Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012813.t1 | XP_003603151.2 | 93.8 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 9.50E-114 | 419.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012813.t1 | G7J7N1 | 93.8 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 6.8e-114 | 419.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012813 | MS.gene00645 | PPI |
| MS.gene047175 | MS.gene012813 | PPI |
| MS.gene002071 | MS.gene012813 | PPI |
| MS.gene072034 | MS.gene012813 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012813.t1 | MTR_3g104420 | 93.839 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 1.07e-149 | 417 |
| MS.gene012813.t1 | MTR_1g016080 | 73.714 | 175 | 46 | 0 | 37 | 211 | 45 | 219 | 1.18e-85 | 255 |
| MS.gene012813.t1 | MTR_2g006770 | 40.102 | 197 | 118 | 0 | 15 | 211 | 2 | 198 | 4.57e-53 | 172 |
| MS.gene012813.t1 | MTR_8g089715 | 42.105 | 190 | 107 | 1 | 22 | 211 | 12 | 198 | 1.80e-51 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012813.t1 | AT5G11870 | 51.185 | 211 | 100 | 2 | 2 | 211 | 1 | 209 | 5.52e-76 | 229 |
| MS.gene012813.t1 | AT5G11870 | 51.185 | 211 | 100 | 2 | 2 | 211 | 1 | 209 | 6.95e-76 | 229 |
| MS.gene012813.t1 | AT1G71190 | 40.201 | 199 | 116 | 2 | 14 | 211 | 3 | 199 | 3.92e-46 | 154 |
| MS.gene012813.t1 | AT1G71190 | 31.818 | 198 | 93 | 2 | 14 | 211 | 3 | 158 | 8.66e-32 | 116 |
Find 51 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCCTGAGTGAGTATATT+TGG | 0.268982 | 3.3:-85879219 | None:intergenic |
| GCTGACGTGCGCAATCTTCT+TGG | 0.280702 | 3.3:+85877338 | MS.gene012813:CDS |
| CGTCTTGTGGGACACTTTAC+CGG | 0.312597 | 3.3:+85877739 | MS.gene012813:CDS |
| CACAAGACGCGATTGTTATC+AGG | 0.322003 | 3.3:-85877725 | None:intergenic |
| GATTCTGCCTCTAGCTATTC+CGG | 0.361113 | 3.3:+85879175 | MS.gene012813:CDS |
| GTCAGCAAATTGGTGTTGAT+TGG | 0.367918 | 3.3:-85877321 | None:intergenic |
| TTGGGAGAACGAGGGATTGT+AGG | 0.369925 | 3.3:-85877302 | None:intergenic |
| GACATCACGTTCAATGTGTT+TGG | 0.375491 | 3.3:-85877446 | None:intergenic |
| GATTGCGCACGTCAGCAAAT+TGG | 0.395050 | 3.3:-85877331 | None:intergenic |
| GGAATGATAGGTGTGGCTTT+TGG | 0.404387 | 3.3:+85877680 | MS.gene012813:CDS |
| ATGGAACTTTCTTCAACATA+AGG | 0.406115 | 3.3:+85877519 | MS.gene012813:CDS |
| AATATACTCACTCAGGATAC+TGG | 0.422853 | 3.3:+85879222 | MS.gene012813:CDS |
| TAGCTAGAGGCAGAATCAAC+TGG | 0.437228 | 3.3:-85879169 | None:intergenic |
| GCAGAATTTATAATGATATC+CGG | 0.438014 | 3.3:+85879132 | MS.gene012813:intron |
| TGTTTGATTTGTGAGAGATT+CGG | 0.453716 | 3.3:+85878930 | MS.gene012813:CDS |
| TCAGCAAATTGGTGTTGATT+GGG | 0.457838 | 3.3:-85877320 | None:intergenic |
| GTATTCTACAGTGGAATGAT+AGG | 0.461617 | 3.3:+85877668 | MS.gene012813:CDS |
| TGTAATTGTCTTAGTTCTCA+AGG | 0.470219 | 3.3:+85877626 | MS.gene012813:intron |
| TAACGAATCACCGGTTCAAA+AGG | 0.470277 | 3.3:+85877207 | MS.gene012813:CDS |
| GATTGTTATCAGGCTTCAAA+TGG | 0.481848 | 3.3:-85877715 | None:intergenic |
| TCAAGGAGAGGTGTGGAGTT+GGG | 0.485074 | 3.3:+85877643 | MS.gene012813:CDS |
| ACTGGAACATCATGCAGAAC+CGG | 0.489043 | 3.3:-85879151 | None:intergenic |
| TGATAACAATCGCGTCTTGT+GGG | 0.489073 | 3.3:+85877727 | MS.gene012813:CDS |
| CTCAAGGAGAGGTGTGGAGT+TGG | 0.490682 | 3.3:+85877642 | MS.gene012813:CDS |
| GAGAGATTCGGCCAGAGGGC+TGG | 0.491566 | 3.3:+85878942 | MS.gene012813:CDS |
| TTCATGAAGTACACAAAGAA+TGG | 0.508918 | 3.3:-85878997 | None:intergenic |
| TTCTTTGTGTACTTCATGAA+CGG | 0.513090 | 3.3:+85879000 | MS.gene012813:CDS |
| TGGTGTTGATTGGGAGAACG+AGG | 0.520280 | 3.3:-85877311 | None:intergenic |
| CTGATAACAATCGCGTCTTG+TGG | 0.527046 | 3.3:+85877726 | MS.gene012813:CDS |
| TTCTCTCATTAAGATGATGG+TGG | 0.537417 | 3.3:+85878887 | MS.gene012813:intron |
| TACAACACAAACCAGCCCTC+TGG | 0.539060 | 3.3:-85878953 | None:intergenic |
| ACAAGACATAAGCGAGGAGA+AGG | 0.540303 | 3.3:-85878910 | None:intergenic |
| CGCTCCAAATATACTCACTC+AGG | 0.557163 | 3.3:+85879215 | MS.gene012813:CDS |
| CGAATCACCGGTTCAAAAGG+TGG | 0.570656 | 3.3:+85877210 | MS.gene012813:CDS |
| GTTGAAGAAAGTTCCATCCA+AGG | 0.570827 | 3.3:-85877513 | None:intergenic |
| GGTGTTGATTGGGAGAACGA+GGG | 0.581569 | 3.3:-85877310 | None:intergenic |
| GGAAGAGAAATCATCGCACA+TGG | 0.594853 | 3.3:+85877231 | MS.gene012813:CDS |
| TGGATTATGTAACGAATCAC+CGG | 0.595706 | 3.3:+85877198 | MS.gene012813:CDS |
| TTGTGAGAGATTCGGCCAGA+GGG | 0.595968 | 3.3:+85878938 | MS.gene012813:CDS |
| TTGTCTTAGTTCTCAAGGAG+AGG | 0.597068 | 3.3:+85877631 | MS.gene012813:intron |
| CGGTACATAAATGCTACTGC+CGG | 0.597991 | 3.3:-85879194 | None:intergenic |
| ATTCAGGGTTTAGTTACCTG+TGG | 0.608781 | 3.3:-85879252 | None:intergenic |
| TTAGTTCTCAAGGAGAGGTG+TGG | 0.627309 | 3.3:+85877636 | MS.gene012813:intron |
| TTTGTGAGAGATTCGGCCAG+AGG | 0.628776 | 3.3:+85878937 | MS.gene012813:CDS |
| GAAGAGAAATCATCGCACAT+GGG | 0.643928 | 3.3:+85877232 | MS.gene012813:CDS |
| CTGAGTGAGTATATTTGGAG+CGG | 0.653196 | 3.3:-85879214 | None:intergenic |
| CTACAGTGGAATGATAGGTG+TGG | 0.667383 | 3.3:+85877673 | MS.gene012813:CDS |
| GCTACTGCCGGAATAGCTAG+AGG | 0.675765 | 3.3:-85879182 | None:intergenic |
| AAGAGAAATCATCGCACATG+GGG | 0.694731 | 3.3:+85877233 | MS.gene012813:CDS |
| AATCAAACAAGACATAAGCG+AGG | 0.717182 | 3.3:-85878916 | None:intergenic |
| AGTTGGGTAGTATTCTACAG+TGG | 0.721008 | 3.3:+85877659 | MS.gene012813:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTGAATTTACCTT+TGG | - | chr3.3:85878264-85878283 | None:intergenic | 15.0% |
| !!! | AAAGGTAAATTCAATTTTAT+TGG | + | chr3.3:85878263-85878282 | MS.gene012813:intron | 15.0% |
| !! | AAAGAATATACTTAGATGTA+TGG | - | chr3.3:85878824-85878843 | None:intergenic | 20.0% |
| !! | AAGAATATACTTAGATGTAT+GGG | - | chr3.3:85878823-85878842 | None:intergenic | 20.0% |
| !! | AATAACTTGATGTACAAAAT+AGG | - | chr3.3:85879065-85879084 | None:intergenic | 20.0% |
| !! | ATACATCTAAGTATATTCTT+TGG | + | chr3.3:85878823-85878842 | MS.gene012813:intron | 20.0% |
| !! | TCAAAACAAACATAACTAAA+GGG | + | chr3.3:85878308-85878327 | MS.gene012813:intron | 20.0% |
| !! | TTCAAAACAAACATAACTAA+AGG | + | chr3.3:85878307-85878326 | MS.gene012813:intron | 20.0% |
| !! | TTGATACATTTACATAAAGT+GGG | + | chr3.3:85878161-85878180 | MS.gene012813:intron | 20.0% |
| !! | TTTGATACATTTACATAAAG+TGG | + | chr3.3:85878160-85878179 | MS.gene012813:intron | 20.0% |
| !!! | AAAATTGATTTTGACATGTT+TGG | - | chr3.3:85877996-85878015 | None:intergenic | 20.0% |
| !!! | CTAAATATTATACATTTTCG+TGG | + | chr3.3:85878601-85878620 | MS.gene012813:intron | 20.0% |
| ! | AAAAGTGAGATGAATGTAAA+TGG | + | chr3.3:85877829-85877848 | MS.gene012813:intron | 25.0% |
| ! | AATTGTAATGTAACACTAAC+CGG | - | chr3.3:85877761-85877780 | None:intergenic | 25.0% |
| ! | ACTAATTAAGAATAGAATCG+CGG | - | chr3.3:85877562-85877581 | None:intergenic | 25.0% |
| ! | AGGATAAAAATCATTTGTAG+AGG | + | chr3.3:85878200-85878219 | MS.gene012813:intron | 25.0% |
| ! | CAAAACAAACATAACTAAAG+GGG | + | chr3.3:85878309-85878328 | MS.gene012813:intron | 25.0% |
| ! | GAATGTAAATGGTTTATGTT+TGG | + | chr3.3:85877840-85877859 | MS.gene012813:intron | 25.0% |
| ! | GCAGAATTTATAATGATATC+CGG | + | chr3.3:85879132-85879151 | MS.gene012813:intron | 25.0% |
| ! | TCAAATTGTGTTGAAAGATT+GGG | - | chr3.3:85878353-85878372 | None:intergenic | 25.0% |
| ! | TCAACACAATTTGAATTGTT+TGG | + | chr3.3:85878359-85878378 | MS.gene012813:intron | 25.0% |
| ! | TGCTTCTTCATGATATTTAT+CGG | + | chr3.3:85877409-85877428 | MS.gene012813:intron | 25.0% |
| ! | TTCAAATTGTGTTGAAAGAT+TGG | - | chr3.3:85878354-85878373 | None:intergenic | 25.0% |
| !! | CAAATTAGAATTGATTCCAA+AGG | + | chr3.3:85878245-85878264 | MS.gene012813:intron | 25.0% |
| !!! | AAATTTCCCATTTTTAGTTG+TGG | + | chr3.3:85877469-85877488 | MS.gene012813:CDS | 25.0% |
| !!! | AATTTCCCATTTTTAGTTGT+GGG | + | chr3.3:85877470-85877489 | MS.gene012813:CDS | 25.0% |
| !!! | ATTTTGATTAGATCGGAAAA+CGG | + | chr3.3:85878755-85878774 | MS.gene012813:intron | 25.0% |
| !!! | GGTTTGTATTTTTTGTAGTT+TGG | + | chr3.3:85878380-85878399 | MS.gene012813:intron | 25.0% |
| AAAACACCCACAACTAAAAA+TGG | - | chr3.3:85877479-85877498 | None:intergenic | 30.0% | |
| AAACACCCACAACTAAAAAT+GGG | - | chr3.3:85877478-85877497 | None:intergenic | 30.0% | |
| AATTCTGAGTACAAAGAAGT+AGG | - | chr3.3:85877370-85877389 | None:intergenic | 30.0% | |
| ATGGAACTTTCTTCAACATA+AGG | + | chr3.3:85877519-85877538 | MS.gene012813:CDS | 30.0% | |
| CATAAGTTTGAATCCATGTT+TGG | - | chr3.3:85878046-85878065 | None:intergenic | 30.0% | |
| CCGATCTAATCAAAATCAAT+CGG | - | chr3.3:85878751-85878770 | None:intergenic | 30.0% | |
| CTAATTAAGAATAGAATCGC+GGG | - | chr3.3:85877561-85877580 | None:intergenic | 30.0% | |
| TACATTTACATAAAGTGGGT+TGG | + | chr3.3:85878165-85878184 | MS.gene012813:intron | 30.0% | |
| TTCATGAAGTACACAAAGAA+TGG | - | chr3.3:85879000-85879019 | None:intergenic | 30.0% | |
| TTCTTTGTGTACTTCATGAA+CGG | + | chr3.3:85879000-85879019 | MS.gene012813:CDS | 30.0% | |
| ! | CAAAATCAATCGGTTTAAGT+TGG | - | chr3.3:85878741-85878760 | None:intergenic | 30.0% |
| ! | CTTTTCTCTCATTAAGATGA+TGG | + | chr3.3:85878884-85878903 | MS.gene012813:intron | 30.0% |
| ! | TGTAATTGTCTTAGTTCTCA+AGG | + | chr3.3:85877626-85877645 | MS.gene012813:intron | 30.0% |
| !! | TGATATTTATCGGTTTCAAC+AGG | + | chr3.3:85877419-85877438 | MS.gene012813:intron | 30.0% |
| !! | TGTTTGATTTGTGAGAGATT+CGG | + | chr3.3:85878930-85878949 | MS.gene012813:CDS | 30.0% |
| !! | TGTTTTGAATGAGACATGTT+TGG | - | chr3.3:85878296-85878315 | None:intergenic | 30.0% |
| !! | TTTTGATTAGATCGGAAAAC+GGG | + | chr3.3:85878756-85878775 | MS.gene012813:intron | 30.0% |
| !!! | ATTTTTAGTTGTGGGTGTTT+TGG | + | chr3.3:85877478-85877497 | MS.gene012813:CDS | 30.0% |
| !!! | CCGATTGATTTTGATTAGAT+CGG | + | chr3.3:85878748-85878767 | MS.gene012813:intron | 30.0% |
| !!! | TTTTTAGTTGTGGGTGTTTT+GGG | + | chr3.3:85877479-85877498 | MS.gene012813:CDS | 30.0% |
| AACATAACTAAAGGGGTTCT+CGG | + | chr3.3:85878316-85878335 | MS.gene012813:intron | 35.0% | |
| AATATACTCACTCAGGATAC+TGG | + | chr3.3:85879222-85879241 | MS.gene012813:CDS | 35.0% | |
| AATCAAACAAGACATAAGCG+AGG | - | chr3.3:85878919-85878938 | None:intergenic | 35.0% | |
| AATTATGCATGCTCCAAACA+TGG | + | chr3.3:85878030-85878049 | MS.gene012813:intron | 35.0% | |
| AATTCTGTATGCTAGTTGGT+TGG | + | chr3.3:85879107-85879126 | MS.gene012813:intron | 35.0% | |
| ACCTGAATCAACTCAATGTT+TGG | + | chr3.3:85878688-85878707 | MS.gene012813:intron | 35.0% | |
| CCTGAATCAACTCAATGTTT+GGG | + | chr3.3:85878689-85878708 | MS.gene012813:intron | 35.0% | |
| GATTGTTATCAGGCTTCAAA+TGG | - | chr3.3:85877718-85877737 | None:intergenic | 35.0% | |
| GTATCCTGAGTGAGTATATT+TGG | - | chr3.3:85879222-85879241 | None:intergenic | 35.0% | |
| GTATTCTACAGTGGAATGAT+AGG | + | chr3.3:85877668-85877687 | MS.gene012813:CDS | 35.0% | |
| TACTTAGATGTATGGGTAAG+TGG | - | chr3.3:85878816-85878835 | None:intergenic | 35.0% | |
| TGGATTATGTAACGAATCAC+CGG | + | chr3.3:85877198-85877217 | MS.gene012813:CDS | 35.0% | |
| ! | GCATGCATAATTGATTTCAG+AGG | - | chr3.3:85878022-85878041 | None:intergenic | 35.0% |
| ! | TTCTCTCATTAAGATGATGG+TGG | + | chr3.3:85878887-85878906 | MS.gene012813:intron | 35.0% |
| !! | AAACTTGAAGTGGTTTGGTT+CGG | + | chr3.3:85878429-85878448 | MS.gene012813:intron | 35.0% |
| !! | ATTGAGTTGATTCAGGTGTT+AGG | - | chr3.3:85878685-85878704 | None:intergenic | 35.0% |
| !! | TCAGCAAATTGGTGTTGATT+GGG | - | chr3.3:85877323-85877342 | None:intergenic | 35.0% |
| AAGAGAAATCATCGCACATG+GGG | + | chr3.3:85877233-85877252 | MS.gene012813:CDS | 40.0% | |
| ACATAACTAAAGGGGTTCTC+GGG | + | chr3.3:85878317-85878336 | MS.gene012813:intron | 40.0% | |
| AGTTGGGTAGTATTCTACAG+TGG | + | chr3.3:85877659-85877678 | MS.gene012813:CDS | 40.0% | |
| CAAGCAAACTTGAAGTGGTT+TGG | + | chr3.3:85878424-85878443 | MS.gene012813:intron | 40.0% | |
| CAGGTTTGAATCAATTCTCG+AGG | + | chr3.3:85877945-85877964 | MS.gene012813:intron | 40.0% | |
| CTGAGTGAGTATATTTGGAG+CGG | - | chr3.3:85879217-85879236 | None:intergenic | 40.0% | |
| GAAGAGAAATCATCGCACAT+GGG | + | chr3.3:85877232-85877251 | MS.gene012813:CDS | 40.0% | |
| GACATCACGTTCAATGTGTT+TGG | - | chr3.3:85877449-85877468 | None:intergenic | 40.0% | |
| GCTGAATTCTGTATGCTAGT+TGG | + | chr3.3:85879103-85879122 | MS.gene012813:intron | 40.0% | |
| GTTGAAGAAAGTTCCATCCA+AGG | - | chr3.3:85877516-85877535 | None:intergenic | 40.0% | |
| TAAGAATAGAATCGCGGGAA+TGG | - | chr3.3:85877556-85877575 | None:intergenic | 40.0% | |
| TCTGAGTACAAAGAAGTAGG+TGG | - | chr3.3:85877367-85877386 | None:intergenic | 40.0% | |
| TGATAACAATCGCGTCTTGT+GGG | + | chr3.3:85877727-85877746 | MS.gene012813:CDS | 40.0% | |
| ! | AAGCGACAAATACTAGCTTC+AGG | + | chr3.3:85877926-85877945 | MS.gene012813:intron | 40.0% |
| ! | CAAACCACTTCAAGTTTGCT+TGG | - | chr3.3:85878426-85878445 | None:intergenic | 40.0% |
| ! | CACATTTGGGTTCAAAGTGT+TGG | + | chr3.3:85878555-85878574 | MS.gene012813:intron | 40.0% |
| ! | TTCAAGTTTGCTTGGTTGGT+TGG | - | chr3.3:85878418-85878437 | None:intergenic | 40.0% |
| ! | TTCTCTTCCACCTTTTGAAC+CGG | - | chr3.3:85877220-85877239 | None:intergenic | 40.0% |
| ! | TTGTCTTAGTTCTCAAGGAG+AGG | + | chr3.3:85877631-85877650 | MS.gene012813:intron | 40.0% |
| !! | AATCCAGAAGTGCTCACATT+TGG | + | chr3.3:85878541-85878560 | MS.gene012813:intron | 40.0% |
| !! | ATCCAGAAGTGCTCACATTT+GGG | + | chr3.3:85878542-85878561 | MS.gene012813:intron | 40.0% |
| !! | CCCAAACATTGAGTTGATTC+AGG | - | chr3.3:85878692-85878711 | None:intergenic | 40.0% |
| !! | GTCAGCAAATTGGTGTTGAT+TGG | - | chr3.3:85877324-85877343 | None:intergenic | 40.0% |
| !! | TAACGAATCACCGGTTCAAA+AGG | + | chr3.3:85877207-85877226 | MS.gene012813:CDS | 40.0% |
| !!! | TTTGGGCTTTGTTTTTGCCT+TGG | + | chr3.3:85877496-85877515 | MS.gene012813:CDS | 40.0% |
| AAATCAACCAACCTGACGCA+TGG | + | chr3.3:85878787-85878806 | MS.gene012813:intron | 45.0% | |
| AACCCAAATGTGAGCACTTC+TGG | - | chr3.3:85878547-85878566 | None:intergenic | 45.0% | |
| ACAAGACATAAGCGAGGAGA+AGG | - | chr3.3:85878913-85878932 | None:intergenic | 45.0% | |
| ACTGGAACATCATGCAGAAC+CGG | - | chr3.3:85879154-85879173 | None:intergenic | 45.0% | |
| CACAAGACGCGATTGTTATC+AGG | - | chr3.3:85877728-85877747 | None:intergenic | 45.0% | |
| CATGTTTGGCTGTTCTCAAG+TGG | - | chr3.3:85877982-85878001 | None:intergenic | 45.0% | |
| CCAACCAAGCAAACTTGAAG+TGG | + | chr3.3:85878419-85878438 | MS.gene012813:intron | 45.0% | |
| CGCTCCAAATATACTCACTC+AGG | + | chr3.3:85879215-85879234 | MS.gene012813:CDS | 45.0% | |
| CGGTACATAAATGCTACTGC+CGG | - | chr3.3:85879197-85879216 | None:intergenic | 45.0% | |
| CTACAGTGGAATGATAGGTG+TGG | + | chr3.3:85877673-85877692 | MS.gene012813:CDS | 45.0% | |
| CTGATAACAATCGCGTCTTG+TGG | + | chr3.3:85877726-85877745 | MS.gene012813:CDS | 45.0% | |
| GATTCTGCCTCTAGCTATTC+CGG | + | chr3.3:85879175-85879194 | MS.gene012813:CDS | 45.0% | |
| GGAAGAGAAATCATCGCACA+TGG | + | chr3.3:85877231-85877250 | MS.gene012813:CDS | 45.0% | |
| TAGCTAGAGGCAGAATCAAC+TGG | - | chr3.3:85879172-85879191 | None:intergenic | 45.0% | |
| ! | CCACTTCAAGTTTGCTTGGT+TGG | - | chr3.3:85878422-85878441 | None:intergenic | 45.0% |
| ! | GGAATGATAGGTGTGGCTTT+TGG | + | chr3.3:85877680-85877699 | MS.gene012813:CDS | 45.0% |
| ! | TGGGTTGGACAATAGCTTTG+AGG | + | chr3.3:85878180-85878199 | MS.gene012813:intron | 45.0% |
| ! | TTAGTTCTCAAGGAGAGGTG+TGG | + | chr3.3:85877636-85877655 | MS.gene012813:intron | 45.0% |
| !!! | GGATACTGGTTTTTGTCCAC+AGG | + | chr3.3:85879236-85879255 | MS.gene012813:CDS | 45.0% |
| !!! | GGCTTTGTTTTTGCCTTGGA+TGG | + | chr3.3:85877500-85877519 | MS.gene012813:CDS | 45.0% |
| CGTCTTGTGGGACACTTTAC+CGG | + | chr3.3:85877739-85877758 | MS.gene012813:CDS | 50.0% | |
| GATTGCGCACGTCAGCAAAT+TGG | - | chr3.3:85877334-85877353 | None:intergenic | 50.0% | |
| GTAAGTGGTAACCATGCGTC+AGG | - | chr3.3:85878801-85878820 | None:intergenic | 50.0% | |
| TACAACACAAACCAGCCCTC+TGG | - | chr3.3:85878956-85878975 | None:intergenic | 50.0% | |
| TTGGGAGAACGAGGGATTGT+AGG | - | chr3.3:85877305-85877324 | None:intergenic | 50.0% | |
| TTGTGAGAGATTCGGCCAGA+GGG | + | chr3.3:85878938-85878957 | MS.gene012813:CDS | 50.0% | |
| TTTGTGAGAGATTCGGCCAG+AGG | + | chr3.3:85878937-85878956 | MS.gene012813:CDS | 50.0% | |
| ! | TCAAGGAGAGGTGTGGAGTT+GGG | + | chr3.3:85877643-85877662 | MS.gene012813:CDS | 50.0% |
| !! | CGAATCACCGGTTCAAAAGG+TGG | + | chr3.3:85877210-85877229 | MS.gene012813:CDS | 50.0% |
| !! | GGTGTTGATTGGGAGAACGA+GGG | - | chr3.3:85877313-85877332 | None:intergenic | 50.0% |
| !! | TGGTGTTGATTGGGAGAACG+AGG | - | chr3.3:85877314-85877333 | None:intergenic | 50.0% |
| CTAAAGGGGTTCTCGGGTAC+TGG | + | chr3.3:85878323-85878342 | MS.gene012813:intron | 55.0% | |
| GCTACTGCCGGAATAGCTAG+AGG | - | chr3.3:85879185-85879204 | None:intergenic | 55.0% | |
| GCTGACGTGCGCAATCTTCT+TGG | + | chr3.3:85877338-85877357 | MS.gene012813:CDS | 55.0% | |
| GTGGTAACCATGCGTCAGGT+TGG | - | chr3.3:85878797-85878816 | None:intergenic | 55.0% | |
| ! | CTCAAGGAGAGGTGTGGAGT+TGG | + | chr3.3:85877642-85877661 | MS.gene012813:CDS | 55.0% |
| GAGAGATTCGGCCAGAGGGC+TGG | + | chr3.3:85878942-85878961 | MS.gene012813:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 85877194 | 85879265 | 85877194 | ID=MS.gene012813 |
| chr3.3 | mRNA | 85877194 | 85879265 | 85877194 | ID=MS.gene012813.t1;Parent=MS.gene012813 |
| chr3.3 | exon | 85877194 | 85877359 | 85877194 | ID=MS.gene012813.t1.exon1;Parent=MS.gene012813.t1 |
| chr3.3 | CDS | 85877194 | 85877359 | 85877194 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
| chr3.3 | exon | 85877441 | 85877540 | 85877441 | ID=MS.gene012813.t1.exon2;Parent=MS.gene012813.t1 |
| chr3.3 | CDS | 85877441 | 85877540 | 85877441 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
| chr3.3 | exon | 85877640 | 85877760 | 85877640 | ID=MS.gene012813.t1.exon3;Parent=MS.gene012813.t1 |
| chr3.3 | CDS | 85877640 | 85877760 | 85877640 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
| chr3.3 | exon | 85878900 | 85879021 | 85878900 | ID=MS.gene012813.t1.exon4;Parent=MS.gene012813.t1 |
| chr3.3 | CDS | 85878900 | 85879021 | 85878900 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
| chr3.3 | exon | 85879136 | 85879265 | 85879136 | ID=MS.gene012813.t1.exon5;Parent=MS.gene012813.t1 |
| chr3.3 | CDS | 85879136 | 85879265 | 85879136 | ID=cds.MS.gene012813.t1;Parent=MS.gene012813.t1 |
| Gene Sequence |
| Protein sequence |