Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013017.t1 | TKY75106.1 | 70.5 | 393 | 112 | 3 | 1 | 393 | 1 | 389 | 1.30E-148 | 536.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013017.t1 | Q9S7T8 | 53.6 | 392 | 177 | 4 | 1 | 390 | 1 | 389 | 3.7e-112 | 406.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013017.t1 | A0A2K3MMT8 | 68.9 | 392 | 117 | 1 | 1 | 392 | 1 | 387 | 9.3e-149 | 536.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene013017 | PPI |
| MS.gene065944 | MS.gene013017 | PPI |
| MS.gene006610 | MS.gene013017 | PPI |
| MS.gene045585 | MS.gene013017 | PPI |
| MS.gene031697 | MS.gene013017 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013017.t1 | MTR_3g101190 | 73.028 | 393 | 25 | 3 | 1 | 393 | 1 | 312 | 0.0 | 538 |
| MS.gene013017.t1 | MTR_3g018740 | 67.939 | 393 | 117 | 4 | 1 | 391 | 1 | 386 | 0.0 | 521 |
| MS.gene013017.t1 | MTR_3g101010 | 66.921 | 393 | 126 | 2 | 1 | 393 | 1 | 389 | 0.0 | 519 |
| MS.gene013017.t1 | MTR_7g451890 | 63.171 | 391 | 144 | 0 | 3 | 393 | 12 | 402 | 4.07e-179 | 504 |
| MS.gene013017.t1 | MTR_4g045707 | 63.846 | 390 | 135 | 2 | 4 | 393 | 5 | 388 | 3.10e-178 | 501 |
| MS.gene013017.t1 | MTR_3g101180 | 64.411 | 399 | 135 | 3 | 1 | 392 | 1 | 399 | 8.46e-178 | 501 |
| MS.gene013017.t1 | MTR_8g461160 | 66.667 | 387 | 129 | 0 | 5 | 391 | 6 | 392 | 1.13e-177 | 500 |
| MS.gene013017.t1 | MTR_7g047780 | 63.520 | 392 | 141 | 2 | 3 | 393 | 12 | 402 | 1.14e-176 | 498 |
| MS.gene013017.t1 | MTR_7g050750 | 63.010 | 392 | 143 | 2 | 3 | 393 | 6 | 396 | 2.33e-176 | 497 |
| MS.gene013017.t1 | MTR_8g027395 | 64.194 | 391 | 132 | 3 | 3 | 393 | 15 | 397 | 1.20e-173 | 490 |
| MS.gene013017.t1 | MTR_7g050810 | 63.171 | 391 | 144 | 0 | 3 | 393 | 14 | 404 | 2.54e-173 | 489 |
| MS.gene013017.t1 | MTR_3g101130 | 62.944 | 394 | 140 | 3 | 1 | 393 | 1 | 389 | 1.82e-169 | 479 |
| MS.gene013017.t1 | MTR_3g101030 | 59.453 | 402 | 143 | 4 | 8 | 393 | 32 | 429 | 1.50e-164 | 468 |
| MS.gene013017.t1 | MTR_3g048000 | 61.598 | 388 | 124 | 5 | 6 | 392 | 28 | 391 | 1.32e-163 | 464 |
| MS.gene013017.t1 | MTR_2g046030 | 59.747 | 395 | 146 | 5 | 1 | 391 | 1 | 386 | 3.65e-160 | 455 |
| MS.gene013017.t1 | MTR_8g027420 | 61.480 | 392 | 130 | 5 | 3 | 393 | 4 | 375 | 2.83e-159 | 452 |
| MS.gene013017.t1 | MTR_4g088525 | 63.260 | 362 | 127 | 1 | 29 | 390 | 11 | 366 | 3.04e-158 | 450 |
| MS.gene013017.t1 | MTR_2g045980 | 59.494 | 395 | 147 | 5 | 1 | 391 | 1 | 386 | 4.71e-158 | 450 |
| MS.gene013017.t1 | MTR_3g015620 | 61.183 | 389 | 123 | 5 | 5 | 391 | 16 | 378 | 1.87e-154 | 441 |
| MS.gene013017.t1 | MTR_3g101050 | 60.363 | 386 | 130 | 6 | 8 | 391 | 32 | 396 | 8.17e-149 | 427 |
| MS.gene013017.t1 | MTR_4g088535 | 59.536 | 388 | 133 | 5 | 5 | 392 | 7 | 370 | 1.78e-148 | 426 |
| MS.gene013017.t1 | MTR_3g102920 | 56.250 | 384 | 124 | 6 | 13 | 392 | 66 | 409 | 1.13e-140 | 407 |
| MS.gene013017.t1 | MTR_3g101200 | 53.708 | 391 | 152 | 5 | 3 | 392 | 29 | 391 | 4.73e-126 | 369 |
| MS.gene013017.t1 | MTR_7g050830 | 56.962 | 316 | 105 | 2 | 3 | 298 | 14 | 318 | 9.62e-120 | 350 |
| MS.gene013017.t1 | MTR_3g100995 | 62.548 | 259 | 92 | 2 | 135 | 393 | 11 | 264 | 2.00e-111 | 327 |
| MS.gene013017.t1 | MTR_3g100010 | 53.605 | 319 | 100 | 2 | 27 | 312 | 37 | 340 | 1.04e-108 | 323 |
| MS.gene013017.t1 | MTR_3g018747 | 62.069 | 261 | 81 | 4 | 131 | 390 | 9 | 252 | 7.95e-104 | 307 |
| MS.gene013017.t1 | MTR_3g015760 | 58.333 | 276 | 103 | 4 | 120 | 391 | 12 | 279 | 4.73e-103 | 306 |
| MS.gene013017.t1 | MTR_3g114310 | 41.294 | 402 | 211 | 13 | 6 | 393 | 20 | 410 | 3.93e-85 | 265 |
| MS.gene013017.t1 | MTR_3g100520 | 60.268 | 224 | 72 | 3 | 172 | 393 | 1 | 209 | 4.45e-83 | 253 |
| MS.gene013017.t1 | MTR_3g111160 | 62.264 | 212 | 75 | 3 | 183 | 393 | 13 | 220 | 6.47e-82 | 250 |
| MS.gene013017.t1 | MTR_3g101110 | 57.627 | 236 | 72 | 3 | 134 | 367 | 71 | 280 | 3.25e-78 | 243 |
| MS.gene013017.t1 | MTR_2g046410 | 59.024 | 205 | 76 | 3 | 191 | 391 | 147 | 347 | 1.64e-76 | 241 |
| MS.gene013017.t1 | MTR_3g099970 | 61.735 | 196 | 58 | 2 | 131 | 326 | 20 | 198 | 3.23e-76 | 234 |
| MS.gene013017.t1 | MTR_3g101150 | 67.089 | 158 | 50 | 1 | 237 | 392 | 1 | 158 | 2.25e-66 | 208 |
| MS.gene013017.t1 | MTR_3g101020 | 53.968 | 189 | 58 | 2 | 205 | 393 | 1 | 160 | 6.64e-59 | 189 |
| MS.gene013017.t1 | MTR_3g111150 | 58.046 | 174 | 47 | 3 | 10 | 183 | 4 | 151 | 1.19e-58 | 188 |
| MS.gene013017.t1 | MTR_3g102870 | 57.764 | 161 | 67 | 1 | 194 | 353 | 1 | 161 | 1.44e-54 | 178 |
| MS.gene013017.t1 | MTR_3g100990 | 64.885 | 131 | 44 | 1 | 1 | 131 | 1 | 129 | 3.01e-47 | 168 |
| MS.gene013017.t1 | MTR_4g093550 | 58.140 | 86 | 34 | 1 | 5 | 90 | 6 | 89 | 5.35e-22 | 89.7 |
| MS.gene013017.t1 | MTR_3g101140 | 60.000 | 70 | 27 | 1 | 324 | 393 | 48 | 116 | 1.12e-19 | 84.3 |
| MS.gene013017.t1 | MTR_6g046890 | 66.667 | 60 | 20 | 0 | 29 | 88 | 21 | 80 | 2.79e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013017.t1 | AT1G47710 | 53.435 | 393 | 178 | 4 | 1 | 391 | 1 | 390 | 3.57e-144 | 415 |
| MS.gene013017.t1 | AT1G47710 | 53.435 | 393 | 178 | 4 | 1 | 391 | 28 | 417 | 5.40e-143 | 413 |
| MS.gene013017.t1 | AT3G45220 | 45.050 | 404 | 194 | 6 | 1 | 390 | 1 | 390 | 1.12e-116 | 345 |
| MS.gene013017.t1 | AT2G25240 | 48.223 | 394 | 188 | 8 | 1 | 390 | 1 | 382 | 1.29e-116 | 345 |
| MS.gene013017.t1 | AT2G26390 | 46.231 | 398 | 194 | 8 | 1 | 390 | 1 | 386 | 5.10e-114 | 338 |
| MS.gene013017.t1 | AT1G64030 | 41.624 | 394 | 203 | 6 | 1 | 390 | 1 | 371 | 4.75e-101 | 305 |
| MS.gene013017.t1 | AT1G62170 | 40.302 | 397 | 203 | 7 | 1 | 390 | 62 | 431 | 1.02e-99 | 303 |
| MS.gene013017.t1 | AT2G35580 | 43.467 | 398 | 176 | 11 | 1 | 390 | 15 | 371 | 1.78e-98 | 298 |
| MS.gene013017.t1 | AT2G14540 | 40.458 | 393 | 207 | 6 | 1 | 390 | 29 | 397 | 5.74e-97 | 295 |
| MS.gene013017.t1 | AT1G62170 | 37.209 | 430 | 203 | 8 | 1 | 390 | 62 | 464 | 1.87e-92 | 286 |
| MS.gene013017.t1 | AT1G64010 | 46.818 | 220 | 91 | 5 | 172 | 390 | 1 | 195 | 6.79e-63 | 201 |
| MS.gene013017.t1 | AT1G64010 | 46.078 | 204 | 84 | 5 | 188 | 390 | 3 | 181 | 4.05e-55 | 180 |
| MS.gene013017.t1 | AT1G62160 | 43.169 | 183 | 75 | 5 | 211 | 390 | 62 | 218 | 7.66e-35 | 128 |
| MS.gene013017.t1 | AT1G63280 | 50.000 | 118 | 55 | 2 | 128 | 243 | 5 | 120 | 5.63e-32 | 117 |
| MS.gene013017.t1 | AT1G51330 | 49.541 | 109 | 52 | 3 | 132 | 237 | 32 | 140 | 7.52e-26 | 103 |
| MS.gene013017.t1 | AT1G64020 | 32.787 | 122 | 79 | 3 | 1 | 121 | 1 | 120 | 6.00e-15 | 71.2 |
Find 73 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGAACTATACTCTTTAT+TGG | 0.166831 | 3.3:-83846545 | MS.gene013017:CDS |
| GAAATGATGGTGGGGTGTTC+AGG | 0.220765 | 3.3:-83846641 | MS.gene013017:CDS |
| GTTCTCCAAACAAGAATTTC+AGG | 0.221673 | 3.3:-83848188 | MS.gene013017:CDS |
| AGTCCATAAATTCACTTCTT+TGG | 0.232769 | 3.3:+83847270 | None:intergenic |
| TGGCCAAAGAAGTGAATTTA+TGG | 0.253715 | 3.3:-83847273 | MS.gene013017:CDS |
| AATTGTGGCTACTGATTATA+AGG | 0.260864 | 3.3:-83847912 | MS.gene013017:CDS |
| GGCTTCTGAATCAGAGTTCT+TGG | 0.266325 | 3.3:-83846912 | MS.gene013017:CDS |
| ATGATCAAAGAAGATTCTTC+TGG | 0.286141 | 3.3:-83846563 | MS.gene013017:CDS |
| CTTGTCCTGAAATTCTTGTT+TGG | 0.301922 | 3.3:+83848183 | None:intergenic |
| TCAGCTACAAAGTCTATTTC+AGG | 0.302912 | 3.3:+83846602 | None:intergenic |
| ATTAAGATGATCCGTGGATT+TGG | 0.324605 | 3.3:+83848060 | None:intergenic |
| CCTTGCCTCTCTTTCGTCAA+TGG | 0.325177 | 3.3:-83847980 | MS.gene013017:CDS |
| GGATGAAAAGTTCAATACTA+TGG | 0.335215 | 3.3:-83847143 | MS.gene013017:CDS |
| CTCATCTTTGATTGAGAAAG+TGG | 0.343131 | 3.3:-83846933 | MS.gene013017:CDS |
| TTCAGTTGATTTCAAAACTA+AGG | 0.359442 | 3.3:-83847879 | MS.gene013017:intron |
| AAGTGAAAGTAAACGACTTC+AGG | 0.375260 | 3.3:-83846868 | MS.gene013017:CDS |
| AGAAACAAGTTGAGAGGATA+AGG | 0.393608 | 3.3:+83848036 | None:intergenic |
| TCTGATGCTGCTCCCCTTGG+CGG | 0.402450 | 3.3:-83848004 | MS.gene013017:CDS |
| CAAAGGAAGGTTGAAGAGGA+AGG | 0.407458 | 3.3:+83847939 | None:intergenic |
| TTCTCTGATGCTGCTCCCCT+TGG | 0.414206 | 3.3:-83848007 | MS.gene013017:CDS |
| AGCACATGATGCAGCAGCTT+CGG | 0.414718 | 3.3:+83846667 | None:intergenic |
| AAATGATGGTGGGGTGTTCA+GGG | 0.419727 | 3.3:-83846640 | MS.gene013017:CDS |
| ATCATTCGTGCTGGTTATGA+AGG | 0.424779 | 3.3:+83847069 | None:intergenic |
| TACTGATTATAAGGCCACTT+TGG | 0.440391 | 3.3:-83847903 | MS.gene013017:CDS |
| TTTCTTCCAGATACAAAAGA+TGG | 0.444491 | 3.3:-83846959 | MS.gene013017:CDS |
| CTGATGCTGCTCCCCTTGGC+GGG | 0.446804 | 3.3:-83848003 | MS.gene013017:CDS |
| GTCAAACCACCAGGATAGAA+AGG | 0.456529 | 3.3:+83846776 | None:intergenic |
| TTCATTGAAGTAAAAGAAGA+AGG | 0.457204 | 3.3:-83846692 | MS.gene013017:CDS |
| GCAAATGCATTGTACTTCAA+AGG | 0.467497 | 3.3:-83847172 | MS.gene013017:CDS |
| GTTGATCTACCTTTCTATCC+TGG | 0.472853 | 3.3:-83846785 | MS.gene013017:CDS |
| CTTTGCCTTCCTTATAAACA+AGG | 0.477658 | 3.3:-83847013 | MS.gene013017:CDS |
| TCAAATGTGCTCAAGGAACT+AGG | 0.489223 | 3.3:-83846809 | MS.gene013017:CDS |
| TGATGTTGAGCACAACTTGA+AGG | 0.493358 | 3.3:+83848137 | None:intergenic |
| AAGAGAGGCAAGGCCCGCCA+AGG | 0.494015 | 3.3:+83847990 | None:intergenic |
| AAAGGAAGGTTGAAGAGGAA+GGG | 0.495469 | 3.3:+83847940 | None:intergenic |
| TCACCTTCTCAATGGCAGCT+TGG | 0.504050 | 3.3:-83847101 | MS.gene013017:CDS |
| TCTCTTTCGTCAATGGTGCA+TGG | 0.506157 | 3.3:-83847973 | MS.gene013017:CDS |
| ATGTATGATCACCCAACAAA+AGG | 0.506228 | 3.3:+83846509 | None:intergenic |
| TCTCAATGGCAGCTTGGTCA+AGG | 0.524451 | 3.3:-83847095 | MS.gene013017:CDS |
| ATCATAGCTGCTGGCTCCGA+CGG | 0.531432 | 3.3:-83848118 | MS.gene013017:CDS |
| GTGCTCAACATCATAGCTGC+TGG | 0.532004 | 3.3:-83848127 | MS.gene013017:CDS |
| GATGTTGAGCACAACTTGAA+GGG | 0.546596 | 3.3:+83848138 | None:intergenic |
| TGAAACTTCAAATGTGCTCA+AGG | 0.549268 | 3.3:-83846816 | MS.gene013017:CDS |
| AGAGAGGCAAGGCCCGCCAA+GGG | 0.554030 | 3.3:+83847991 | None:intergenic |
| ATCATGTGCTTTAGAAATGA+TGG | 0.556106 | 3.3:-83846654 | MS.gene013017:CDS |
| GAAATCAACTGAAGCCAAAG+TGG | 0.562346 | 3.3:+83847889 | None:intergenic |
| TGATCATAAACATGAAAGGA+TGG | 0.563748 | 3.3:+83846579 | None:intergenic |
| CATTGTACTTCAAAGGAGCA+TGG | 0.565962 | 3.3:-83847165 | MS.gene013017:CDS |
| ATTAAAACAATTCTTCCACC+CGG | 0.573606 | 3.3:-83847226 | MS.gene013017:CDS |
| GAGCACAACTTGAAGGGACA+AGG | 0.579072 | 3.3:+83848144 | None:intergenic |
| GATCTACCTTTCTATCCTGG+TGG | 0.579838 | 3.3:-83846782 | MS.gene013017:CDS |
| TCTTTGATCATAAACATGAA+AGG | 0.580563 | 3.3:+83846575 | None:intergenic |
| GATAAACTGATCATTCGTGC+TGG | 0.581522 | 3.3:+83847060 | None:intergenic |
| GATGATCCGTGGATTTGGAT+CGG | 0.583074 | 3.3:+83848065 | None:intergenic |
| AGTTGAGTCATCTATCGACC+CGG | 0.598161 | 3.3:+83847207 | None:intergenic |
| TGACCAAGCTGCCATTGAGA+AGG | 0.601435 | 3.3:+83847098 | None:intergenic |
| ATTGTACTTCAAAGGAGCAT+GGG | 0.603172 | 3.3:-83847164 | MS.gene013017:CDS |
| CACAGAAGAAACAAGTTGAG+AGG | 0.605430 | 3.3:+83848030 | None:intergenic |
| TCATTCGTGCTGGTTATGAA+GGG | 0.623826 | 3.3:+83847070 | None:intergenic |
| TAAGGAATTAAGATGATCCG+TGG | 0.630614 | 3.3:+83848054 | None:intergenic |
| GCTACAAAGTCTATTTCAGG+TGG | 0.631861 | 3.3:+83846605 | None:intergenic |
| ATGCACCATTGACGAAAGAG+AGG | 0.636350 | 3.3:+83847975 | None:intergenic |
| GAGAGGCAAGGCCCGCCAAG+GGG | 0.636835 | 3.3:+83847992 | None:intergenic |
| TTAAAACAATTCTTCCACCC+GGG | 0.646309 | 3.3:-83847225 | MS.gene013017:CDS |
| TTTCCTCCGATCCAAATCCA+CGG | 0.646951 | 3.3:-83848071 | MS.gene013017:CDS |
| TGTGCTTTAGAAATGATGGT+GGG | 0.662254 | 3.3:-83846650 | MS.gene013017:CDS |
| GTTGAGTCATCTATCGACCC+GGG | 0.669094 | 3.3:+83847208 | None:intergenic |
| AGCACAACTTGAAGGGACAA+GGG | 0.672805 | 3.3:+83848145 | None:intergenic |
| GATCCGTGGATTTGGATCGG+AGG | 0.683754 | 3.3:+83848068 | None:intergenic |
| ATGTGCTTTAGAAATGATGG+TGG | 0.710043 | 3.3:-83846651 | MS.gene013017:CDS |
| GTGCTTTAGAAATGATGGTG+GGG | 0.715918 | 3.3:-83846649 | MS.gene013017:CDS |
| CCATTGACGAAAGAGAGGCA+AGG | 0.723051 | 3.3:+83847980 | None:intergenic |
| GAGTCATCTATCGACCCGGG+TGG | 0.731376 | 3.3:+83847211 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAATTATTATTTTAT+TGG | + | chr3.3:83846953-83846972 | None:intergenic | 0.0% |
| !!! | ATTTTTCTTACTTTTTTTAA+CGG | + | chr3.3:83847047-83847066 | None:intergenic | 10.0% |
| !!! | CTTATATTTGATATTTTTAA+AGG | - | chr3.3:83847462-83847481 | MS.gene013017:intron | 10.0% |
| !! | AAAAAGTAAGAAAAATTCTT+TGG | - | chr3.3:83847051-83847070 | MS.gene013017:CDS | 15.0% |
| !!! | GAAATATTTTAGAAACATAA+AGG | + | chr3.3:83848047-83848066 | None:intergenic | 15.0% |
| !!! | ACAAATATTTTGTGATTTTG+AGG | + | chr3.3:83846561-83846580 | None:intergenic | 20.0% |
| !!! | CAAATATTTTGTGATTTTGA+GGG | + | chr3.3:83846560-83846579 | None:intergenic | 20.0% |
| !!! | TCAAATGATATTTTGAATCT+TGG | + | chr3.3:83847928-83847947 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | + | chr3.3:83847766-83847785 | None:intergenic | 20.0% |
| !!! | TTTACTTTCACTTTTTTGTT+AGG | + | chr3.3:83847892-83847911 | None:intergenic | 20.0% |
| ! | TCTTTGATCATAAACATGAA+AGG | + | chr3.3:83848195-83848214 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAAAGAAGA+AGG | - | chr3.3:83848075-83848094 | MS.gene013017:CDS | 25.0% |
| !! | TATTTTATTGGAAATAGACC+AGG | + | chr3.3:83846941-83846960 | None:intergenic | 25.0% |
| !! | TTCAGTTGATTTCAAAACTA+AGG | - | chr3.3:83846888-83846907 | MS.gene013017:CDS | 25.0% |
| !!! | TCAATCATTTTTTGACATCA+AGG | + | chr3.3:83847002-83847021 | None:intergenic | 25.0% |
| AGTCCATAAATTCACTTCTT+TGG | + | chr3.3:83847500-83847519 | None:intergenic | 30.0% | |
| ATGATCAAAGAAGATTCTTC+TGG | - | chr3.3:83848204-83848223 | MS.gene013017:CDS | 30.0% | |
| ATTAAAACAATTCTTCCACC+CGG | - | chr3.3:83847541-83847560 | MS.gene013017:intron | 30.0% | |
| ATTATACCTGATAACAGAGA+AGG | + | chr3.3:83847348-83847367 | None:intergenic | 30.0% | |
| GGATGAAAAGTTCAATACTA+TGG | - | chr3.3:83847624-83847643 | MS.gene013017:intron | 30.0% | |
| GTATTCAACAAATTGATGAG+CGG | - | chr3.3:83847391-83847410 | MS.gene013017:intron | 30.0% | |
| TGATCATAAACATGAAAGGA+TGG | + | chr3.3:83848191-83848210 | None:intergenic | 30.0% | |
| TTTCTTCCAGATACAAAAGA+TGG | - | chr3.3:83847808-83847827 | MS.gene013017:intron | 30.0% | |
| ! | AATTGTGGCTACTGATTATA+AGG | - | chr3.3:83846855-83846874 | MS.gene013017:CDS | 30.0% |
| ! | ACCTTCCTTTGAAAAAATTG+TGG | - | chr3.3:83846840-83846859 | MS.gene013017:CDS | 30.0% |
| ! | TATGATTTTCACCTTCTCAA+TGG | - | chr3.3:83847658-83847677 | MS.gene013017:intron | 30.0% |
| ! | TCTGGAACTATACTCTTTAT+TGG | - | chr3.3:83848222-83848241 | MS.gene013017:CDS | 30.0% |
| ! | TGATGTTTTGCCAAAATAGA+TGG | - | chr3.3:83847294-83847313 | MS.gene013017:intron | 30.0% |
| ! | TTCTAACTTTGAAGAACCAA+AGG | + | chr3.3:83847173-83847192 | None:intergenic | 30.0% |
| ! | TTTTGTATCTGGAAGAAAGA+AGG | + | chr3.3:83847806-83847825 | None:intergenic | 30.0% |
| !! | ATCATGTGCTTTAGAAATGA+TGG | - | chr3.3:83848113-83848132 | MS.gene013017:CDS | 30.0% |
| !! | ATTTTTAAAGGCAAGTGAAG+TGG | - | chr3.3:83847474-83847493 | MS.gene013017:intron | 30.0% |
| !! | CAGTTTATCAGTGTTTTTGA+TGG | - | chr3.3:83847721-83847740 | MS.gene013017:intron | 30.0% |
| !! | CTTTTCCTTGTTTATAAGGA+AGG | + | chr3.3:83847762-83847781 | None:intergenic | 30.0% |
| !!! | AGTAGCCACAATTTTTTCAA+AGG | + | chr3.3:83846848-83846867 | None:intergenic | 30.0% |
| AAGTGAAAGTAAACGACTTC+AGG | - | chr3.3:83847899-83847918 | MS.gene013017:CDS | 35.0% | |
| ATTAAGATGATCCGTGGATT+TGG | + | chr3.3:83846710-83846729 | None:intergenic | 35.0% | |
| CTCATCTTTGATTGAGAAAG+TGG | - | chr3.3:83847834-83847853 | MS.gene013017:intron | 35.0% | |
| CTTGTCCTGAAATTCTTGTT+TGG | + | chr3.3:83846587-83846606 | None:intergenic | 35.0% | |
| CTTTGCCTTCCTTATAAACA+AGG | - | chr3.3:83847754-83847773 | MS.gene013017:intron | 35.0% | |
| GCAAATGCATTGTACTTCAA+AGG | - | chr3.3:83847595-83847614 | MS.gene013017:intron | 35.0% | |
| GTTCTCCAAACAAGAATTTC+AGG | - | chr3.3:83846579-83846598 | MS.gene013017:CDS | 35.0% | |
| TAAGGAATTAAGATGATCCG+TGG | + | chr3.3:83846716-83846735 | None:intergenic | 35.0% | |
| TATTGGAAATAGACCAGGAT+TGG | + | chr3.3:83846936-83846955 | None:intergenic | 35.0% | |
| TCAGCTACAAAGTCTATTTC+AGG | + | chr3.3:83848168-83848187 | None:intergenic | 35.0% | |
| TGAAACTTCAAATGTGCTCA+AGG | - | chr3.3:83847951-83847970 | MS.gene013017:CDS | 35.0% | |
| TGGACTGAAAAAGAGACAAA+TGG | - | chr3.3:83847514-83847533 | MS.gene013017:intron | 35.0% | |
| TGGCCAAAGAAGTGAATTTA+TGG | - | chr3.3:83847494-83847513 | MS.gene013017:intron | 35.0% | |
| TGTGTTATCGAGCAAAAAAG+AGG | - | chr3.3:83847098-83847117 | MS.gene013017:CDS | 35.0% | |
| TTAAAACAATTCTTCCACCC+GGG | - | chr3.3:83847542-83847561 | MS.gene013017:intron | 35.0% | |
| ! | AAGTGCTCAATCCTTTTGTT+GGG | - | chr3.3:83848247-83848266 | MS.gene013017:CDS | 35.0% |
| ! | AGAAACAAGTTGAGAGGATA+AGG | + | chr3.3:83846734-83846753 | None:intergenic | 35.0% |
| ! | ATTGTACTTCAAAGGAGCAT+GGG | - | chr3.3:83847603-83847622 | MS.gene013017:intron | 35.0% |
| ! | GCAAGACATACCATCTATTT+TGG | + | chr3.3:83847307-83847326 | None:intergenic | 35.0% |
| ! | TACTGATTATAAGGCCACTT+TGG | - | chr3.3:83846864-83846883 | MS.gene013017:CDS | 35.0% |
| ! | TTTTCAAAGGAAGGTTGAAG+AGG | + | chr3.3:83846835-83846854 | None:intergenic | 35.0% |
| !! | AATAGACCAGGATTGGTTTA+TGG | + | chr3.3:83846929-83846948 | None:intergenic | 35.0% |
| !! | ATAGACCAGGATTGGTTTAT+GGG | + | chr3.3:83846928-83846947 | None:intergenic | 35.0% |
| !! | ATGTGCTTTAGAAATGATGG+TGG | - | chr3.3:83848116-83848135 | MS.gene013017:CDS | 35.0% |
| !! | TGTGCTTTAGAAATGATGGT+GGG | - | chr3.3:83848117-83848136 | MS.gene013017:CDS | 35.0% |
| !!! | GACAGAAGTTGTTGTTTTGT+AGG | + | chr3.3:83846676-83846695 | None:intergenic | 35.0% |
| !!! | GCCACAATTTTTTCAAAGGA+AGG | + | chr3.3:83846844-83846863 | None:intergenic | 35.0% |
| AAAGGAAGGTTGAAGAGGAA+GGG | + | chr3.3:83846830-83846849 | None:intergenic | 40.0% | |
| ACCTGATAACAGAGAAGGTA+AGG | + | chr3.3:83847343-83847362 | None:intergenic | 40.0% | |
| ACCTTACCTTCTCTGTTATC+AGG | - | chr3.3:83847339-83847358 | MS.gene013017:intron | 40.0% | |
| CATTGTACTTCAAAGGAGCA+TGG | - | chr3.3:83847602-83847621 | MS.gene013017:intron | 40.0% | |
| GAAATCAACTGAAGCCAAAG+TGG | + | chr3.3:83846881-83846900 | None:intergenic | 40.0% | |
| GATAAACTGATCATTCGTGC+TGG | + | chr3.3:83847710-83847729 | None:intergenic | 40.0% | |
| GATGTTGAGCACAACTTGAA+GGG | + | chr3.3:83846632-83846651 | None:intergenic | 40.0% | |
| GCTACAAAGTCTATTTCAGG+TGG | + | chr3.3:83848165-83848184 | None:intergenic | 40.0% | |
| GTTGATCTACCTTTCTATCC+TGG | - | chr3.3:83847982-83848001 | MS.gene013017:CDS | 40.0% | |
| TCAAATGTGCTCAAGGAACT+AGG | - | chr3.3:83847958-83847977 | MS.gene013017:CDS | 40.0% | |
| TCCTGGTGGTTTGACAAAAA+TGG | - | chr3.3:83847999-83848018 | MS.gene013017:CDS | 40.0% | |
| TGATGTTGAGCACAACTTGA+AGG | + | chr3.3:83846633-83846652 | None:intergenic | 40.0% | |
| ! | CAAGTGCTCAATCCTTTTGT+TGG | - | chr3.3:83848246-83848265 | MS.gene013017:CDS | 40.0% |
| ! | CACAGAAGAAACAAGTTGAG+AGG | + | chr3.3:83846740-83846759 | None:intergenic | 40.0% |
| ! | CTTTTCCCATAAACCAATCC+TGG | - | chr3.3:83846920-83846939 | MS.gene013017:CDS | 40.0% |
| ! | GAGAGTCCATCTTTTGTATC+TGG | + | chr3.3:83847817-83847836 | None:intergenic | 40.0% |
| !! | ACCATTTTTGTCAAACCACC+AGG | + | chr3.3:83848003-83848022 | None:intergenic | 40.0% |
| !! | ATCATTCGTGCTGGTTATGA+AGG | + | chr3.3:83847701-83847720 | None:intergenic | 40.0% |
| !! | GTGCTTTAGAAATGATGGTG+GGG | - | chr3.3:83848118-83848137 | MS.gene013017:CDS | 40.0% |
| !! | TCATTCGTGCTGGTTATGAA+GGG | + | chr3.3:83847700-83847719 | None:intergenic | 40.0% |
| !!! | TTGTTGTTTTGTAGGACCGT+CGG | + | chr3.3:83846668-83846687 | None:intergenic | 40.0% |
| AGCACAACTTGAAGGGACAA+GGG | + | chr3.3:83846625-83846644 | None:intergenic | 45.0% | |
| AGTTGAGTCATCTATCGACC+CGG | + | chr3.3:83847563-83847582 | None:intergenic | 45.0% | |
| ATGCACCATTGACGAAAGAG+AGG | + | chr3.3:83846795-83846814 | None:intergenic | 45.0% | |
| CAAAGGAAGGTTGAAGAGGA+AGG | + | chr3.3:83846831-83846850 | None:intergenic | 45.0% | |
| GAAGAACCAAAGGTTCTGTG+CGG | + | chr3.3:83847163-83847182 | None:intergenic | 45.0% | |
| GATCTACCTTTCTATCCTGG+TGG | - | chr3.3:83847985-83848004 | MS.gene013017:CDS | 45.0% | |
| GATGATCCGTGGATTTGGAT+CGG | + | chr3.3:83846705-83846724 | None:intergenic | 45.0% | |
| GGCTTCTGAATCAGAGTTCT+TGG | - | chr3.3:83847855-83847874 | MS.gene013017:intron | 45.0% | |
| GTCAAACCACCAGGATAGAA+AGG | + | chr3.3:83847994-83848013 | None:intergenic | 45.0% | |
| TCTCTTTCGTCAATGGTGCA+TGG | - | chr3.3:83846794-83846813 | MS.gene013017:CDS | 45.0% | |
| TTTCCTCCGATCCAAATCCA+CGG | - | chr3.3:83846696-83846715 | MS.gene013017:CDS | 45.0% | |
| !! | AAATGATGGTGGGGTGTTCA+GGG | - | chr3.3:83848127-83848146 | MS.gene013017:CDS | 45.0% |
| AGCACATGATGCAGCAGCTT+CGG | + | chr3.3:83848103-83848122 | None:intergenic | 50.0% | |
| CCATTGACGAAAGAGAGGCA+AGG | + | chr3.3:83846790-83846809 | None:intergenic | 50.0% | |
| CCTTGCCTCTCTTTCGTCAA+TGG | - | chr3.3:83846787-83846806 | MS.gene013017:CDS | 50.0% | |
| GAGCACAACTTGAAGGGACA+AGG | + | chr3.3:83846626-83846645 | None:intergenic | 50.0% | |
| GTGCTCAACATCATAGCTGC+TGG | - | chr3.3:83846640-83846659 | MS.gene013017:CDS | 50.0% | |
| GTTGAGTCATCTATCGACCC+GGG | + | chr3.3:83847562-83847581 | None:intergenic | 50.0% | |
| TCACCTTCTCAATGGCAGCT+TGG | - | chr3.3:83847666-83847685 | MS.gene013017:intron | 50.0% | |
| TCTCAATGGCAGCTTGGTCA+AGG | - | chr3.3:83847672-83847691 | MS.gene013017:intron | 50.0% | |
| TGACCAAGCTGCCATTGAGA+AGG | + | chr3.3:83847672-83847691 | None:intergenic | 50.0% | |
| !! | GAAATGATGGTGGGGTGTTC+AGG | - | chr3.3:83848126-83848145 | MS.gene013017:CDS | 50.0% |
| AACCAAAGGTTCTGTGCGGC+AGG | + | chr3.3:83847159-83847178 | None:intergenic | 55.0% | |
| GATCCGTGGATTTGGATCGG+AGG | + | chr3.3:83846702-83846721 | None:intergenic | 55.0% | |
| TTCCTGCCGCACAGAACCTT+TGG | - | chr3.3:83847154-83847173 | MS.gene013017:CDS | 55.0% | |
| TTCTCTGATGCTGCTCCCCT+TGG | - | chr3.3:83846760-83846779 | MS.gene013017:CDS | 55.0% | |
| !! | ATCATAGCTGCTGGCTCCGA+CGG | - | chr3.3:83846649-83846668 | MS.gene013017:CDS | 55.0% |
| GAGTCATCTATCGACCCGGG+TGG | + | chr3.3:83847559-83847578 | None:intergenic | 60.0% | |
| TCTGATGCTGCTCCCCTTGG+CGG | - | chr3.3:83846763-83846782 | MS.gene013017:CDS | 60.0% | |
| AAGAGAGGCAAGGCCCGCCA+AGG | + | chr3.3:83846780-83846799 | None:intergenic | 65.0% | |
| AGAGAGGCAAGGCCCGCCAA+GGG | + | chr3.3:83846779-83846798 | None:intergenic | 65.0% | |
| CTGATGCTGCTCCCCTTGGC+GGG | - | chr3.3:83846764-83846783 | MS.gene013017:CDS | 65.0% | |
| GAGAGGCAAGGCCCGCCAAG+GGG | + | chr3.3:83846778-83846797 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83846517 | 83848272 | 83846517 | ID=MS.gene013017 |
| chr3.3 | mRNA | 83846517 | 83848272 | 83846517 | ID=MS.gene013017.t1;Parent=MS.gene013017 |
| chr3.3 | exon | 83847880 | 83848272 | 83847880 | ID=MS.gene013017.t1.exon1;Parent=MS.gene013017.t1 |
| chr3.3 | CDS | 83847880 | 83848272 | 83847880 | ID=cds.MS.gene013017.t1;Parent=MS.gene013017.t1 |
| chr3.3 | exon | 83846517 | 83847305 | 83846517 | ID=MS.gene013017.t1.exon2;Parent=MS.gene013017.t1 |
| chr3.3 | CDS | 83846517 | 83847305 | 83846517 | ID=cds.MS.gene013017.t1;Parent=MS.gene013017.t1 |
| Gene Sequence |
| Protein sequence |
