Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010982.t1 | XP_013448414.1 | 89.2 | 397 | 42 | 1 | 1 | 397 | 7 | 402 | 3.20E-198 | 701 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010982.t1 | Q9S7T8 | 52.2 | 393 | 180 | 5 | 6 | 395 | 3 | 390 | 4.0e-109 | 396.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010982.t1 | A0A072TZ50 | 89.2 | 397 | 42 | 1 | 1 | 397 | 7 | 402 | 2.3e-198 | 701.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene010982 | PPI |
| MS.gene010982 | MS.gene045585 | PPI |
| MS.gene010982 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene010982 | PPI |
| MS.gene031697 | MS.gene010982 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010982.t1 | MTR_7g451890 | 88.665 | 397 | 44 | 1 | 1 | 397 | 7 | 402 | 0.0 | 689 |
| MS.gene010982.t1 | MTR_7g047780 | 89.169 | 397 | 42 | 1 | 1 | 397 | 7 | 402 | 0.0 | 685 |
| MS.gene010982.t1 | MTR_7g050750 | 87.406 | 397 | 49 | 1 | 1 | 397 | 1 | 396 | 0.0 | 681 |
| MS.gene010982.t1 | MTR_7g050810 | 85.316 | 395 | 57 | 1 | 3 | 397 | 11 | 404 | 0.0 | 665 |
| MS.gene010982.t1 | MTR_3g101180 | 66.247 | 397 | 129 | 1 | 4 | 395 | 2 | 398 | 0.0 | 523 |
| MS.gene010982.t1 | MTR_8g461160 | 67.436 | 390 | 124 | 2 | 8 | 396 | 6 | 393 | 3.17e-180 | 507 |
| MS.gene010982.t1 | MTR_3g101010 | 65.641 | 390 | 129 | 2 | 8 | 397 | 5 | 389 | 1.71e-175 | 495 |
| MS.gene010982.t1 | MTR_7g050830 | 77.812 | 320 | 40 | 2 | 3 | 302 | 11 | 319 | 4.90e-174 | 489 |
| MS.gene010982.t1 | MTR_4g045707 | 63.427 | 391 | 134 | 3 | 8 | 397 | 6 | 388 | 2.64e-172 | 487 |
| MS.gene010982.t1 | MTR_3g101130 | 63.683 | 391 | 134 | 4 | 8 | 397 | 6 | 389 | 1.64e-170 | 483 |
| MS.gene010982.t1 | MTR_3g018740 | 62.183 | 394 | 137 | 4 | 6 | 396 | 3 | 387 | 7.66e-167 | 473 |
| MS.gene010982.t1 | MTR_8g027395 | 60.204 | 392 | 147 | 3 | 6 | 397 | 15 | 397 | 4.20e-162 | 461 |
| MS.gene010982.t1 | MTR_3g101030 | 58.750 | 400 | 144 | 3 | 14 | 397 | 35 | 429 | 2.79e-159 | 456 |
| MS.gene010982.t1 | MTR_3g048000 | 60.154 | 389 | 127 | 5 | 9 | 395 | 28 | 390 | 3.70e-158 | 451 |
| MS.gene010982.t1 | MTR_4g088525 | 60.870 | 368 | 137 | 1 | 28 | 395 | 7 | 367 | 5.11e-156 | 445 |
| MS.gene010982.t1 | MTR_8g027420 | 56.888 | 392 | 149 | 4 | 6 | 397 | 4 | 375 | 5.16e-149 | 427 |
| MS.gene010982.t1 | MTR_2g046030 | 56.962 | 395 | 156 | 4 | 6 | 396 | 3 | 387 | 7.58e-149 | 427 |
| MS.gene010982.t1 | MTR_3g101050 | 60.052 | 388 | 127 | 6 | 12 | 395 | 33 | 396 | 3.32e-148 | 426 |
| MS.gene010982.t1 | MTR_2g045980 | 56.203 | 395 | 159 | 4 | 6 | 396 | 3 | 387 | 1.04e-146 | 422 |
| MS.gene010982.t1 | MTR_3g015620 | 55.949 | 395 | 147 | 4 | 3 | 396 | 11 | 379 | 8.52e-140 | 404 |
| MS.gene010982.t1 | MTR_3g101200 | 55.949 | 395 | 144 | 6 | 2 | 395 | 25 | 390 | 9.22e-139 | 402 |
| MS.gene010982.t1 | MTR_4g088535 | 54.430 | 395 | 155 | 4 | 8 | 402 | 7 | 376 | 8.88e-138 | 399 |
| MS.gene010982.t1 | MTR_3g102920 | 54.103 | 390 | 132 | 6 | 11 | 395 | 61 | 408 | 4.53e-132 | 385 |
| MS.gene010982.t1 | MTR_3g101190 | 53.825 | 366 | 103 | 3 | 32 | 397 | 13 | 312 | 8.22e-129 | 374 |
| MS.gene010982.t1 | MTR_3g100995 | 64.479 | 259 | 82 | 3 | 141 | 397 | 14 | 264 | 6.73e-116 | 339 |
| MS.gene010982.t1 | MTR_3g018747 | 61.364 | 264 | 83 | 4 | 134 | 396 | 9 | 254 | 3.69e-104 | 309 |
| MS.gene010982.t1 | MTR_3g015760 | 61.798 | 267 | 89 | 4 | 134 | 396 | 23 | 280 | 1.45e-101 | 303 |
| MS.gene010982.t1 | MTR_3g100010 | 51.429 | 315 | 105 | 2 | 30 | 311 | 37 | 336 | 3.38e-101 | 305 |
| MS.gene010982.t1 | MTR_3g101110 | 58.824 | 238 | 67 | 4 | 137 | 371 | 71 | 280 | 1.29e-82 | 255 |
| MS.gene010982.t1 | MTR_3g100520 | 59.111 | 225 | 74 | 3 | 175 | 397 | 1 | 209 | 2.49e-82 | 251 |
| MS.gene010982.t1 | MTR_3g111160 | 60.177 | 226 | 81 | 4 | 175 | 397 | 1 | 220 | 4.97e-82 | 251 |
| MS.gene010982.t1 | MTR_3g114310 | 40.420 | 381 | 204 | 11 | 32 | 397 | 38 | 410 | 9.96e-81 | 254 |
| MS.gene010982.t1 | MTR_3g099970 | 61.224 | 196 | 59 | 2 | 134 | 329 | 20 | 198 | 1.59e-75 | 233 |
| MS.gene010982.t1 | MTR_2g046410 | 57.619 | 210 | 80 | 2 | 191 | 396 | 144 | 348 | 6.93e-75 | 237 |
| MS.gene010982.t1 | MTR_3g101150 | 67.081 | 161 | 44 | 3 | 240 | 395 | 1 | 157 | 3.05e-68 | 213 |
| MS.gene010982.t1 | MTR_3g101020 | 54.688 | 192 | 53 | 3 | 208 | 397 | 1 | 160 | 9.57e-61 | 194 |
| MS.gene010982.t1 | MTR_3g102870 | 57.233 | 159 | 67 | 1 | 197 | 354 | 1 | 159 | 1.54e-56 | 184 |
| MS.gene010982.t1 | MTR_3g111150 | 52.514 | 179 | 59 | 3 | 10 | 188 | 1 | 153 | 3.67e-54 | 177 |
| MS.gene010982.t1 | MTR_3g100990 | 57.480 | 127 | 52 | 1 | 8 | 134 | 5 | 129 | 7.44e-38 | 143 |
| MS.gene010982.t1 | MTR_3g101140 | 49.038 | 104 | 51 | 2 | 294 | 397 | 15 | 116 | 5.94e-21 | 87.8 |
| MS.gene010982.t1 | MTR_4g093550 | 51.136 | 88 | 41 | 1 | 6 | 93 | 4 | 89 | 1.63e-17 | 77.8 |
| MS.gene010982.t1 | MTR_6g046890 | 55.224 | 67 | 30 | 0 | 25 | 91 | 14 | 80 | 6.99e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010982.t1 | AT1G47710 | 53.077 | 390 | 173 | 6 | 9 | 395 | 8 | 390 | 9.36e-140 | 404 |
| MS.gene010982.t1 | AT1G47710 | 53.077 | 390 | 173 | 6 | 9 | 395 | 35 | 417 | 4.33e-139 | 404 |
| MS.gene010982.t1 | AT2G26390 | 46.212 | 396 | 194 | 6 | 6 | 394 | 3 | 386 | 6.44e-121 | 357 |
| MS.gene010982.t1 | AT2G25240 | 47.837 | 393 | 188 | 8 | 6 | 394 | 3 | 382 | 3.11e-120 | 355 |
| MS.gene010982.t1 | AT3G45220 | 43.921 | 403 | 197 | 6 | 6 | 394 | 3 | 390 | 4.89e-117 | 347 |
| MS.gene010982.t1 | AT1G62170 | 44.192 | 396 | 186 | 6 | 6 | 394 | 64 | 431 | 4.41e-108 | 325 |
| MS.gene010982.t1 | AT1G64030 | 43.878 | 392 | 194 | 6 | 6 | 394 | 3 | 371 | 4.51e-107 | 321 |
| MS.gene010982.t1 | AT2G14540 | 44.417 | 403 | 194 | 7 | 6 | 405 | 31 | 406 | 1.18e-102 | 310 |
| MS.gene010982.t1 | AT1G62170 | 40.793 | 429 | 186 | 7 | 6 | 394 | 64 | 464 | 4.82e-101 | 308 |
| MS.gene010982.t1 | AT2G35580 | 45.455 | 363 | 168 | 9 | 38 | 394 | 33 | 371 | 8.03e-99 | 300 |
| MS.gene010982.t1 | AT1G64010 | 46.606 | 221 | 91 | 4 | 175 | 394 | 1 | 195 | 4.38e-63 | 202 |
| MS.gene010982.t1 | AT1G64010 | 46.602 | 206 | 83 | 4 | 190 | 394 | 2 | 181 | 5.15e-56 | 183 |
| MS.gene010982.t1 | AT1G63280 | 56.780 | 118 | 47 | 2 | 131 | 246 | 5 | 120 | 1.69e-36 | 130 |
| MS.gene010982.t1 | AT1G62160 | 39.344 | 183 | 83 | 5 | 214 | 394 | 62 | 218 | 5.64e-33 | 124 |
| MS.gene010982.t1 | AT1G51330 | 45.238 | 126 | 64 | 3 | 118 | 240 | 17 | 140 | 4.78e-25 | 101 |
| MS.gene010982.t1 | AT1G64020 | 35.043 | 117 | 73 | 3 | 9 | 124 | 6 | 120 | 3.28e-15 | 72.0 |
Find 83 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTAATTCTGAGTTTC+TGG | 0.112646 | 7.1:-50919457 | MS.gene010982:CDS |
| TCTGAGTTGCTAAAGAAATT+AGG | 0.188756 | 7.1:-50919354 | MS.gene010982:CDS |
| TGAGACAAGAAGTGAATTTA+TGG | 0.191852 | 7.1:-50919818 | MS.gene010982:CDS |
| AGTCAAGAACTTTATGTTTC+CGG | 0.215284 | 7.1:-50919276 | MS.gene010982:CDS |
| CCATCATTGCCTTGTTTATA+AGG | 0.246937 | 7.1:+50919549 | None:intergenic |
| ACATAAAGTTCTTGACTTAT+AGG | 0.247103 | 7.1:+50919282 | None:intergenic |
| GTCAAACCTCCCATAGAAAA+AGG | 0.264352 | 7.1:+50919321 | None:intergenic |
| TCATTCTTGCTGGTCATAAA+AGG | 0.321349 | 7.1:+50919615 | None:intergenic |
| TTGCTCTCAGCTTGTTTCTT+CGG | 0.343320 | 7.1:-50921217 | MS.gene010982:CDS |
| CAGTTTATCAGTTCGTTTGA+TGG | 0.352307 | 7.1:-50919591 | MS.gene010982:CDS |
| TACCTTTCCAACAAAGAGTA+TGG | 0.355887 | 7.1:+50919080 | None:intergenic |
| AAGTGGAAGTGGGCAAGTTC+AGG | 0.368038 | 7.1:-50919413 | MS.gene010982:CDS |
| CCTTATAAACAAGGCAATGA+TGG | 0.393197 | 7.1:-50919549 | MS.gene010982:CDS |
| CAAGTGTTTAGTGATGTTCA+TGG | 0.400723 | 7.1:+50921395 | None:intergenic |
| CCTTGCTTGTCTTACGTCAA+TGG | 0.408285 | 7.1:-50921165 | MS.gene010982:CDS |
| CTCTCCGATGGCGCTCCTGC+CGG | 0.414727 | 7.1:-50921192 | MS.gene010982:CDS |
| TCAAAAGAAATATTGAATCT+TGG | 0.427509 | 7.1:+50919387 | None:intergenic |
| GATAAACTGATCATTCTTGC+TGG | 0.430849 | 7.1:+50919605 | None:intergenic |
| AGTGGAACCATACTCTTTGT+TGG | 0.431916 | 7.1:-50919087 | MS.gene010982:CDS |
| AGTAGTCATAAGTTGTTTGA+AGG | 0.434567 | 7.1:+50921107 | None:intergenic |
| GTCATAAGTTGTTTGAAGGA+AGG | 0.435473 | 7.1:+50921111 | None:intergenic |
| TGGTAGTCAATCCTCTTTGT+TGG | 0.436843 | 7.1:-50919043 | MS.gene010982:CDS |
| AGTGAATTTATGGGCTGAAA+AGG | 0.440578 | 7.1:-50919808 | MS.gene010982:CDS |
| GTCTTACGTCAATGGTGTGT+GGG | 0.450358 | 7.1:-50921157 | MS.gene010982:CDS |
| GTTGTCAGCTTTGATTGATA+AGG | 0.451106 | 7.1:-50919481 | MS.gene010982:CDS |
| ACTGGAGGAAGGAGAGAAGT+TGG | 0.456126 | 7.1:+50921268 | None:intergenic |
| GAGACAAGAAGTGAATTTAT+GGG | 0.459874 | 7.1:-50919817 | MS.gene010982:CDS |
| GTCAATCCTCTTTGTTGGAA+AGG | 0.462213 | 7.1:-50919038 | MS.gene010982:CDS |
| TTCATTGAAGTAAATGAAGA+AGG | 0.465672 | 7.1:-50919237 | MS.gene010982:CDS |
| AAGGTAGTCAATCCTCTTGA+TGG | 0.468741 | 7.1:-50919063 | MS.gene010982:CDS |
| TGGGCTGAAAAGGAGACAAA+AGG | 0.472940 | 7.1:-50919798 | MS.gene010982:CDS |
| GTTGCTAAAGAAATTAGGAT+TGG | 0.473453 | 7.1:-50919349 | MS.gene010982:CDS |
| AGAAACAAGCTGAGAGCAAA+AGG | 0.476401 | 7.1:+50921221 | None:intergenic |
| TGTTCATGGAAACGTTGGTT+AGG | 0.481229 | 7.1:+50921409 | None:intergenic |
| TCGATTGGAGGTACCGGAGG+GGG | 0.493984 | 7.1:+50919156 | None:intergenic |
| GTTTCTTCGGTGCTCTCCGA+TGG | 0.498373 | 7.1:-50921204 | MS.gene010982:CDS |
| GTGCTCAGTATGATCGCTAC+TGG | 0.501161 | 7.1:-50921312 | MS.gene010982:CDS |
| TTGGTTCTGTGTGCGACCCT+CGG | 0.502509 | 7.1:+50921287 | None:intergenic |
| TCCACCGGCAGGAGCGCCAT+CGG | 0.508179 | 7.1:+50921188 | None:intergenic |
| TCCGATGGCGCTCCTGCCGG+TGG | 0.511998 | 7.1:-50921189 | MS.gene010982:CDS |
| AAGAAACCTTTCCAACAAAG+AGG | 0.515818 | 7.1:+50919032 | None:intergenic |
| GCTAATGCACTATATTTCAA+AGG | 0.516256 | 7.1:-50919717 | MS.gene010982:CDS |
| TCTCAATGGCAACTCAATCA+AGG | 0.516566 | 7.1:-50919640 | MS.gene010982:CDS |
| AACCATACTCTTTGTTGGAA+AGG | 0.521263 | 7.1:-50919082 | MS.gene010982:CDS |
| GACAAGCAAGGTCCACCGGC+AGG | 0.524642 | 7.1:+50921177 | None:intergenic |
| TTCCTCCAGTCTGAATCCAC+AGG | 0.528426 | 7.1:-50921255 | MS.gene010982:CDS |
| CTTGGTCTTCCTTATAAACA+AGG | 0.530839 | 7.1:-50919558 | MS.gene010982:CDS |
| CTTATAAACAAGGCAATGAT+GGG | 0.531134 | 7.1:-50919548 | MS.gene010982:CDS |
| GAAAGACTTCTGAAATATGC+CGG | 0.537794 | 7.1:+50919257 | None:intergenic |
| AGCACAGTGTTTAACGATAA+CGG | 0.539789 | 7.1:+50921330 | None:intergenic |
| GGGCTGAAAAGGAGACAAAA+GGG | 0.540477 | 7.1:-50919797 | MS.gene010982:CDS |
| ACAAAGTCGATTGGAGGTAC+CGG | 0.558153 | 7.1:+50919150 | None:intergenic |
| AAAGCTGCAGCGGTGACTGT+TGG | 0.567765 | 7.1:-50919210 | MS.gene010982:CDS |
| TGATTGAGTTGCCATTGAGA+AGG | 0.569731 | 7.1:+50919643 | None:intergenic |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.574991 | 7.1:+50921120 | None:intergenic |
| AGTCGATTGGAGGTACCGGA+GGG | 0.578052 | 7.1:+50919154 | None:intergenic |
| AGTGATGTTCATGGAAACGT+TGG | 0.579114 | 7.1:+50921404 | None:intergenic |
| TGTCTTACGTCAATGGTGTG+TGG | 0.580488 | 7.1:-50921158 | MS.gene010982:CDS |
| ATGATCGCTACTGGCTCCGA+GGG | 0.582367 | 7.1:-50921303 | MS.gene010982:CDS |
| TGGTCAGCTACAAAGTCGAT+TGG | 0.583969 | 7.1:+50919141 | None:intergenic |
| CACTATATTTCAAAGGAGTG+TGG | 0.586966 | 7.1:-50919710 | MS.gene010982:CDS |
| AAGTCGATTGGAGGTACCGG+AGG | 0.593494 | 7.1:+50919153 | None:intergenic |
| GATCACCTGTGGATTCAGAC+TGG | 0.597900 | 7.1:+50921250 | None:intergenic |
| ACTGTTGGCATGGCATTATG+CGG | 0.601162 | 7.1:-50919195 | MS.gene010982:CDS |
| CTGTTGGCATGGCATTATGC+GGG | 0.603570 | 7.1:-50919194 | MS.gene010982:CDS |
| AGAATGATGCAGAATCTCAT+CGG | 0.603845 | 7.1:-50921447 | MS.gene010982:CDS |
| TGCAGCGGTGACTGTTGGCA+TGG | 0.605228 | 7.1:-50919205 | MS.gene010982:CDS |
| TATGATCGCTACTGGCTCCG+AGG | 0.606363 | 7.1:-50921304 | MS.gene010982:CDS |
| GTAAGACAAGCAAGGTCCAC+CGG | 0.606727 | 7.1:+50921173 | None:intergenic |
| TGTGGATTCAGACTGGAGGA+AGG | 0.608761 | 7.1:+50921257 | None:intergenic |
| ATAGTGCATTAGCAAAGATG+AGG | 0.612099 | 7.1:+50919727 | None:intergenic |
| CTTGTTTATAAGGAAGACCA+AGG | 0.612910 | 7.1:+50919559 | None:intergenic |
| GTCGATTGGAGGTACCGGAG+GGG | 0.613526 | 7.1:+50919155 | None:intergenic |
| TGCAGCTGATTTCGTCAACA+AGG | 0.614701 | 7.1:-50921064 | MS.gene010982:intron |
| TCAGCTACAAAGTCGATTGG+AGG | 0.618715 | 7.1:+50919144 | None:intergenic |
| AAAGGATTTGAGATCACCTG+TGG | 0.624197 | 7.1:+50921239 | None:intergenic |
| GAGGATTGACTACCATCAAG+AGG | 0.642908 | 7.1:+50919051 | None:intergenic |
| TAGTGCATTAGCAAAGATGA+GGG | 0.646084 | 7.1:+50919728 | None:intergenic |
| CACCTGTGGATTCAGACTGG+AGG | 0.650633 | 7.1:+50921253 | None:intergenic |
| AGAAGGTACAAAAGCTGCAG+CGG | 0.657101 | 7.1:-50919220 | MS.gene010982:CDS |
| TGCATTAGCAAAGATGAGGG+TGG | 0.683896 | 7.1:+50919731 | None:intergenic |
| AAGCTGTTAACTGAGTCATG+TGG | 0.730192 | 7.1:+50919756 | None:intergenic |
| CCATTGACGTAAGACAAGCA+AGG | 0.746622 | 7.1:+50921165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAGTTATTATTTTTTTTAA+TGG | - | chr7.1:50919637-50919656 | MS.gene010982:CDS | 10.0% |
| !! | TTCAAATGATTTATTTAACA+TGG | - | chr7.1:50920581-50920600 | MS.gene010982:intron | 15.0% |
| !! | TTCTTAATTACTTGATTAAT+TGG | - | chr7.1:50919795-50919814 | MS.gene010982:CDS | 15.0% |
| !!! | AAAAATTAAATTTTGCTTGA+AGG | + | chr7.1:50920066-50920085 | None:intergenic | 15.0% |
| !!! | AAACATTTTGTTGATATTAT+TGG | + | chr7.1:50920531-50920550 | None:intergenic | 15.0% |
| !!! | AGATTTTAAAACTGATTATT+TGG | + | chr7.1:50920034-50920053 | None:intergenic | 15.0% |
| !!! | TTTTTTTAATGGATTGTTAT+GGG | - | chr7.1:50919648-50919667 | MS.gene010982:CDS | 15.0% |
| !!! | TTTTTTTTAATGGATTGTTA+TGG | - | chr7.1:50919647-50919666 | MS.gene010982:CDS | 15.0% |
| !! | AAAATAAGACAAGCATAATT+TGG | - | chr7.1:50920339-50920358 | MS.gene010982:intron | 20.0% |
| !! | AAATAAGACAAGCATAATTT+GGG | - | chr7.1:50920340-50920359 | MS.gene010982:intron | 20.0% |
| !! | TAATCAAGTAATTAAGAAAG+AGG | + | chr7.1:50919793-50919812 | None:intergenic | 20.0% |
| !! | TCAAAAGAAATATTGAATCT+TGG | + | chr7.1:50921077-50921096 | None:intergenic | 20.0% |
| !! | TTAAAACTGATTATTTGGAA+AGG | + | chr7.1:50920029-50920048 | None:intergenic | 20.0% |
| !!! | AATTACAGTTTTTAAACAAG+TGG | + | chr7.1:50920244-50920263 | None:intergenic | 20.0% |
| !!! | ATGAAGACTGATATTATTTT+AGG | + | chr7.1:50919845-50919864 | None:intergenic | 20.0% |
| ! | ACATAAAGTTCTTGACTTAT+AGG | + | chr7.1:50921182-50921201 | None:intergenic | 25.0% |
| ! | AGACATTAGGTAATCTTTAT+TGG | + | chr7.1:50920427-50920446 | None:intergenic | 25.0% |
| ! | ATTAATTGGCTAAACAGTTA+GGG | - | chr7.1:50919809-50919828 | MS.gene010982:CDS | 25.0% |
| ! | CTCTGATCAGAAATAAAAAA+GGG | + | chr7.1:50921346-50921365 | None:intergenic | 25.0% |
| ! | TAAACACTAAGTTCGTAAAT+CGG | + | chr7.1:50919761-50919780 | None:intergenic | 25.0% |
| ! | TCTCTGATCAGAAATAAAAA+AGG | + | chr7.1:50921347-50921366 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | - | chr7.1:50921224-50921243 | MS.gene010982:CDS | 25.0% |
| ! | TTGTATTCAAAATGAGTCAA+AGG | + | chr7.1:50920396-50920415 | None:intergenic | 25.0% |
| !! | ATTATTGGCACATATTTTGT+TGG | + | chr7.1:50920516-50920535 | None:intergenic | 25.0% |
| !!! | ACAAGCTTGTTTTTCATAAT+TGG | + | chr7.1:50920174-50920193 | None:intergenic | 25.0% |
| !!! | TTTTGTTGGTAAATCACATA+TGG | + | chr7.1:50920502-50920521 | None:intergenic | 25.0% |
| !!! | TTTTTTCATAAGCAGATTGA+GGG | - | chr7.1:50919919-50919938 | MS.gene010982:intron | 25.0% |
| !!! | TTTTTTTCATAAGCAGATTG+AGG | - | chr7.1:50919918-50919937 | MS.gene010982:intron | 25.0% |
| AACCGATTATTGTGCTTTAA+AGG | + | chr7.1:50919989-50920008 | None:intergenic | 30.0% | |
| AACTGTAATTAGCACATATG+AGG | - | chr7.1:50920254-50920273 | MS.gene010982:intron | 30.0% | |
| AAGGATGGCATATACTAAAA+AGG | + | chr7.1:50919457-50919476 | None:intergenic | 30.0% | |
| AATCACATATGGAAACAGTT+AGG | + | chr7.1:50920491-50920510 | None:intergenic | 30.0% | |
| AGTAGTCATAAGTTGTTTGA+AGG | + | chr7.1:50919357-50919376 | None:intergenic | 30.0% | |
| AGTCAAGAACTTTATGTTTC+CGG | - | chr7.1:50921185-50921204 | MS.gene010982:CDS | 30.0% | |
| ATTCCAAAGTCACATTATTG+AGG | + | chr7.1:50920215-50920234 | None:intergenic | 30.0% | |
| CTTACATGTAATTGTACTAC+AGG | + | chr7.1:50919962-50919981 | None:intergenic | 30.0% | |
| CTTATAAACAAGGCAATGAT+GGG | - | chr7.1:50920913-50920932 | MS.gene010982:intron | 30.0% | |
| GAGACAAGAAGTGAATTTAT+GGG | - | chr7.1:50920644-50920663 | MS.gene010982:intron | 30.0% | |
| GATTAATTGGCTAAACAGTT+AGG | - | chr7.1:50919808-50919827 | MS.gene010982:CDS | 30.0% | |
| GCTAATGCACTATATTTCAA+AGG | - | chr7.1:50920744-50920763 | MS.gene010982:intron | 30.0% | |
| GTTAAGCTTAATGAGAGTTT+CGG | - | chr7.1:50919683-50919702 | MS.gene010982:CDS | 30.0% | |
| GTTGCTAAAGAAATTAGGAT+TGG | - | chr7.1:50921112-50921131 | MS.gene010982:CDS | 30.0% | |
| GTTTGATACTTCAAAAACGA+AGG | - | chr7.1:50920782-50920801 | MS.gene010982:intron | 30.0% | |
| TAAACAGTTAGGGTATAAAG+TGG | - | chr7.1:50919819-50919838 | MS.gene010982:CDS | 30.0% | |
| TCTCATTAAGCTTAACACAA+TGG | + | chr7.1:50919679-50919698 | None:intergenic | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | - | chr7.1:50921107-50921126 | MS.gene010982:CDS | 30.0% | |
| TGAGACAAGAAGTGAATTTA+TGG | - | chr7.1:50920643-50920662 | MS.gene010982:intron | 30.0% | |
| TGATCAGAAATAAAAAAGGG+TGG | + | chr7.1:50921343-50921362 | None:intergenic | 30.0% | |
| TTCCAAAGTCACATTATTGA+GGG | + | chr7.1:50920214-50920233 | None:intergenic | 30.0% | |
| ! | AGTATATGCCATCCTTTTAA+GGG | - | chr7.1:50919461-50919480 | MS.gene010982:CDS | 30.0% |
| ! | TAGTATATGCCATCCTTTTA+AGG | - | chr7.1:50919460-50919479 | MS.gene010982:CDS | 30.0% |
| !! | CTTTTCTTTGAGTTTTTGAC+TGG | + | chr7.1:50919096-50919115 | None:intergenic | 30.0% |
| !! | TACAATTGATACTGATTCGT+AGG | - | chr7.1:50920611-50920630 | MS.gene010982:intron | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | - | chr7.1:50920807-50920826 | MS.gene010982:intron | 30.0% |
| !! | TGCCTTTAAAGCACAATAAT+CGG | - | chr7.1:50919984-50920003 | MS.gene010982:intron | 30.0% |
| !!! | ATTGGCTTTACCTTTTTCTA+TGG | - | chr7.1:50921130-50921149 | MS.gene010982:CDS | 30.0% |
| !!! | TTGGCTTTACCTTTTTCTAT+GGG | - | chr7.1:50921131-50921150 | MS.gene010982:CDS | 30.0% |
| !!! | TTTGATGGTTTTAAAGTCCT+TGG | - | chr7.1:50920885-50920904 | MS.gene010982:intron | 30.0% |
| AACAAGCTCATCCAGTTAAT+TGG | + | chr7.1:50920452-50920471 | None:intergenic | 35.0% | |
| AACCATACTCTTTGTTGGAA+AGG | - | chr7.1:50921379-50921398 | MS.gene010982:CDS | 35.0% | |
| AAGAAACCTTTCCAACAAAG+AGG | + | chr7.1:50921432-50921451 | None:intergenic | 35.0% | |
| ACAATAGTCCCTTAAAAGGA+TGG | + | chr7.1:50919472-50919491 | None:intergenic | 35.0% | |
| AGCACAGTGTTTAACGATAA+CGG | + | chr7.1:50919134-50919153 | None:intergenic | 35.0% | |
| AGCTTCTAATTCTGAGTTTC+TGG | - | chr7.1:50921004-50921023 | MS.gene010982:intron | 35.0% | |
| ATAAGCAGATTGAGGGATAA+GGG | - | chr7.1:50919926-50919945 | MS.gene010982:intron | 35.0% | |
| ATAGTGCATTAGCAAAGATG+AGG | + | chr7.1:50920737-50920756 | None:intergenic | 35.0% | |
| ATCCCTCAATAATGTGACTT+TGG | - | chr7.1:50920209-50920228 | MS.gene010982:intron | 35.0% | |
| CAAACTTCCTCGTAAAAAAG+TGG | - | chr7.1:50921031-50921050 | MS.gene010982:intron | 35.0% | |
| CAAGTGTTTAGTGATGTTCA+TGG | + | chr7.1:50919069-50919088 | None:intergenic | 35.0% | |
| CACTATATTTCAAAGGAGTG+TGG | - | chr7.1:50920751-50920770 | MS.gene010982:intron | 35.0% | |
| CAGTTAATTGGCAAGACATT+AGG | + | chr7.1:50920440-50920459 | None:intergenic | 35.0% | |
| CAGTTTATCAGTTCGTTTGA+TGG | - | chr7.1:50920870-50920889 | MS.gene010982:intron | 35.0% | |
| CCTTATAAACAAGGCAATGA+TGG | - | chr7.1:50920912-50920931 | MS.gene010982:intron | 35.0% | |
| CTAATGTCTTGCCAATTAAC+TGG | - | chr7.1:50920438-50920457 | MS.gene010982:intron | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | + | chr7.1:50920905-50920924 | None:intergenic | 35.0% | |
| GATAAACTGATCATTCTTGC+TGG | + | chr7.1:50920859-50920878 | None:intergenic | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | + | chr7.1:50919353-50919372 | None:intergenic | 35.0% | |
| TACCTTTCCAACAAAGAGTA+TGG | + | chr7.1:50921384-50921403 | None:intergenic | 35.0% | |
| TAGTGCATTAGCAAAGATGA+GGG | + | chr7.1:50920736-50920755 | None:intergenic | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | - | chr7.1:50921148-50921167 | MS.gene010982:CDS | 35.0% | |
| TCATTCTTGCTGGTCATAAA+AGG | + | chr7.1:50920849-50920868 | None:intergenic | 35.0% | |
| TTCTTCCTGACGAAAAAGAT+GGG | - | chr7.1:50920958-50920977 | MS.gene010982:intron | 35.0% | |
| TTTCTTCCTGACGAAAAAGA+TGG | - | chr7.1:50920957-50920976 | MS.gene010982:intron | 35.0% | |
| ! | AGTGAATTTATGGGCTGAAA+AGG | - | chr7.1:50920653-50920672 | MS.gene010982:intron | 35.0% |
| ! | CTGATCAGAGAAGATTTTAG+TGG | - | chr7.1:50921356-50921375 | MS.gene010982:CDS | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | - | chr7.1:50920903-50920922 | MS.gene010982:intron | 35.0% |
| ! | GTTGTCAGCTTTGATTGATA+AGG | - | chr7.1:50920980-50920999 | MS.gene010982:intron | 35.0% |
| !! | ATCCTTTTAAGGGACTATTG+TGG | - | chr7.1:50919471-50919490 | MS.gene010982:CDS | 35.0% |
| !! | CCATCATTGCCTTGTTTATA+AGG | + | chr7.1:50920915-50920934 | None:intergenic | 35.0% |
| !! | GAAAGACTTCTGAAATATGC+CGG | + | chr7.1:50921207-50921226 | None:intergenic | 35.0% |
| !!! | GCTTGTCTTATTTTGTAGAC+AGG | + | chr7.1:50920333-50920352 | None:intergenic | 35.0% |
| AACTCGCACACACAACTATT+TGG | - | chr7.1:50919535-50919554 | MS.gene010982:CDS | 40.0% | |
| AAGCTGTTAACTGAGTCATG+TGG | + | chr7.1:50920708-50920727 | None:intergenic | 40.0% | |
| AAGGTAGTCAATCCTCTTGA+TGG | - | chr7.1:50921398-50921417 | MS.gene010982:CDS | 40.0% | |
| AGAAACAAGCTGAGAGCAAA+AGG | + | chr7.1:50919243-50919262 | None:intergenic | 40.0% | |
| AGCCACAATAGTCCCTTAAA+AGG | + | chr7.1:50919476-50919495 | None:intergenic | 40.0% | |
| AGCCTAACAATATCGGCAAT+CGG | - | chr7.1:50919711-50919730 | MS.gene010982:CDS | 40.0% | |
| AGTGATGTTCATGGAAACGT+TGG | + | chr7.1:50919060-50919079 | None:intergenic | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | - | chr7.1:50921374-50921393 | MS.gene010982:CDS | 40.0% | |
| ATAATCCCATATACACCTGC+AGG | - | chr7.1:50920086-50920105 | MS.gene010982:intron | 40.0% | |
| CATAAGCAGATTGAGGGATA+AGG | - | chr7.1:50919925-50919944 | MS.gene010982:intron | 40.0% | |
| CCTCGTAAAAAAGTGGAAGT+GGG | - | chr7.1:50921038-50921057 | MS.gene010982:intron | 40.0% | |
| CTAAACCTGCAGGTGTATAT+GGG | + | chr7.1:50920094-50920113 | None:intergenic | 40.0% | |
| GGTCCTTAGCCTAACAATAT+CGG | - | chr7.1:50919704-50919723 | MS.gene010982:CDS | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | + | chr7.1:50921143-50921162 | None:intergenic | 40.0% | |
| GTCAATCCTCTTTGTTGGAA+AGG | - | chr7.1:50921423-50921442 | MS.gene010982:CDS | 40.0% | |
| TAAGCAGATTGAGGGATAAG+GGG | - | chr7.1:50919927-50919946 | MS.gene010982:intron | 40.0% | |
| TCCTCGTAAAAAAGTGGAAG+TGG | - | chr7.1:50921037-50921056 | MS.gene010982:intron | 40.0% | |
| TCTAAACCTGCAGGTGTATA+TGG | + | chr7.1:50920095-50920114 | None:intergenic | 40.0% | |
| TCTACATTCATGGACGAACA+TGG | - | chr7.1:50919502-50919521 | MS.gene010982:CDS | 40.0% | |
| TCTCAATGGCAACTCAATCA+AGG | - | chr7.1:50920821-50920840 | MS.gene010982:intron | 40.0% | |
| TGGTAGTCAATCCTCTTTGT+TGG | - | chr7.1:50921418-50921437 | MS.gene010982:CDS | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | + | chr7.1:50919344-50919363 | None:intergenic | 40.0% | |
| TTGCCGATATTGTTAGGCTA+AGG | + | chr7.1:50919710-50919729 | None:intergenic | 40.0% | |
| ! | AAAGGATTTGAGATCACCTG+TGG | + | chr7.1:50919225-50919244 | None:intergenic | 40.0% |
| ! | GCTTTACCTTTTTCTATGGG+AGG | - | chr7.1:50921134-50921153 | MS.gene010982:CDS | 40.0% |
| ! | TGATTGAGTTGCCATTGAGA+AGG | + | chr7.1:50920821-50920840 | None:intergenic | 40.0% |
| ! | TGTTCATGGAAACGTTGGTT+AGG | + | chr7.1:50919055-50919074 | None:intergenic | 40.0% |
| ! | TTGCTCTCAGCTTGTTTCTT+CGG | - | chr7.1:50919244-50919263 | MS.gene010982:CDS | 40.0% |
| !!! | ATTTTGCTTGAAGGTGCTGT+TGG | + | chr7.1:50920057-50920076 | None:intergenic | 40.0% |
| ACTGTTGGCATGGCATTATG+CGG | - | chr7.1:50921266-50921285 | MS.gene010982:CDS | 45.0% | |
| CCATTGACGTAAGACAAGCA+AGG | + | chr7.1:50919299-50919318 | None:intergenic | 45.0% | |
| CCTTGCTTGTCTTACGTCAA+TGG | - | chr7.1:50919296-50919315 | MS.gene010982:CDS | 45.0% | |
| GAGGATTGACTACCATCAAG+AGG | + | chr7.1:50921413-50921432 | None:intergenic | 45.0% | |
| GGCTACTCGTTCTACATTCA+TGG | - | chr7.1:50919492-50919511 | MS.gene010982:CDS | 45.0% | |
| GGGAGGTTTGACAAAAATGG+TGG | - | chr7.1:50921151-50921170 | MS.gene010982:CDS | 45.0% | |
| GGGCTGAAAAGGAGACAAAA+GGG | - | chr7.1:50920664-50920683 | MS.gene010982:intron | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | - | chr7.1:50919304-50919323 | MS.gene010982:CDS | 45.0% | |
| TCAGCTACAAAGTCGATTGG+AGG | + | chr7.1:50921320-50921339 | None:intergenic | 45.0% | |
| TGCATTAGCAAAGATGAGGG+TGG | + | chr7.1:50920733-50920752 | None:intergenic | 45.0% | |
| TGGGCTGAAAAGGAGACAAA+AGG | - | chr7.1:50920663-50920682 | MS.gene010982:intron | 45.0% | |
| TGGTCAGCTACAAAGTCGAT+TGG | + | chr7.1:50921323-50921342 | None:intergenic | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | - | chr7.1:50919303-50919322 | MS.gene010982:CDS | 45.0% | |
| ! | ACAAAGTCGATTGGAGGTAC+CGG | + | chr7.1:50921314-50921333 | None:intergenic | 45.0% |
| ! | AGAAGGTACAAAAGCTGCAG+CGG | - | chr7.1:50921241-50921260 | MS.gene010982:CDS | 45.0% |
| ! | TGCAGCTGATTTCGTCAACA+AGG | - | chr7.1:50919397-50919416 | MS.gene010982:CDS | 45.0% |
| ! | TGCCGATTGCCGATATTGTT+AGG | + | chr7.1:50919716-50919735 | None:intergenic | 45.0% |
| !! | GACAACCCATCTTTTTCGTC+AGG | + | chr7.1:50920966-50920985 | None:intergenic | 45.0% |
| !!! | CCCACTTCCACTTTTTTACG+AGG | + | chr7.1:50921041-50921060 | None:intergenic | 45.0% |
| AAGTGGAAGTGGGCAAGTTC+AGG | - | chr7.1:50921048-50921067 | MS.gene010982:intron | 50.0% | |
| ACTGGAGGAAGGAGAGAAGT+TGG | + | chr7.1:50919196-50919215 | None:intergenic | 50.0% | |
| CGCAACATGTCTAAACCTGC+AGG | + | chr7.1:50920104-50920123 | None:intergenic | 50.0% | |
| CTGTTGGCATGGCATTATGC+GGG | - | chr7.1:50921267-50921286 | MS.gene010982:CDS | 50.0% | |
| GATCACCTGTGGATTCAGAC+TGG | + | chr7.1:50919214-50919233 | None:intergenic | 50.0% | |
| GCAGGTTTAGACATGTTGCG+TGG | - | chr7.1:50920104-50920123 | MS.gene010982:intron | 50.0% | |
| GTAAGACAAGCAAGGTCCAC+CGG | + | chr7.1:50919291-50919310 | None:intergenic | 50.0% | |
| GTGCTCAGTATGATCGCTAC+TGG | - | chr7.1:50919149-50919168 | MS.gene010982:CDS | 50.0% | |
| TGTGGATTCAGACTGGAGGA+AGG | + | chr7.1:50919207-50919226 | None:intergenic | 50.0% | |
| TTCCTCCAGTCTGAATCCAC+AGG | - | chr7.1:50919206-50919225 | MS.gene010982:CDS | 50.0% | |
| AAAGCTGCAGCGGTGACTGT+TGG | - | chr7.1:50921251-50921270 | MS.gene010982:CDS | 55.0% | |
| CACCTGTGGATTCAGACTGG+AGG | + | chr7.1:50919211-50919230 | None:intergenic | 55.0% | |
| !! | AAGTCGATTGGAGGTACCGG+AGG | + | chr7.1:50921311-50921330 | None:intergenic | 55.0% |
| !! | AGTCGATTGGAGGTACCGGA+GGG | + | chr7.1:50921310-50921329 | None:intergenic | 55.0% |
| !! | ATGATCGCTACTGGCTCCGA+GGG | - | chr7.1:50919158-50919177 | MS.gene010982:CDS | 55.0% |
| !! | GTTTCTTCGGTGCTCTCCGA+TGG | - | chr7.1:50919257-50919276 | MS.gene010982:CDS | 55.0% |
| !! | TATGATCGCTACTGGCTCCG+AGG | - | chr7.1:50919157-50919176 | MS.gene010982:CDS | 55.0% |
| !! | TTGGTTCTGTGTGCGACCCT+CGG | + | chr7.1:50919177-50919196 | None:intergenic | 55.0% |
| TGCAGCGGTGACTGTTGGCA+TGG | - | chr7.1:50921256-50921275 | MS.gene010982:CDS | 60.0% | |
| TGCTCCGTATAGACCCCCTC+CGG | - | chr7.1:50921292-50921311 | MS.gene010982:CDS | 60.0% | |
| ! | GGTACCGGAGGGGGTCTATA+CGG | + | chr7.1:50921299-50921318 | None:intergenic | 60.0% |
| !! | GTCGATTGGAGGTACCGGAG+GGG | + | chr7.1:50921309-50921328 | None:intergenic | 60.0% |
| !! | TCGATTGGAGGTACCGGAGG+GGG | + | chr7.1:50921308-50921327 | None:intergenic | 60.0% |
| GACAAGCAAGGTCCACCGGC+AGG | + | chr7.1:50919287-50919306 | None:intergenic | 65.0% | |
| CTCTCCGATGGCGCTCCTGC+CGG | - | chr7.1:50919269-50919288 | MS.gene010982:CDS | 70.0% | |
| !! | TCCACCGGCAGGAGCGCCAT+CGG | + | chr7.1:50919276-50919295 | None:intergenic | 70.0% |
| TCCGATGGCGCTCCTGCCGG+TGG | - | chr7.1:50919272-50919291 | MS.gene010982:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 50919017 | 50921466 | 50919017 | ID=MS.gene010982 |
| chr7.1 | mRNA | 50919017 | 50921466 | 50919017 | ID=MS.gene010982.t1;Parent=MS.gene010982 |
| chr7.1 | exon | 50921065 | 50921466 | 50921065 | ID=MS.gene010982.t1.exon1;Parent=MS.gene010982.t1 |
| chr7.1 | CDS | 50921065 | 50921466 | 50921065 | ID=cds.MS.gene010982.t1;Parent=MS.gene010982.t1 |
| chr7.1 | exon | 50919017 | 50919850 | 50919017 | ID=MS.gene010982.t1.exon2;Parent=MS.gene010982.t1 |
| chr7.1 | CDS | 50919017 | 50919850 | 50919017 | ID=cds.MS.gene010982.t1;Parent=MS.gene010982.t1 |
| Gene Sequence |
| Protein sequence |
