Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013018.t1 | XP_003602989.1 | 92.5 | 400 | 30 | 0 | 1 | 400 | 1 | 400 | 1.20E-207 | 732.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013018.t1 | Q9S7T8 | 52.7 | 395 | 176 | 5 | 6 | 398 | 5 | 390 | 6.9e-106 | 385.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013018.t1 | G7J5S4 | 92.5 | 400 | 30 | 0 | 1 | 400 | 1 | 400 | 9.0e-208 | 732.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene013018 | PPI |
| MS.gene065945 | MS.gene013018 | PPI |
| MS.gene031697 | MS.gene013018 | PPI |
| MS.gene013018 | MS.gene045585 | PPI |
| MS.gene013018 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013018.t1 | MTR_3g101180 | 92.500 | 400 | 30 | 0 | 1 | 400 | 1 | 400 | 0.0 | 755 |
| MS.gene013018.t1 | MTR_8g461160 | 74.564 | 401 | 94 | 3 | 1 | 400 | 1 | 394 | 0.0 | 567 |
| MS.gene013018.t1 | MTR_7g050750 | 67.003 | 397 | 125 | 3 | 2 | 398 | 4 | 394 | 0.0 | 514 |
| MS.gene013018.t1 | MTR_3g101010 | 67.176 | 393 | 119 | 3 | 6 | 398 | 5 | 387 | 0.0 | 510 |
| MS.gene013018.t1 | MTR_7g451890 | 66.247 | 397 | 128 | 2 | 2 | 398 | 10 | 400 | 2.01e-179 | 505 |
| MS.gene013018.t1 | MTR_7g047780 | 65.995 | 397 | 129 | 2 | 2 | 398 | 10 | 400 | 5.20e-179 | 504 |
| MS.gene013018.t1 | MTR_7g050810 | 66.499 | 397 | 127 | 2 | 2 | 398 | 12 | 402 | 1.13e-177 | 501 |
| MS.gene013018.t1 | MTR_3g101130 | 64.912 | 399 | 129 | 4 | 1 | 399 | 1 | 388 | 2.79e-177 | 499 |
| MS.gene013018.t1 | MTR_3g018740 | 66.244 | 394 | 120 | 4 | 6 | 398 | 5 | 386 | 2.02e-174 | 492 |
| MS.gene013018.t1 | MTR_4g045707 | 63.980 | 397 | 131 | 4 | 1 | 397 | 1 | 385 | 1.48e-172 | 487 |
| MS.gene013018.t1 | MTR_8g027395 | 63.797 | 395 | 127 | 4 | 6 | 399 | 17 | 396 | 6.59e-171 | 483 |
| MS.gene013018.t1 | MTR_3g101030 | 60.050 | 403 | 135 | 4 | 12 | 398 | 35 | 427 | 9.01e-164 | 466 |
| MS.gene013018.t1 | MTR_8g027420 | 62.690 | 394 | 122 | 4 | 6 | 399 | 6 | 374 | 9.16e-164 | 464 |
| MS.gene013018.t1 | MTR_4g088525 | 62.602 | 369 | 126 | 3 | 30 | 398 | 11 | 367 | 2.95e-156 | 445 |
| MS.gene013018.t1 | MTR_3g048000 | 58.145 | 399 | 132 | 5 | 5 | 400 | 26 | 392 | 3.25e-156 | 446 |
| MS.gene013018.t1 | MTR_2g046030 | 58.438 | 397 | 146 | 6 | 6 | 398 | 5 | 386 | 5.29e-149 | 427 |
| MS.gene013018.t1 | MTR_4g088535 | 59.747 | 395 | 127 | 6 | 6 | 399 | 7 | 370 | 6.44e-149 | 427 |
| MS.gene013018.t1 | MTR_2g045980 | 58.690 | 397 | 145 | 6 | 6 | 398 | 5 | 386 | 1.41e-148 | 426 |
| MS.gene013018.t1 | MTR_3g101050 | 59.494 | 395 | 127 | 6 | 10 | 400 | 33 | 398 | 3.74e-146 | 421 |
| MS.gene013018.t1 | MTR_3g015620 | 58.883 | 394 | 130 | 5 | 6 | 398 | 16 | 378 | 1.26e-142 | 411 |
| MS.gene013018.t1 | MTR_3g101200 | 57.500 | 400 | 137 | 8 | 1 | 400 | 26 | 392 | 2.18e-140 | 405 |
| MS.gene013018.t1 | MTR_3g101190 | 54.595 | 370 | 97 | 2 | 30 | 399 | 13 | 311 | 1.81e-129 | 375 |
| MS.gene013018.t1 | MTR_3g102920 | 53.448 | 406 | 134 | 8 | 4 | 399 | 49 | 409 | 1.20e-127 | 374 |
| MS.gene013018.t1 | MTR_7g050830 | 59.133 | 323 | 96 | 2 | 2 | 304 | 12 | 318 | 2.03e-126 | 368 |
| MS.gene013018.t1 | MTR_3g100995 | 63.774 | 265 | 85 | 3 | 134 | 398 | 9 | 262 | 1.54e-115 | 338 |
| MS.gene013018.t1 | MTR_3g018747 | 62.313 | 268 | 77 | 5 | 132 | 398 | 9 | 253 | 1.62e-101 | 301 |
| MS.gene013018.t1 | MTR_3g100010 | 53.459 | 318 | 95 | 5 | 31 | 315 | 40 | 337 | 2.84e-100 | 301 |
| MS.gene013018.t1 | MTR_3g015760 | 60.764 | 288 | 99 | 6 | 113 | 398 | 4 | 279 | 6.24e-99 | 296 |
| MS.gene013018.t1 | MTR_3g114310 | 44.000 | 400 | 193 | 13 | 12 | 397 | 25 | 407 | 1.35e-84 | 264 |
| MS.gene013018.t1 | MTR_3g101110 | 58.197 | 244 | 70 | 3 | 132 | 374 | 68 | 280 | 1.42e-82 | 254 |
| MS.gene013018.t1 | MTR_3g101150 | 77.215 | 158 | 35 | 1 | 243 | 399 | 1 | 158 | 2.08e-82 | 249 |
| MS.gene013018.t1 | MTR_3g100520 | 57.642 | 229 | 74 | 5 | 173 | 399 | 1 | 208 | 2.72e-79 | 243 |
| MS.gene013018.t1 | MTR_3g111160 | 61.161 | 224 | 75 | 4 | 177 | 398 | 5 | 218 | 3.44e-79 | 243 |
| MS.gene013018.t1 | MTR_3g099970 | 62.189 | 201 | 54 | 4 | 132 | 332 | 20 | 198 | 6.37e-76 | 234 |
| MS.gene013018.t1 | MTR_2g046410 | 57.009 | 214 | 78 | 4 | 189 | 398 | 144 | 347 | 2.70e-71 | 228 |
| MS.gene013018.t1 | MTR_3g111150 | 55.866 | 179 | 53 | 2 | 8 | 186 | 1 | 153 | 1.29e-59 | 191 |
| MS.gene013018.t1 | MTR_3g101020 | 53.886 | 193 | 54 | 3 | 206 | 398 | 1 | 158 | 3.50e-59 | 190 |
| MS.gene013018.t1 | MTR_3g102870 | 57.576 | 165 | 62 | 3 | 195 | 357 | 1 | 159 | 2.77e-54 | 177 |
| MS.gene013018.t1 | MTR_3g100990 | 61.940 | 134 | 49 | 1 | 4 | 137 | 3 | 134 | 1.20e-45 | 164 |
| MS.gene013018.t1 | MTR_4g093550 | 58.621 | 87 | 34 | 1 | 5 | 91 | 5 | 89 | 3.97e-23 | 93.2 |
| MS.gene013018.t1 | MTR_3g101140 | 65.217 | 69 | 22 | 1 | 330 | 398 | 48 | 114 | 6.70e-21 | 87.8 |
| MS.gene013018.t1 | MTR_6g046890 | 58.333 | 72 | 24 | 1 | 29 | 94 | 20 | 91 | 9.20e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013018.t1 | AT1G47710 | 52.658 | 395 | 176 | 5 | 6 | 398 | 5 | 390 | 2.80e-135 | 393 |
| MS.gene013018.t1 | AT1G47710 | 52.658 | 395 | 176 | 5 | 6 | 398 | 32 | 417 | 8.79e-135 | 392 |
| MS.gene013018.t1 | AT3G45220 | 44.888 | 401 | 197 | 6 | 6 | 397 | 5 | 390 | 1.16e-114 | 340 |
| MS.gene013018.t1 | AT2G25240 | 45.707 | 396 | 193 | 7 | 6 | 397 | 5 | 382 | 1.17e-110 | 330 |
| MS.gene013018.t1 | AT2G26390 | 45.113 | 399 | 195 | 6 | 6 | 397 | 5 | 386 | 1.41e-109 | 327 |
| MS.gene013018.t1 | AT1G64030 | 44.529 | 393 | 191 | 6 | 6 | 397 | 5 | 371 | 1.21e-102 | 309 |
| MS.gene013018.t1 | AT1G62170 | 43.617 | 376 | 173 | 5 | 29 | 397 | 88 | 431 | 1.46e-98 | 300 |
| MS.gene013018.t1 | AT2G35580 | 43.597 | 367 | 174 | 8 | 36 | 397 | 33 | 371 | 4.66e-95 | 290 |
| MS.gene013018.t1 | AT2G14540 | 44.162 | 394 | 189 | 7 | 6 | 397 | 33 | 397 | 7.57e-95 | 290 |
| MS.gene013018.t1 | AT1G62170 | 40.098 | 409 | 173 | 6 | 29 | 397 | 88 | 464 | 2.63e-91 | 283 |
| MS.gene013018.t1 | AT1G64010 | 43.172 | 227 | 95 | 5 | 173 | 397 | 1 | 195 | 7.83e-53 | 175 |
| MS.gene013018.t1 | AT1G64010 | 42.453 | 212 | 88 | 5 | 188 | 397 | 2 | 181 | 2.03e-46 | 157 |
| MS.gene013018.t1 | AT1G63280 | 52.893 | 121 | 52 | 2 | 129 | 249 | 5 | 120 | 8.43e-31 | 114 |
| MS.gene013018.t1 | AT1G62160 | 40.097 | 207 | 90 | 5 | 195 | 397 | 42 | 218 | 8.66e-31 | 117 |
| MS.gene013018.t1 | AT1G51330 | 53.043 | 115 | 50 | 3 | 130 | 243 | 29 | 140 | 3.14e-28 | 110 |
| MS.gene013018.t1 | AT1G64020 | 37.500 | 112 | 67 | 3 | 13 | 123 | 12 | 121 | 1.81e-15 | 72.8 |
Find 83 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATTCAATATTGCTTT+TGG | 0.154612 | 3.3:+83841600 | MS.gene013018:CDS |
| TCTGGAACGGTACTCTTTAT+TGG | 0.157347 | 3.3:+83841900 | MS.gene013018:CDS |
| TGAGAAAAGAAGTGAATTTA+TGG | 0.175161 | 3.3:+83841154 | MS.gene013018:CDS |
| CCAAAAGCAATATTGAATTT+TGG | 0.207465 | 3.3:-83841600 | None:intergenic |
| AGCTTCTGAATCTGAGTTTC+TGG | 0.214440 | 3.3:+83841530 | MS.gene013018:CDS |
| TTTGAGTTCATCTGTGGATT+TGG | 0.271077 | 3.3:-83840287 | None:intergenic |
| GAAATCAACCGAGGCAATAT+TGG | 0.294424 | 3.3:-83840458 | None:intergenic |
| AGCTGCTGTGGCGACCTCTA+TGG | 0.334836 | 3.3:+83841779 | MS.gene013018:CDS |
| GGAATATGTTGGAAACATAA+AGG | 0.343618 | 3.3:-83841719 | None:intergenic |
| TACAGGAGGTTTGACAAATA+TGG | 0.374282 | 3.3:+83841674 | MS.gene013018:CDS |
| TTTCTTCCTGATGCAAAAGA+TGG | 0.384145 | 3.3:+83841483 | MS.gene013018:CDS |
| TTCTTTGGAGAACAAGTGTT+TGG | 0.385362 | 3.3:-83840149 | None:intergenic |
| TTCTGGCGTGCTGAAGGAGC+TGG | 0.424786 | 3.3:+83841632 | MS.gene013018:CDS |
| TTGATCAGAGAAGATTTGTC+TGG | 0.431879 | 3.3:+83841882 | MS.gene013018:CDS |
| GAGAAAAGAAGTGAATTTAT+GGG | 0.437617 | 3.3:+83841155 | MS.gene013018:CDS |
| GTTAAGCTATTAACAGAGTC+AGG | 0.441864 | 3.3:-83841219 | None:intergenic |
| AGTAGCAACAGTTTCTTTGA+AGG | 0.446891 | 3.3:-83840425 | None:intergenic |
| CTCTTCATGCTTGTCATGAA+AGG | 0.458718 | 3.3:-83841357 | None:intergenic |
| CTCGCCGATGCCACTCCAGC+CGG | 0.463436 | 3.3:+83840340 | MS.gene013018:CDS |
| TTTATTGAAGTAAATGAAAA+GGG | 0.464814 | 3.3:+83841750 | MS.gene013018:CDS |
| AAATATGGTGGACTCTCCTA+TGG | 0.468769 | 3.3:+83841689 | MS.gene013018:CDS |
| AAGTCTATCGGAGTCGGTGG+AGG | 0.469057 | 3.3:-83841834 | None:intergenic |
| AAAAGACTTGTGGAATATGT+TGG | 0.473810 | 3.3:-83841730 | None:intergenic |
| TGCACATGTGGTAGGCGTAC+TGG | 0.475320 | 3.3:+83841810 | MS.gene013018:CDS |
| GTTCATCTGTGGATTTGGAT+TGG | 0.476342 | 3.3:-83840282 | None:intergenic |
| CATAATTGCGGCCGGCGCTG+AGG | 0.476553 | 3.3:+83840228 | MS.gene013018:CDS |
| GTTGTTAGCTTTGACTGAAA+AGG | 0.478445 | 3.3:+83841506 | MS.gene013018:CDS |
| ATAATTGCGGCCGGCGCTGA+GGG | 0.479971 | 3.3:+83840229 | MS.gene013018:CDS |
| GATAGCAGAGGTCCGCCGGC+TGG | 0.482250 | 3.3:-83840355 | None:intergenic |
| CTCGGTTGATTTCGTGAACA+AGG | 0.488115 | 3.3:+83840468 | MS.gene013018:CDS |
| TTACTTCAATAAAAGACTTG+TGG | 0.491983 | 3.3:-83841740 | None:intergenic |
| CAAAGAAACCTTGGTTAGGT+TGG | 0.494142 | 3.3:-83840119 | None:intergenic |
| TGGTCAAAGAAACCTTGGTT+AGG | 0.502434 | 3.3:-83840123 | None:intergenic |
| GCTGCTGTGGCGACCTCTAT+GGG | 0.503495 | 3.3:+83841780 | MS.gene013018:CDS |
| GTCAAACCTCCTGTAGAGAA+AGG | 0.503594 | 3.3:-83841666 | None:intergenic |
| CAGAGGTCCGCCGGCTGGAG+TGG | 0.505778 | 3.3:-83840350 | None:intergenic |
| TTCTTCCTGATGCAAAAGAT+GGG | 0.508568 | 3.3:+83841484 | MS.gene013018:CDS |
| TGAAACTTCTGGCGTGCTGA+AGG | 0.516376 | 3.3:+83841626 | MS.gene013018:CDS |
| GCAAATGCACTAAACTTCAA+AGG | 0.521150 | 3.3:+83841255 | MS.gene013018:CDS |
| CAAGGATTTGAGTTCATCTG+TGG | 0.522212 | 3.3:-83840293 | None:intergenic |
| TCCGCCGGCTGGAGTGGCAT+CGG | 0.524749 | 3.3:-83840344 | None:intergenic |
| GTGCTCAGCATAATTGCGGC+CGG | 0.527395 | 3.3:+83840220 | MS.gene013018:CDS |
| CGTGCTGAAGGAGCTGGGAA+TGG | 0.528470 | 3.3:+83841638 | MS.gene013018:CDS |
| GGCGATGGTCAAAGAAACCT+TGG | 0.531986 | 3.3:-83840128 | None:intergenic |
| GCAACAGTTTCTTTGAAGGA+AGG | 0.533207 | 3.3:-83840421 | None:intergenic |
| TGCATTTGCAAAGATGAGGT+TGG | 0.533879 | 3.3:-83841241 | None:intergenic |
| AAAAGATAGCAGAGGTCCGC+CGG | 0.535576 | 3.3:-83840359 | None:intergenic |
| CATCTGTGGATTTGGATTGG+AGG | 0.542409 | 3.3:-83840279 | None:intergenic |
| TCTGGCGTGCTGAAGGAGCT+GGG | 0.559348 | 3.3:+83841633 | MS.gene013018:CDS |
| ATTCAAATCCAATATTGCCT+CGG | 0.569068 | 3.3:+83840450 | MS.gene013018:CDS |
| TTGTGTAGGACCCTCAGCGC+CGG | 0.572452 | 3.3:-83840239 | None:intergenic |
| TGACTAGGCTGCCATTGAGA+AGG | 0.573438 | 3.3:-83841329 | None:intergenic |
| AATTAATATCACTTCAGAAG+AGG | 0.577255 | 3.3:-83841936 | None:intergenic |
| GGAGAACAAGTGTTTGGCGA+TGG | 0.581128 | 3.3:-83840143 | None:intergenic |
| GCCGATGCCACTCCAGCCGG+CGG | 0.582525 | 3.3:+83840343 | MS.gene013018:CDS |
| TGGTCAGCTACAAAGTCTAT+CGG | 0.589225 | 3.3:-83841846 | None:intergenic |
| AGTCTATCGGAGTCGGTGGA+GGG | 0.595120 | 3.3:-83841833 | None:intergenic |
| CAGAGAAGATTTGTCTGGAA+CGG | 0.597197 | 3.3:+83841887 | MS.gene013018:CDS |
| TTAGTGCATTTGCAAAGATG+AGG | 0.597697 | 3.3:-83841245 | None:intergenic |
| TCATGAAAGGAACCTTGACT+AGG | 0.603282 | 3.3:-83841344 | None:intergenic |
| AAACTTCAAAGGAGCATGGT+CGG | 0.604975 | 3.3:+83841266 | MS.gene013018:CDS |
| AGAAACGAGTTGAGAGGACA+AGG | 0.607327 | 3.3:-83840311 | None:intergenic |
| ATGGGACAAAAGTGCACATG+TGG | 0.613422 | 3.3:+83841798 | MS.gene013018:CDS |
| CACTAAACTTCAAAGGAGCA+TGG | 0.613685 | 3.3:+83841262 | MS.gene013018:CDS |
| TCTCAATGGCAGCCTAGTCA+AGG | 0.614260 | 3.3:+83841332 | MS.gene013018:CDS |
| AAAGGGAACTGAAGCTGCTG+TGG | 0.620712 | 3.3:+83841767 | MS.gene013018:CDS |
| ACAAAGTCTATCGGAGTCGG+TGG | 0.621531 | 3.3:-83841837 | None:intergenic |
| GCTACAAAGTCTATCGGAGT+CGG | 0.623306 | 3.3:-83841840 | None:intergenic |
| GTGAGAAGTTGATCTTGTGT+AGG | 0.627157 | 3.3:-83840253 | None:intergenic |
| CATTGTGCTCAGCATAATTG+CGG | 0.632455 | 3.3:+83840216 | MS.gene013018:CDS |
| AGCACAATGTGGAGTGACAA+CGG | 0.634618 | 3.3:-83840202 | None:intergenic |
| AGGAGGTTTGACAAATATGG+TGG | 0.635066 | 3.3:+83841677 | MS.gene013018:CDS |
| TGTGGATTTGGATTGGAGGA+AGG | 0.644070 | 3.3:-83840275 | None:intergenic |
| CACATAAGAAACGAGTTGAG+AGG | 0.646706 | 3.3:-83840317 | None:intergenic |
| GACAAAAGTGCACATGTGGT+AGG | 0.651168 | 3.3:+83841802 | MS.gene013018:CDS |
| CCTCGAGAAACAGTGAGAGT+AGG | 0.663609 | 3.3:+83841564 | MS.gene013018:CDS |
| CAATTATGCTGAGCACAATG+TGG | 0.663667 | 3.3:-83840213 | None:intergenic |
| ATCAATCACCAACCTAACCA+AGG | 0.679210 | 3.3:+83840111 | MS.gene013018:CDS |
| CCTACTCTCACTGTTTCTCG+AGG | 0.682867 | 3.3:-83841564 | None:intergenic |
| CTTCAAAGGAGCATGGTCGG+AGG | 0.684237 | 3.3:+83841269 | MS.gene013018:CDS |
| AAGCTATTAACAGAGTCAGG+TGG | 0.703343 | 3.3:-83841216 | None:intergenic |
| CTTGTTCACGAAATCAACCG+AGG | 0.755326 | 3.3:-83840467 | None:intergenic |
| CCATTGACAAAAGATAGCAG+AGG | 0.769813 | 3.3:-83840367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTGTATATTTATTTAATT+TGG | + | chr3.3:83840785-83840804 | MS.gene013018:intron | 10.0% |
| !! | AAGAATAAAGATGAATATTT+AGG | - | chr3.3:83840668-83840687 | None:intergenic | 15.0% |
| !! | TTTATTGAAGTAAATGAAAA+GGG | + | chr3.3:83841750-83841769 | MS.gene013018:CDS | 15.0% |
| !!! | TATACACAACTTTAAAAAAA+TGG | - | chr3.3:83840774-83840793 | None:intergenic | 15.0% |
| !!! | TATATTTGATGTTGTTTTAA+AGG | + | chr3.3:83841122-83841141 | MS.gene013018:intron | 15.0% |
| !!! | TTTTAGTAATTTTAACACAA+AGG | + | chr3.3:83840709-83840728 | MS.gene013018:intron | 15.0% |
| !!! | TTTTATTGAAGTAAATGAAA+AGG | + | chr3.3:83841749-83841768 | MS.gene013018:CDS | 15.0% |
| !! | AATTCAAACTTAAAAAAGAG+GGG | - | chr3.3:83840509-83840528 | None:intergenic | 20.0% |
| !! | CAATTCAAACTTAAAAAAGA+GGG | - | chr3.3:83840510-83840529 | None:intergenic | 20.0% |
| !! | TCAATTCAAACTTAAAAAAG+AGG | - | chr3.3:83840511-83840530 | None:intergenic | 20.0% |
| !!! | CAAAATTCAATATTGCTTTT+GGG | + | chr3.3:83841601-83841620 | MS.gene013018:CDS | 20.0% |
| !!! | CAATTTATTAGTGTTTTTGA+TGG | + | chr3.3:83841381-83841400 | MS.gene013018:CDS | 20.0% |
| !!! | TTACAAAAGAAGTTGATATT+TGG | - | chr3.3:83840920-83840939 | None:intergenic | 20.0% |
| ! | ATTAATACCTAACAACAGAT+AGG | - | chr3.3:83840996-83841015 | None:intergenic | 25.0% |
| ! | CATATATTCTGTTGCTAAAT+TGG | - | chr3.3:83841038-83841057 | None:intergenic | 25.0% |
| ! | GAGAAAAGAAGTGAATTTAT+GGG | + | chr3.3:83841155-83841174 | MS.gene013018:CDS | 25.0% |
| ! | GATATTTGGAAAAATGCTAA+AGG | - | chr3.3:83840906-83840925 | None:intergenic | 25.0% |
| ! | TGAGAAAAGAAGTGAATTTA+TGG | + | chr3.3:83841154-83841173 | MS.gene013018:CDS | 25.0% |
| ! | TGTTATGCTAATTTGATGAA+TGG | + | chr3.3:83840948-83840967 | MS.gene013018:intron | 25.0% |
| ! | TTACTTCAATAAAAGACTTG+TGG | - | chr3.3:83841743-83841762 | None:intergenic | 25.0% |
| ! | TTCATTATTTGATGAAACCA+TGG | + | chr3.3:83840619-83840638 | MS.gene013018:intron | 25.0% |
| !! | AGAAAATCCTTTGTTTAGAA+AGG | - | chr3.3:83840842-83840861 | None:intergenic | 25.0% |
| !! | CCAAAAGCAATATTGAATTT+TGG | - | chr3.3:83841603-83841622 | None:intergenic | 25.0% |
| !! | CCAAAATTCAATATTGCTTT+TGG | + | chr3.3:83841600-83841619 | MS.gene013018:CDS | 25.0% |
| !! | CTTTTCTTTGTATTCTTCTT+TGG | - | chr3.3:83840167-83840186 | None:intergenic | 25.0% |
| !!! | TAGTAATTTTAACACAAAGG+AGG | + | chr3.3:83840712-83840731 | MS.gene013018:intron | 25.0% |
| !!! | TATGATTTTAACCTTCTCAA+TGG | + | chr3.3:83841318-83841337 | MS.gene013018:CDS | 25.0% |
| AAAAGACTTGTGGAATATGT+TGG | - | chr3.3:83841733-83841752 | None:intergenic | 30.0% | |
| ATGAAACCATGGAATACTTA+GGG | + | chr3.3:83840630-83840649 | MS.gene013018:intron | 30.0% | |
| ATTCAAATCCAATATTGCCT+CGG | + | chr3.3:83840450-83840469 | MS.gene013018:CDS | 30.0% | |
| ATTCTGTTGCTAAATTGGTT+TGG | - | chr3.3:83841033-83841052 | None:intergenic | 30.0% | |
| CATACAACCTTTCTAAACAA+AGG | + | chr3.3:83840832-83840851 | MS.gene013018:intron | 30.0% | |
| CATGCTTATAAAAAAGACGA+AGG | - | chr3.3:83841416-83841435 | None:intergenic | 30.0% | |
| CTCTGATCAAAAACAAGAAA+GGG | - | chr3.3:83841872-83841891 | None:intergenic | 30.0% | |
| GGAATATGTTGGAAACATAA+AGG | - | chr3.3:83841722-83841741 | None:intergenic | 30.0% | |
| TCAGGAAAATTCTATTCTCT+TGG | - | chr3.3:83840882-83840901 | None:intergenic | 30.0% | |
| TCTCTGATCAAAAACAAGAA+AGG | - | chr3.3:83841873-83841892 | None:intergenic | 30.0% | |
| ! | CTTTGTTTAGAAAGGTTGTA+TGG | - | chr3.3:83840834-83840853 | None:intergenic | 30.0% |
| !! | ACATAAAGGTTTTGATCCAT+AGG | - | chr3.3:83841708-83841727 | None:intergenic | 30.0% |
| !!! | CGTCTTTTTTATAAGCATGA+TGG | + | chr3.3:83841417-83841436 | MS.gene013018:CDS | 30.0% |
| AGTAGCAACAGTTTCTTTGA+AGG | - | chr3.3:83840428-83840447 | None:intergenic | 35.0% | |
| ATGAATATTTAGGTCACGCA+TGG | - | chr3.3:83840658-83840677 | None:intergenic | 35.0% | |
| GATGAAACCATGGAATACTT+AGG | + | chr3.3:83840629-83840648 | MS.gene013018:intron | 35.0% | |
| GCAAATGCACTAAACTTCAA+AGG | + | chr3.3:83841255-83841274 | MS.gene013018:CDS | 35.0% | |
| GTTAAGCTATTAACAGAGTC+AGG | - | chr3.3:83841222-83841241 | None:intergenic | 35.0% | |
| TACAGGAGGTTTGACAAATA+TGG | + | chr3.3:83841674-83841693 | MS.gene013018:CDS | 35.0% | |
| TGATCAAAAACAAGAAAGGG+TGG | - | chr3.3:83841869-83841888 | None:intergenic | 35.0% | |
| TGGAAAAATGCTAAAGGATC+AGG | - | chr3.3:83840900-83840919 | None:intergenic | 35.0% | |
| TTAGTGCATTTGCAAAGATG+AGG | - | chr3.3:83841248-83841267 | None:intergenic | 35.0% | |
| TTCTTCCTGATGCAAAAGAT+GGG | + | chr3.3:83841484-83841503 | MS.gene013018:CDS | 35.0% | |
| TTGATCAGAGAAGATTTGTC+TGG | + | chr3.3:83841882-83841901 | MS.gene013018:CDS | 35.0% | |
| TTTCTTCCTGATGCAAAAGA+TGG | + | chr3.3:83841483-83841502 | MS.gene013018:CDS | 35.0% | |
| ! | ATCTTTTGTCAATGGTGTGT+GGG | + | chr3.3:83840375-83840394 | MS.gene013018:CDS | 35.0% |
| ! | TATCTTTTGTCAATGGTGTG+TGG | + | chr3.3:83840374-83840393 | MS.gene013018:CDS | 35.0% |
| ! | TTCTTTGGAGAACAAGTGTT+TGG | - | chr3.3:83840152-83840171 | None:intergenic | 35.0% |
| ! | TTTGAGTTCATCTGTGGATT+TGG | - | chr3.3:83840290-83840309 | None:intergenic | 35.0% |
| !! | AATTTTAACACAAAGGAGGC+AGG | + | chr3.3:83840716-83840735 | MS.gene013018:intron | 35.0% |
| !! | ATGGTTTTACCTTTCTCTAC+AGG | + | chr3.3:83841657-83841676 | MS.gene013018:CDS | 35.0% |
| !! | ATTTTAACACAAAGGAGGCA+GGG | + | chr3.3:83840717-83840736 | MS.gene013018:intron | 35.0% |
| !! | GTTGTTAGCTTTGACTGAAA+AGG | + | chr3.3:83841506-83841525 | MS.gene013018:CDS | 35.0% |
| AAGCTATTAACAGAGTCAGG+TGG | - | chr3.3:83841219-83841238 | None:intergenic | 40.0% | |
| AGCTTCTGAATCTGAGTTTC+TGG | + | chr3.3:83841530-83841549 | MS.gene013018:CDS | 40.0% | |
| AGGAGGTTTGACAAATATGG+TGG | + | chr3.3:83841677-83841696 | MS.gene013018:CDS | 40.0% | |
| ATCAATCACCAACCTAACCA+AGG | + | chr3.3:83840111-83840130 | MS.gene013018:CDS | 40.0% | |
| ATGGTACCCTAAGTATTCCA+TGG | - | chr3.3:83840639-83840658 | None:intergenic | 40.0% | |
| CAAAGAAACCTTGGTTAGGT+TGG | - | chr3.3:83840122-83840141 | None:intergenic | 40.0% | |
| CAATTATGCTGAGCACAATG+TGG | - | chr3.3:83840216-83840235 | None:intergenic | 40.0% | |
| CACTAAACTTCAAAGGAGCA+TGG | + | chr3.3:83841262-83841281 | MS.gene013018:CDS | 40.0% | |
| CAGAGAAGATTTGTCTGGAA+CGG | + | chr3.3:83841887-83841906 | MS.gene013018:CDS | 40.0% | |
| CATTGTGCTCAGCATAATTG+CGG | + | chr3.3:83840216-83840235 | MS.gene013018:CDS | 40.0% | |
| CCATTGACAAAAGATAGCAG+AGG | - | chr3.3:83840370-83840389 | None:intergenic | 40.0% | |
| CTCTTCATGCTTGTCATGAA+AGG | - | chr3.3:83841360-83841379 | None:intergenic | 40.0% | |
| GAAATCAACCGAGGCAATAT+TGG | - | chr3.3:83840461-83840480 | None:intergenic | 40.0% | |
| GTTCATCTGTGGATTTGGAT+TGG | - | chr3.3:83840285-83840304 | None:intergenic | 40.0% | |
| TCATGAAAGGAACCTTGACT+AGG | - | chr3.3:83841347-83841366 | None:intergenic | 40.0% | |
| TGCATTTGCAAAGATGAGGT+TGG | - | chr3.3:83841244-83841263 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.3:83841174-83841193 | MS.gene013018:CDS | 40.0% | |
| TGGTCAAAGAAACCTTGGTT+AGG | - | chr3.3:83840126-83840145 | None:intergenic | 40.0% | |
| TGGTCAGCTACAAAGTCTAT+CGG | - | chr3.3:83841849-83841868 | None:intergenic | 40.0% | |
| ! | AAACTTCAAAGGAGCATGGT+CGG | + | chr3.3:83841266-83841285 | MS.gene013018:CDS | 40.0% |
| ! | AACAACCCATCTTTTGCATC+AGG | - | chr3.3:83841492-83841511 | None:intergenic | 40.0% |
| ! | CAAGGATTTGAGTTCATCTG+TGG | - | chr3.3:83840296-83840315 | None:intergenic | 40.0% |
| ! | CACATAAGAAACGAGTTGAG+AGG | - | chr3.3:83840320-83840339 | None:intergenic | 40.0% |
| ! | CCTCTGCTATCTTTTGTCAA+TGG | + | chr3.3:83840367-83840386 | MS.gene013018:CDS | 40.0% |
| ! | GCAACAGTTTCTTTGAAGGA+AGG | - | chr3.3:83840424-83840443 | None:intergenic | 40.0% |
| ! | GTGAGAAGTTGATCTTGTGT+AGG | - | chr3.3:83840256-83840275 | None:intergenic | 40.0% |
| ! | GTTTTACCTTTCTCTACAGG+AGG | + | chr3.3:83841660-83841679 | MS.gene013018:CDS | 40.0% |
| ! | TCTGGAACGGTACTCTTTAT+TGG | + | chr3.3:83841900-83841919 | MS.gene013018:CDS | 40.0% |
| ! | TTTTAACACAAAGGAGGCAG+GGG | + | chr3.3:83840718-83840737 | MS.gene013018:intron | 40.0% |
| !! | AAATATGGTGGACTCTCCTA+TGG | + | chr3.3:83841689-83841708 | MS.gene013018:CDS | 40.0% |
| AGCACAATGTGGAGTGACAA+CGG | - | chr3.3:83840205-83840224 | None:intergenic | 45.0% | |
| AGTCTCGCCTATCTGTTGTT+AGG | + | chr3.3:83840986-83841005 | MS.gene013018:intron | 45.0% | |
| CTTGTTCACGAAATCAACCG+AGG | - | chr3.3:83840470-83840489 | None:intergenic | 45.0% | |
| GCTACAAAGTCTATCGGAGT+CGG | - | chr3.3:83841843-83841862 | None:intergenic | 45.0% | |
| GTCAAACCTCCTGTAGAGAA+AGG | - | chr3.3:83841669-83841688 | None:intergenic | 45.0% | |
| ! | AGAAACGAGTTGAGAGGACA+AGG | - | chr3.3:83840314-83840333 | None:intergenic | 45.0% |
| ! | ATGGGACAAAAGTGCACATG+TGG | + | chr3.3:83841798-83841817 | MS.gene013018:CDS | 45.0% |
| ! | CATCTGTGGATTTGGATTGG+AGG | - | chr3.3:83840282-83840301 | None:intergenic | 45.0% |
| ! | CTCGGTTGATTTCGTGAACA+AGG | + | chr3.3:83840468-83840487 | MS.gene013018:CDS | 45.0% |
| ! | GACAAAAGTGCACATGTGGT+AGG | + | chr3.3:83841802-83841821 | MS.gene013018:CDS | 45.0% |
| ! | GCTTTTGGGCTTGAAACTTC+TGG | + | chr3.3:83841615-83841634 | MS.gene013018:CDS | 45.0% |
| ! | TGTGCACTTTTGTCCCATAG+AGG | - | chr3.3:83841796-83841815 | None:intergenic | 45.0% |
| ! | TGTGGATTTGGATTGGAGGA+AGG | - | chr3.3:83840278-83840297 | None:intergenic | 45.0% |
| AAAAGATAGCAGAGGTCCGC+CGG | - | chr3.3:83840362-83840381 | None:intergenic | 50.0% | |
| AAAGGGAACTGAAGCTGCTG+TGG | + | chr3.3:83841767-83841786 | MS.gene013018:CDS | 50.0% | |
| ACAAAGTCTATCGGAGTCGG+TGG | - | chr3.3:83841840-83841859 | None:intergenic | 50.0% | |
| CCTCGAGAAACAGTGAGAGT+AGG | + | chr3.3:83841564-83841583 | MS.gene013018:CDS | 50.0% | |
| GGAGAACAAGTGTTTGGCGA+TGG | - | chr3.3:83840146-83840165 | None:intergenic | 50.0% | |
| GGCGATGGTCAAAGAAACCT+TGG | - | chr3.3:83840131-83840150 | None:intergenic | 50.0% | |
| TCTCAATGGCAGCCTAGTCA+AGG | + | chr3.3:83841332-83841351 | MS.gene013018:CDS | 50.0% | |
| TGAAACTTCTGGCGTGCTGA+AGG | + | chr3.3:83841626-83841645 | MS.gene013018:CDS | 50.0% | |
| TGACTAGGCTGCCATTGAGA+AGG | - | chr3.3:83841332-83841351 | None:intergenic | 50.0% | |
| ! | CCTACTCTCACTGTTTCTCG+AGG | - | chr3.3:83841567-83841586 | None:intergenic | 50.0% |
| AAGTCTATCGGAGTCGGTGG+AGG | - | chr3.3:83841837-83841856 | None:intergenic | 55.0% | |
| AGTCTATCGGAGTCGGTGGA+GGG | - | chr3.3:83841836-83841855 | None:intergenic | 55.0% | |
| GTGCTCAGCATAATTGCGGC+CGG | + | chr3.3:83840220-83840239 | MS.gene013018:CDS | 55.0% | |
| TGCACATGTGGTAGGCGTAC+TGG | + | chr3.3:83841810-83841829 | MS.gene013018:CDS | 55.0% | |
| ! | AAAGGAGGCAGGGGCACATA+TGG | + | chr3.3:83840727-83840746 | MS.gene013018:intron | 55.0% |
| ! | CTTCAAAGGAGCATGGTCGG+AGG | + | chr3.3:83841269-83841288 | MS.gene013018:CDS | 55.0% |
| AGCTGCTGTGGCGACCTCTA+TGG | + | chr3.3:83841779-83841798 | MS.gene013018:CDS | 60.0% | |
| CGTGCTGAAGGAGCTGGGAA+TGG | + | chr3.3:83841638-83841657 | MS.gene013018:CDS | 60.0% | |
| GCTGCTGTGGCGACCTCTAT+GGG | + | chr3.3:83841780-83841799 | MS.gene013018:CDS | 60.0% | |
| TCTGGCGTGCTGAAGGAGCT+GGG | + | chr3.3:83841633-83841652 | MS.gene013018:CDS | 60.0% | |
| TTCTGGCGTGCTGAAGGAGC+TGG | + | chr3.3:83841632-83841651 | MS.gene013018:CDS | 60.0% | |
| TTGTGTAGGACCCTCAGCGC+CGG | - | chr3.3:83840242-83840261 | None:intergenic | 60.0% | |
| ! | ATAATTGCGGCCGGCGCTGA+GGG | + | chr3.3:83840229-83840248 | MS.gene013018:CDS | 60.0% |
| CATAATTGCGGCCGGCGCTG+AGG | + | chr3.3:83840228-83840247 | MS.gene013018:CDS | 65.0% | |
| CTCGCCGATGCCACTCCAGC+CGG | + | chr3.3:83840340-83840359 | MS.gene013018:CDS | 70.0% | |
| GATAGCAGAGGTCCGCCGGC+TGG | - | chr3.3:83840358-83840377 | None:intergenic | 70.0% | |
| ! | TCCGCCGGCTGGAGTGGCAT+CGG | - | chr3.3:83840347-83840366 | None:intergenic | 70.0% |
| GCCGATGCCACTCCAGCCGG+CGG | + | chr3.3:83840343-83840362 | MS.gene013018:CDS | 75.0% | |
| ! | CAGAGGTCCGCCGGCTGGAG+TGG | - | chr3.3:83840353-83840372 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83840094 | 83841950 | 83840094 | ID=MS.gene013018 |
| chr3.3 | mRNA | 83840094 | 83841950 | 83840094 | ID=MS.gene013018.t1;Parent=MS.gene013018 |
| chr3.3 | exon | 83840094 | 83840489 | 83840094 | ID=MS.gene013018.t1.exon1;Parent=MS.gene013018.t1 |
| chr3.3 | CDS | 83840094 | 83840489 | 83840094 | ID=cds.MS.gene013018.t1;Parent=MS.gene013018.t1 |
| chr3.3 | exon | 83841144 | 83841950 | 83841144 | ID=MS.gene013018.t1.exon2;Parent=MS.gene013018.t1 |
| chr3.3 | CDS | 83841144 | 83841950 | 83841144 | ID=cds.MS.gene013018.t1;Parent=MS.gene013018.t1 |
| Gene Sequence |
| Protein sequence |
