Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013023.t1 | XP_013455531.1 | 81.5 | 390 | 41 | 5 | 1 | 361 | 1 | 388 | 6.70E-168 | 600.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013023.t1 | Q9S7T8 | 49.6 | 387 | 163 | 5 | 5 | 359 | 4 | 390 | 2.8e-98 | 360.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013023.t1 | A0A072UIQ8 | 81.5 | 390 | 41 | 5 | 1 | 361 | 1 | 388 | 4.8e-168 | 600.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045585 | MS.gene013023 | PPI |
| MS.gene065945 | MS.gene013023 | PPI |
| MS.gene031697 | MS.gene013023 | PPI |
| MS.gene065944 | MS.gene013023 | PPI |
| MS.gene006610 | MS.gene013023 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013023.t1 | MTR_4g045707 | 81.538 | 390 | 41 | 5 | 1 | 361 | 1 | 388 | 0.0 | 619 |
| MS.gene013023.t1 | MTR_3g101010 | 66.410 | 390 | 101 | 4 | 1 | 361 | 1 | 389 | 4.73e-168 | 474 |
| MS.gene013023.t1 | MTR_8g027395 | 62.597 | 385 | 111 | 3 | 6 | 361 | 17 | 397 | 1.17e-160 | 456 |
| MS.gene013023.t1 | MTR_3g018740 | 61.299 | 385 | 117 | 4 | 5 | 359 | 4 | 386 | 2.23e-155 | 442 |
| MS.gene013023.t1 | MTR_3g048000 | 61.458 | 384 | 98 | 6 | 7 | 360 | 28 | 391 | 4.99e-155 | 441 |
| MS.gene013023.t1 | MTR_3g101050 | 62.500 | 368 | 118 | 7 | 10 | 360 | 33 | 397 | 9.51e-148 | 423 |
| MS.gene013023.t1 | MTR_2g046030 | 58.549 | 386 | 126 | 5 | 5 | 359 | 4 | 386 | 3.55e-147 | 421 |
| MS.gene013023.t1 | MTR_8g461160 | 57.179 | 397 | 127 | 7 | 1 | 359 | 1 | 392 | 1.10e-146 | 420 |
| MS.gene013023.t1 | MTR_3g101030 | 58.897 | 399 | 113 | 9 | 11 | 361 | 34 | 429 | 6.67e-146 | 419 |
| MS.gene013023.t1 | MTR_4g088525 | 60.326 | 368 | 107 | 5 | 25 | 360 | 8 | 368 | 1.38e-145 | 416 |
| MS.gene013023.t1 | MTR_2g045980 | 58.549 | 386 | 126 | 5 | 5 | 359 | 4 | 386 | 1.83e-145 | 417 |
| MS.gene013023.t1 | MTR_7g451890 | 56.298 | 389 | 137 | 4 | 6 | 361 | 14 | 402 | 3.51e-141 | 406 |
| MS.gene013023.t1 | MTR_3g101180 | 55.528 | 398 | 138 | 6 | 1 | 359 | 1 | 398 | 3.95e-141 | 406 |
| MS.gene013023.t1 | MTR_8g027420 | 57.403 | 385 | 120 | 6 | 6 | 361 | 6 | 375 | 6.24e-141 | 405 |
| MS.gene013023.t1 | MTR_7g050750 | 55.897 | 390 | 139 | 4 | 5 | 361 | 7 | 396 | 1.17e-139 | 402 |
| MS.gene013023.t1 | MTR_7g047780 | 57.069 | 389 | 134 | 4 | 6 | 361 | 14 | 402 | 1.36e-139 | 402 |
| MS.gene013023.t1 | MTR_3g101130 | 55.330 | 394 | 138 | 7 | 1 | 361 | 1 | 389 | 6.24e-138 | 398 |
| MS.gene013023.t1 | MTR_7g050810 | 55.725 | 393 | 133 | 7 | 6 | 361 | 16 | 404 | 5.00e-135 | 391 |
| MS.gene013023.t1 | MTR_4g088535 | 57.068 | 382 | 115 | 7 | 4 | 356 | 5 | 366 | 9.61e-133 | 384 |
| MS.gene013023.t1 | MTR_3g102920 | 55.270 | 389 | 105 | 9 | 4 | 359 | 56 | 408 | 9.87e-124 | 362 |
| MS.gene013023.t1 | MTR_3g100995 | 66.926 | 257 | 82 | 2 | 105 | 361 | 11 | 264 | 9.54e-121 | 349 |
| MS.gene013023.t1 | MTR_3g101200 | 53.908 | 371 | 153 | 6 | 1 | 359 | 26 | 390 | 3.23e-119 | 350 |
| MS.gene013023.t1 | MTR_3g015620 | 52.850 | 386 | 127 | 6 | 6 | 359 | 16 | 378 | 7.28e-115 | 338 |
| MS.gene013023.t1 | MTR_3g018747 | 66.923 | 260 | 70 | 3 | 101 | 359 | 9 | 253 | 8.26e-114 | 331 |
| MS.gene013023.t1 | MTR_3g015760 | 60.967 | 269 | 99 | 4 | 93 | 359 | 15 | 279 | 1.26e-99 | 296 |
| MS.gene013023.t1 | MTR_3g101190 | 45.902 | 366 | 106 | 6 | 25 | 361 | 10 | 312 | 1.29e-94 | 285 |
| MS.gene013023.t1 | MTR_3g111160 | 70.000 | 210 | 60 | 3 | 153 | 361 | 13 | 220 | 2.56e-91 | 273 |
| MS.gene013023.t1 | MTR_3g100520 | 62.162 | 222 | 69 | 3 | 142 | 361 | 1 | 209 | 2.16e-90 | 270 |
| MS.gene013023.t1 | MTR_2g046410 | 65.217 | 207 | 64 | 3 | 158 | 359 | 144 | 347 | 8.33e-86 | 263 |
| MS.gene013023.t1 | MTR_3g099970 | 67.347 | 196 | 47 | 3 | 101 | 296 | 20 | 198 | 1.32e-85 | 258 |
| MS.gene013023.t1 | MTR_7g050830 | 46.667 | 315 | 106 | 5 | 6 | 269 | 16 | 319 | 2.88e-81 | 251 |
| MS.gene013023.t1 | MTR_3g100010 | 47.910 | 311 | 85 | 5 | 31 | 279 | 42 | 337 | 6.39e-80 | 248 |
| MS.gene013023.t1 | MTR_3g101110 | 44.248 | 339 | 99 | 5 | 1 | 335 | 28 | 280 | 3.36e-79 | 244 |
| MS.gene013023.t1 | MTR_3g114310 | 37.563 | 394 | 196 | 12 | 11 | 361 | 24 | 410 | 4.38e-72 | 230 |
| MS.gene013023.t1 | MTR_3g101020 | 57.754 | 187 | 52 | 2 | 175 | 361 | 1 | 160 | 1.93e-65 | 204 |
| MS.gene013023.t1 | MTR_3g101150 | 65.823 | 158 | 50 | 3 | 207 | 360 | 1 | 158 | 7.17e-63 | 198 |
| MS.gene013023.t1 | MTR_3g102870 | 58.442 | 154 | 64 | 0 | 164 | 317 | 1 | 154 | 8.33e-57 | 183 |
| MS.gene013023.t1 | MTR_3g111150 | 56.329 | 158 | 54 | 3 | 8 | 155 | 1 | 153 | 7.44e-44 | 149 |
| MS.gene013023.t1 | MTR_3g100990 | 44.516 | 155 | 55 | 4 | 4 | 129 | 3 | 155 | 7.53e-26 | 108 |
| MS.gene013023.t1 | MTR_3g101140 | 55.556 | 90 | 34 | 3 | 277 | 361 | 28 | 116 | 1.06e-20 | 86.7 |
| MS.gene013023.t1 | MTR_4g093550 | 64.615 | 65 | 23 | 0 | 6 | 70 | 6 | 70 | 3.26e-20 | 84.7 |
| MS.gene013023.t1 | MTR_6g046890 | 63.158 | 57 | 21 | 0 | 14 | 70 | 7 | 63 | 3.47e-14 | 69.3 |
| MS.gene013023.t1 | MTR_3g101080 | 81.250 | 32 | 6 | 0 | 320 | 351 | 8 | 39 | 9.86e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013023.t1 | AT1G47710 | 49.612 | 387 | 163 | 5 | 5 | 359 | 4 | 390 | 7.54e-125 | 365 |
| MS.gene013023.t1 | AT1G47710 | 49.612 | 387 | 163 | 5 | 5 | 359 | 31 | 417 | 4.93e-124 | 363 |
| MS.gene013023.t1 | AT2G25240 | 46.214 | 383 | 171 | 8 | 6 | 358 | 5 | 382 | 1.24e-104 | 313 |
| MS.gene013023.t1 | AT2G26390 | 44.961 | 387 | 174 | 9 | 6 | 358 | 5 | 386 | 6.81e-100 | 301 |
| MS.gene013023.t1 | AT3G45220 | 42.347 | 392 | 181 | 8 | 6 | 358 | 5 | 390 | 9.16e-97 | 293 |
| MS.gene013023.t1 | AT1G62170 | 39.898 | 391 | 176 | 9 | 6 | 360 | 66 | 433 | 8.30e-81 | 253 |
| MS.gene013023.t1 | AT1G64030 | 41.026 | 390 | 172 | 9 | 5 | 358 | 4 | 371 | 2.13e-79 | 248 |
| MS.gene013023.t1 | AT2G14540 | 41.753 | 388 | 170 | 9 | 5 | 358 | 32 | 397 | 1.37e-77 | 244 |
| MS.gene013023.t1 | AT1G62170 | 36.150 | 426 | 176 | 8 | 6 | 360 | 66 | 466 | 7.69e-74 | 236 |
| MS.gene013023.t1 | AT2G35580 | 38.814 | 371 | 166 | 12 | 27 | 358 | 23 | 371 | 2.45e-64 | 209 |
| MS.gene013023.t1 | AT1G64010 | 50.000 | 218 | 85 | 5 | 142 | 358 | 1 | 195 | 5.62e-62 | 197 |
| MS.gene013023.t1 | AT1G64010 | 49.754 | 203 | 78 | 5 | 157 | 358 | 2 | 181 | 2.84e-55 | 179 |
| MS.gene013023.t1 | AT1G62160 | 45.109 | 184 | 76 | 3 | 179 | 360 | 60 | 220 | 2.26e-34 | 126 |
| MS.gene013023.t1 | AT1G63280 | 53.913 | 115 | 49 | 2 | 101 | 213 | 8 | 120 | 3.84e-33 | 120 |
| MS.gene013023.t1 | AT1G51330 | 50.450 | 111 | 52 | 2 | 100 | 207 | 30 | 140 | 3.23e-25 | 101 |
Find 93 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATGCACTGTACTTTAA+AGG | 0.110889 | 3.3:-83785528 | MS.gene013023:CDS |
| CCAAGGTTCAATGTCTCATT+TGG | 0.239058 | 3.3:-83785198 | MS.gene013023:CDS |
| CAGTGCCTTCTTCGTTTACT+TGG | 0.246075 | 3.3:+83785043 | None:intergenic |
| CTTGAGAAAGATTAAACTTA+TGG | 0.265790 | 3.3:+83785244 | None:intergenic |
| TCATCTTGGCCCTGTTTATA+AGG | 0.290119 | 3.3:+83785360 | None:intergenic |
| TTACTTGGATGAAAGACTTT+TGG | 0.294262 | 3.3:+83785058 | None:intergenic |
| AAAATCATAGTCTTTAGTTT+TGG | 0.306750 | 3.3:+83785479 | None:intergenic |
| GAGACAAATGGACTTATTAA+AGG | 0.310786 | 3.3:-83785597 | MS.gene013023:CDS |
| CAGGTGCTCAATCCTCTTGC+TGG | 0.322054 | 3.3:-83784883 | MS.gene013023:CDS |
| ACACATTACATACCTTGTTC+TGG | 0.335608 | 3.3:+83785944 | None:intergenic |
| CACTGTACTTTAAAGGACTA+TGG | 0.351189 | 3.3:-83785521 | MS.gene013023:CDS |
| ACTTTGTCTTCCTTATAAAC+AGG | 0.354807 | 3.3:-83785370 | MS.gene013023:CDS |
| TCCCGGAGGTTTGACAAATA+TGG | 0.372940 | 3.3:-83785124 | MS.gene013023:CDS |
| CAAGGTTCAATGTCTCATTT+GGG | 0.379500 | 3.3:-83785197 | MS.gene013023:CDS |
| AGCAAAGAGGATCAATATAT+TGG | 0.387919 | 3.3:-83785414 | MS.gene013023:CDS |
| AACCCATGAATTGACTTCAT+TGG | 0.393781 | 3.3:+83785626 | None:intergenic |
| CACAATCCTCTTTGTTGGAC+AGG | 0.397313 | 3.3:-83784902 | MS.gene013023:CDS |
| ACCGGCACAATCCTCTTTGT+TGG | 0.412739 | 3.3:-83784907 | MS.gene013023:CDS |
| GTCGAGAAGTTGTTGCTTTG+TGG | 0.421022 | 3.3:+83786126 | None:intergenic |
| CTCAGCTTTGGTTGAAAAGG+TGG | 0.438522 | 3.3:-83785289 | MS.gene013023:CDS |
| AATCTTTCTCAAGTCAAAGT+AGG | 0.444523 | 3.3:-83785234 | MS.gene013023:CDS |
| GAAATCAACGGAAGCCAACT+TGG | 0.444733 | 3.3:+83785966 | None:intergenic |
| CACCATATTTGTCAAACCTC+CGG | 0.448925 | 3.3:+83785122 | None:intergenic |
| CGAAAACACGATGTTGTTGT+TGG | 0.450424 | 3.3:+83786201 | None:intergenic |
| TAGAGAATCGGCGGTCATCT+TGG | 0.453950 | 3.3:+83785346 | None:intergenic |
| TGACCAATGAAGTCAATTCA+TGG | 0.453988 | 3.3:-83785629 | MS.gene013023:CDS |
| CAACGGAAGCCAACTTGGCT+TGG | 0.461840 | 3.3:+83785971 | None:intergenic |
| ACTCTCAGCTTTGGTTGAAA+AGG | 0.467571 | 3.3:-83785292 | MS.gene013023:CDS |
| AAAACATGGACTCTCAGCTT+TGG | 0.469650 | 3.3:-83785301 | MS.gene013023:CDS |
| TGCATTTGCAAAGATGAGTC+TGG | 0.477055 | 3.3:+83785542 | None:intergenic |
| TCTCTTATTAGAAATAAGAA+TGG | 0.482752 | 3.3:+83784937 | None:intergenic |
| GATACTGAGAATAACTTGAA+TGG | 0.484768 | 3.3:+83786171 | None:intergenic |
| GTCAAACCTCCGGGAGAGAA+AGG | 0.487910 | 3.3:+83785132 | None:intergenic |
| CCTCGCCTCTCTGTCGCCAA+TGG | 0.491467 | 3.3:-83786057 | MS.gene013023:CDS |
| CTCTTATTAGAAATAAGAAT+GGG | 0.494945 | 3.3:+83784938 | None:intergenic |
| TTGTGAGTGAAACGTTGGTT+TGG | 0.497834 | 3.3:+83786251 | None:intergenic |
| AATATGGTGGACTCTCTTGA+AGG | 0.499593 | 3.3:-83785108 | MS.gene013023:CDS |
| GAATAAAGTACATAGAGAAT+CGG | 0.509178 | 3.3:+83785334 | None:intergenic |
| TCCTCTTTGCTGCTCATGAA+CGG | 0.518225 | 3.3:+83785426 | None:intergenic |
| GTTGATCGATGGATTTGAAA+CGG | 0.521172 | 3.3:+83786098 | None:intergenic |
| AGGAGTTATTCAACCAGGGT+TGG | 0.525626 | 3.3:-83785577 | MS.gene013023:CDS |
| TTCTGATTTCCAAGCCAAGT+TGG | 0.531191 | 3.3:-83785980 | MS.gene013023:CDS |
| ACCATATTTGTCAAACCTCC+GGG | 0.531907 | 3.3:+83785123 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.534728 | 3.3:-83786151 | MS.gene013023:CDS |
| TCAACTCAACTCCCTTCGGC+GGG | 0.535367 | 3.3:-83786080 | MS.gene013023:CDS |
| TTCATCCAAGTAAACGAAGA+AGG | 0.540994 | 3.3:-83785048 | MS.gene013023:CDS |
| TTGTTCAACCCACACACCAT+TGG | 0.548194 | 3.3:+83786041 | None:intergenic |
| TATCATCGCTGCTGGCTCTG+AGG | 0.548469 | 3.3:-83786152 | MS.gene013023:CDS |
| TTCCGTTGATTTCCAGAACA+AGG | 0.549589 | 3.3:-83785956 | MS.gene013023:intron |
| AGAGAGGCGAGGCCCGCCGA+AGG | 0.551697 | 3.3:+83786068 | None:intergenic |
| CTTTGTCTTCCTTATAAACA+GGG | 0.557682 | 3.3:-83785369 | MS.gene013023:CDS |
| TCGATCAACTCAACTCCCTT+CGG | 0.559738 | 3.3:-83786084 | MS.gene013023:CDS |
| ACAAAGTCTAGTCGAGGACG+AGG | 0.560984 | 3.3:+83784970 | None:intergenic |
| AGGTGCTCAATCCTCTTGCT+GGG | 0.561778 | 3.3:-83784882 | MS.gene013023:CDS |
| ATTCTTCCAGATGCAAAACA+TGG | 0.562696 | 3.3:-83785315 | MS.gene013023:CDS |
| GACCAATGAAGTCAATTCAT+GGG | 0.562924 | 3.3:-83785628 | MS.gene013023:CDS |
| AAGGGAGTTGAGTTGATCGA+TGG | 0.564568 | 3.3:+83786087 | None:intergenic |
| TATGCTATTGTGAGAGGCAA+GGG | 0.564855 | 3.3:-83785003 | MS.gene013023:CDS |
| TGAAACTTCTGATATGCTGA+AGG | 0.568879 | 3.3:-83785172 | MS.gene013023:CDS |
| GAGAGGCGAGGCCCGCCGAA+GGG | 0.571403 | 3.3:+83786069 | None:intergenic |
| GTTAAGTTGTTGACCAACCC+TGG | 0.572779 | 3.3:+83785564 | None:intergenic |
| AGAAAGGTAAAACCACTCCT+AGG | 0.573426 | 3.3:+83785148 | None:intergenic |
| ATTCTCAGTATCATCGCTGC+TGG | 0.573481 | 3.3:-83786160 | MS.gene013023:CDS |
| CCAAATGAGACATTGAACCT+TGG | 0.576402 | 3.3:+83785198 | None:intergenic |
| CTATGCTATTGTGAGAGGCA+AGG | 0.580929 | 3.3:-83785004 | MS.gene013023:CDS |
| ATTAAAGGAGTTATTCAACC+AGG | 0.584761 | 3.3:-83785582 | MS.gene013023:CDS |
| AGCGATTGTGAGTGAAACGT+TGG | 0.585010 | 3.3:+83786246 | None:intergenic |
| TCTGATATGCTGAAGGACCT+AGG | 0.594866 | 3.3:-83785165 | MS.gene013023:CDS |
| TAGTATGATTACCCAGCAAG+AGG | 0.598459 | 3.3:+83784871 | None:intergenic |
| ATCAACTCAACTCCCTTCGG+CGG | 0.601233 | 3.3:-83786081 | MS.gene013023:CDS |
| CGGAGGTTTGACAAATATGG+TGG | 0.603716 | 3.3:-83785121 | MS.gene013023:CDS |
| TCCAACAAAGAGGATTGTGC+CGG | 0.609638 | 3.3:+83784906 | None:intergenic |
| CTTGCCTCTCACAATAGCAT+AGG | 0.612056 | 3.3:+83785005 | None:intergenic |
| AATAGCATAGGTTGCAGCAG+CGG | 0.614189 | 3.3:+83785017 | None:intergenic |
| TTAAAGGAGTTATTCAACCA+GGG | 0.622511 | 3.3:-83785581 | MS.gene013023:CDS |
| TACCTTGTTCTGGAAATCAA+CGG | 0.624465 | 3.3:+83785954 | None:intergenic |
| TCTCAATCGTAGCTCACTCA+AGG | 0.625100 | 3.3:-83785451 | MS.gene013023:CDS |
| AGTCTAGTCGAGGACGAGGA+GGG | 0.627803 | 3.3:+83784974 | None:intergenic |
| AAGTCTAGTCGAGGACGAGG+AGG | 0.638727 | 3.3:+83784973 | None:intergenic |
| GCAACCTATGCTATTGTGAG+AGG | 0.638794 | 3.3:-83785009 | MS.gene013023:CDS |
| TGAGCACCTGTCCAACAAAG+AGG | 0.641694 | 3.3:+83784896 | None:intergenic |
| GGTTGATCATCGATTTACGA+CGG | 0.648349 | 3.3:+83786272 | None:intergenic |
| TCCGTTCATGAGCAGCAAAG+AGG | 0.648841 | 3.3:-83785427 | MS.gene013023:CDS |
| TAAAGTACATAGAGAATCGG+CGG | 0.649019 | 3.3:+83785337 | None:intergenic |
| AGAATAACTTGAATGGAGAG+AGG | 0.658718 | 3.3:+83786178 | None:intergenic |
| TAGGTGACTTCAGAATTCCA+AGG | 0.662092 | 3.3:-83785215 | MS.gene013023:CDS |
| TTATTAGAAATAAGAATGGG+TGG | 0.662615 | 3.3:+83784941 | None:intergenic |
| TGAGTGAGCTACGATTGAGA+AGG | 0.665831 | 3.3:+83785454 | None:intergenic |
| ACACACCATTGGCGACAGAG+AGG | 0.687034 | 3.3:+83786052 | None:intergenic |
| TCAGCTACAAAGTCTAGTCG+AGG | 0.689387 | 3.3:+83784964 | None:intergenic |
| TATGCTGAAGGACCTAGGAG+TGG | 0.695951 | 3.3:-83785160 | MS.gene013023:CDS |
| GATCGATGGATTTGAAACGG+AGG | 0.718521 | 3.3:+83786101 | None:intergenic |
| CCATTGGCGACAGAGAGGCG+AGG | 0.720718 | 3.3:+83786057 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATAATTAGAAACAATT+CGG | + | chr3.3:83785331-83785350 | None:intergenic | 15.0% |
| !!! | GAAATTTGATATGAATTTTT+AGG | - | chr3.3:83785498-83785517 | MS.gene013023:CDS | 15.0% |
| !! | ATGTTGCTAATTAAATTAGT+TGG | + | chr3.3:83785421-83785440 | None:intergenic | 20.0% |
| !! | CTCTTATTAGAAATAAGAAT+GGG | + | chr3.3:83786224-83786243 | None:intergenic | 20.0% |
| !! | TCAATAATTAGAAACAATTC+GGG | + | chr3.3:83785330-83785349 | None:intergenic | 20.0% |
| !! | TCTCTTATTAGAAATAAGAA+TGG | + | chr3.3:83786225-83786244 | None:intergenic | 20.0% |
| !! | TTGGATGTTAAAAAACAATA+AGG | + | chr3.3:83785402-83785421 | None:intergenic | 20.0% |
| !!! | AAAATCATAGTCTTTAGTTT+TGG | + | chr3.3:83785683-83785702 | None:intergenic | 20.0% |
| ! | CTTGAGAAAGATTAAACTTA+TGG | + | chr3.3:83785918-83785937 | None:intergenic | 25.0% |
| ! | GAATAAAGTACATAGAGAAT+CGG | + | chr3.3:83785828-83785847 | None:intergenic | 25.0% |
| ! | TTATTAGAAATAAGAATGGG+TGG | + | chr3.3:83786221-83786240 | None:intergenic | 25.0% |
| ! | TTTCGTTTCGTATCAAATTA+GGG | - | chr3.3:83785287-83785306 | MS.gene013023:CDS | 25.0% |
| !! | AAGGTATGTAATGTGTTTTA+GGG | - | chr3.3:83785222-83785241 | MS.gene013023:CDS | 25.0% |
| !! | AATCAGAAGAAAGAATCTTT+TGG | + | chr3.3:83785167-83785186 | None:intergenic | 25.0% |
| !! | CTAATAAGAGAAGATTTTAC+CGG | - | chr3.3:83786234-83786253 | MS.gene013023:CDS | 25.0% |
| AAACAATTCGGGAATGTTAT+TGG | + | chr3.3:83785319-83785338 | None:intergenic | 30.0% | |
| AACGAAACAATAAGCTAACA+TGG | + | chr3.3:83785274-83785293 | None:intergenic | 30.0% | |
| AATCTTTCTCAAGTCAAAGT+AGG | - | chr3.3:83785925-83785944 | MS.gene013023:intron | 30.0% | |
| ACTTTGTCTTCCTTATAAAC+AGG | - | chr3.3:83785789-83785808 | MS.gene013023:intron | 30.0% | |
| AGCAAAGAGGATCAATATAT+TGG | - | chr3.3:83785745-83785764 | MS.gene013023:intron | 30.0% | |
| ATTAAAGGAGTTATTCAACC+AGG | - | chr3.3:83785577-83785596 | MS.gene013023:CDS | 30.0% | |
| ATTCCTAAAGTAAGCAATTG+AGG | + | chr3.3:83785251-83785270 | None:intergenic | 30.0% | |
| CTTTGTCTTCCTTATAAACA+GGG | - | chr3.3:83785790-83785809 | MS.gene013023:intron | 30.0% | |
| GATACTGAGAATAACTTGAA+TGG | + | chr3.3:83784991-83785010 | None:intergenic | 30.0% | |
| GTTTCGTTTCGTATCAAATT+AGG | - | chr3.3:83785286-83785305 | MS.gene013023:CDS | 30.0% | |
| TTAAAGGAGTTATTCAACCA+GGG | - | chr3.3:83785578-83785597 | MS.gene013023:CDS | 30.0% | |
| TTTCCTCAATTGCTTACTTT+AGG | - | chr3.3:83785245-83785264 | MS.gene013023:CDS | 30.0% | |
| ! | AGAAGAAAGAATCTTTTGGA+AGG | + | chr3.3:83785163-83785182 | None:intergenic | 30.0% |
| ! | CAAGGTATGTAATGTGTTTT+AGG | - | chr3.3:83785221-83785240 | MS.gene013023:CDS | 30.0% |
| ! | GAGACAAATGGACTTATTAA+AGG | - | chr3.3:83785562-83785581 | MS.gene013023:CDS | 30.0% |
| ! | TTACTTGGATGAAAGACTTT+TGG | + | chr3.3:83786104-83786123 | None:intergenic | 30.0% |
| !! | CAATATATTGGTGCTTTTGA+TGG | - | chr3.3:83785757-83785776 | MS.gene013023:intron | 30.0% |
| !!! | GAAAGACTTTTGGAATATCT+TGG | + | chr3.3:83786094-83786113 | None:intergenic | 30.0% |
| AATTCGGGAATGTTATTGGT+AGG | + | chr3.3:83785315-83785334 | None:intergenic | 35.0% | |
| ACACATTACATACCTTGTTC+TGG | + | chr3.3:83785218-83785237 | None:intergenic | 35.0% | |
| AGAATAACTTGAATGGAGAG+AGG | + | chr3.3:83784984-83785003 | None:intergenic | 35.0% | |
| ATTCTTCCAGATGCAAAACA+TGG | - | chr3.3:83785844-83785863 | MS.gene013023:intron | 35.0% | |
| CAAGGTTCAATGTCTCATTT+GGG | - | chr3.3:83785962-83785981 | MS.gene013023:CDS | 35.0% | |
| GACCAATGAAGTCAATTCAT+GGG | - | chr3.3:83785531-83785550 | MS.gene013023:CDS | 35.0% | |
| GCAAATGCACTGTACTTTAA+AGG | - | chr3.3:83785631-83785650 | MS.gene013023:CDS | 35.0% | |
| TAAAGTACATAGAGAATCGG+CGG | + | chr3.3:83785825-83785844 | None:intergenic | 35.0% | |
| TGAAACTTCTGATATGCTGA+AGG | - | chr3.3:83785987-83786006 | MS.gene013023:CDS | 35.0% | |
| TGACCAATGAAGTCAATTCA+TGG | - | chr3.3:83785530-83785549 | MS.gene013023:CDS | 35.0% | |
| TTCATCCAAGTAAACGAAGA+AGG | - | chr3.3:83786111-83786130 | MS.gene013023:CDS | 35.0% | |
| ! | AACCCATGAATTGACTTCAT+TGG | + | chr3.3:83785536-83785555 | None:intergenic | 35.0% |
| ! | CACTGTACTTTAAAGGACTA+TGG | - | chr3.3:83785638-83785657 | MS.gene013023:CDS | 35.0% |
| ! | GTTGATCGATGGATTTGAAA+CGG | + | chr3.3:83785064-83785083 | None:intergenic | 35.0% |
| ! | TGGGTTGAAAAAGAGACAAA+TGG | - | chr3.3:83785550-83785569 | MS.gene013023:CDS | 35.0% |
| !! | TACCTTGTTCTGGAAATCAA+CGG | + | chr3.3:83785208-83785227 | None:intergenic | 35.0% |
| AAAACATGGACTCTCAGCTT+TGG | - | chr3.3:83785858-83785877 | MS.gene013023:intron | 40.0% | |
| ACCATATTTGTCAAACCTCC+GGG | + | chr3.3:83786039-83786058 | None:intergenic | 40.0% | |
| AGAAAGGTAAAACCACTCCT+AGG | + | chr3.3:83786014-83786033 | None:intergenic | 40.0% | |
| CACCATATTTGTCAAACCTC+CGG | + | chr3.3:83786040-83786059 | None:intergenic | 40.0% | |
| CCAAATGAGACATTGAACCT+TGG | + | chr3.3:83785964-83785983 | None:intergenic | 40.0% | |
| CCAAGGTTCAATGTCTCATT+TGG | - | chr3.3:83785961-83785980 | MS.gene013023:CDS | 40.0% | |
| CGAAAACACGATGTTGTTGT+TGG | + | chr3.3:83784961-83784980 | None:intergenic | 40.0% | |
| TAGGTGACTTCAGAATTCCA+AGG | - | chr3.3:83785944-83785963 | MS.gene013023:intron | 40.0% | |
| TATGCTATTGTGAGAGGCAA+GGG | - | chr3.3:83786156-83786175 | MS.gene013023:CDS | 40.0% | |
| TCATCTTGGCCCTGTTTATA+AGG | + | chr3.3:83785802-83785821 | None:intergenic | 40.0% | |
| TGCATTTGCAAAGATGAGTC+TGG | + | chr3.3:83785620-83785639 | None:intergenic | 40.0% | |
| TTCTGATTTCCAAGCCAAGT+TGG | - | chr3.3:83785179-83785198 | MS.gene013023:CDS | 40.0% | |
| ! | ACTCTCAGCTTTGGTTGAAA+AGG | - | chr3.3:83785867-83785886 | MS.gene013023:intron | 40.0% |
| ! | TTGTGAGTGAAACGTTGGTT+TGG | + | chr3.3:83784911-83784930 | None:intergenic | 40.0% |
| !! | AATATGGTGGACTCTCTTGA+AGG | - | chr3.3:83786051-83786070 | MS.gene013023:intron | 40.0% |
| !! | GGTTGATCATCGATTTACGA+CGG | + | chr3.3:83784890-83784909 | None:intergenic | 40.0% |
| !! | TTCCGTTGATTTCCAGAACA+AGG | - | chr3.3:83785203-83785222 | MS.gene013023:CDS | 40.0% |
| AATAGCATAGGTTGCAGCAG+CGG | + | chr3.3:83786145-83786164 | None:intergenic | 45.0% | |
| AGCGATTGTGAGTGAAACGT+TGG | + | chr3.3:83784916-83784935 | None:intergenic | 45.0% | |
| AGGAGTTATTCAACCAGGGT+TGG | - | chr3.3:83785582-83785601 | MS.gene013023:CDS | 45.0% | |
| ATTCTCAGTATCATCGCTGC+TGG | - | chr3.3:83784999-83785018 | MS.gene013023:CDS | 45.0% | |
| CACAATCCTCTTTGTTGGAC+AGG | - | chr3.3:83786257-83786276 | MS.gene013023:CDS | 45.0% | |
| CAGTGCCTTCTTCGTTTACT+TGG | + | chr3.3:83786119-83786138 | None:intergenic | 45.0% | |
| CGGAGGTTTGACAAATATGG+TGG | - | chr3.3:83786038-83786057 | MS.gene013023:intron | 45.0% | |
| CTATGCTATTGTGAGAGGCA+AGG | - | chr3.3:83786155-83786174 | MS.gene013023:CDS | 45.0% | |
| CTTGCCTCTCACAATAGCAT+AGG | + | chr3.3:83786157-83786176 | None:intergenic | 45.0% | |
| GAAATCAACGGAAGCCAACT+TGG | + | chr3.3:83785196-83785215 | None:intergenic | 45.0% | |
| GCAACCTATGCTATTGTGAG+AGG | - | chr3.3:83786150-83786169 | MS.gene013023:CDS | 45.0% | |
| TCAGCTACAAAGTCTAGTCG+AGG | + | chr3.3:83786198-83786217 | None:intergenic | 45.0% | |
| TCCAACAAAGAGGATTGTGC+CGG | + | chr3.3:83786256-83786275 | None:intergenic | 45.0% | |
| TCCCGGAGGTTTGACAAATA+TGG | - | chr3.3:83786035-83786054 | MS.gene013023:intron | 45.0% | |
| TCCTCTTTGCTGCTCATGAA+CGG | + | chr3.3:83785736-83785755 | None:intergenic | 45.0% | |
| TCGATCAACTCAACTCCCTT+CGG | - | chr3.3:83785075-83785094 | MS.gene013023:CDS | 45.0% | |
| TCTCAATCGTAGCTCACTCA+AGG | - | chr3.3:83785708-83785727 | MS.gene013023:intron | 45.0% | |
| TCTGATATGCTGAAGGACCT+AGG | - | chr3.3:83785994-83786013 | MS.gene013023:intron | 45.0% | |
| TGAGTGAGCTACGATTGAGA+AGG | + | chr3.3:83785708-83785727 | None:intergenic | 45.0% | |
| TTGTTCAACCCACACACCAT+TGG | + | chr3.3:83785121-83785140 | None:intergenic | 45.0% | |
| ! | CTCAGCTTTGGTTGAAAAGG+TGG | - | chr3.3:83785870-83785889 | MS.gene013023:intron | 45.0% |
| ! | GAGAGTCCATGTTTTGCATC+TGG | + | chr3.3:83785853-83785872 | None:intergenic | 45.0% |
| ! | GATCGATGGATTTGAAACGG+AGG | + | chr3.3:83785061-83785080 | None:intergenic | 45.0% |
| ! | GTTAAGTTGTTGACCAACCC+TGG | + | chr3.3:83785598-83785617 | None:intergenic | 45.0% |
| !! | AAGGGAGTTGAGTTGATCGA+TGG | + | chr3.3:83785075-83785094 | None:intergenic | 45.0% |
| !! | GTCGAGAAGTTGTTGCTTTG+TGG | + | chr3.3:83785036-83785055 | None:intergenic | 45.0% |
| !! | GTGGTTTTACCTTTCTCTCC+CGG | - | chr3.3:83786018-83786037 | MS.gene013023:intron | 45.0% |
| ACAAAGTCTAGTCGAGGACG+AGG | + | chr3.3:83786192-83786211 | None:intergenic | 50.0% | |
| ACCGGCACAATCCTCTTTGT+TGG | - | chr3.3:83786252-83786271 | MS.gene013023:CDS | 50.0% | |
| AGGTGCTCAATCCTCTTGCT+GGG | - | chr3.3:83786277-83786296 | MS.gene013023:CDS | 50.0% | |
| ATCAACTCAACTCCCTTCGG+CGG | - | chr3.3:83785078-83785097 | MS.gene013023:CDS | 50.0% | |
| TAGAGAATCGGCGGTCATCT+TGG | + | chr3.3:83785816-83785835 | None:intergenic | 50.0% | |
| TATGCTGAAGGACCTAGGAG+TGG | - | chr3.3:83785999-83786018 | MS.gene013023:intron | 50.0% | |
| TCCGTTCATGAGCAGCAAAG+AGG | - | chr3.3:83785732-83785751 | MS.gene013023:intron | 50.0% | |
| TGAGCACCTGTCCAACAAAG+AGG | + | chr3.3:83786266-83786285 | None:intergenic | 50.0% | |
| ! | GTTTTACCTTTCTCTCCCGG+AGG | - | chr3.3:83786021-83786040 | MS.gene013023:intron | 50.0% |
| AAGTCTAGTCGAGGACGAGG+AGG | + | chr3.3:83786189-83786208 | None:intergenic | 55.0% | |
| ACACACCATTGGCGACAGAG+AGG | + | chr3.3:83785110-83785129 | None:intergenic | 55.0% | |
| AGTCTAGTCGAGGACGAGGA+GGG | + | chr3.3:83786188-83786207 | None:intergenic | 55.0% | |
| CAACGGAAGCCAACTTGGCT+TGG | + | chr3.3:83785191-83785210 | None:intergenic | 55.0% | |
| CAGGTGCTCAATCCTCTTGC+TGG | - | chr3.3:83786276-83786295 | MS.gene013023:CDS | 55.0% | |
| CTCTGTCGCCAATGGTGTGT+GGG | - | chr3.3:83785110-83785129 | MS.gene013023:CDS | 55.0% | |
| GTCAAACCTCCGGGAGAGAA+AGG | + | chr3.3:83786030-83786049 | None:intergenic | 55.0% | |
| TCAACTCAACTCCCTTCGGC+GGG | - | chr3.3:83785079-83785098 | MS.gene013023:CDS | 55.0% | |
| TCTCTGTCGCCAATGGTGTG+TGG | - | chr3.3:83785109-83785128 | MS.gene013023:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | - | chr3.3:83785008-83785027 | MS.gene013023:CDS | 55.0% |
| !! | TATCATCGCTGCTGGCTCTG+AGG | - | chr3.3:83785007-83785026 | MS.gene013023:CDS | 55.0% |
| CCATTGGCGACAGAGAGGCG+AGG | + | chr3.3:83785105-83785124 | None:intergenic | 65.0% | |
| CCTCGCCTCTCTGTCGCCAA+TGG | - | chr3.3:83785102-83785121 | MS.gene013023:CDS | 65.0% | |
| AGAGAGGCGAGGCCCGCCGA+AGG | + | chr3.3:83785094-83785113 | None:intergenic | 75.0% | |
| GAGAGGCGAGGCCCGCCGAA+GGG | + | chr3.3:83785093-83785112 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83784879 | 83786302 | 83784879 | ID=MS.gene013023 |
| chr3.3 | mRNA | 83784879 | 83786302 | 83784879 | ID=MS.gene013023.t1;Parent=MS.gene013023 |
| chr3.3 | exon | 83786054 | 83786302 | 83786054 | ID=MS.gene013023.t1.exon1;Parent=MS.gene013023.t1 |
| chr3.3 | CDS | 83786054 | 83786302 | 83786054 | ID=cds.MS.gene013023.t1;Parent=MS.gene013023.t1 |
| chr3.3 | exon | 83785957 | 83786010 | 83785957 | ID=MS.gene013023.t1.exon2;Parent=MS.gene013023.t1 |
| chr3.3 | CDS | 83785957 | 83786010 | 83785957 | ID=cds.MS.gene013023.t1;Parent=MS.gene013023.t1 |
| chr3.3 | exon | 83784879 | 83785661 | 83784879 | ID=MS.gene013023.t1.exon3;Parent=MS.gene013023.t1 |
| chr3.3 | CDS | 83784879 | 83785661 | 83784879 | ID=cds.MS.gene013023.t1;Parent=MS.gene013023.t1 |
| Gene Sequence |
| Protein sequence |
