGG | + | chr7.1:51031288-51031307 | None:intergenic | 55.0% | |
| AGTCAATTGGAGGGACCGGA+GGG | + | chr7.1:51031887-51031906 | None:intergenic | 55.0% | |
| GGCAGCGATCATACTGAGCA+CGG | + | chr7.1:51029574-51029593 | None:intergenic | 55.0% | |
| GTGACTGTTGGCATGGTAGG+CGG | - | chr7.1:51031843-51031862 | MS.gene010975:CDS | 55.0% | |
| GTGCTCAGTATGATCGCTGC+CGG | - | chr7.1:51029573-51029592 | MS.gene010975:CDS | 55.0% | |
| TGACTGTTGGCATGGTAGGC+GGG | - | chr7.1:51031844-51031863 | MS.gene010975:CDS | 55.0% | |
| GCGGTGACTGTTGGCATGGT+AGG | - | chr7.1:51031840-51031859 | MS.gene010975:CDS | 60.0% | |
| GTCAATTGGAGGGACCGGAG+GGG | + | chr7.1:51031886-51031905 | None:intergenic | 60.0% | |
| TCAATTGGAGGGACCGGAGG+GGG | + | chr7.1:51031885-51031904 | None:intergenic | 60.0% | |
| TGCAGCGGTGACTGTTGGCA+TGG | - | chr7.1:51031836-51031855 | MS.gene010975:CDS | 60.0% | |
| TGCTCCGTATAGACCCCCTC+CGG | - | chr7.1:51031869-51031888 | MS.gene010975:CDS | 60.0% | |
| GGGACCGGAGGGGGTCTATA+CGG | + | chr7.1:51031876-51031895 | None:intergenic | 65.0% | |
| TTGAGTGGGACCCTCGGAGC+CGG | + | chr7.1:51029595-51029614 | None:intergenic | 65.0% | |
| !! | ATGATCGCTGCCGGCTCCGA+GGG | - | chr7.1:51029582-51029601 | MS.gene010975:CDS | 65.0% |
| !! | TATGATCGCTGCCGGCTCCG+AGG | - | chr7.1:51029581-51029600 | MS.gene010975:CDS | 65.0% |
| AGGTCCACCAGTGCGAGCCC+CGG | + | chr7.1:51029700-51029719 | None:intergenic | 70.0% | |
| CTCTCCGGGGCTCGCACTGG+TGG | - | chr7.1:51029693-51029712 | MS.gene010975:CDS | 75.0% | |
| GTGCTCTCCGGGGCTCGCAC+TGG | - | chr7.1:51029690-51029709 | MS.gene010975:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 51029441 | 51032001 | 51029441 | ID=MS.gene010975 |
| chr7.1 | mRNA | 51029441 | 51032001 | 51029441 | ID=MS.gene010975.t1;Parent=MS.gene010975 |
| chr7.1 | exon | 51031603 | 51032001 | 51031603 | ID=MS.gene010975.t1.exon1;Parent=MS.gene010975.t1 |
| chr7.1 | CDS | 51031603 | 51032001 | 51031603 | ID=cds.MS.gene010975.t1;Parent=MS.gene010975.t1 |
| chr7.1 | exon | 51029441 | 51030229 | 51029441 | ID=MS.gene010975.t1.exon2;Parent=MS.gene010975.t1 |
| chr7.1 | CDS | 51029441 | 51030229 | 51029441 | ID=cds.MS.gene010975.t1;Parent=MS.gene010975.t1 |
| Gene Sequence |
| Protein sequence |
