Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012813.t1 | XP_003603151.2 | 93.8 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 9.50E-114 | 419.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012813.t1 | G7J7N1 | 93.8 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 6.8e-114 | 419.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene012813 | MS.gene00645 | PPI |
MS.gene047175 | MS.gene012813 | PPI |
MS.gene002071 | MS.gene012813 | PPI |
MS.gene072034 | MS.gene012813 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012813.t1 | MTR_3g104420 | 93.839 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 1.07e-149 | 417 |
MS.gene012813.t1 | MTR_1g016080 | 73.714 | 175 | 46 | 0 | 37 | 211 | 45 | 219 | 1.18e-85 | 255 |
MS.gene012813.t1 | MTR_2g006770 | 40.102 | 197 | 118 | 0 | 15 | 211 | 2 | 198 | 4.57e-53 | 172 |
MS.gene012813.t1 | MTR_8g089715 | 42.105 | 190 | 107 | 1 | 22 | 211 | 12 | 198 | 1.80e-51 | 167 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012813.t1 | AT5G11870 | 51.185 | 211 | 100 | 2 | 2 | 211 | 1 | 209 | 5.52e-76 | 229 |
MS.gene012813.t1 | AT5G11870 | 51.185 | 211 | 100 | 2 | 2 | 211 | 1 | 209 | 6.95e-76 | 229 |
MS.gene012813.t1 | AT1G71190 | 40.201 | 199 | 116 | 2 | 14 | 211 | 3 | 199 | 3.92e-46 | 154 |
MS.gene012813.t1 | AT1G71190 | 31.818 | 198 | 93 | 2 | 14 | 211 | 3 | 158 | 8.66e-32 | 116 |
Find 51 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATCCTGAGTGAGTATATT+TGG | 0.268982 | 3.3:-85879219 | None:intergenic |
GCTGACGTGCGCAATCTTCT+TGG | 0.280702 | 3.3:+85877338 | MS.gene012813:CDS |
CGTCTTGTGGGACACTTTAC+CGG | 0.312597 | 3.3:+85877739 | MS.gene012813:CDS |
CACAAGACGCGATTGTTATC+AGG | 0.322003 | 3.3:-85877725 | None:intergenic |
GATTCTGCCTCTAGCTATTC+CGG | 0.361113 | 3.3:+85879175 | MS.gene012813:CDS |
GTCAGCAAATTGGTGTTGAT+TGG | 0.367918 | 3.3:-85877321 | None:intergenic |
TTGGGAGAACGAGGGATTGT+AGG | 0.369925 | 3.3:-85877302 | None:intergenic |
GACATCACGTTCAATGTGTT+TGG | 0.375491 | 3.3:-85877446 | None:intergenic |
GATTGCGCACGTCAGCAAAT+TGG | 0.395050 | 3.3:-85877331 | None:intergenic |
GGAATGATAGGTGTGGCTTT+TGG | 0.404387 | 3.3:+85877680 | MS.gene012813:CDS |
ATGGAACTTTCTTCAACATA+AGG | 0.406115 | 3.3:+85877519 | MS.gene012813:CDS |
AATATACTCACTCAGGATAC+TGG | 0.422853 | 3.3:+85879222 | MS.gene012813:CDS |
TAGCTAGAGGCAGAATCAAC+TGG | 0.437228 | 3.3:-85879169 | None:intergenic |
GCAGAATTTATAATGATATC+CGG | 0.438014 | 3.3:+85879132 | MS.gene012813:intron |
TGTTTGATTTGTGAGAGATT+CGG | 0.453716 | 3.3:+85878930 | MS.gene012813:CDS |
TCAGCAAATTGGTGTTGATT+GGG | 0.457838 | 3.3:-85877320 | None:intergenic |
GTATTCTACAGTGGAATGAT+AGG | 0.461617 | 3.3:+85877668 | MS.gene012813:CDS |
TGTAATTGTCTTAGTTCTCA+AGG | 0.470219 | 3.3:+85877626 | MS.gene012813:intron |
TAACGAATCACCGGTTCAAA+AGG | 0.470277 | 3.3:+85877207 | MS.gene012813:CDS |
GATTGTTATCAGGCTTCAAA+TGG | 0.481848 | 3.3:-85877715 | None:intergenic |
TCAAGGAGAGGTGTGGAGTT+GGG | 0.485074 | 3.3:+85877643 | MS.gene012813:CDS |
ACTGGAACATCATGCAGAAC+CGG | 0.489043 | 3.3:-85879151 | None:intergenic |
TGATAACAATCGCGTCTTGT+GGG | 0.489073 | 3.3:+85877727 | MS.gene012813:CDS |
CTCAAGGAGAGGTGTGGAGT+TGG | 0.490682 | 3.3:+85877642 | MS.gene012813:CDS |
GAGAGATTCGGCCAGAGGGC+TGG | 0.491566 | 3.3:+85878942 | MS.gene012813:CDS |
TTCATGAAGTACACAAAGAA+TGG | 0.508918 | 3.3:-85878997 | None:intergenic |
TTCTTTGTGTACTTCATGAA+CGG | 0.513090 | 3.3:+85879000 | MS.gene012813:CDS |
TGGTGTTGATTGGGAGAACG+AGG | 0.520280 | 3.3:-85877311 | None:intergenic |
CTGATAACAATCGCGTCTTG+TGG | 0.527046 | 3.3:+85877726 | MS.gene012813:CDS |
TTCTCTCATTAAGATGATGG+TGG | 0.537417 | 3.3:+85878887 | MS.gene012813:intron |
TACAACACAAACCAGCCCTC+TGG | 0.539060 | 3.3:-85878953 | None:intergenic |
ACAAGACATAAGCGAGGAGA+AGG | 0.540303 | 3.3:-85878910 | None:intergenic |
CGCTCCAAATATACTCACTC+AGG | 0.557163 | 3.3:+85879215 | MS.gene012813:CDS |
CGAATCACCGGTTCAAAAGG+TGG | 0.570656 | 3.3:+85877210 | MS.gene012813:CDS |
GTTGAAGAAAGTTCCATCCA+AGG | 0.570827 | 3.3:-85877513 | None:intergenic |
GGTGTTGATTGGGAGAACGA+GGG | 0.581569 | 3.3:-85877310 | None:intergenic |
GGAAGAGAAATCATCGCACA+TGG | 0.594853 | 3.3:+85877231 | MS.gene012813:CDS |
TGGATTATGTAACGAATCAC+CGG | 0.595706 | 3.3:+85877198 | MS.gene012813:CDS |
TTGTGAGAGATTCGGCCAGA+GGG | 0.595968 | 3.3:+85878938 | MS.gene012813:CDS |
TTGTCTTAGTTCTCAAGGAG+AGG | 0.597068 | 3.3:+85877631 | MS.gene012813:intron |
CGGTACATAAATGCTACTGC+CGG | 0.597991 | 3.3:-85879194 | None:intergenic |
ATTCAGGGTTTAGTTACCTG+TGG | 0.608781 | 3.3:-85879252 | None:intergenic |
TTAGTTCTCAAGGAGAGGTG+TGG | 0.627309 | 3.3:+85877636 | MS.gene012813:intron |
TTTGTGAGAGATTCGGCCAG+AGG | 0.628776 | 3.3:+85878937 | MS.gene012813:CDS |
GAAGAGAAATCATCGCACAT+GGG | 0.643928 | 3.3:+85877232 | MS.gene012813:CDS |
CTGAGTGAGTATATTTGGAG+CGG | 0.653196 | 3.3:-85879214 | None:intergenic |
CTACAGTGGAATGATAGGTG+TGG | 0.667383 | 3.3:+85877673 | MS.gene012813:CDS |
GCTACTGCCGGAATAGCTAG+AGG | 0.675765 | 3.3:-85879182 | None:intergenic |
AAGAGAAATCATCGCACATG+GGG | 0.694731 | 3.3:+85877233 | MS.gene012813:CDS |
AATCAAACAAGACATAAGCG+AGG | 0.717182 | 3.3:-85878916 | None:intergenic |
AGTTGGGTAGTATTCTACAG+TGG | 0.721008 | 3.3:+85877659 | MS.gene012813:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATTGAATTTACCTT+TGG | - | chr3.3:85878264-85878283 | None:intergenic | 15.0% |
!!! | AAAGGTAAATTCAATTTTAT+TGG | + | chr3.3:85878263-85878282 | MS.gene012813:intron | 15.0% |
!! | AAAGAATATACTTAGATGTA+TGG | - | chr3.3:85878824-85878843 | None:intergenic | 20.0% |
!! | AAGAATATACTTAGATGTAT+GGG | - | chr3.3:85878823-85878842 | None:intergenic | 20.0% |
!! | AATAACTTGATGTACAAAAT+AGG | - | chr3.3:85879065-85879084 | None:intergenic | 20.0% |
!! | ATACATCTAAGTATATTCTT+TGG | + | chr3.3:85878823-85878842 | MS.gene012813:intron | 20.0% |
!! | TCAAAACAAACATAACTAAA+GGG | + | chr3.3:85878308-85878327 | MS.gene012813:intron | 20.0% |
!! | TTCAAAACAAACATAACTAA+AGG | + | chr3.3:85878307-85878326 | MS.gene012813:intron | 20.0% |
!! | TTGATACATTTACATAAAGT+GGG | + | chr3.3:85878161-85878180 | MS.gene012813:intron | 20.0% |
!! | TTTGATACATTTACATAAAG+TGG | + | chr3.3:85878160-85878179 | MS.gene012813:intron | 20.0% |
!!! | AAAATTGATTTTGACATGTT+TGG | - | chr3.3:85877996-85878015 | None:intergenic | 20.0% |
!!! | CTAAATATTATACATTTTCG+TGG | + | chr3.3:85878601-85878620 | MS.gene012813:intron | 20.0% |
! | AAAAGTGAGATGAATGTAAA+TGG | + | chr3.3:85877829-85877848 | MS.gene012813:intron | 25.0% |
! | AATTGTAATGTAACACTAAC+CGG | - | chr3.3:85877761-85877780 | None:intergenic | 25.0% |
! | ACTAATTAAGAATAGAATCG+CGG | - | chr3.3:85877562-85877581 | None:intergenic | 25.0% |
! | AGGATAAAAATCATTTGTAG+AGG | + | chr3.3:85878200-85878219 | MS.gene012813:intron | 25.0% |
! | CAAAACAAACATAACTAAAG+GGG | + | chr3.3:85878309-85878328 | MS.gene012813:intron | 25.0% |
! | GAATGTAAATGGTTTATGTT+TGG | + | chr3.3:85877840-85877859 | MS.gene012813:intron | 25.0% |
! | GCAGAATTTATAATGATATC+CGG | + | chr3.3:85879132-85879151 | MS.gene012813:intron | 25.0% |
! | TCAAATTGTGTTGAAAGATT+GGG | - | chr3.3:85878353-85878372 | None:intergenic | 25.0% |
! | TCAACACAATTTGAATTGTT+TGG | + | chr3.3:85878359-85878378 | MS.gene012813:intron | 25.0% |
! | TGCTTCTTCATGATATTTAT+CGG | + | chr3.3:85877409-85877428 | MS.gene012813:intron | 25.0% |
! | TTCAAATTGTGTTGAAAGAT+TGG | - | chr3.3:85878354-85878373 | None:intergenic | 25.0% |
!! | CAAATTAGAATTGATTCCAA+AGG | + | chr3.3:85878245-85878264 | MS.gene012813:intron | 25.0% |
!!! | AAATTTCCCATTTTTAGTTG+TGG | + | chr3.3:85877469-85877488 | MS.gene012813:CDS | 25.0% |
!!! | AATTTCCCATTTTTAGTTGT+GGG | + | chr3.3:85877470-85877489 | MS.gene012813:CDS | 25.0% |
!!! | ATTTTGATTAGATCGGAAAA+CGG | + | chr3.3:85878755-85878774 | MS.gene012813:intron | 25.0% |
!!! | GGTTTGTATTTTTTGTAGTT+TGG | + | chr3.3:85878380-85878399 | MS.gene012813:intron | 25.0% |
AAAACACCCACAACTAAAAA+TGG | - | chr3.3:85877479-85877498 | None:intergenic | 30.0% | |
AAACACCCACAACTAAAAAT+GGG | - | chr3.3:85877478-85877497 | None:intergenic | 30.0% | |
AATTCTGAGTACAAAGAAGT+AGG | - | chr3.3:85877370-85877389 | None:intergenic | 30.0% | |
ATGGAACTTTCTTCAACATA+AGG | + | chr3.3:85877519-85877538 | MS.gene012813:CDS | 30.0% | |
CATAAGTTTGAATCCATGTT+TGG | - | chr3.3:85878046-85878065 | None:intergenic | 30.0% | |
CCGATCTAATCAAAATCAAT+CGG | - | chr3.3:85878751-85878770 | None:intergenic | 30.0% | |
CTAATTAAGAATAGAATCGC+GGG | - | chr3.3:85877561-85877580 | None:intergenic | 30.0% | |
TACATTTACATAAAGTGGGT+TGG | + | chr3.3:85878165-85878184 | MS.gene012813:intron | 30.0% | |
TTCATGAAGTACACAAAGAA+TGG | - | chr3.3:85879000-85879019 | None:intergenic | 30.0% | |
TTCTTTGTGTACTTCATGAA+CGG | + | chr3.3:85879000-85879019 | MS.gene012813:CDS | 30.0% | |
! | CAAAATCAATCGGTTTAAGT+TGG | - | chr3.3:85878741-85878760 | None:intergenic | 30.0% |
! | CTTTTCTCTCATTAAGATGA+TGG | + | chr3.3:85878884-85878903 | MS.gene012813:intron | 30.0% |
! | TGTAATTGTCTTAGTTCTCA+AGG | + | chr3.3:85877626-85877645 | MS.gene012813:intron | 30.0% |
!! | TGATATTTATCGGTTTCAAC+AGG | + | chr3.3:85877419-85877438 | MS.gene012813:intron | 30.0% |
!! | TGTTTGATTTGTGAGAGATT+CGG | + | chr3.3:85878930-85878949 | MS.gene012813:CDS | 30.0% |
!! | TGTTTTGAATGAGACATGTT+TGG | - | chr3.3:85878296-85878315 | None:intergenic | 30.0% |
!! | TTTTGATTAGATCGGAAAAC+GGG | + | chr3.3:85878756-85878775 | MS.gene012813:intron | 30.0% |
!!! | ATTTTTAGTTGTGGGTGTTT+TGG | + | chr3.3:85877478-85877497 | MS.gene012813:CDS | 30.0% |
!!! | CCGATTGATTTTGATTAGAT+CGG | + | chr3.3:85878748-85878767 | MS.gene012813:intron | 30.0% |
!!! | TTTTTAGTTGTGGGTGTTTT+GGG | + | chr3.3:85877479-85877498 | MS.gene012813:CDS | 30.0% |
AACATAACTAAAGGGGTTCT+CGG | + | chr3.3:85878316-85878335 | MS.gene012813:intron | 35.0% | |
AATATACTCACTCAGGATAC+TGG | + | chr3.3:85879222-85879241 | MS.gene012813:CDS | 35.0% | |
AATCAAACAAGACATAAGCG+AGG | - | chr3.3:85878919-85878938 | None:intergenic | 35.0% | |
AATTATGCATGCTCCAAACA+TGG | + | chr3.3:85878030-85878049 | MS.gene012813:intron | 35.0% | |
AATTCTGTATGCTAGTTGGT+TGG | + | chr3.3:85879107-85879126 | MS.gene012813:intron | 35.0% | |
ACCTGAATCAACTCAATGTT+TGG | + | chr3.3:85878688-85878707 | MS.gene012813:intron | 35.0% | |
CCTGAATCAACTCAATGTTT+GGG | + | chr3.3:85878689-85878708 | MS.gene012813:intron | 35.0% | |
GATTGTTATCAGGCTTCAAA+TGG | - | chr3.3:85877718-85877737 | None:intergenic | 35.0% | |
GTATCCTGAGTGAGTATATT+TGG | - | chr3.3:85879222-85879241 | None:intergenic | 35.0% | |
GTATTCTACAGTGGAATGAT+AGG | + | chr3.3:85877668-85877687 | MS.gene012813:CDS | 35.0% | |
TACTTAGATGTATGGGTAAG+TGG | - | chr3.3:85878816-85878835 | None:intergenic | 35.0% | |
TGGATTATGTAACGAATCAC+CGG | + | chr3.3:85877198-85877217 | MS.gene012813:CDS | 35.0% | |
! | GCATGCATAATTGATTTCAG+AGG | - | chr3.3:85878022-85878041 | None:intergenic | 35.0% |
! | TTCTCTCATTAAGATGATGG+TGG | + | chr3.3:85878887-85878906 | MS.gene012813:intron | 35.0% |
!! | AAACTTGAAGTGGTTTGGTT+CGG | + | chr3.3:85878429-85878448 | MS.gene012813:intron | 35.0% |
!! | ATTGAGTTGATTCAGGTGTT+AGG | - | chr3.3:85878685-85878704 | None:intergenic | 35.0% |
!! | TCAGCAAATTGGTGTTGATT+GGG | - | chr3.3:85877323-85877342 | None:intergenic | 35.0% |
AAGAGAAATCATCGCACATG+GGG | + | chr3.3:85877233-85877252 | MS.gene012813:CDS | 40.0% | |
ACATAACTAAAGGGGTTCTC+GGG | + | chr3.3:85878317-85878336 | MS.gene012813:intron | 40.0% | |
AGTTGGGTAGTATTCTACAG+TGG | + | chr3.3:85877659-85877678 | MS.gene012813:CDS | 40.0% | |
CAAGCAAACTTGAAGTGGTT+TGG | + | chr3.3:85878424-85878443 | MS.gene012813:intron | 40.0% | |
CAGGTTTGAATCAATTCTCG+AGG | + | chr3.3:85877945-85877964 | MS.gene012813:intron | 40.0% | |
CTGAGTGAGTATATTTGGAG+CGG | - | chr3.3:85879217-85879236 | None:intergenic | 40.0% | |
GAAGAGAAATCATCGCACAT+GGG | + | chr3.3:85877232-85877251 | MS.gene012813:CDS | 40.0% | |
GACATCACGTTCAATGTGTT+TGG | - | chr3.3:85877449-85877468 | None:intergenic | 40.0% | |
GCTGAATTCTGTATGCTAGT+TGG | + | chr3.3:85879103-85879122 | MS.gene012813:intron | 40.0% | |
GTTGAAGAAAGTTCCATCCA+AGG | - | chr3.3:85877516-85877535 | None:intergenic | 40.0% | |
TAAGAATAGAATCGCGGGAA+TGG | - | chr3.3:85877556-85877575 | None:intergenic | 40.0% | |
TCTGAGTACAAAGAAGTAGG+TGG | - | chr3.3:85877367-85877386 | None:intergenic | 40.0% | |
TGATAACAATCGCGTCTTGT+GGG | + | chr3.3:85877727-85877746 | MS.gene012813:CDS | 40.0% | |
! | AAGCGACAAATACTAGCTTC+AGG | + | chr3.3:85877926-85877945 | MS.gene012813:intron | 40.0% |
! | CAAACCACTTCAAGTTTGCT+TGG | - | chr3.3:85878426-85878445 | None:intergenic | 40.0% |
! | CACATTTGGGTTCAAAGTGT+TGG | + | chr3.3:85878555-85878574 | MS.gene012813:intron | 40.0% |
! | TTCAAGTTTGCTTGGTTGGT+TGG | - | chr3.3:85878418-85878437 | None:intergenic | 40.0% |
! | TTCTCTTCCACCTTTTGAAC+CGG | - | chr3.3:85877220-85877239 | None:intergenic | 40.0% |
! | TTGTCTTAGTTCTCAAGGAG+AGG | + | chr3.3:85877631-85877650 | MS.gene012813:intron | 40.0% |
!! | AATCCAGAAGTGCTCACATT+TGG | + | chr3.3:85878541-85878560 | MS.gene012813:intron | 40.0% |
!! | ATCCAGAAGTGCTCACATTT+GGG | + | chr3.3:85878542-85878561 | MS.gene012813:intron | 40.0% |
!! | CCCAAACATTGAGTTGATTC+AGG | - | chr3.3:85878692-85878711 | None:intergenic | 40.0% |
!! | GTCAGCAAATTGGTGTTGAT+TGG | - | chr3.3:85877324-85877343 | None:intergenic | 40.0% |
!! | TAACGAATCACCGGTTCAAA+AGG | + | chr3.3:85877207-85877226 | MS.gene012813:CDS | 40.0% |
!!! | TTTGGGCTTTGTTTTTGCCT+TGG | + | chr3.3:85877496-85877515 | MS.gene012813:CDS | 40.0% |
AAATCAACCAACCTGACGCA+TGG | + | chr3.3:85878787-85878806 | MS.gene012813:intron | 45.0% | |
AACCCAAATGTGAGCACTTC+TGG | - | chr3.3:85878547-85878566 | None:intergenic | 45.0% | |
ACAAGACATAAGCGAGGAGA+AGG | - | chr3.3:85878913-85878932 | None:intergenic | 45.0% | |
ACTGGAACATCATGCAGAAC+CGG | - | chr3.3:85879154-85879173 | None:intergenic | 45.0% | |
CACAAGACGCGATTGTTATC+AGG | - | chr3.3:85877728-85877747 | None:intergenic | 45.0% | |
CATGTTTGGCTGTTCTCAAG+TGG | - | chr3.3:85877982-85878001 | None:intergenic | 45.0% | |
CCAACCAAGCAAACTTGAAG+TGG | + | chr3.3:85878419-85878438 | MS.gene012813:intron | 45.0% | |
CGCTCCAAATATACTCACTC+AGG | + | chr3.3:85879215-85879234 | MS.gene012813:CDS | 45.0% | |
CGGTACATAAATGCTACTGC+CGG | - | chr3.3:85879197-85879216 | None:intergenic | 45.0% | |
CTACAGTGGAATGATAGGTG+TGG | + | chr3.3:85877673-85877692 | MS.gene012813:CDS | 45.0% | |
CTGATAACAATCGCGTCTTG+TGG | + | chr3.3:85877726-85877745 | MS.gene012813:CDS | 45.0% | |
GATTCTGCCTCTAGCTATTC+CGG | + | chr3.3:85879175-85879194 | MS.gene012813:CDS | 45.0% | |
GGAAGAGAAATCATCGCACA+TGG | + | chr3.3:85877231-85877250 | MS.gene012813:CDS | 45.0% | |
TAGCTAGAGGCAGAATCAAC+TGG | - | chr3.3:85879172-85879191 | None:intergenic | 45.0% | |
! | CCACTTCAAGTTTGCTTGGT+TGG | - | chr3.3:85878422-85878441 | None:intergenic | 45.0% |
! | GGAATGATAGGTGTGGCTTT+TGG | + | chr3.3:85877680-85877699 | MS.gene012813:CDS | 45.0% |
! | TGGGTTGGACAATAGCTTTG+AGG | + | chr3.3:85878180-85878199 | MS.gene012813:intron | 45.0% |
! | TTAGTTCTCAAGGAGAGGTG+TGG | + | chr3.3:85877636-85877655 | MS.gene012813:intron | 45.0% |
!!! | GGATACTGGTTTTTGTCCAC+AGG | + | chr3.3:85879236-85879255 | MS.gene012813:CDS | 45.0% |
!!! | GGCTTTGTTTTTGCCTTGGA+TGG | + | chr3.3:85877500-85877519 | MS.gene012813:CDS | 45.0% |
CGTCTTGTGGGACACTTTAC+CGG | + | chr3.3:85877739-85877758 | MS.gene012813:CDS | 50.0% | |
GATTGCGCACGTCAGCAAAT+TGG | - | chr3.3:85877334-85877353 | None:intergenic | 50.0% | |
GTAAGTGGTAACCATGCGTC+AGG | - | chr3.3:85878801-85878820 | None:intergenic | 50.0% | |
TACAACACAAACCAGCCCTC+TGG | - | chr3.3:85878956-85878975 | None:intergenic | 50.0% | |
TTGGGAGAACGAGGGATTGT+AGG | - | chr3.3:85877305-85877324 | None:intergenic | 50.0% | |
TTGTGAGAGATTCGGCCAGA+GGG | + | chr3.3:85878938-85878957 | MS.gene012813:CDS | 50.0% | |
TTTGTGAGAGATTCGGCCAG+AGG | + | chr3.3:85878937-85878956 | MS.gene012813:CDS | 50.0% | |
! | TCAAGGAGAGGTGTGGAGTT+GGG | + | chr3.3:85877643-85877662 | MS.gene012813:CDS | 50.0% |
!! | CGAATCACCGGTTCAAAAGG+TGG | + | chr3.3:85877210-85877229 | MS.gene012813:CDS | 50.0% |
!! | GGTGTTGATTGGGAGAACGA+GGG | - | chr3.3:85877313-85877332 | None:intergenic | 50.0% |
!! | TGGTGTTGATTGGGAGAACG+AGG | - | chr3.3:85877314-85877333 | None:intergenic | 50.0% |
CTAAAGGGGTTCTCGGGTAC+TGG | + | chr3.3:85878323-85878342 | MS.gene012813:intron | 55.0% | |
GCTACTGCCGGAATAGCTAG+AGG | - | chr3.3:85879185-85879204 | None:intergenic | 55.0% | |
GCTGACGTGCGCAATCTTCT+TGG | + | chr3.3:85877338-85877357 | MS.gene012813:CDS | 55.0% | |
GTGGTAACCATGCGTCAGGT+TGG | - | chr3.3:85878797-85878816 | None:intergenic | 55.0% | |
! | CTCAAGGAGAGGTGTGGAGT+TGG | + | chr3.3:85877642-85877661 | MS.gene012813:CDS | 55.0% |
GAGAGATTCGGCCAGAGGGC+TGG | + | chr3.3:85878942-85878961 | MS.gene012813:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 85877194 | 85879265 | 85877194 | ID=MS.gene012813 |
chr3.3 | mRNA | 85877194 | 85879265 | 85877194 | ID=MS.gene012813.t1;Parent=MS.gene012813 |
chr3.3 | exon | 85877194 | 85877359 | 85877194 | ID=MS.gene012813.t1.exon1;Parent=MS.gene012813.t1 |
chr3.3 | CDS | 85877194 | 85877359 | 85877194 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
chr3.3 | exon | 85877441 | 85877540 | 85877441 | ID=MS.gene012813.t1.exon2;Parent=MS.gene012813.t1 |
chr3.3 | CDS | 85877441 | 85877540 | 85877441 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
chr3.3 | exon | 85877640 | 85877760 | 85877640 | ID=MS.gene012813.t1.exon3;Parent=MS.gene012813.t1 |
chr3.3 | CDS | 85877640 | 85877760 | 85877640 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
chr3.3 | exon | 85878900 | 85879021 | 85878900 | ID=MS.gene012813.t1.exon4;Parent=MS.gene012813.t1 |
chr3.3 | CDS | 85878900 | 85879021 | 85878900 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
chr3.3 | exon | 85879136 | 85879265 | 85879136 | ID=MS.gene012813.t1.exon5;Parent=MS.gene012813.t1 |
chr3.3 | CDS | 85879136 | 85879265 | 85879136 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
Gene Sequence |
Protein sequence |