Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010977.t1 | XP_013448414.1 | 82.8 | 401 | 54 | 3 | 5 | 391 | 3 | 402 | 2.60E-178 | 634.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010977.t1 | Q9S7T8 | 50.0 | 394 | 173 | 5 | 14 | 389 | 3 | 390 | 2.2e-101 | 370.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010977.t1 | A0A072TZ50 | 82.8 | 401 | 54 | 3 | 5 | 391 | 3 | 402 | 1.9e-178 | 634.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene010977 | PPI |
| MS.gene031697 | MS.gene010977 | PPI |
| MS.gene065945 | MS.gene010977 | PPI |
| MS.gene010977 | MS.gene045585 | PPI |
| MS.gene010977 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010977.t1 | MTR_7g050810 | 82.963 | 405 | 54 | 3 | 1 | 391 | 1 | 404 | 0.0 | 644 |
| MS.gene010977.t1 | MTR_7g451890 | 81.546 | 401 | 59 | 3 | 5 | 391 | 3 | 402 | 0.0 | 624 |
| MS.gene010977.t1 | MTR_7g047780 | 82.793 | 401 | 54 | 3 | 5 | 391 | 3 | 402 | 0.0 | 621 |
| MS.gene010977.t1 | MTR_7g050750 | 82.278 | 395 | 55 | 3 | 11 | 391 | 3 | 396 | 0.0 | 616 |
| MS.gene010977.t1 | MTR_7g050830 | 79.518 | 332 | 37 | 2 | 1 | 312 | 1 | 321 | 0.0 | 513 |
| MS.gene010977.t1 | MTR_3g101180 | 63.317 | 398 | 127 | 3 | 12 | 390 | 2 | 399 | 1.70e-170 | 482 |
| MS.gene010977.t1 | MTR_8g461160 | 64.948 | 388 | 121 | 3 | 16 | 389 | 6 | 392 | 1.48e-165 | 469 |
| MS.gene010977.t1 | MTR_3g101130 | 61.598 | 388 | 135 | 5 | 15 | 391 | 5 | 389 | 7.46e-161 | 457 |
| MS.gene010977.t1 | MTR_3g101010 | 62.500 | 392 | 128 | 4 | 14 | 391 | 3 | 389 | 1.99e-160 | 456 |
| MS.gene010977.t1 | MTR_3g018740 | 61.381 | 391 | 129 | 4 | 14 | 389 | 3 | 386 | 6.74e-160 | 455 |
| MS.gene010977.t1 | MTR_4g045707 | 59.694 | 392 | 135 | 5 | 15 | 391 | 5 | 388 | 4.33e-157 | 447 |
| MS.gene010977.t1 | MTR_8g027395 | 58.168 | 404 | 144 | 6 | 4 | 391 | 3 | 397 | 2.30e-155 | 444 |
| MS.gene010977.t1 | MTR_3g048000 | 56.863 | 408 | 129 | 8 | 4 | 390 | 10 | 391 | 2.58e-149 | 428 |
| MS.gene010977.t1 | MTR_3g101030 | 55.854 | 410 | 142 | 6 | 15 | 391 | 26 | 429 | 2.54e-147 | 424 |
| MS.gene010977.t1 | MTR_4g088525 | 57.182 | 369 | 137 | 4 | 36 | 390 | 7 | 368 | 1.37e-138 | 400 |
| MS.gene010977.t1 | MTR_8g027420 | 55.612 | 392 | 140 | 7 | 14 | 391 | 4 | 375 | 6.39e-138 | 398 |
| MS.gene010977.t1 | MTR_2g045980 | 54.822 | 394 | 150 | 6 | 14 | 389 | 3 | 386 | 1.54e-137 | 398 |
| MS.gene010977.t1 | MTR_2g046030 | 54.569 | 394 | 151 | 6 | 14 | 389 | 3 | 386 | 1.93e-136 | 395 |
| MS.gene010977.t1 | MTR_3g015620 | 53.117 | 401 | 153 | 3 | 1 | 389 | 1 | 378 | 6.25e-131 | 381 |
| MS.gene010977.t1 | MTR_4g088535 | 53.590 | 390 | 142 | 6 | 15 | 390 | 6 | 370 | 2.26e-127 | 372 |
| MS.gene010977.t1 | MTR_3g101200 | 53.299 | 394 | 148 | 8 | 8 | 390 | 23 | 391 | 1.50e-126 | 370 |
| MS.gene010977.t1 | MTR_3g101050 | 55.412 | 388 | 131 | 8 | 20 | 389 | 33 | 396 | 4.56e-126 | 369 |
| MS.gene010977.t1 | MTR_3g102920 | 52.713 | 387 | 128 | 7 | 20 | 390 | 62 | 409 | 1.66e-124 | 365 |
| MS.gene010977.t1 | MTR_3g101190 | 51.351 | 370 | 110 | 4 | 31 | 391 | 4 | 312 | 5.72e-122 | 355 |
| MS.gene010977.t1 | MTR_3g100995 | 60.392 | 255 | 85 | 4 | 149 | 391 | 14 | 264 | 1.95e-102 | 304 |
| MS.gene010977.t1 | MTR_3g100010 | 53.929 | 280 | 96 | 1 | 38 | 284 | 37 | 316 | 3.05e-97 | 293 |
| MS.gene010977.t1 | MTR_3g018747 | 58.491 | 265 | 73 | 5 | 142 | 389 | 9 | 253 | 5.56e-92 | 277 |
| MS.gene010977.t1 | MTR_3g015760 | 59.004 | 261 | 90 | 4 | 142 | 389 | 23 | 279 | 2.76e-88 | 268 |
| MS.gene010977.t1 | MTR_3g111160 | 58.407 | 226 | 71 | 5 | 183 | 391 | 1 | 220 | 1.48e-74 | 231 |
| MS.gene010977.t1 | MTR_3g100520 | 55.111 | 225 | 69 | 4 | 183 | 391 | 1 | 209 | 1.43e-73 | 228 |
| MS.gene010977.t1 | MTR_3g114310 | 38.845 | 381 | 196 | 11 | 40 | 391 | 38 | 410 | 8.86e-73 | 233 |
| MS.gene010977.t1 | MTR_3g101110 | 52.941 | 238 | 67 | 5 | 145 | 365 | 71 | 280 | 1.48e-68 | 218 |
| MS.gene010977.t1 | MTR_3g099970 | 59.239 | 184 | 50 | 2 | 142 | 316 | 20 | 187 | 4.69e-65 | 206 |
| MS.gene010977.t1 | MTR_2g046410 | 54.067 | 209 | 73 | 4 | 199 | 389 | 144 | 347 | 3.43e-64 | 209 |
| MS.gene010977.t1 | MTR_3g101020 | 54.545 | 176 | 64 | 4 | 216 | 391 | 1 | 160 | 6.79e-55 | 178 |
| MS.gene010977.t1 | MTR_3g111150 | 53.073 | 179 | 58 | 2 | 18 | 196 | 1 | 153 | 1.26e-54 | 178 |
| MS.gene010977.t1 | MTR_3g101150 | 59.119 | 159 | 48 | 4 | 248 | 390 | 1 | 158 | 1.97e-53 | 174 |
| MS.gene010977.t1 | MTR_3g102870 | 50.993 | 151 | 60 | 2 | 205 | 341 | 1 | 151 | 1.22e-41 | 144 |
| MS.gene010977.t1 | MTR_3g100990 | 58.915 | 129 | 51 | 1 | 15 | 143 | 4 | 130 | 1.52e-38 | 145 |
| MS.gene010977.t1 | MTR_3g101140 | 51.485 | 101 | 46 | 3 | 291 | 391 | 19 | 116 | 5.65e-21 | 87.8 |
| MS.gene010977.t1 | MTR_4g093550 | 52.273 | 88 | 40 | 1 | 14 | 101 | 4 | 89 | 1.31e-18 | 80.5 |
| MS.gene010977.t1 | MTR_6g046890 | 55.738 | 61 | 27 | 0 | 39 | 99 | 20 | 80 | 1.13e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010977.t1 | AT1G47710 | 50.000 | 394 | 173 | 5 | 14 | 389 | 3 | 390 | 1.79e-131 | 382 |
| MS.gene010977.t1 | AT1G47710 | 49.261 | 406 | 179 | 6 | 2 | 389 | 21 | 417 | 7.01e-131 | 382 |
| MS.gene010977.t1 | AT1G62170 | 47.644 | 382 | 179 | 6 | 14 | 388 | 64 | 431 | 4.58e-114 | 340 |
| MS.gene010977.t1 | AT2G26390 | 44.416 | 394 | 186 | 6 | 16 | 388 | 5 | 386 | 9.55e-111 | 330 |
| MS.gene010977.t1 | AT1G64030 | 47.090 | 378 | 188 | 5 | 14 | 388 | 3 | 371 | 8.96e-110 | 327 |
| MS.gene010977.t1 | AT2G25240 | 45.269 | 391 | 183 | 8 | 16 | 388 | 5 | 382 | 2.14e-108 | 323 |
| MS.gene010977.t1 | AT1G62170 | 43.855 | 415 | 179 | 7 | 14 | 388 | 64 | 464 | 5.68e-107 | 323 |
| MS.gene010977.t1 | AT2G14540 | 46.770 | 387 | 192 | 5 | 5 | 388 | 22 | 397 | 1.72e-106 | 320 |
| MS.gene010977.t1 | AT3G45220 | 42.424 | 396 | 195 | 6 | 16 | 388 | 5 | 390 | 6.99e-106 | 317 |
| MS.gene010977.t1 | AT2G35580 | 47.354 | 359 | 170 | 11 | 39 | 388 | 23 | 371 | 6.92e-101 | 304 |
| MS.gene010977.t1 | AT1G64010 | 50.725 | 207 | 89 | 3 | 183 | 388 | 1 | 195 | 8.08e-68 | 213 |
| MS.gene010977.t1 | AT1G64010 | 51.042 | 192 | 81 | 3 | 198 | 388 | 2 | 181 | 2.51e-60 | 193 |
| MS.gene010977.t1 | AT1G63280 | 56.780 | 118 | 47 | 2 | 139 | 254 | 5 | 120 | 1.61e-36 | 129 |
| MS.gene010977.t1 | AT1G62160 | 49.412 | 170 | 70 | 4 | 222 | 388 | 62 | 218 | 3.60e-36 | 132 |
| MS.gene010977.t1 | AT1G51330 | 53.571 | 112 | 49 | 3 | 140 | 248 | 29 | 140 | 6.04e-27 | 106 |
| MS.gene010977.t1 | AT1G64020 | 35.246 | 122 | 70 | 4 | 15 | 132 | 4 | 120 | 1.22e-14 | 70.5 |
| MS.gene010977.t1 | AT2G35555 | 40.659 | 91 | 45 | 3 | 262 | 350 | 1 | 84 | 3.43e-11 | 60.8 |
Find 90 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGAAGAAGTGAATTTA+TGG | 0.141848 | 7.1:+51023423 | MS.gene010977:CDS |
| TCTGAGTTGCTAAAGAAATT+AGG | 0.197225 | 7.1:+51023887 | MS.gene010977:CDS |
| AGCTTCTGATTCTGAATTCT+TGG | 0.241745 | 7.1:+51023784 | MS.gene010977:CDS |
| TGAAATATGCTGGGACTTAT+AGG | 0.254038 | 7.1:-51023932 | None:intergenic |
| ATCATTCTTGCTGGTCATAA+AGG | 0.270660 | 7.1:-51023627 | None:intergenic |
| CACCTTTCCAACAAAGAGTA+TGG | 0.347373 | 7.1:-51024119 | None:intergenic |
| TTTGATGGTTTCAAAGTCCT+TGG | 0.370663 | 7.1:+51023665 | MS.gene010977:CDS |
| GAGAGAAGAAGTGAATTTAT+GGG | 0.393630 | 7.1:+51023424 | MS.gene010977:CDS |
| AGCACGGTGTTAAGCGATAA+TGG | 0.414400 | 7.1:-51022075 | None:intergenic |
| AGTGAATTTATGGGCAGAAA+AGG | 0.417594 | 7.1:+51023433 | MS.gene010977:CDS |
| GCTTAACACCGTGCTCAGTA+TGG | 0.421884 | 7.1:+51022083 | MS.gene010977:CDS |
| GCCTACTTCCACTTCTTCAC+GGG | 0.426079 | 7.1:-51023819 | None:intergenic |
| TCAAAAGAAATATTGAATCT+TGG | 0.427509 | 7.1:-51023854 | None:intergenic |
| GATAAACTGATCATTCTTGC+TGG | 0.430849 | 7.1:-51023636 | None:intergenic |
| AGTGGAACCATACTCTTTGT+TGG | 0.431916 | 7.1:+51024112 | MS.gene010977:CDS |
| AGTAGTCATAAGTTGTTTGA+AGG | 0.434567 | 7.1:-51022298 | None:intergenic |
| GAAAGACTTCTGAAATATGC+TGG | 0.435315 | 7.1:-51023942 | None:intergenic |
| GTCATAAGTTGTTTGAAGGA+AGG | 0.435473 | 7.1:-51022294 | None:intergenic |
| AGAAACAACCTGAGAGCATA+AGG | 0.435581 | 7.1:-51022184 | None:intergenic |
| CCTTATAAACAAGGAAAAGA+TGG | 0.438964 | 7.1:+51023692 | MS.gene010977:CDS |
| AAGGTGGTCAATCCTCTTGT+TGG | 0.444770 | 7.1:+51024136 | MS.gene010977:CDS |
| GTTGTCAGCTTTGATTGATA+AGG | 0.451106 | 7.1:+51023760 | MS.gene010977:CDS |
| TGCCTACTTCCACTTCTTCA+CGG | 0.452299 | 7.1:-51023820 | None:intergenic |
| TCAATTGGAGGGACCGGAGG+GGG | 0.459884 | 7.1:-51024043 | None:intergenic |
| GTCTTACGTCCATGGTGTGT+GGG | 0.461955 | 7.1:+51022248 | MS.gene010977:CDS |
| CTCTCCGATGGCGCTCCCGC+CGG | 0.464172 | 7.1:+51022213 | MS.gene010977:CDS |
| CCTTGCTTGTCTTACGTCCA+TGG | 0.465180 | 7.1:+51022240 | MS.gene010977:CDS |
| TTGATCGGATAGCAAGTGTT+TGG | 0.466186 | 7.1:-51022022 | None:intergenic |
| GTTTCTTCTGTGCTCTCCGA+TGG | 0.466953 | 7.1:+51022201 | MS.gene010977:CDS |
| TTCATTGAACTAAATGAAGA+AGG | 0.470007 | 7.1:+51023962 | MS.gene010977:CDS |
| TCATTCTTGCTGGTCATAAA+GGG | 0.472999 | 7.1:-51023626 | None:intergenic |
| TGGGCAGAAAAGGAGACAAA+AGG | 0.475423 | 7.1:+51023443 | MS.gene010977:CDS |
| CAGAGAAACGTTGGTAAGGT+TGG | 0.478510 | 7.1:-51021992 | None:intergenic |
| TCCGATGGCGCTCCCGCCGG+TGG | 0.483297 | 7.1:+51022216 | MS.gene010977:CDS |
| AGGTGGTCAATCCTCTTGTT+GGG | 0.489888 | 7.1:+51024137 | MS.gene010977:CDS |
| CTGTTGCTGTGTGGGACCCT+CGG | 0.490630 | 7.1:-51022118 | None:intergenic |
| TCTCAAATCCTTATGCTCTC+AGG | 0.500474 | 7.1:+51022176 | MS.gene010977:CDS |
| TGGTCAGCTACAAAGTCAAT+TGG | 0.500762 | 7.1:-51024058 | None:intergenic |
| TCCACCGGCGGGAGCGCCAT+CGG | 0.507518 | 7.1:-51022217 | None:intergenic |
| CTGTGTGGGACCCTCGGAGT+CGG | 0.509184 | 7.1:-51022112 | None:intergenic |
| GCAACAGCCCGTAGCAGTGT+AGG | 0.514015 | 7.1:+51024001 | MS.gene010977:CDS |
| CACACCCGCCTACACTGCTA+CGG | 0.516683 | 7.1:-51024009 | None:intergenic |
| AAGCTGTGAACTGACCCGTT+TGG | 0.519881 | 7.1:-51023485 | None:intergenic |
| CTTGGTCTTCCTTATAAACA+AGG | 0.520282 | 7.1:+51023683 | MS.gene010977:CDS |
| CTTATAAACAAGGAAAAGAT+GGG | 0.522433 | 7.1:+51023693 | MS.gene010977:CDS |
| GAATCTTCCCCGTGAAGAAG+TGG | 0.522849 | 7.1:+51023811 | MS.gene010977:CDS |
| AACCATACTCTTTGTTGGAA+AGG | 0.525947 | 7.1:+51024117 | MS.gene010977:CDS |
| ACAAAGTCAATTGGAGGGAC+CGG | 0.526884 | 7.1:-51024049 | None:intergenic |
| GCTAATGCTCTATACTTCAA+AGG | 0.531065 | 7.1:+51023524 | MS.gene010977:CDS |
| AGTCAATTGGAGGGACCGGA+GGG | 0.531920 | 7.1:-51024045 | None:intergenic |
| GGGCAGAAAAGGAGACAAAA+GGG | 0.536096 | 7.1:+51023444 | MS.gene010977:CDS |
| GTCAATTGGAGGGACCGGAG+GGG | 0.545085 | 7.1:-51024044 | None:intergenic |
| GACAAGCAAGGTCCACCGGC+GGG | 0.545252 | 7.1:-51022228 | None:intergenic |
| TCTCAATGGCAAGTCAGTAA+AGG | 0.555621 | 7.1:+51023601 | MS.gene010977:CDS |
| TGTCTTACGTCCATGGTGTG+TGG | 0.557930 | 7.1:+51022247 | MS.gene010977:CDS |
| AAAGACTTCTGAAATATGCT+GGG | 0.560128 | 7.1:-51023941 | None:intergenic |
| CTCTATACTTCAAAGGAGTG+TGG | 0.560844 | 7.1:+51023531 | MS.gene010977:CDS |
| GAGAGAAGCTGTTGCTGTGT+GGG | 0.564931 | 7.1:-51022126 | None:intergenic |
| TGAACTAAATGAAGAAGGTA+CGG | 0.565467 | 7.1:+51023967 | MS.gene010977:CDS |
| ACACCCGCCTACACTGCTAC+GGG | 0.567780 | 7.1:-51024008 | None:intergenic |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.569665 | 7.1:-51022285 | None:intergenic |
| CATACTCTTTGTTGGAAAGG+TGG | 0.571116 | 7.1:+51024120 | MS.gene010977:CDS |
| CAGCCCGTAGCAGTGTAGGC+GGG | 0.571301 | 7.1:+51024005 | MS.gene010977:CDS |
| TTCAACAATCACCCAACAAG+AGG | 0.571873 | 7.1:-51024148 | None:intergenic |
| TTACTGACTTGCCATTGAGA+AGG | 0.574669 | 7.1:-51023598 | None:intergenic |
| ACAGCCCGTAGCAGTGTAGG+CGG | 0.576594 | 7.1:+51024004 | MS.gene010977:CDS |
| TGCAGTTGATTTCGTCAACA+AGG | 0.581408 | 7.1:+51022341 | MS.gene010977:CDS |
| GGTGATGTTCAGAGAAACGT+TGG | 0.584758 | 7.1:-51022001 | None:intergenic |
| AAGTCAATTGGAGGGACCGG+AGG | 0.584759 | 7.1:-51024046 | None:intergenic |
| TGTTCAGAGAAACGTTGGTA+AGG | 0.586578 | 7.1:-51021996 | None:intergenic |
| AGCATTAGCAAAGATGAGGC+TGG | 0.589759 | 7.1:-51023510 | None:intergenic |
| GCATAAGGATTTGAGATCAT+CGG | 0.590361 | 7.1:-51022169 | None:intergenic |
| GATCATCGGTGGATTCAGAC+TGG | 0.590926 | 7.1:-51022155 | None:intergenic |
| GTAAGACAAGCAAGGTCCAC+CGG | 0.593040 | 7.1:-51022232 | None:intergenic |
| ATGGTCGCTGCCGACTCCGA+GGG | 0.595136 | 7.1:+51022102 | MS.gene010977:CDS |
| TATGGTCGCTGCCGACTCCG+AGG | 0.604454 | 7.1:+51022101 | MS.gene010977:CDS |
| TAAGGATTTGAGATCATCGG+TGG | 0.605792 | 7.1:-51022166 | None:intergenic |
| TCAGCTACAAAGTCAATTGG+AGG | 0.607657 | 7.1:-51024055 | None:intergenic |
| CTTGTTTATAAGGAAGACCA+AGG | 0.608271 | 7.1:-51023682 | None:intergenic |
| CCCCGTGAAGAAGTGGAAGT+AGG | 0.610736 | 7.1:+51023818 | MS.gene010977:CDS |
| GGTGGATTCAGACTGGAGGA+AGG | 0.614881 | 7.1:-51022148 | None:intergenic |
| ATAGAGCATTAGCAAAGATG+AGG | 0.629223 | 7.1:-51023514 | None:intergenic |
| ATTGTTCAACCCACACACCA+TGG | 0.645482 | 7.1:-51022257 | None:intergenic |
| CAGCTACAAAGTCAATTGGA+GGG | 0.661369 | 7.1:-51024054 | None:intergenic |
| CCTACTTCCACTTCTTCACG+GGG | 0.668304 | 7.1:-51023818 | None:intergenic |
| GGCAGCGACCATACTGAGCA+CGG | 0.668745 | 7.1:-51022091 | None:intergenic |
| AGACAAGCAAGGTCCACCGG+CGG | 0.669121 | 7.1:-51022229 | None:intergenic |
| GGAGAGAAGCTGTTGCTGTG+TGG | 0.672647 | 7.1:-51022127 | None:intergenic |
| CATCGGTGGATTCAGACTGG+AGG | 0.684443 | 7.1:-51022152 | None:intergenic |
| CCATGGACGTAAGACAAGCA+AGG | 0.690316 | 7.1:-51022240 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGATTAAATTTTTCTGTT+TGG | - | chr7.1:51022809-51022828 | None:intergenic | 15.0% |
| !!! | TCAAATGATTTATTTTAACA+TGG | + | chr7.1:51023372-51023391 | MS.gene010977:intron | 15.0% |
| !! | ATTAAAAATCTTCTTCCAAA+CGG | + | chr7.1:51023470-51023489 | MS.gene010977:CDS | 20.0% |
| !! | ATTAATTGGTTAAAGAGTTA+GGG | + | chr7.1:51022644-51022663 | MS.gene010977:intron | 20.0% |
| !! | ATTTAATACTTCAAAAACGA+AGG | + | chr7.1:51023562-51023581 | MS.gene010977:CDS | 20.0% |
| !! | TCAAAAGAAATATTGAATCT+TGG | - | chr7.1:51023857-51023876 | None:intergenic | 20.0% |
| !! | TCAAAAGTCACATTATTAAT+TGG | - | chr7.1:51023053-51023072 | None:intergenic | 20.0% |
| !! | TTCTCAATTTCTTGATTAAT+TGG | + | chr7.1:51022630-51022649 | MS.gene010977:intron | 20.0% |
| !! | TTGTATTAAAAATGAGTCAA+AGG | - | chr7.1:51023221-51023240 | None:intergenic | 20.0% |
| !!! | TTTGTTCTTTTTCTTTTTTG+AGG | - | chr7.1:51021946-51021965 | None:intergenic | 20.0% |
| ! | CATAAACAACTCACAAATTA+GGG | + | chr7.1:51022383-51022402 | MS.gene010977:intron | 25.0% |
| ! | CTCTGATCAGAAATAAAAAA+GGG | - | chr7.1:51024084-51024103 | None:intergenic | 25.0% |
| ! | CTTATAAACAAGGAAAAGAT+GGG | + | chr7.1:51023693-51023712 | MS.gene010977:CDS | 25.0% |
| ! | GAAATTAGGTTTGACAAAAA+TGG | + | chr7.1:51023901-51023920 | MS.gene010977:CDS | 25.0% |
| ! | GATTAATTGGTTAAAGAGTT+AGG | + | chr7.1:51022643-51022662 | MS.gene010977:intron | 25.0% |
| ! | TAATCAAGAAATTGAGAAAG+AGG | - | chr7.1:51022628-51022647 | None:intergenic | 25.0% |
| ! | TCATAAACAACTCACAAATT+AGG | + | chr7.1:51022382-51022401 | MS.gene010977:intron | 25.0% |
| ! | TCTCTGATCAGAAATAAAAA+AGG | - | chr7.1:51024085-51024104 | None:intergenic | 25.0% |
| ! | TGTTGATATTATTGCACATA+TGG | - | chr7.1:51023312-51023331 | None:intergenic | 25.0% |
| ! | TTAAAAATCTTCTTCCAAAC+GGG | + | chr7.1:51023471-51023490 | MS.gene010977:CDS | 25.0% |
| ! | TTCATTGAACTAAATGAAGA+AGG | + | chr7.1:51023962-51023981 | MS.gene010977:CDS | 25.0% |
| !! | CTTTTCATTGAGTTTTTGAT+CGG | - | chr7.1:51022040-51022059 | None:intergenic | 25.0% |
| !! | TATGATTTTTACCTTCTCAA+TGG | + | chr7.1:51023587-51023606 | MS.gene010977:CDS | 25.0% |
| !!! | ACAAGTTTGTTTTTCACAAT+TGG | - | chr7.1:51022993-51023012 | None:intergenic | 25.0% |
| !!! | ATGTACAAGTTAGTTTTCAT+TGG | + | chr7.1:51022913-51022932 | MS.gene010977:intron | 25.0% |
| AGTAGTCATAAGTTGTTTGA+AGG | - | chr7.1:51022301-51022320 | None:intergenic | 30.0% | |
| ATTAGGTTTGACAAAAATGG+TGG | + | chr7.1:51023904-51023923 | MS.gene010977:CDS | 30.0% | |
| CCTTATAAACAAGGAAAAGA+TGG | + | chr7.1:51023692-51023711 | MS.gene010977:CDS | 30.0% | |
| CGTAAGTTAGTAACATAGTT+AGG | - | chr7.1:51022582-51022601 | None:intergenic | 30.0% | |
| GAGAGAAGAAGTGAATTTAT+GGG | + | chr7.1:51023424-51023443 | MS.gene010977:CDS | 30.0% | |
| GGATCAATAAATCTCACTAT+TGG | + | chr7.1:51022937-51022956 | MS.gene010977:intron | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | + | chr7.1:51023887-51023906 | MS.gene010977:CDS | 30.0% | |
| TGAACTAAATGAAGAAGGTA+CGG | + | chr7.1:51023967-51023986 | MS.gene010977:CDS | 30.0% | |
| TGAGAGAAGAAGTGAATTTA+TGG | + | chr7.1:51023423-51023442 | MS.gene010977:CDS | 30.0% | |
| TGATCAGAAATAAAAAAGGG+TGG | - | chr7.1:51024081-51024100 | None:intergenic | 30.0% | |
| ! | AAACTAACTTGTACATCATG+CGG | - | chr7.1:51022909-51022928 | None:intergenic | 30.0% |
| ! | CAGTTTATCAGTTCTTTTGA+TGG | + | chr7.1:51023650-51023669 | MS.gene010977:CDS | 30.0% |
| ! | TTAGTAACATAGTTAGGTTG+AGG | - | chr7.1:51022576-51022595 | None:intergenic | 30.0% |
| !! | AAAGACTTCTGAAATATGCT+GGG | - | chr7.1:51023944-51023963 | None:intergenic | 30.0% |
| !! | ATGGTTTGATACTGATTTGA+AGG | + | chr7.1:51023391-51023410 | MS.gene010977:intron | 30.0% |
| !! | CCATCTTTTCCTTGTTTATA+AGG | - | chr7.1:51023695-51023714 | None:intergenic | 30.0% |
| !! | GAAACATGAGTTGATTGTAA+AGG | - | chr7.1:51022745-51022764 | None:intergenic | 30.0% |
| !! | TAGTAACATAGTTAGGTTGA+GGG | - | chr7.1:51022575-51022594 | None:intergenic | 30.0% |
| !!! | GTCGATATTTTTTTTTTGCG+TGG | + | chr7.1:51022419-51022438 | MS.gene010977:intron | 30.0% |
| !!! | GTTCTTTTTCTTTTTTGAGG+AGG | - | chr7.1:51021943-51021962 | None:intergenic | 30.0% |
| !!! | TACAAGTTAGTTTTCATTGG+TGG | + | chr7.1:51022916-51022935 | MS.gene010977:intron | 30.0% |
| AACCATACTCTTTGTTGGAA+AGG | + | chr7.1:51024117-51024136 | MS.gene010977:CDS | 35.0% | |
| AACTCACAAATTAGGGTTTG+AGG | + | chr7.1:51022390-51022409 | MS.gene010977:intron | 35.0% | |
| AGCTTCTGATTCTGAATTCT+TGG | + | chr7.1:51023784-51023803 | MS.gene010977:CDS | 35.0% | |
| AGGTTTGATGTCACAGAAAA+TGG | - | chr7.1:51023201-51023220 | None:intergenic | 35.0% | |
| AGTGAATTTATGGGCAGAAA+AGG | + | chr7.1:51023433-51023452 | MS.gene010977:CDS | 35.0% | |
| ATCATTCTTGCTGGTCATAA+AGG | - | chr7.1:51023630-51023649 | None:intergenic | 35.0% | |
| CTCATTAGATCATCCTATCA+TGG | - | chr7.1:51022544-51022563 | None:intergenic | 35.0% | |
| CTGTCAACAAAACGCATTAT+TGG | + | chr7.1:51023170-51023189 | MS.gene010977:intron | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | - | chr7.1:51023685-51023704 | None:intergenic | 35.0% | |
| GATAAACTGATCATTCTTGC+TGG | - | chr7.1:51023639-51023658 | None:intergenic | 35.0% | |
| GCTAATGCTCTATACTTCAA+AGG | + | chr7.1:51023524-51023543 | MS.gene010977:CDS | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | - | chr7.1:51022297-51022316 | None:intergenic | 35.0% | |
| TCATTCTTGCTGGTCATAAA+GGG | - | chr7.1:51023629-51023648 | None:intergenic | 35.0% | |
| TGAAATATGCTGGGACTTAT+AGG | - | chr7.1:51023935-51023954 | None:intergenic | 35.0% | |
| TTCTTCCTGACGAAAAAGAT+GGG | + | chr7.1:51023738-51023757 | MS.gene010977:CDS | 35.0% | |
| TTTCTTCCTGACGAAAAAGA+TGG | + | chr7.1:51023737-51023756 | MS.gene010977:CDS | 35.0% | |
| ! | ACTCACTGTTTTCAAACAAG+TGG | - | chr7.1:51023084-51023103 | None:intergenic | 35.0% |
| ! | ATAGAGCATTAGCAAAGATG+AGG | - | chr7.1:51023517-51023536 | None:intergenic | 35.0% |
| ! | CTGATCAGAGAAGATTTTAG+TGG | + | chr7.1:51024094-51024113 | MS.gene010977:CDS | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | + | chr7.1:51023683-51023702 | MS.gene010977:CDS | 35.0% |
| ! | GCAAAATGAAAGCATGGAAA+GGG | - | chr7.1:51022872-51022891 | None:intergenic | 35.0% |
| ! | GCATAAGGATTTGAGATCAT+CGG | - | chr7.1:51022172-51022191 | None:intergenic | 35.0% |
| ! | GTTGTCAGCTTTGATTGATA+AGG | + | chr7.1:51023760-51023779 | MS.gene010977:CDS | 35.0% |
| ! | GTTTTTGAACAGACCATGAT+AGG | + | chr7.1:51022528-51022547 | MS.gene010977:intron | 35.0% |
| ! | TTTGATGGTTTCAAAGTCCT+TGG | + | chr7.1:51023665-51023684 | MS.gene010977:CDS | 35.0% |
| !! | GAAAGACTTCTGAAATATGC+TGG | - | chr7.1:51023945-51023964 | None:intergenic | 35.0% |
| ACAAACTTGTGCATAGTGCA+TGG | + | chr7.1:51023003-51023022 | MS.gene010977:intron | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | + | chr7.1:51024112-51024131 | MS.gene010977:CDS | 40.0% | |
| CACCTTTCCAACAAAGAGTA+TGG | - | chr7.1:51024122-51024141 | None:intergenic | 40.0% | |
| CAGCTAATTGGCAAGACATT+AGG | - | chr7.1:51023277-51023296 | None:intergenic | 40.0% | |
| CAGCTACAAAGTCAATTGGA+GGG | - | chr7.1:51024057-51024076 | None:intergenic | 40.0% | |
| CATACTCTTTGTTGGAAAGG+TGG | + | chr7.1:51024120-51024139 | MS.gene010977:CDS | 40.0% | |
| CTAATGTCTTGCCAATTAGC+TGG | + | chr7.1:51023275-51023294 | MS.gene010977:intron | 40.0% | |
| CTCTATACTTCAAAGGAGTG+TGG | + | chr7.1:51023531-51023550 | MS.gene010977:CDS | 40.0% | |
| TCAGCTACAAAGTCAATTGG+AGG | - | chr7.1:51024058-51024077 | None:intergenic | 40.0% | |
| TCGTACGCAAAATGAAAGCA+TGG | - | chr7.1:51022878-51022897 | None:intergenic | 40.0% | |
| TCTCAAATCCTTATGCTCTC+AGG | + | chr7.1:51022176-51022195 | MS.gene010977:CDS | 40.0% | |
| TCTCAATGGCAAGTCAGTAA+AGG | + | chr7.1:51023601-51023620 | MS.gene010977:CDS | 40.0% | |
| TGGTCAGCTACAAAGTCAAT+TGG | - | chr7.1:51024061-51024080 | None:intergenic | 40.0% | |
| TGTTCAGAGAAACGTTGGTA+AGG | - | chr7.1:51021999-51022018 | None:intergenic | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | - | chr7.1:51022288-51022307 | None:intergenic | 40.0% | |
| TTGATCGGATAGCAAGTGTT+TGG | - | chr7.1:51022025-51022044 | None:intergenic | 40.0% | |
| ! | AGAAACAACCTGAGAGCATA+AGG | - | chr7.1:51022187-51022206 | None:intergenic | 40.0% |
| ! | CGCAAAATGAAAGCATGGAA+AGG | - | chr7.1:51022873-51022892 | None:intergenic | 40.0% |
| ! | TAAGGATTTGAGATCATCGG+TGG | - | chr7.1:51022169-51022188 | None:intergenic | 40.0% |
| ! | TGCAGTTGATTTCGTCAACA+AGG | + | chr7.1:51022341-51022360 | MS.gene010977:CDS | 40.0% |
| !! | TTACTGACTTGCCATTGAGA+AGG | - | chr7.1:51023601-51023620 | None:intergenic | 40.0% |
| AAGGTGGTCAATCCTCTTGT+TGG | + | chr7.1:51024136-51024155 | MS.gene010977:CDS | 45.0% | |
| ACAAAGTCAATTGGAGGGAC+CGG | - | chr7.1:51024052-51024071 | None:intergenic | 45.0% | |
| AGACAGCCTATCCAGCTAAT+TGG | - | chr7.1:51023289-51023308 | None:intergenic | 45.0% | |
| AGCATTAGCAAAGATGAGGC+TGG | - | chr7.1:51023513-51023532 | None:intergenic | 45.0% | |
| AGGTGGTCAATCCTCTTGTT+GGG | + | chr7.1:51024137-51024156 | MS.gene010977:CDS | 45.0% | |
| ATTGTTCAACCCACACACCA+TGG | - | chr7.1:51022260-51022279 | None:intergenic | 45.0% | |
| GGGCAGAAAAGGAGACAAAA+GGG | + | chr7.1:51023444-51023463 | MS.gene010977:CDS | 45.0% | |
| GGTGATGTTCAGAGAAACGT+TGG | - | chr7.1:51022004-51022023 | None:intergenic | 45.0% | |
| GTCTGAACATGCGATCTTTC+TGG | - | chr7.1:51022845-51022864 | None:intergenic | 45.0% | |
| GTCTTGCCAATTAGCTGGAT+AGG | + | chr7.1:51023280-51023299 | MS.gene010977:intron | 45.0% | |
| TGCCTACTTCCACTTCTTCA+CGG | - | chr7.1:51023823-51023842 | None:intergenic | 45.0% | |
| TGGGCAGAAAAGGAGACAAA+AGG | + | chr7.1:51023443-51023462 | MS.gene010977:CDS | 45.0% | |
| ! | AGCACGGTGTTAAGCGATAA+TGG | - | chr7.1:51022078-51022097 | None:intergenic | 45.0% |
| ! | CAGAGAAACGTTGGTAAGGT+TGG | - | chr7.1:51021995-51022014 | None:intergenic | 45.0% |
| !! | GACAACCCATCTTTTTCGTC+AGG | - | chr7.1:51023746-51023765 | None:intergenic | 45.0% |
| AAGCTGTGAACTGACCCGTT+TGG | - | chr7.1:51023488-51023507 | None:intergenic | 50.0% | |
| CCATGGACGTAAGACAAGCA+AGG | - | chr7.1:51022243-51022262 | None:intergenic | 50.0% | |
| CCTACTTCCACTTCTTCACG+GGG | - | chr7.1:51023821-51023840 | None:intergenic | 50.0% | |
| CCTTGCTTGTCTTACGTCCA+TGG | + | chr7.1:51022240-51022259 | MS.gene010977:CDS | 50.0% | |
| GAATCTTCCCCGTGAAGAAG+TGG | + | chr7.1:51023811-51023830 | MS.gene010977:CDS | 50.0% | |
| GAGAGAAGCTGTTGCTGTGT+GGG | - | chr7.1:51022129-51022148 | None:intergenic | 50.0% | |
| GCCTACTTCCACTTCTTCAC+GGG | - | chr7.1:51023822-51023841 | None:intergenic | 50.0% | |
| GCTTAACACCGTGCTCAGTA+TGG | + | chr7.1:51022083-51022102 | MS.gene010977:CDS | 50.0% | |
| GTAAGACAAGCAAGGTCCAC+CGG | - | chr7.1:51022235-51022254 | None:intergenic | 50.0% | |
| GTCTTACGTCCATGGTGTGT+GGG | + | chr7.1:51022248-51022267 | MS.gene010977:CDS | 50.0% | |
| GTTTCTTCTGTGCTCTCCGA+TGG | + | chr7.1:51022201-51022220 | MS.gene010977:CDS | 50.0% | |
| TGTCTTACGTCCATGGTGTG+TGG | + | chr7.1:51022247-51022266 | MS.gene010977:CDS | 50.0% | |
| ! | GATCATCGGTGGATTCAGAC+TGG | - | chr7.1:51022158-51022177 | None:intergenic | 50.0% |
| AAGTCAATTGGAGGGACCGG+AGG | - | chr7.1:51024049-51024068 | None:intergenic | 55.0% | |
| AGTCAATTGGAGGGACCGGA+GGG | - | chr7.1:51024048-51024067 | None:intergenic | 55.0% | |
| CCCCGTGAAGAAGTGGAAGT+AGG | + | chr7.1:51023818-51023837 | MS.gene010977:CDS | 55.0% | |
| GGAGAGAAGCTGTTGCTGTG+TGG | - | chr7.1:51022130-51022149 | None:intergenic | 55.0% | |
| ! | CATCGGTGGATTCAGACTGG+AGG | - | chr7.1:51022155-51022174 | None:intergenic | 55.0% |
| ! | GGTGGATTCAGACTGGAGGA+AGG | - | chr7.1:51022151-51022170 | None:intergenic | 55.0% |
| ACACCCGCCTACACTGCTAC+GGG | - | chr7.1:51024011-51024030 | None:intergenic | 60.0% | |
| ACAGCCCGTAGCAGTGTAGG+CGG | + | chr7.1:51024004-51024023 | MS.gene010977:CDS | 60.0% | |
| AGACAAGCAAGGTCCACCGG+CGG | - | chr7.1:51022232-51022251 | None:intergenic | 60.0% | |
| CACACCCGCCTACACTGCTA+CGG | - | chr7.1:51024012-51024031 | None:intergenic | 60.0% | |
| CTGTTGCTGTGTGGGACCCT+CGG | - | chr7.1:51022121-51022140 | None:intergenic | 60.0% | |
| GCAACAGCCCGTAGCAGTGT+AGG | + | chr7.1:51024001-51024020 | MS.gene010977:CDS | 60.0% | |
| GGCAGCGACCATACTGAGCA+CGG | - | chr7.1:51022094-51022113 | None:intergenic | 60.0% | |
| GTCAATTGGAGGGACCGGAG+GGG | - | chr7.1:51024047-51024066 | None:intergenic | 60.0% | |
| TCAATTGGAGGGACCGGAGG+GGG | - | chr7.1:51024046-51024065 | None:intergenic | 60.0% | |
| TGCTCCGTATAGACCCCCTC+CGG | + | chr7.1:51024030-51024049 | MS.gene010977:CDS | 60.0% | |
| CAGCCCGTAGCAGTGTAGGC+GGG | + | chr7.1:51024005-51024024 | MS.gene010977:CDS | 65.0% | |
| CTGTGTGGGACCCTCGGAGT+CGG | - | chr7.1:51022115-51022134 | None:intergenic | 65.0% | |
| GACAAGCAAGGTCCACCGGC+GGG | - | chr7.1:51022231-51022250 | None:intergenic | 65.0% | |
| GGGACCGGAGGGGGTCTATA+CGG | - | chr7.1:51024037-51024056 | None:intergenic | 65.0% | |
| !! | ATGGTCGCTGCCGACTCCGA+GGG | + | chr7.1:51022102-51022121 | MS.gene010977:CDS | 65.0% |
| !! | TATGGTCGCTGCCGACTCCG+AGG | + | chr7.1:51022101-51022120 | MS.gene010977:CDS | 65.0% |
| CTCTCCGATGGCGCTCCCGC+CGG | + | chr7.1:51022213-51022232 | MS.gene010977:CDS | 75.0% | |
| !! | TCCACCGGCGGGAGCGCCAT+CGG | - | chr7.1:51022220-51022239 | None:intergenic | 75.0% |
| ! | TCCGATGGCGCTCCCGCCGG+TGG | + | chr7.1:51022216-51022235 | MS.gene010977:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 51021937 | 51024162 | 51021937 | ID=MS.gene010977 |
| chr7.1 | mRNA | 51021937 | 51024162 | 51021937 | ID=MS.gene010977.t1;Parent=MS.gene010977 |
| chr7.1 | exon | 51021937 | 51022362 | 51021937 | ID=MS.gene010977.t1.exon1;Parent=MS.gene010977.t1 |
| chr7.1 | CDS | 51021937 | 51022362 | 51021937 | ID=cds.MS.gene010977.t1;Parent=MS.gene010977.t1 |
| chr7.1 | exon | 51023413 | 51024162 | 51023413 | ID=MS.gene010977.t1.exon2;Parent=MS.gene010977.t1 |
| chr7.1 | CDS | 51023413 | 51024162 | 51023413 | ID=cds.MS.gene010977.t1;Parent=MS.gene010977.t1 |
| Gene Sequence |
| Protein sequence |
