Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011770.t1 | KEH31492.1 | 97 | 824 | 19 | 2 | 1 | 824 | 1 | 818 | 0.00E+00 | 1476.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011770.t1 | Q9M3H5 | 74.8 | 723 | 177 | 2 | 101 | 823 | 102 | 819 | 0.0e+00 | 1075.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011770.t1 | A0A072UP92 | 97.0 | 824 | 19 | 2 | 1 | 824 | 1 | 818 | 0.0e+00 | 1476.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene011770 | MS.gene043599 | PPI |
MS.gene011770 | MS.gene064361 | PPI |
MS.gene011770 | MS.gene36217 | PPI |
MS.gene011770 | MS.gene035831 | PPI |
MS.gene011770 | MS.gene89039 | PPI |
MS.gene011770 | MS.gene064391 | PPI |
MS.gene011770 | MS.gene36218 | PPI |
MS.gene011770 | MS.gene86378 | PPI |
MS.gene011770 | MS.gene060874 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011770.t1 | MTR_4g094985 | 96.966 | 824 | 19 | 3 | 1 | 824 | 1 | 818 | 0.0 | 1627 |
MS.gene011770.t1 | MTR_2g036380 | 28.414 | 637 | 388 | 14 | 158 | 786 | 27 | 603 | 1.13e-63 | 228 |
MS.gene011770.t1 | MTR_2g036380 | 28.414 | 637 | 388 | 14 | 158 | 786 | 117 | 693 | 3.39e-63 | 228 |
MS.gene011770.t1 | MTR_2g036380 | 28.822 | 569 | 345 | 12 | 224 | 786 | 27 | 541 | 1.20e-57 | 209 |
MS.gene011770.t1 | MTR_2g036380 | 29.137 | 556 | 334 | 12 | 237 | 786 | 9 | 510 | 3.60e-57 | 207 |
MS.gene011770.t1 | MTR_4g127580 | 26.512 | 645 | 396 | 12 | 157 | 781 | 109 | 695 | 2.12e-56 | 210 |
MS.gene011770.t1 | MTR_4g094232 | 29.580 | 524 | 329 | 13 | 261 | 775 | 391 | 883 | 5.31e-54 | 202 |
MS.gene011770.t1 | MTR_5g010420 | 29.535 | 623 | 375 | 21 | 168 | 764 | 362 | 946 | 3.06e-47 | 182 |
MS.gene011770.t1 | MTR_8g079250 | 28.045 | 624 | 384 | 19 | 169 | 764 | 369 | 955 | 1.05e-44 | 174 |
MS.gene011770.t1 | MTR_3g105190 | 29.119 | 522 | 322 | 11 | 260 | 760 | 354 | 848 | 1.19e-42 | 167 |
MS.gene011770.t1 | MTR_8g012390 | 28.702 | 547 | 309 | 16 | 243 | 760 | 420 | 914 | 6.98e-42 | 165 |
MS.gene011770.t1 | MTR_2g035840 | 25.419 | 716 | 418 | 19 | 118 | 764 | 287 | 955 | 1.63e-39 | 158 |
MS.gene011770.t1 | MTR_4g094695 | 25.417 | 720 | 418 | 21 | 118 | 764 | 283 | 956 | 4.22e-39 | 157 |
MS.gene011770.t1 | MTR_8g079250 | 26.577 | 523 | 328 | 16 | 169 | 670 | 369 | 856 | 1.44e-30 | 129 |
MS.gene011770.t1 | MTR_3g105190 | 27.896 | 423 | 260 | 8 | 260 | 662 | 354 | 751 | 2.53e-30 | 128 |
MS.gene011770.t1 | MTR_8g012390 | 26.696 | 457 | 257 | 13 | 243 | 670 | 420 | 827 | 2.82e-28 | 122 |
MS.gene011770.t1 | MTR_8g079250 | 29.967 | 307 | 194 | 8 | 169 | 460 | 369 | 669 | 1.61e-24 | 110 |
MS.gene011770.t1 | MTR_7g100110 | 27.053 | 207 | 109 | 7 | 602 | 767 | 638 | 843 | 5.16e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011770.t1 | AT4G37270 | 76.312 | 705 | 166 | 1 | 101 | 805 | 102 | 805 | 0.0 | 1096 |
MS.gene011770.t1 | AT4G30110 | 25.232 | 646 | 424 | 14 | 147 | 786 | 104 | 696 | 7.72e-53 | 199 |
MS.gene011770.t1 | AT4G30110 | 25.232 | 646 | 424 | 14 | 147 | 786 | 104 | 696 | 7.72e-53 | 199 |
MS.gene011770.t1 | AT5G21930 | 30.256 | 585 | 348 | 16 | 206 | 760 | 286 | 840 | 1.44e-51 | 195 |
MS.gene011770.t1 | AT5G21930 | 30.256 | 585 | 348 | 16 | 206 | 760 | 286 | 840 | 1.44e-51 | 195 |
MS.gene011770.t1 | AT2G19110 | 25.968 | 620 | 384 | 16 | 181 | 786 | 147 | 705 | 1.70e-51 | 196 |
MS.gene011770.t1 | AT2G19110 | 25.968 | 620 | 384 | 16 | 181 | 786 | 147 | 705 | 1.70e-51 | 196 |
MS.gene011770.t1 | AT2G19110 | 25.968 | 620 | 384 | 16 | 181 | 786 | 147 | 705 | 1.70e-51 | 196 |
MS.gene011770.t1 | AT5G21930 | 30.474 | 548 | 322 | 15 | 206 | 723 | 286 | 804 | 8.66e-49 | 186 |
MS.gene011770.t1 | AT4G33520 | 28.916 | 581 | 361 | 18 | 206 | 775 | 353 | 892 | 6.58e-48 | 184 |
MS.gene011770.t1 | AT4G33520 | 29.094 | 574 | 361 | 18 | 206 | 767 | 353 | 892 | 1.07e-47 | 183 |
MS.gene011770.t1 | AT5G44790 | 26.136 | 704 | 421 | 20 | 118 | 762 | 293 | 956 | 6.04e-45 | 175 |
MS.gene011770.t1 | AT1G63440 | 30.739 | 514 | 293 | 14 | 277 | 764 | 478 | 954 | 3.71e-44 | 172 |
MS.gene011770.t1 | AT5G21930 | 28.718 | 585 | 334 | 18 | 206 | 760 | 286 | 817 | 1.84e-41 | 164 |
MS.gene011770.t1 | AT4G30120 | 26.410 | 390 | 236 | 10 | 162 | 543 | 129 | 475 | 1.05e-31 | 131 |
MS.gene011770.t1 | AT4G30120 | 26.836 | 354 | 213 | 9 | 198 | 543 | 1 | 316 | 4.17e-30 | 123 |
Find 189 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAGAGGTTTGATAGAAAT+TGG | 0.118156 | 8.2:-25018498 | None:intergenic |
GGCTTCCCTTCCGTCAGTTT+TGG | 0.178850 | 8.2:+25026969 | MS.gene011770:CDS |
TCAATTGCTATTGCTGTTCT+TGG | 0.210359 | 8.2:+25021353 | MS.gene011770:CDS |
TATGATTATGATTATGAGTA+TGG | 0.221106 | 8.2:-25018593 | None:intergenic |
GGCATTGTCTAGCATATTCT+TGG | 0.228426 | 8.2:+25026948 | MS.gene011770:CDS |
AGTGAGCATCCATGTGTTAA+TGG | 0.260560 | 8.2:+25019081 | MS.gene011770:CDS |
TGCCCTTATAATTAATAAAA+AGG | 0.279604 | 8.2:+25024331 | MS.gene011770:CDS |
CAAAGGTGGCTGGATGAATT+TGG | 0.281364 | 8.2:+25021299 | MS.gene011770:CDS |
CGACCAGAATGAACGAGTTT+TGG | 0.294272 | 8.2:-25018845 | None:intergenic |
GCTATTAATGCATCTTCTTA+TGG | 0.295250 | 8.2:+25024290 | MS.gene011770:CDS |
TCCAGCCACCTTTGAAGTTT+AGG | 0.296474 | 8.2:-25021290 | None:intergenic |
GGATTTGATTCTTGTGGTTT+TGG | 0.298046 | 8.2:-25018445 | None:intergenic |
ACCATTGCATTTGATAAAAC+AGG | 0.313148 | 8.2:+25023220 | MS.gene011770:CDS |
GTCAATCCATTTGGTAGCTT+TGG | 0.315025 | 8.2:-25018712 | None:intergenic |
GCAACTTATCTTCAGGCTTC+AGG | 0.315496 | 8.2:-25025451 | None:intergenic |
TATTTGAAATCAAATGTATT+AGG | 0.327072 | 8.2:-25019933 | None:intergenic |
TCAAGAACAAGTGCAAATTC+TGG | 0.329012 | 8.2:-25019891 | None:intergenic |
ATGTTTAATCTTGCACATAT+TGG | 0.331244 | 8.2:+25019166 | MS.gene011770:CDS |
TGGTCGCATTTCCGTTGGTT+GGG | 0.332817 | 8.2:+25018862 | MS.gene011770:CDS |
ACTCAAAGGTGGACATGTTC+TGG | 0.334899 | 8.2:+25023177 | MS.gene011770:CDS |
AGAGAGGTTTGATAGAAATT+GGG | 0.342658 | 8.2:-25018497 | None:intergenic |
AAGGCAATTGAGCCTGTTTA+CGG | 0.342799 | 8.2:+25023271 | MS.gene011770:CDS |
AAAGGATATCTCAAGAGATA+TGG | 0.345113 | 8.2:+25025481 | MS.gene011770:CDS |
TGTCCAAAACTCGTTCATTC+TGG | 0.352789 | 8.2:+25018842 | MS.gene011770:CDS |
GGTTCTATCTACAGAGCCTT+AGG | 0.363004 | 8.2:+25022105 | MS.gene011770:CDS |
GACAGGTTTGATGAGTGATT+TGG | 0.363726 | 8.2:-25018823 | None:intergenic |
AAAGTTGGAGATAGAGTTCC+TGG | 0.368979 | 8.2:+25020406 | MS.gene011770:CDS |
CACTTGCTGCTGCAACTGTT+GGG | 0.374065 | 8.2:+25026664 | MS.gene011770:CDS |
CTGTAATATATCATGCTTCC+AGG | 0.374765 | 8.2:-25027509 | None:intergenic |
TGAAGTTGTCTGCCGAGATT+TGG | 0.379930 | 8.2:-25026781 | None:intergenic |
CATGATATATTACAGTTGAT+TGG | 0.380717 | 8.2:+25027517 | MS.gene011770:CDS |
TGCCTTGGCTGTGGCTCCAT+TGG | 0.384104 | 8.2:+25022152 | MS.gene011770:CDS |
AATCTAGACTCTCCTCTCTT+AGG | 0.385080 | 8.2:+25027548 | MS.gene011770:CDS |
TATGATTATGAGTATGGTTA+TGG | 0.386196 | 8.2:-25018587 | None:intergenic |
ATGATGGAGAATGAGGAATT+TGG | 0.390636 | 8.2:-25018526 | None:intergenic |
CTGGTCGCATTTCCGTTGGT+TGG | 0.392485 | 8.2:+25018861 | MS.gene011770:CDS |
AGTGAGTGAAATTTGGTAGA+AGG | 0.403086 | 8.2:-25018411 | None:intergenic |
ACATGACGCAACTTATCTTC+AGG | 0.418228 | 8.2:-25025458 | None:intergenic |
ATTCGCTAGGTCAATCCATT+TGG | 0.420166 | 8.2:-25018721 | None:intergenic |
GCACTTGCTGCTGCAACTGT+TGG | 0.421771 | 8.2:+25026663 | MS.gene011770:CDS |
TCTCTTAGGACAAATATAAC+AGG | 0.423503 | 8.2:+25027562 | MS.gene011770:CDS |
ATTACCATTGAGCACTTGAC+AGG | 0.431899 | 8.2:+25020361 | MS.gene011770:CDS |
ACAGGTTTGATGAGTGATTT+GGG | 0.433483 | 8.2:-25018822 | None:intergenic |
GATGTGAAGTGAGTGAAATT+TGG | 0.440429 | 8.2:-25018418 | None:intergenic |
TGTTGCGGCAGCCATGGAAA+AGG | 0.442091 | 8.2:+25023366 | MS.gene011770:CDS |
CTAATGCGATGACCGTAAAC+AGG | 0.447398 | 8.2:-25023283 | None:intergenic |
ACAGTTGCAGCAGCAAGTGC+TGG | 0.448739 | 8.2:-25026660 | None:intergenic |
TTGGTCCACTTGTATTTAAG+TGG | 0.454297 | 8.2:+25021372 | MS.gene011770:CDS |
TTTGAGTACTTTCCTGGTAG+AGG | 0.454663 | 8.2:+25023804 | MS.gene011770:CDS |
TACTGGTGGACTTGTATTCA+AGG | 0.458170 | 8.2:+25023252 | MS.gene011770:CDS |
ACCTAAACTTCAAAGGTGGC+TGG | 0.461717 | 8.2:+25021289 | MS.gene011770:CDS |
ACCCAAGTGATGCTTTCAAT+AGG | 0.465409 | 8.2:-25024208 | None:intergenic |
GTGAGTGAAATTTGGTAGAA+GGG | 0.465625 | 8.2:-25018410 | None:intergenic |
AGGAACTCTATCTCCAACTT+TGG | 0.466602 | 8.2:-25020404 | None:intergenic |
GGTTGATGTTAAAGAGTTGA+AGG | 0.467608 | 8.2:+25019860 | MS.gene011770:CDS |
CTGGAGGATAGGCCTCGTCC+AGG | 0.469698 | 8.2:+25025302 | MS.gene011770:CDS |
TCAAAATGATACCTTCCAAT+GGG | 0.470455 | 8.2:-25023400 | None:intergenic |
TTGCATTCCCACCTGTGAAA+AGG | 0.475193 | 8.2:+25023333 | MS.gene011770:CDS |
ATTTCTTCCATTGTGGATAA+CGG | 0.475920 | 8.2:+25026993 | MS.gene011770:CDS |
GGTCGCATTTCCGTTGGTTG+GGG | 0.477467 | 8.2:+25018863 | MS.gene011770:CDS |
AAACCTCTGGAGGCCAAAGT+TGG | 0.479488 | 8.2:+25020391 | MS.gene011770:CDS |
TGCAGCATCACCATGTGCCT+TGG | 0.480763 | 8.2:+25022137 | MS.gene011770:CDS |
GTATTTCACAAGTCGTTCAA+TGG | 0.480835 | 8.2:+25019839 | MS.gene011770:CDS |
TGGAGGATAGGCCTCGTCCA+GGG | 0.482722 | 8.2:+25025303 | MS.gene011770:CDS |
TTCCGTGTGATGATGTTAAC+TGG | 0.483577 | 8.2:+25025365 | MS.gene011770:CDS |
ATCACCATGTGCCTTGGCTG+TGG | 0.483615 | 8.2:+25022143 | MS.gene011770:CDS |
AACAACGAAGTTTATGATGA+TGG | 0.484541 | 8.2:-25018542 | None:intergenic |
GTTTCGCCAAAGCTACCAAA+TGG | 0.487686 | 8.2:+25018706 | MS.gene011770:CDS |
GGCGGTGCAAGGAACATAGA+TGG | 0.488667 | 8.2:+25020427 | MS.gene011770:CDS |
TCCAAAACTTGTTACCTCTC+CGG | 0.488744 | 8.2:-25020009 | None:intergenic |
CTGGACGAGGCCTATCCTCC+AGG | 0.491201 | 8.2:-25025301 | None:intergenic |
GTGGGATCATATGTCCTTGT+TGG | 0.491264 | 8.2:+25019984 | MS.gene011770:CDS |
CGTTGATTCACCTGGAGGAT+AGG | 0.491810 | 8.2:+25025291 | MS.gene011770:CDS |
CATTCTGGTCGCATTTCCGT+TGG | 0.493184 | 8.2:+25018857 | MS.gene011770:CDS |
TAAATGAACCATCCTGGTCC+TGG | 0.493505 | 8.2:+25027491 | MS.gene011770:CDS |
GAAATTGGGGATGTGCGAAT+AGG | 0.494228 | 8.2:-25018483 | None:intergenic |
GGCTTAATTATGGTTGGTGA+AGG | 0.494682 | 8.2:+25026624 | MS.gene011770:CDS |
ATCGATGATGCGAATCTCAC+TGG | 0.494904 | 8.2:+25018663 | MS.gene011770:CDS |
TGGTTCATTTAAACCACGTA+TGG | 0.495446 | 8.2:-25027479 | None:intergenic |
AATAGGAAAAGCGAGGTTAG+AGG | 0.496704 | 8.2:-25018466 | None:intergenic |
TGGGGAACGCTTTGGAAGGA+GGG | 0.501834 | 8.2:+25019131 | MS.gene011770:CDS |
GTTGCGGCAGCCATGGAAAA+GGG | 0.505287 | 8.2:+25023367 | MS.gene011770:CDS |
GTTAGAGGATTTGATTCTTG+TGG | 0.505400 | 8.2:-25018451 | None:intergenic |
AGTGATTTGGGCAAAGTATG+AGG | 0.506012 | 8.2:-25018810 | None:intergenic |
TTCAAAATGATACCTTCCAA+TGG | 0.509760 | 8.2:-25023401 | None:intergenic |
TCATATGTCCTTGTTGGTGC+CGG | 0.510228 | 8.2:+25019990 | MS.gene011770:CDS |
AGGAATTTGGAAGAATAGAG+AGG | 0.513522 | 8.2:-25018513 | None:intergenic |
GATTAAGCAAAATGTAGCTC+TGG | 0.514025 | 8.2:+25026927 | MS.gene011770:intron |
AAGGATATCTCAAGAGATAT+GGG | 0.514882 | 8.2:+25025482 | MS.gene011770:CDS |
TGCTGTTAACAGTAGCAGTA+AGG | 0.516956 | 8.2:-25023827 | None:intergenic |
AACCTATTGAAAGCATCACT+TGG | 0.517138 | 8.2:+25024206 | MS.gene011770:CDS |
CTACAGAGCCTTAGGGCTCA+TGG | 0.522521 | 8.2:+25022113 | MS.gene011770:CDS |
TGACCTAGCGAATTTCTTGA+GGG | 0.523047 | 8.2:+25018731 | MS.gene011770:CDS |
CGGTCATCGCATTAGAAACA+AGG | 0.525626 | 8.2:+25023291 | MS.gene011770:CDS |
AAAGGAAGCTCTTGCTGTTG+CGG | 0.526765 | 8.2:+25023351 | MS.gene011770:CDS |
TTCCCCTGTCAAGTGCTCAA+TGG | 0.526856 | 8.2:-25020365 | None:intergenic |
AGATAAGTTGCGTCATGTAA+AGG | 0.529752 | 8.2:+25025463 | MS.gene011770:CDS |
ATGGGGAACGCTTTGGAAGG+AGG | 0.530613 | 8.2:+25019130 | MS.gene011770:CDS |
TCTTGCTGTTGCGGCAGCCA+TGG | 0.531269 | 8.2:+25023360 | MS.gene011770:CDS |
GTTATGATCGGTGTGATTTG+CGG | 0.532890 | 8.2:-25018565 | None:intergenic |
GAGAGGTTTGATAGAAATTG+GGG | 0.535581 | 8.2:-25018496 | None:intergenic |
GTTTATGATGATGGAGAATG+AGG | 0.537798 | 8.2:-25018533 | None:intergenic |
TCTCCAACTTTGGCCTCCAG+AGG | 0.537839 | 8.2:-25020394 | None:intergenic |
TTTGTTGATGCAGCTTGCAG+AGG | 0.543905 | 8.2:+25022084 | MS.gene011770:intron |
TATCGTGGACAGGAACCCTC+TGG | 0.544668 | 8.2:-25019956 | None:intergenic |
TTGACCTAGCGAATTTCTTG+AGG | 0.545240 | 8.2:+25018730 | MS.gene011770:CDS |
TATATCATGCTTCCAGGACC+AGG | 0.545479 | 8.2:-25027503 | None:intergenic |
GACAGGGGAAGTCAAACCTC+TGG | 0.545837 | 8.2:+25020378 | MS.gene011770:CDS |
GCAGGTCACGTTGATTCACC+TGG | 0.549731 | 8.2:+25025283 | MS.gene011770:intron |
TGGAAAACTTCACAATCTAC+AGG | 0.552595 | 8.2:-25020325 | None:intergenic |
ATCTCGGCAGACAACTTCAC+TGG | 0.558427 | 8.2:+25026785 | MS.gene011770:CDS |
AAGGGCACTACCCACCCCAT+TGG | 0.559044 | 8.2:+25023385 | MS.gene011770:CDS |
CATTCTGTATTGCCAAATCT+CGG | 0.561945 | 8.2:+25026769 | MS.gene011770:CDS |
TATATTACAGTTGATTGGCA+AGG | 0.564000 | 8.2:+25027522 | MS.gene011770:CDS |
TGAATAAACCTAAACTTCAA+AGG | 0.565264 | 8.2:+25021282 | MS.gene011770:CDS |
GTACCTGGTGTACTAAAGAA+TGG | 0.569445 | 8.2:-25021395 | None:intergenic |
CGAGATTTGGCAATACAGAA+TGG | 0.570862 | 8.2:-25026768 | None:intergenic |
ATGATACCTTCCAATGGGGT+GGG | 0.570870 | 8.2:-25023395 | None:intergenic |
AATGATACCTTCCAATGGGG+TGG | 0.571569 | 8.2:-25023396 | None:intergenic |
CCCACAGTTATATCGTGGAC+AGG | 0.573819 | 8.2:-25019966 | None:intergenic |
GTTCTATCTACAGAGCCTTA+GGG | 0.574940 | 8.2:+25022106 | MS.gene011770:CDS |
CCATTGCATTTGATAAAACA+GGG | 0.581955 | 8.2:+25023221 | MS.gene011770:CDS |
ATAGAGTTCCTGGCGGTGCA+AGG | 0.582278 | 8.2:+25020416 | MS.gene011770:CDS |
GTTTGTCTCAACTCCATACG+TGG | 0.582771 | 8.2:+25027466 | MS.gene011770:CDS |
TCTATGTTCCTTGCACCGCC+AGG | 0.583235 | 8.2:-25020424 | None:intergenic |
TGCTGCAACCATGAGCCCTA+AGG | 0.586386 | 8.2:-25022121 | None:intergenic |
TGCTACTGTTAACAGCATTG+AGG | 0.587811 | 8.2:+25023833 | MS.gene011770:CDS |
TGCACAGGAGCTGATTGCTG+TGG | 0.588322 | 8.2:-25022181 | None:intergenic |
AAAACAGGGACATTGACTAC+TGG | 0.589422 | 8.2:+25023235 | MS.gene011770:CDS |
TAAAATGAATTGCAGGGCTG+TGG | 0.592347 | 8.2:+25023734 | MS.gene011770:intron |
TGGCCATTCTTTAGTACACC+AGG | 0.592719 | 8.2:+25021392 | MS.gene011770:CDS |
GAAATCCCAAAACTGACGGA+AGG | 0.592946 | 8.2:-25026975 | None:intergenic |
TTACCATTGAGCACTTGACA+GGG | 0.593656 | 8.2:+25020362 | MS.gene011770:CDS |
GGAGGATAGGCCTCGTCCAG+GGG | 0.594240 | 8.2:+25025304 | MS.gene011770:CDS |
ACAGGGACATTGACTACTGG+TGG | 0.595895 | 8.2:+25023238 | MS.gene011770:CDS |
TTGTTATAGTCAGGAGCTGG+AGG | 0.596664 | 8.2:+25024179 | MS.gene011770:intron |
GTGGTTTAAATGAACCATCC+TGG | 0.596951 | 8.2:+25027485 | MS.gene011770:CDS |
AATGGCCACTTAAATACAAG+TGG | 0.597154 | 8.2:-25021377 | None:intergenic |
TTTATGGGGAACGCTTTGGA+AGG | 0.597574 | 8.2:+25019127 | MS.gene011770:CDS |
TAGTTTCTTACCCCAACCAA+CGG | 0.601581 | 8.2:-25018873 | None:intergenic |
TGGTAATTGTGGCACCGCCG+TGG | 0.601583 | 8.2:-25020345 | None:intergenic |
GTAGCAGTAAGGCCTCTACC+AGG | 0.601894 | 8.2:-25023816 | None:intergenic |
ACCTATTGAAAGCATCACTT+GGG | 0.602175 | 8.2:+25024207 | MS.gene011770:CDS |
CATCCATGTGTTAATGGCAA+TGG | 0.607256 | 8.2:+25019087 | MS.gene011770:CDS |
TGCCAATGGAGCCACAGCCA+AGG | 0.608775 | 8.2:-25022154 | None:intergenic |
TGTTATATTTGTCCTAAGAG+AGG | 0.609994 | 8.2:-25027560 | None:intergenic |
CTGCCATTGCCATTAACACA+TGG | 0.611691 | 8.2:-25019090 | None:intergenic |
CATCACAGGTAACAAAGACA+TGG | 0.612204 | 8.2:+25021210 | MS.gene011770:intron |
ATTGCTGTGGCATATGCCAA+TGG | 0.613253 | 8.2:-25022168 | None:intergenic |
CTGTGGTTGAACATAGTGAA+GGG | 0.614550 | 8.2:+25023751 | MS.gene011770:CDS |
GCACTACCCACCCCATTGGA+AGG | 0.620348 | 8.2:+25023389 | MS.gene011770:CDS |
ATTTGATTTCAAATACCAGA+GGG | 0.624066 | 8.2:+25019941 | MS.gene011770:CDS |
AAATCCCAAAACTGACGGAA+GGG | 0.625234 | 8.2:-25026974 | None:intergenic |
ATGCAGGTTCTCTTACATGA+AGG | 0.625523 | 8.2:+25027430 | MS.gene011770:intron |
GCTCCCTCAAGAAATTCGCT+AGG | 0.625944 | 8.2:-25018734 | None:intergenic |
GGAGCCACAGCCAAGGCACA+TGG | 0.627092 | 8.2:-25022147 | None:intergenic |
TGTCATACCGTTATCCACAA+TGG | 0.627678 | 8.2:-25027000 | None:intergenic |
CTACACACATCACAAATTCG+CGG | 0.629168 | 8.2:-25027602 | None:intergenic |
GCGTTACAGCAAAGTTGTTG+TGG | 0.631820 | 8.2:+25021325 | MS.gene011770:CDS |
AAGAGAGTTGCAAGTGCTGT+GGG | 0.633487 | 8.2:+25025407 | MS.gene011770:CDS |
TTGCAGGGCATATTACTCAA+AGG | 0.636255 | 8.2:+25023163 | MS.gene011770:intron |
AAAGAGAGTTGCAAGTGCTG+TGG | 0.636430 | 8.2:+25025406 | MS.gene011770:CDS |
GCTGTGGTTGAACATAGTGA+AGG | 0.636595 | 8.2:+25023750 | MS.gene011770:CDS |
ACAGGTAACAAAGACATGGA+AGG | 0.636600 | 8.2:+25021214 | MS.gene011770:intron |
TTACCTCTCCGGCACCAACA+AGG | 0.637057 | 8.2:-25019998 | None:intergenic |
CAGGGCATATTACTCAAAGG+TGG | 0.637638 | 8.2:+25023166 | MS.gene011770:intron |
TCCTGTCCACGATATAACTG+TGG | 0.638620 | 8.2:+25019965 | MS.gene011770:CDS |
CCTGTCCACGATATAACTGT+GGG | 0.640509 | 8.2:+25019966 | MS.gene011770:CDS |
TGTCCTTGTTGGTGCCGGAG+AGG | 0.641083 | 8.2:+25019995 | MS.gene011770:CDS |
AGATGGTAGAATAATTGTGA+AGG | 0.643350 | 8.2:+25020444 | MS.gene011770:CDS |
TCATGCTTCCAGGACCAGGA+TGG | 0.644114 | 8.2:-25027499 | None:intergenic |
ATAAACCTAAACTTCAAAGG+TGG | 0.646545 | 8.2:+25021285 | MS.gene011770:CDS |
GCTCTAATTGAAATGAGTGG+TGG | 0.647769 | 8.2:+25019055 | MS.gene011770:CDS |
ATGATCCCACAGTTATATCG+TGG | 0.648538 | 8.2:-25019971 | None:intergenic |
AGTATGGTTATGGTTATGAT+CGG | 0.651815 | 8.2:-25018577 | None:intergenic |
GGAAGAAATCCCAAAACTGA+CGG | 0.653538 | 8.2:-25026979 | None:intergenic |
CACCAGTTAACATCATCACA+CGG | 0.657313 | 8.2:-25025367 | None:intergenic |
CATTTGATTTCAAATACCAG+AGG | 0.660551 | 8.2:+25019940 | MS.gene011770:CDS |
TACCATTGAGCACTTGACAG+GGG | 0.669528 | 8.2:+25020363 | MS.gene011770:CDS |
GGAGTTGAGACAAACAAGCA+AGG | 0.669963 | 8.2:-25027458 | None:intergenic |
AGGGGAAGTCAAACCTCTGG+AGG | 0.671091 | 8.2:+25020381 | MS.gene011770:CDS |
CAGGTTCTCTTACATGAAGG+CGG | 0.671593 | 8.2:+25027433 | MS.gene011770:intron |
CAAGTGCTCAATGGTAATTG+TGG | 0.696113 | 8.2:-25020356 | None:intergenic |
GATGCTCTAATTGAAATGAG+TGG | 0.707083 | 8.2:+25019052 | MS.gene011770:CDS |
CAAAATGATACCTTCCAATG+GGG | 0.711661 | 8.2:-25023399 | None:intergenic |
TTTCAACAGAGACAGAAGGG+AGG | 0.724915 | 8.2:-25023779 | None:intergenic |
GGTCACGTTGATTCACCTGG+AGG | 0.730026 | 8.2:+25025286 | MS.gene011770:intron |
ATGTGCGAATAGGAAAAGCG+AGG | 0.738586 | 8.2:-25018473 | None:intergenic |
GTTGGAGATAGAGTTCCTGG+CGG | 0.796828 | 8.2:+25020409 | MS.gene011770:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 25018387 | 25027615 | 25018387 | ID=MS.gene011770 |
chr8.2 | mRNA | 25018387 | 25027615 | 25018387 | ID=MS.gene011770.t1;Parent=MS.gene011770 |
chr8.2 | exon | 25018387 | 25018884 | 25018387 | ID=MS.gene011770.t1.exon1;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25018387 | 25018884 | 25018387 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25019037 | 25019187 | 25019037 | ID=MS.gene011770.t1.exon2;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25019037 | 25019187 | 25019037 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25019832 | 25020016 | 25019832 | ID=MS.gene011770.t1.exon3;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25019832 | 25020016 | 25019832 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25020319 | 25020465 | 25020319 | ID=MS.gene011770.t1.exon4;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25020319 | 25020465 | 25020319 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25021218 | 25021413 | 25021218 | ID=MS.gene011770.t1.exon5;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25021218 | 25021413 | 25021218 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25022097 | 25022209 | 25022097 | ID=MS.gene011770.t1.exon6;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25022097 | 25022209 | 25022097 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25023169 | 25023410 | 25023169 | ID=MS.gene011770.t1.exon7;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25023169 | 25023410 | 25023169 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25023749 | 25023854 | 25023749 | ID=MS.gene011770.t1.exon8;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25023749 | 25023854 | 25023749 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25024188 | 25024352 | 25024188 | ID=MS.gene011770.t1.exon9;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25024188 | 25024352 | 25024188 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25025287 | 25025503 | 25025287 | ID=MS.gene011770.t1.exon10;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25025287 | 25025503 | 25025287 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25026619 | 25026806 | 25026619 | ID=MS.gene011770.t1.exon11;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25026619 | 25026806 | 25026619 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25026928 | 25027014 | 25026928 | ID=MS.gene011770.t1.exon12;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25026928 | 25027014 | 25026928 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
chr8.2 | exon | 25027436 | 25027615 | 25027436 | ID=MS.gene011770.t1.exon13;Parent=MS.gene011770.t1 |
chr8.2 | CDS | 25027436 | 25027615 | 25027436 | ID=cds.MS.gene011770.t1;Parent=MS.gene011770.t1 |
Gene Sequence |
Protein sequence |