AlfalfaGEDB | MS.gene011762

M. sativa cultivar XinJiangDaYe / MS.gene011762

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011762.t1	XP_013457476.1	84.3	747	108	6	1	744	104	844	0.00E+00	1233.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011762.t1	O22187	44.6	722	347	14	2	703	112	800	1.6e-148	528.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011762.t1	A0A072UPA5	84.3	747	108	6	1	744	104	844	0.0e+00	1233.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene011762	MS.gene72138	PPI
MS.gene030390	MS.gene011762	PPI
MS.gene048810	MS.gene011762	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011762.t1	MTR_4g095042	84.358	748	106	7	1	744	104	844	0.0	1244
MS.gene011762.t1	MTR_4g095012	80.297	741	110	6	1	732	103	816	0.0	1149
MS.gene011762.t1	MTR_4g095032	75.469	746	119	6	1	744	102	785	0.0	1100
MS.gene011762.t1	MTR_4g095045	74.926	678	139	9	73	744	1	653	0.0	979
MS.gene011762.t1	MTR_4g095018	74.844	481	112	5	1	479	109	582	0.0	667
MS.gene011762.t1	MTR_6g048090	46.562	698	334	19	1	680	103	779	0.0	551
MS.gene011762.t1	MTR_4g095022	71.216	403	111	5	1	401	104	503	0.0	542
MS.gene011762.t1	MTR_2g080220	42.701	733	373	14	15	722	119	829	0.0	541
MS.gene011762.t1	MTR_4g061833	44.901	706	341	17	2	684	111	791	7.53e-178	530
MS.gene011762.t1	MTR_4g061930	44.901	706	341	17	2	684	111	791	7.53e-178	530

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011762.t1	AT2G23200	45.076	721	347	14	1	703	111	800	0.0	550
MS.gene011762.t1	AT5G24010	45.923	699	333	19	1	681	106	777	6.98e-179	533
MS.gene011762.t1	AT5G54380	42.161	759	377	19	2	721	105	840	2.08e-178	532
MS.gene011762.t1	AT3G46290	43.700	746	353	21	2	718	100	807	1.80e-177	529
MS.gene011762.t1	AT4G39110	44.950	703	329	18	2	676	131	803	3.31e-177	530
MS.gene011762.t1	AT5G61350	43.715	716	343	18	2	676	112	808	5.05e-176	526
MS.gene011762.t1	AT2G21480	44.160	702	336	17	2	676	130	802	1.56e-175	525
MS.gene011762.t1	AT5G59700	45.231	692	329	15	2	675	100	759	4.98e-169	507
MS.gene011762.t1	AT5G28680	42.177	735	330	23	1	676	101	799	9.33e-156	474
MS.gene011762.t1	AT5G28680	42.177	735	330	23	1	676	101	799	9.33e-156	474

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Find 145 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTAGATCATTTCCTC+AGG	0.533820	8.2:+24924288	MS.gene011762:CDS
AAACACCGTCTTAACGTAGG+CGG	0.735114	8.2:+24924023	MS.gene011762:CDS
AAAGGTTAGTCTTCCTGTGG+TGG	0.529806	8.2:+24924601	MS.gene011762:CDS
AAATCTGATGTTTATTCTTT+TGG	0.151712	8.2:+24925412	MS.gene011762:CDS
AAATTCACTGTTTCAGTTCC+TGG	0.285867	8.2:+24923732	MS.gene011762:CDS
AACAATGGTTGATGTGTTGT+GGG	0.521753	8.2:+24925654	MS.gene011762:CDS
AAGACCTCTAGCAGCACCAA+TGG	0.545836	8.2:-24925176	None:intergenic
AAGAGGATTATTGGAAAGGG+TGG	0.534402	8.2:+24924878	MS.gene011762:CDS
AAGGTGTATGTGACGAATCT+TGG	0.406173	8.2:-24925017	None:intergenic
AAGTGGATGGCACGTCTACT+GGG	0.522025	8.2:+24925794	MS.gene011762:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTAGATCATTTCCTC+AGG	+	chr8.2:24924288-24924307	MS.gene011762:CDS	30.0%
AATCCACAAAATGCTAAGAT+TGG	+	chr8.2:24924113-24924132	MS.gene011762:CDS	30.0%
ACATAAGAATGTTCATCAAG+AGG	-	chr8.2:24925322-24925341	None:intergenic	30.0%
ACTTATGGAAAAACAACTCA+AGG	+	chr8.2:24924776-24924795	MS.gene011762:CDS	30.0%
AGCCCATTTAAAAATGCATT+CGG	-	chr8.2:24924524-24924543	None:intergenic	30.0%
ATTAACAAATGCGAATGATG+AGG	-	chr8.2:24923871-24923890	None:intergenic	30.0%
ATTTCATGTGAAGCAAATCA+AGG	+	chr8.2:24925862-24925881	MS.gene011762:CDS	30.0%
CTCATCAAGCAATATATTAG+TGG	-	chr8.2:24925254-24925273	None:intergenic	30.0%
GAATCAGGGATTAAATTAAC+AGG	-	chr8.2:24923915-24923934	None:intergenic	30.0%
GATACTTGTTTATGAGTACA+TGG	+	chr8.2:24925078-24925097	MS.gene011762:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	24923678	24925915	24923678	ID=MS.gene011762
chr8.2	mRNA	24923678	24925915	24923678	ID=MS.gene011762.t1;Parent=MS.gene011762
chr8.2	exon	24923678	24925915	24923678	ID=MS.gene011762.t1.exon1;Parent=MS.gene011762.t1
chr8.2	CDS	24923678	24925915	24923678	ID=cds.MS.gene011762.t1;Parent=MS.gene011762.t1

Gene Sequence

>MS.gene011762

ATGGTACGTTTCCATTTCCTTTCATTCTCTACACCAACTAAACTTTCCACTGCAAAATTCACTGTTTCAGTTCCTGGTTTCATTCTGTTACAAAATTTCAACGCTGAAAACACCACCAACTCTCCTTTAGTAAAAGAGTATTACGTTAAAATCATTCGAAAAAGATTCAAAATCACTTTCACGCCTCAAACCTCATCATTCGCATTTGTTAATGCCATAGAACTCTTTATGCTCCCTGTTAATTTAATCCCTGATTCAGTCGCGCATTTTACTTACAAAGAATCTAGTGCTCCAGGCTTATCTAATTATAGTGGCGGTTTAAACTCACAACGAGCTTTGGAAACGAAACACCGTCTTAACGTAGGCGGTGATAATGTCACTAGAGAAGCCGATACATTATCAAGAGAATGGTTACGAGATGACAGATACATAACTAATCCACAAAATGCTAAGATTGGTTTCTTTGGAGGTGATATTAAACACGCTGCAAATGATGAATCTGATGGTCCAAATTCAAGTATCATTGGTCCAGATATTGTTTATAAAACTGCCCAAGAGAGTGCAAACGGTTCAAAAGGTTTAAACATAAGTTGGAGTGTTCCTGTGCAAAAAAATGTAGATCATTTCCTCAGGCTTCATTTCTGTGACATTTTTAGTGATCGACAGTCTGGTCTTACAACTTTCAATCTCTTCATTTATGACAGTTATGTTGTATATATCAATAATGACACTAGCCTGTCAATACAGATGCCTTATCATTATGATTTTGTGGTTCAATCCGATGGCTCTGGGATTTTGAAGGTTACAGTTGTACCTATTACTGATACGAACAAATCTGCCAAACCGAATGCATTTTTAAATGGGCTAGAACTAATGGAAGTGATTGAACAATCTAGTGAAATTCCCCCAGATGATATGGATTCAAAGGTTAGTCTTCCTGTGGTGGTGGGTTTGATCGTTGGTGGAGGTTTAGCTTTGGTTTCTGTTGTGGTGGTTATGTTTCTTTGGATTAGTAAAATAAGAATACAAAGGCCTGTTGAGATTTTCAATTTGATGCCGATTCCAACTGCCTCAGGAGGGATTTCTCATAGCAAATTAACTTATGGAAAAACAACTCAAGGCTCGCCTTTACCTAACATAAACCTTGGCTTGAAAATCTCCTTGCTTGACCTTCATATCGCCACGGAGAATTTTGATACGAAGAGGATTATTGGAAAGGGTGGTTTTGGAAATGTTTATAAGGGAGTTCTCAAGAATGGAATGAATGTGGCAGTGAAAAAAAGTGTGCCGGGTTCAGGTCAAGGACATCATGAATTTCAAACTGAGATAATGGTTTTGTCCAAGATTCGTCACATACACCTTGTTTCCTTGATAGGGTATTGTGATGAAAGGTGTGAGATGATACTTGTTTATGAGTACATGGAAAATGGGACACTTAGAGAGAATTTGTACAATACAAATTTGCCTTGCTTGACTTGGAAGCAAAGGCTTGAGATTTCCATTGGTGCTGCTAGAGGTCTTCATTACCTTCACAAAGGAGTAGCTGGTGGAATAATCCACCGTGATGTGAAATCCACTAATATATTGCTTGATGAGAATCTTGTAGCTAAAGTTGCTGATTTTGGTCTTTCAAGGACCGGTCCTCTTGATGAACATTCTTATGTCAGCACATGTGTTAAAGGGACTTTTGGGTATCTTGATCCTGATTACTTTAGATCACAACAGCTTACAGAAAAATCTGATGTTTATTCTTTTGGGGTGGTTCTACTTGAAGTGTTGTGCGCAAGACCAGCCATCGAATTGTCTTGTCCAAGTGAGCAAATCAATTTGGCTGAGTGGGGATTGCTTTGCAAAGACAAAGGGATACTTGAAGAGATCGTTGATCCTTCCATCAAGGCACAAATTAATCAAAACTCACATAGAATATTTAGTGAGACTGTGGAAAAATGCTTACAGGAGTATGGTTGTGATAGGCCAACAATGGTTGATGTGTTGTGGGACTTGGAATATGCTTTGCAGCTTCAGAGAGAACCACATGAGGATAGTTCTAGCAGTGCTTTTGCATCACTTCAATTGCCTCTTGTTCAGCGTCTACCTTCTTTGTCTACACTGGCTGAAGTGGATGGCACGTCTACTGGGAGGGTTGATGAAACTGAAAGTGCAGCGCTGACGATGCTAGACAGAATTTCATGTGAAGCAAATCAAGGTACAACAATCAACACGCAAGTGTCTTCGTGA

Protein sequence

>MS.gene011762.t1

MVRFHFLSFSTPTKLSTAKFTVSVPGFILLQNFNAENTTNSPLVKEYYVKIIRKRFKITFTPQTSSFAFVNAIELFMLPVNLIPDSVAHFTYKESSAPGLSNYSGGLNSQRALETKHRLNVGGDNVTREADTLSREWLRDDRYITNPQNAKIGFFGGDIKHAANDESDGPNSSIIGPDIVYKTAQESANGSKGLNISWSVPVQKNVDHFLRLHFCDIFSDRQSGLTTFNLFIYDSYVVYINNDTSLSIQMPYHYDFVVQSDGSGILKVTVVPITDTNKSAKPNAFLNGLELMEVIEQSSEIPPDDMDSKVSLPVVVGLIVGGGLALVSVVVVMFLWISKIRIQRPVEIFNLMPIPTASGGISHSKLTYGKTTQGSPLPNINLGLKISLLDLHIATENFDTKRIIGKGGFGNVYKGVLKNGMNVAVKKSVPGSGQGHHEFQTEIMVLSKIRHIHLVSLIGYCDERCEMILVYEYMENGTLRENLYNTNLPCLTWKQRLEISIGAARGLHYLHKGVAGGIIHRDVKSTNILLDENLVAKVADFGLSRTGPLDEHSYVSTCVKGTFGYLDPDYFRSQQLTEKSDVYSFGVVLLEVLCARPAIELSCPSEQINLAEWGLLCKDKGILEEIVDPSIKAQINQNSHRIFSETVEKCLQEYGCDRPTMVDVLWDLEYALQLQREPHEDSSSSAFASLQLPLVQRLPSLSTLAEVDGTSTGRVDETESAALTMLDRISCEANQGTTINTQVSS