Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013025.t1 | XP_013455531.1 | 72.5 | 374 | 83 | 3 | 1 | 357 | 18 | 388 | 7.80E-145 | 523.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013025.t1 | Q9S7T8 | 50.7 | 375 | 164 | 5 | 1 | 355 | 17 | 390 | 4.7e-98 | 359.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013025.t1 | A0A072UIQ8 | 72.5 | 374 | 83 | 3 | 1 | 357 | 18 | 388 | 5.7e-145 | 523.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene013025 | PPI |
| MS.gene045585 | MS.gene013025 | PPI |
| MS.gene065945 | MS.gene013025 | PPI |
| MS.gene031697 | MS.gene013025 | PPI |
| MS.gene065944 | MS.gene013025 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013025.t1 | MTR_4g045707 | 72.460 | 374 | 83 | 3 | 1 | 357 | 18 | 388 | 0.0 | 531 |
| MS.gene013025.t1 | MTR_3g101010 | 67.380 | 374 | 104 | 2 | 1 | 357 | 17 | 389 | 3.85e-170 | 479 |
| MS.gene013025.t1 | MTR_3g101030 | 63.868 | 393 | 102 | 6 | 1 | 357 | 41 | 429 | 2.37e-168 | 476 |
| MS.gene013025.t1 | MTR_8g027395 | 63.130 | 377 | 111 | 4 | 1 | 357 | 29 | 397 | 1.12e-164 | 466 |
| MS.gene013025.t1 | MTR_3g018740 | 64.611 | 373 | 111 | 4 | 1 | 355 | 17 | 386 | 2.84e-164 | 464 |
| MS.gene013025.t1 | MTR_3g048000 | 62.735 | 373 | 102 | 3 | 1 | 356 | 39 | 391 | 6.80e-164 | 464 |
| MS.gene013025.t1 | MTR_2g046030 | 61.436 | 376 | 118 | 5 | 1 | 355 | 17 | 386 | 3.73e-155 | 441 |
| MS.gene013025.t1 | MTR_2g045980 | 61.436 | 376 | 118 | 6 | 1 | 355 | 17 | 386 | 1.68e-152 | 434 |
| MS.gene013025.t1 | MTR_8g461160 | 61.008 | 377 | 123 | 5 | 1 | 355 | 18 | 392 | 3.65e-151 | 431 |
| MS.gene013025.t1 | MTR_8g027420 | 59.682 | 377 | 113 | 5 | 1 | 357 | 18 | 375 | 5.76e-151 | 430 |
| MS.gene013025.t1 | MTR_7g451890 | 59.259 | 378 | 132 | 4 | 1 | 357 | 26 | 402 | 3.18e-150 | 429 |
| MS.gene013025.t1 | MTR_4g088525 | 59.290 | 366 | 127 | 4 | 8 | 356 | 8 | 368 | 1.73e-147 | 421 |
| MS.gene013025.t1 | MTR_3g101180 | 58.594 | 384 | 129 | 7 | 1 | 356 | 18 | 399 | 3.21e-147 | 422 |
| MS.gene013025.t1 | MTR_7g050750 | 58.995 | 378 | 133 | 5 | 1 | 357 | 20 | 396 | 2.71e-146 | 419 |
| MS.gene013025.t1 | MTR_7g047780 | 58.158 | 380 | 133 | 6 | 1 | 357 | 26 | 402 | 3.76e-146 | 419 |
| MS.gene013025.t1 | MTR_3g101130 | 59.788 | 378 | 125 | 6 | 1 | 357 | 18 | 389 | 6.60e-145 | 415 |
| MS.gene013025.t1 | MTR_7g050810 | 58.947 | 380 | 130 | 6 | 1 | 357 | 28 | 404 | 8.00e-145 | 416 |
| MS.gene013025.t1 | MTR_4g088535 | 56.649 | 376 | 119 | 5 | 1 | 356 | 19 | 370 | 2.82e-138 | 398 |
| MS.gene013025.t1 | MTR_3g101050 | 59.280 | 361 | 136 | 7 | 1 | 355 | 41 | 396 | 1.93e-133 | 386 |
| MS.gene013025.t1 | MTR_3g102920 | 60.165 | 364 | 113 | 7 | 1 | 356 | 70 | 409 | 3.98e-132 | 384 |
| MS.gene013025.t1 | MTR_3g015620 | 53.457 | 376 | 129 | 6 | 1 | 355 | 28 | 378 | 1.19e-119 | 351 |
| MS.gene013025.t1 | MTR_3g101200 | 54.795 | 365 | 116 | 8 | 13 | 356 | 55 | 391 | 8.34e-118 | 347 |
| MS.gene013025.t1 | MTR_3g100995 | 68.313 | 243 | 73 | 3 | 115 | 357 | 26 | 264 | 5.60e-115 | 335 |
| MS.gene013025.t1 | MTR_3g101190 | 47.684 | 367 | 111 | 6 | 8 | 357 | 10 | 312 | 2.02e-104 | 310 |
| MS.gene013025.t1 | MTR_3g018747 | 65.041 | 246 | 69 | 4 | 111 | 355 | 24 | 253 | 2.16e-101 | 300 |
| MS.gene013025.t1 | MTR_7g050830 | 51.316 | 304 | 97 | 4 | 1 | 265 | 28 | 319 | 5.22e-97 | 291 |
| MS.gene013025.t1 | MTR_3g100010 | 50.160 | 313 | 90 | 4 | 14 | 276 | 42 | 338 | 1.65e-94 | 285 |
| MS.gene013025.t1 | MTR_3g100520 | 62.613 | 222 | 69 | 2 | 137 | 357 | 1 | 209 | 4.12e-92 | 274 |
| MS.gene013025.t1 | MTR_3g111160 | 65.919 | 223 | 71 | 5 | 137 | 357 | 1 | 220 | 8.42e-89 | 266 |
| MS.gene013025.t1 | MTR_3g015760 | 60.324 | 247 | 91 | 5 | 111 | 355 | 38 | 279 | 3.38e-88 | 267 |
| MS.gene013025.t1 | MTR_2g046410 | 65.700 | 207 | 64 | 3 | 153 | 355 | 144 | 347 | 5.54e-87 | 266 |
| MS.gene013025.t1 | MTR_3g099970 | 69.663 | 178 | 36 | 3 | 115 | 292 | 39 | 198 | 2.23e-78 | 239 |
| MS.gene013025.t1 | MTR_3g114310 | 38.083 | 386 | 202 | 12 | 2 | 357 | 32 | 410 | 1.68e-70 | 226 |
| MS.gene013025.t1 | MTR_3g101110 | 50.000 | 260 | 95 | 7 | 83 | 335 | 53 | 284 | 2.02e-69 | 219 |
| MS.gene013025.t1 | MTR_3g101020 | 57.979 | 188 | 51 | 3 | 170 | 357 | 1 | 160 | 3.37e-63 | 199 |
| MS.gene013025.t1 | MTR_3g101150 | 64.780 | 159 | 51 | 2 | 202 | 356 | 1 | 158 | 1.88e-61 | 194 |
| MS.gene013025.t1 | MTR_3g102870 | 59.375 | 160 | 59 | 2 | 159 | 313 | 1 | 159 | 8.50e-56 | 180 |
| MS.gene013025.t1 | MTR_3g100990 | 57.353 | 136 | 54 | 1 | 1 | 132 | 17 | 152 | 1.16e-44 | 160 |
| MS.gene013025.t1 | MTR_3g111150 | 50.299 | 167 | 42 | 3 | 1 | 150 | 11 | 153 | 1.70e-44 | 151 |
| MS.gene013025.t1 | MTR_4g093550 | 61.111 | 72 | 28 | 0 | 1 | 72 | 18 | 89 | 3.47e-23 | 92.8 |
| MS.gene013025.t1 | MTR_6g046890 | 62.162 | 74 | 23 | 2 | 8 | 80 | 18 | 87 | 1.23e-20 | 87.0 |
| MS.gene013025.t1 | MTR_3g101140 | 44.882 | 127 | 52 | 5 | 233 | 357 | 6 | 116 | 8.57e-17 | 75.9 |
| MS.gene013025.t1 | MTR_3g101080 | 91.892 | 37 | 1 | 1 | 311 | 347 | 5 | 39 | 3.40e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013025.t1 | AT1G47710 | 50.667 | 375 | 164 | 5 | 1 | 355 | 17 | 390 | 1.69e-123 | 361 |
| MS.gene013025.t1 | AT1G47710 | 50.667 | 375 | 164 | 5 | 1 | 355 | 44 | 417 | 8.87e-123 | 360 |
| MS.gene013025.t1 | AT2G25240 | 46.579 | 380 | 163 | 11 | 1 | 354 | 17 | 382 | 7.04e-103 | 308 |
| MS.gene013025.t1 | AT3G45220 | 44.444 | 387 | 169 | 9 | 1 | 354 | 17 | 390 | 1.24e-100 | 303 |
| MS.gene013025.t1 | AT2G26390 | 46.277 | 376 | 150 | 11 | 12 | 354 | 30 | 386 | 1.91e-99 | 300 |
| MS.gene013025.t1 | AT1G64030 | 41.019 | 373 | 174 | 7 | 5 | 354 | 22 | 371 | 2.91e-85 | 263 |
| MS.gene013025.t1 | AT2G14540 | 43.288 | 365 | 163 | 7 | 11 | 354 | 56 | 397 | 1.38e-82 | 257 |
| MS.gene013025.t1 | AT1G62170 | 39.785 | 372 | 167 | 7 | 11 | 354 | 89 | 431 | 1.72e-82 | 258 |
| MS.gene013025.t1 | AT1G62170 | 36.543 | 405 | 167 | 7 | 11 | 354 | 89 | 464 | 7.87e-77 | 244 |
| MS.gene013025.t1 | AT2G35580 | 41.067 | 375 | 165 | 11 | 10 | 354 | 23 | 371 | 1.04e-74 | 236 |
| MS.gene013025.t1 | AT1G64010 | 49.091 | 220 | 85 | 7 | 137 | 354 | 1 | 195 | 1.57e-59 | 191 |
| MS.gene013025.t1 | AT1G64010 | 48.780 | 205 | 78 | 7 | 152 | 354 | 2 | 181 | 8.37e-53 | 173 |
| MS.gene013025.t1 | AT1G62160 | 37.864 | 206 | 89 | 8 | 159 | 354 | 42 | 218 | 2.34e-30 | 115 |
| MS.gene013025.t1 | AT1G63280 | 55.208 | 96 | 39 | 2 | 115 | 208 | 27 | 120 | 8.53e-27 | 103 |
| MS.gene013025.t1 | AT1G51330 | 47.253 | 91 | 45 | 2 | 115 | 202 | 50 | 140 | 7.75e-19 | 84.0 |
| MS.gene013025.t1 | AT1G64020 | 37.963 | 108 | 60 | 4 | 1 | 104 | 17 | 121 | 7.47e-13 | 65.1 |
Find 87 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGACTTGTGAAATATTT+TGG | 0.124070 | 3.3:+83776483 | None:intergenic |
| CCAAGGTTCAATGTTTCATT+TGG | 0.241843 | 3.3:-83776613 | MS.gene013025:CDS |
| TCATCTTGGCCTAGTTTATA+AGG | 0.304109 | 3.3:+83776778 | None:intergenic |
| CTCAGCTTTGGTTGAGAAGA+TGG | 0.323053 | 3.3:-83776707 | MS.gene013025:CDS |
| CTCTCCATTCAGATTATTCT+CGG | 0.356709 | 3.3:-83777878 | MS.gene013025:CDS |
| TCTGATATGCTGAAGGAGTT+AGG | 0.356782 | 3.3:-83776580 | MS.gene013025:CDS |
| AATAGAAACATACCTTGTTC+TGG | 0.356984 | 3.3:+83777603 | None:intergenic |
| CAAGGTTCAATGTTTCATTT+GGG | 0.365934 | 3.3:-83776612 | MS.gene013025:CDS |
| TATTTCTAATTAAAGAAGAT+TGG | 0.368668 | 3.3:-83776345 | MS.gene013025:CDS |
| CAGGTGCTCAATCCTCTTGT+TGG | 0.385208 | 3.3:-83776298 | MS.gene013025:CDS |
| ATCTGTTTACAAAGCAAACT+TGG | 0.389811 | 3.3:-83777639 | MS.gene013025:CDS |
| ACCAGAACAATCCTCTTTGT+TGG | 0.394581 | 3.3:-83776322 | MS.gene013025:CDS |
| CCCTGTACTTCAAAGGAGTA+TGG | 0.410732 | 3.3:-83776939 | MS.gene013025:CDS |
| CTTCAACTTCCTTATAAACT+AGG | 0.412556 | 3.3:-83776787 | MS.gene013025:CDS |
| GTTGAGATGATGGATGGATT+TGG | 0.412956 | 3.3:+83777796 | None:intergenic |
| AATATATTGATCCTTCTTGC+TGG | 0.415812 | 3.3:+83776834 | None:intergenic |
| GAGAGTCCATCTTTCGCATC+TGG | 0.420255 | 3.3:+83776727 | None:intergenic |
| CGAGGCCCGCCCGTGAGATA+AGG | 0.421960 | 3.3:+83777734 | None:intergenic |
| AACAATCCTCTTTGTTGGAC+AGG | 0.428387 | 3.3:-83776317 | MS.gene013025:CDS |
| TGAAAACACAATGTTGTTGT+TGG | 0.432272 | 3.3:+83777904 | None:intergenic |
| TCCAACAAAGAGGATTGTTC+TGG | 0.441219 | 3.3:+83776321 | None:intergenic |
| TTTATTTCTGAAGTTAAAGT+AGG | 0.449528 | 3.3:-83776649 | MS.gene013025:CDS |
| TTGTTTAGAGAAGAGATGTT+TGG | 0.451351 | 3.3:+83777928 | None:intergenic |
| ATCATCGCTGCCGGCTCTGA+GGG | 0.452478 | 3.3:-83777854 | MS.gene013025:CDS |
| ACCATACTCCTTTGAAGTAC+AGG | 0.454003 | 3.3:+83776938 | None:intergenic |
| ATTCTTCCAGATGCGAAAGA+TGG | 0.456862 | 3.3:-83776733 | MS.gene013025:CDS |
| GAGGCCCGCCCGTGAGATAA+GGG | 0.458509 | 3.3:+83777735 | None:intergenic |
| CATCATCGCTGCCGGCTCTG+AGG | 0.469500 | 3.3:-83777855 | MS.gene013025:CDS |
| GAAAGATGGACTCTCAGCTT+TGG | 0.472292 | 3.3:-83776719 | MS.gene013025:CDS |
| GTCAGACCTCCGGGAGAGAA+AGG | 0.477684 | 3.3:+83776547 | None:intergenic |
| AGGTGCTCAATCCTCTTGTT+GGG | 0.479052 | 3.3:-83776297 | MS.gene013025:CDS |
| TAGAGAATCGACGGTCATCT+TGG | 0.487931 | 3.3:+83776764 | None:intergenic |
| TCTTTAATTAGAAATAAGAA+TGG | 0.489113 | 3.3:+83776352 | None:intergenic |
| TTCGCAAAAGGCATAGGTTA+CGG | 0.490809 | 3.3:+83776426 | None:intergenic |
| TCTCAATGGCAGCTCAATCA+AGG | 0.494273 | 3.3:-83776869 | MS.gene013025:CDS |
| CTTTAATTAGAAATAAGAAT+GGG | 0.499662 | 3.3:+83776353 | None:intergenic |
| AGATGACAGAATTTGTTTGA+AGG | 0.503106 | 3.3:+83777658 | None:intergenic |
| GACAGAATTTGTTTGAAGGT+AGG | 0.503242 | 3.3:+83777662 | None:intergenic |
| GTTAAGCTGTTGACCGCCCC+TGG | 0.506916 | 3.3:+83776982 | None:intergenic |
| TGAAATTTCTGATATGCTGA+AGG | 0.510968 | 3.3:-83776587 | MS.gene013025:CDS |
| GTCAAGAATCTGTTGTTGAG+TGG | 0.511736 | 3.3:+83777829 | None:intergenic |
| TTCATCAAAGTGAATGAAGA+AGG | 0.516015 | 3.3:-83776463 | MS.gene013025:CDS |
| TTGAGTGGGACCCTCAGAGC+CGG | 0.516962 | 3.3:+83777844 | None:intergenic |
| CAATATATTCGTGCTTTCGA+TGG | 0.517796 | 3.3:-83776820 | MS.gene013025:CDS |
| TCCTTTCATGACCAGCAAGA+AGG | 0.520615 | 3.3:-83776845 | MS.gene013025:CDS |
| TCCTTCTTGCTGGTCATGAA+AGG | 0.521617 | 3.3:+83776844 | None:intergenic |
| ATTAAAGAAGTTATTTCACC+AGG | 0.537639 | 3.3:-83777000 | MS.gene013025:CDS |
| ATAACCAAAGGATTCGCAAA+AGG | 0.539959 | 3.3:+83776414 | None:intergenic |
| TTCCGTTGATTTCCAGAACA+AGG | 0.549589 | 3.3:-83777615 | MS.gene013025:intron |
| TGTTTGAAGGTAGGTTGAAG+AGG | 0.552542 | 3.3:+83777671 | None:intergenic |
| ACGCGAATGAGTTGAGATGA+TGG | 0.554071 | 3.3:+83777786 | None:intergenic |
| CCAAATGAAACATTGAACCT+TGG | 0.554304 | 3.3:+83776613 | None:intergenic |
| GCTAATGCCCTGTACTTCAA+AGG | 0.557784 | 3.3:-83776946 | MS.gene013025:CDS |
| CCATACTCCTTTGAAGTACA+GGG | 0.559289 | 3.3:+83776939 | None:intergenic |
| ACAAAGTCTAGTCGAGGACG+AGG | 0.560984 | 3.3:+83776385 | None:intergenic |
| TCAAGAATCTGTTGTTGAGT+GGG | 0.564743 | 3.3:+83777830 | None:intergenic |
| AAAGGATTCGCAAAAGGCAT+AGG | 0.566802 | 3.3:+83776420 | None:intergenic |
| GGTCCGTGAGTACGACAGAA+AGG | 0.575098 | 3.3:+83777756 | None:intergenic |
| GATGCCGAGAATAATCTGAA+TGG | 0.576893 | 3.3:+83777874 | None:intergenic |
| TATCCTTTCTGTCGTACTCA+CGG | 0.577622 | 3.3:-83777759 | MS.gene013025:CDS |
| CAGAAATAAAATGAAGCTTG+TGG | 0.580945 | 3.3:+83776662 | None:intergenic |
| ACGGACCCTTATCTCACGGG+CGG | 0.592049 | 3.3:-83777740 | MS.gene013025:CDS |
| ACTCACGGACCCTTATCTCA+CGG | 0.596465 | 3.3:-83777744 | MS.gene013025:CDS |
| AGAAGTTATTTCACCAGGGG+CGG | 0.597921 | 3.3:-83776995 | MS.gene013025:CDS |
| CTCACGGACCCTTATCTCAC+GGG | 0.600128 | 3.3:-83777743 | MS.gene013025:CDS |
| TTAAAGAAGTTATTTCACCA+GGG | 0.604561 | 3.3:-83776999 | MS.gene013025:CDS |
| ATTCTCGGCATCATCGCTGC+CGG | 0.607891 | 3.3:-83777863 | MS.gene013025:CDS |
| TAGTGTGATTACCCAACAAG+AGG | 0.608597 | 3.3:+83776286 | None:intergenic |
| TAAAGTACATAGAGAATCGA+CGG | 0.609421 | 3.3:+83776755 | None:intergenic |
| TAAAGAAGTTATTTCACCAG+GGG | 0.613081 | 3.3:-83776998 | MS.gene013025:CDS |
| CGGACCCTTATCTCACGGGC+GGG | 0.613100 | 3.3:-83777739 | MS.gene013025:CDS |
| TACCTTGTTCTGGAAATCAA+CGG | 0.617645 | 3.3:+83777613 | None:intergenic |
| AAACACCATCGGCAAAAGAG+AGG | 0.627576 | 3.3:+83777711 | None:intergenic |
| TGATTGAGCTGCCATTGAGA+AGG | 0.630337 | 3.3:+83776872 | None:intergenic |
| CCATCGGCAAAAGAGAGGCG+AGG | 0.630495 | 3.3:+83777716 | None:intergenic |
| GATGGATGGATTTGGAGCGG+AGG | 0.631431 | 3.3:+83777804 | None:intergenic |
| AAGTCTAGTCGAGGACGAGG+AGG | 0.638120 | 3.3:+83776388 | None:intergenic |
| TAATTAGAAATAAGAATGGG+TGG | 0.638436 | 3.3:+83776356 | None:intergenic |
| TGAGCACCTGTCCAACAAAG+AGG | 0.641694 | 3.3:+83776311 | None:intergenic |
| TTGTTCAATCCAAACACCAT+CGG | 0.647678 | 3.3:+83777700 | None:intergenic |
| AGAATAATCTGAATGGAGAG+AGG | 0.655249 | 3.3:+83777881 | None:intergenic |
| GATGATGGATGGATTTGGAG+CGG | 0.661690 | 3.3:+83777801 | None:intergenic |
| TAGGTGACTTCAGAATTCCA+AGG | 0.662092 | 3.3:-83776630 | MS.gene013025:CDS |
| GAATGAGTTGAGATGATGGA+TGG | 0.663096 | 3.3:+83777790 | None:intergenic |
| TATGCTGAAGGAGTTAGGAG+TGG | 0.666483 | 3.3:-83776575 | MS.gene013025:CDS |
| ACGAGGAGGAGAATAACCAA+AGG | 0.686601 | 3.3:+83776402 | None:intergenic |
| TCAGCTACAAAGTCTAGTCG+AGG | 0.689387 | 3.3:+83776379 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTGATATGATTTTAT+AGG | - | chr3.3:83777155-83777174 | MS.gene013025:intron | 10.0% |
| !! | CTTTAATTAGAAATAAGAAT+GGG | + | chr3.3:83777876-83777895 | None:intergenic | 15.0% |
| !! | TCTTTAATTAGAAATAAGAA+TGG | + | chr3.3:83777877-83777896 | None:intergenic | 15.0% |
| !!! | TATTTCTAATTAAAGAAGAT+TGG | - | chr3.3:83777881-83777900 | MS.gene013025:CDS | 15.0% |
| !! | CTTAACATTATCTCTAAATT+AGG | + | chr3.3:83776722-83776741 | None:intergenic | 20.0% |
| !!! | TTTATTTCTGAAGTTAAAGT+AGG | - | chr3.3:83777577-83777596 | MS.gene013025:intron | 20.0% |
| ! | ATGCATTTGAATAACATTCA+TGG | + | chr3.3:83776939-83776958 | None:intergenic | 25.0% |
| ! | ATTAGCGTAAGAAATGTATA+TGG | - | chr3.3:83776845-83776864 | MS.gene013025:CDS | 25.0% |
| ! | GACCAATGAAGTTAATTTAT+GGG | - | chr3.3:83777188-83777207 | MS.gene013025:intron | 25.0% |
| ! | GTGAAGTTAAATCCATTATA+TGG | + | chr3.3:83776672-83776691 | None:intergenic | 25.0% |
| ! | TAATTAGAAATAAGAATGGG+TGG | + | chr3.3:83777873-83777892 | None:intergenic | 25.0% |
| ! | TGAATGTTATTCAAATGCAT+CGG | - | chr3.3:83776939-83776958 | MS.gene013025:CDS | 25.0% |
| ! | TGACCAATGAAGTTAATTTA+TGG | - | chr3.3:83777187-83777206 | MS.gene013025:intron | 25.0% |
| ! | TTGAATGCTAGAAAACAATA+AGG | + | chr3.3:83777027-83777046 | None:intergenic | 25.0% |
| !! | ATTAAAGAAGTTATTTCACC+AGG | - | chr3.3:83777226-83777245 | MS.gene013025:intron | 25.0% |
| !! | GAAAGACTTGTGAAATATTT+TGG | + | chr3.3:83777746-83777765 | None:intergenic | 25.0% |
| !! | TTAAAGAAGTTATTTCACCA+GGG | - | chr3.3:83777227-83777246 | MS.gene013025:intron | 25.0% |
| AATAGAAACATACCTTGTTC+TGG | + | chr3.3:83776626-83776645 | None:intergenic | 30.0% | |
| AATATATTGATCCTTCTTGC+TGG | + | chr3.3:83777395-83777414 | None:intergenic | 30.0% | |
| AGCCCATAAATTAACTTCAT+TGG | + | chr3.3:83777193-83777212 | None:intergenic | 30.0% | |
| ATCTGTTTACAAAGCAAACT+TGG | - | chr3.3:83776587-83776606 | MS.gene013025:CDS | 30.0% | |
| CAAGGTTCAATGTTTCATTT+GGG | - | chr3.3:83777614-83777633 | MS.gene013025:intron | 30.0% | |
| CAGAAATAAAATGAAGCTTG+TGG | + | chr3.3:83777567-83777586 | None:intergenic | 30.0% | |
| CTTCAACTTCCTTATAAACT+AGG | - | chr3.3:83777439-83777458 | MS.gene013025:intron | 30.0% | |
| GAAATCAAAGAAGGACATAA+AGG | + | chr3.3:83776804-83776823 | None:intergenic | 30.0% | |
| GTTAAATCCATTATATGGCA+TGG | + | chr3.3:83776667-83776686 | None:intergenic | 30.0% | |
| TAAAGTACATAGAGAATCGA+CGG | + | chr3.3:83777474-83777493 | None:intergenic | 30.0% | |
| TGAAAACACAATGTTGTTGT+TGG | + | chr3.3:83776325-83776344 | None:intergenic | 30.0% | |
| TGAAATTTCTGATATGCTGA+AGG | - | chr3.3:83777639-83777658 | MS.gene013025:CDS | 30.0% | |
| TTCATCAAAGTGAATGAAGA+AGG | - | chr3.3:83777763-83777782 | MS.gene013025:CDS | 30.0% | |
| TTGTTTAGAGAAGAGATGTT+TGG | + | chr3.3:83776301-83776320 | None:intergenic | 30.0% | |
| ! | AGATGACAGAATTTGTTTGA+AGG | + | chr3.3:83776571-83776590 | None:intergenic | 30.0% |
| ! | TAAAGAAGTTATTTCACCAG+GGG | - | chr3.3:83777228-83777247 | MS.gene013025:intron | 30.0% |
| ! | TATGATTTTCACCTTCTCAA+TGG | - | chr3.3:83777343-83777362 | MS.gene013025:intron | 30.0% |
| ! | TTTCTAGCATTCAACTAATG+AGG | - | chr3.3:83777033-83777052 | MS.gene013025:intron | 30.0% |
| !! | CTTAGTCTTGAGTTACAAAA+TGG | - | chr3.3:83776974-83776993 | MS.gene013025:CDS | 30.0% |
| AGAATAATCTGAATGGAGAG+AGG | + | chr3.3:83776348-83776367 | None:intergenic | 35.0% | |
| ATAACCAAAGGATTCGCAAA+AGG | + | chr3.3:83777815-83777834 | None:intergenic | 35.0% | |
| CAATATATTCGTGCTTTCGA+TGG | - | chr3.3:83777406-83777425 | MS.gene013025:intron | 35.0% | |
| CCAAATGAAACATTGAACCT+TGG | + | chr3.3:83777616-83777635 | None:intergenic | 35.0% | |
| CCAAGGTTCAATGTTTCATT+TGG | - | chr3.3:83777613-83777632 | MS.gene013025:intron | 35.0% | |
| CCTTTACTTACCTTGAAAAC+CGG | - | chr3.3:83776751-83776770 | MS.gene013025:CDS | 35.0% | |
| CTCTCCATTCAGATTATTCT+CGG | - | chr3.3:83776348-83776367 | MS.gene013025:CDS | 35.0% | |
| GTACTATCGGAAATCAAAGA+AGG | + | chr3.3:83776813-83776832 | None:intergenic | 35.0% | |
| TCAAGAATCTGTTGTTGAGT+GGG | + | chr3.3:83776399-83776418 | None:intergenic | 35.0% | |
| TCATCTTGGCCTAGTTTATA+AGG | + | chr3.3:83777451-83777470 | None:intergenic | 35.0% | |
| TTGTTCAATCCAAACACCAT+CGG | + | chr3.3:83776529-83776548 | None:intergenic | 35.0% | |
| ! | AAAAATGGTTGACTCTGTTG+AGG | - | chr3.3:83777702-83777721 | MS.gene013025:CDS | 35.0% |
| ! | GACAGAATTTGTTTGAAGGT+AGG | + | chr3.3:83776567-83776586 | None:intergenic | 35.0% |
| ! | TTGAGTTCTTTTCACAAGTG+TGG | + | chr3.3:83777109-83777128 | None:intergenic | 35.0% |
| !! | TACCTTGTTCTGGAAATCAA+CGG | + | chr3.3:83776616-83776635 | None:intergenic | 35.0% |
| !!! | ACTTTTTTGTGTCAACTCAC+CGG | + | chr3.3:83776773-83776792 | None:intergenic | 35.0% |
| AACAATCCTCTTTGTTGGAC+AGG | - | chr3.3:83777909-83777928 | MS.gene013025:CDS | 40.0% | |
| ACCAGAACAATCCTCTTTGT+TGG | - | chr3.3:83777904-83777923 | MS.gene013025:CDS | 40.0% | |
| ATTCTTCCAGATGCGAAAGA+TGG | - | chr3.3:83777493-83777512 | MS.gene013025:intron | 40.0% | |
| CCACAATCCATGCCATATAA+TGG | - | chr3.3:83776657-83776676 | MS.gene013025:CDS | 40.0% | |
| GATGCCGAGAATAATCTGAA+TGG | + | chr3.3:83776355-83776374 | None:intergenic | 40.0% | |
| GTCAAGAATCTGTTGTTGAG+TGG | + | chr3.3:83776400-83776419 | None:intergenic | 40.0% | |
| TAGGTGACTTCAGAATTCCA+AGG | - | chr3.3:83777596-83777615 | MS.gene013025:intron | 40.0% | |
| TATCCTTTCTGTCGTACTCA+CGG | - | chr3.3:83776467-83776486 | MS.gene013025:CDS | 40.0% | |
| TCAAGACTAAGAGCTGGTAT+AGG | + | chr3.3:83776965-83776984 | None:intergenic | 40.0% | |
| TCCAACAAAGAGGATTGTTC+TGG | + | chr3.3:83777908-83777927 | None:intergenic | 40.0% | |
| TCTGATATGCTGAAGGAGTT+AGG | - | chr3.3:83777646-83777665 | MS.gene013025:CDS | 40.0% | |
| TGACGTGAAGGTTGTACTAT+CGG | + | chr3.3:83776826-83776845 | None:intergenic | 40.0% | |
| TGTAACTCAAGACTAAGAGC+TGG | + | chr3.3:83776971-83776990 | None:intergenic | 40.0% | |
| TTCTTACGCTAATGACGTGA+AGG | + | chr3.3:83776838-83776857 | None:intergenic | 40.0% | |
| ! | AAAGGATTCGCAAAAGGCAT+AGG | + | chr3.3:83777809-83777828 | None:intergenic | 40.0% |
| ! | CCATTATATGGCATGGATTG+TGG | + | chr3.3:83776660-83776679 | None:intergenic | 40.0% |
| ! | TATGCCTTTTGCGAATCCTT+TGG | - | chr3.3:83777808-83777827 | MS.gene013025:CDS | 40.0% |
| ! | TGTTTGAAGGTAGGTTGAAG+AGG | + | chr3.3:83776558-83776577 | None:intergenic | 40.0% |
| ! | TTCGCAAAAGGCATAGGTTA+CGG | + | chr3.3:83777803-83777822 | None:intergenic | 40.0% |
| !! | AACCATTTTTGTCAGACCTC+CGG | + | chr3.3:83777692-83777711 | None:intergenic | 40.0% |
| !! | ACCATACTCCTTTGAAGTAC+AGG | + | chr3.3:83777291-83777310 | None:intergenic | 40.0% |
| !! | CCATACTCCTTTGAAGTACA+GGG | + | chr3.3:83777290-83777309 | None:intergenic | 40.0% |
| !! | CCGGTTTTCAAGGTAAGTAA+AGG | + | chr3.3:83776754-83776773 | None:intergenic | 40.0% |
| !! | GAATGAGTTGAGATGATGGA+TGG | + | chr3.3:83776439-83776458 | None:intergenic | 40.0% |
| !! | GTTGAGATGATGGATGGATT+TGG | + | chr3.3:83776433-83776452 | None:intergenic | 40.0% |
| !! | TTCCGTTGATTTCCAGAACA+AGG | - | chr3.3:83776611-83776630 | MS.gene013025:CDS | 40.0% |
| AAACACCATCGGCAAAAGAG+AGG | + | chr3.3:83776518-83776537 | None:intergenic | 45.0% | |
| ACGAGGAGGAGAATAACCAA+AGG | + | chr3.3:83777827-83777846 | None:intergenic | 45.0% | |
| AGGTGCTCAATCCTCTTGTT+GGG | - | chr3.3:83777929-83777948 | MS.gene013025:CDS | 45.0% | |
| CCCTGTACTTCAAAGGAGTA+TGG | - | chr3.3:83777287-83777306 | MS.gene013025:intron | 45.0% | |
| GCTAATGCCCTGTACTTCAA+AGG | - | chr3.3:83777280-83777299 | MS.gene013025:intron | 45.0% | |
| TAGAGAATCGACGGTCATCT+TGG | + | chr3.3:83777465-83777484 | None:intergenic | 45.0% | |
| TATGCTGAAGGAGTTAGGAG+TGG | - | chr3.3:83777651-83777670 | MS.gene013025:CDS | 45.0% | |
| TCAGCTACAAAGTCTAGTCG+AGG | + | chr3.3:83777850-83777869 | None:intergenic | 45.0% | |
| TCCTTCTTGCTGGTCATGAA+AGG | + | chr3.3:83777385-83777404 | None:intergenic | 45.0% | |
| TCCTTTCATGACCAGCAAGA+AGG | - | chr3.3:83777381-83777400 | MS.gene013025:intron | 45.0% | |
| TCTCAATGGCAGCTCAATCA+AGG | - | chr3.3:83777357-83777376 | MS.gene013025:intron | 45.0% | |
| TGATTGAGCTGCCATTGAGA+AGG | + | chr3.3:83777357-83777376 | None:intergenic | 45.0% | |
| ! | ACGCGAATGAGTTGAGATGA+TGG | + | chr3.3:83776443-83776462 | None:intergenic | 45.0% |
| ! | AGAAGTTATTTCACCAGGGG+CGG | - | chr3.3:83777231-83777250 | MS.gene013025:intron | 45.0% |
| ! | CTCAGCTTTGGTTGAGAAGA+TGG | - | chr3.3:83777519-83777538 | MS.gene013025:intron | 45.0% |
| ! | GAAAGATGGACTCTCAGCTT+TGG | - | chr3.3:83777507-83777526 | MS.gene013025:intron | 45.0% |
| ! | TCTCTTTTGCCGATGGTGTT+TGG | - | chr3.3:83776517-83776536 | MS.gene013025:CDS | 45.0% |
| ! | TCTTTTCACAAGTGTGGCAG+TGG | + | chr3.3:83777103-83777122 | None:intergenic | 45.0% |
| !! | ACCATTTTTGTCAGACCTCC+GGG | + | chr3.3:83777691-83777710 | None:intergenic | 45.0% |
| !! | GATGATGGATGGATTTGGAG+CGG | + | chr3.3:83776428-83776447 | None:intergenic | 45.0% |
| !! | GTGGTTTTACCTTTCTCTCC+CGG | - | chr3.3:83777670-83777689 | MS.gene013025:CDS | 45.0% |
| !!! | TGTCAACTCACCGGTTTTCA+AGG | + | chr3.3:83776764-83776783 | None:intergenic | 45.0% |
| !! | TTAAAATAAAAAATTACAAA+TGG | + | chr3.3:83777137-83777156 | None:intergenic | 5.0% |
| ACAAAGTCTAGTCGAGGACG+AGG | + | chr3.3:83777844-83777863 | None:intergenic | 50.0% | |
| ACTCACGGACCCTTATCTCA+CGG | - | chr3.3:83776482-83776501 | MS.gene013025:CDS | 50.0% | |
| CAGGTGCTCAATCCTCTTGT+TGG | - | chr3.3:83777928-83777947 | MS.gene013025:CDS | 50.0% | |
| GAGAGTCCATCTTTCGCATC+TGG | + | chr3.3:83777502-83777521 | None:intergenic | 50.0% | |
| TCCCGGAGGTCTGACAAAAA+TGG | - | chr3.3:83777687-83777706 | MS.gene013025:CDS | 50.0% | |
| TGAGCACCTGTCCAACAAAG+AGG | + | chr3.3:83777918-83777937 | None:intergenic | 50.0% | |
| ! | GTTTTACCTTTCTCTCCCGG+AGG | - | chr3.3:83777673-83777692 | MS.gene013025:CDS | 50.0% |
| AAGTCTAGTCGAGGACGAGG+AGG | + | chr3.3:83777841-83777860 | None:intergenic | 55.0% | |
| ATTCTCGGCATCATCGCTGC+CGG | - | chr3.3:83776363-83776382 | MS.gene013025:CDS | 55.0% | |
| CTCACGGACCCTTATCTCAC+GGG | - | chr3.3:83776483-83776502 | MS.gene013025:CDS | 55.0% | |
| GGTCCGTGAGTACGACAGAA+AGG | + | chr3.3:83776473-83776492 | None:intergenic | 55.0% | |
| ! | GATGGATGGATTTGGAGCGG+AGG | + | chr3.3:83776425-83776444 | None:intergenic | 55.0% |
| ACGGACCCTTATCTCACGGG+CGG | - | chr3.3:83776486-83776505 | MS.gene013025:CDS | 60.0% | |
| CCATCGGCAAAAGAGAGGCG+AGG | + | chr3.3:83776513-83776532 | None:intergenic | 60.0% | |
| GTCAGACCTCCGGGAGAGAA+AGG | + | chr3.3:83777682-83777701 | None:intergenic | 60.0% | |
| GTTAAGCTGTTGACCGCCCC+TGG | + | chr3.3:83777247-83777266 | None:intergenic | 60.0% | |
| TTGAGTGGGACCCTCAGAGC+CGG | + | chr3.3:83776385-83776404 | None:intergenic | 60.0% | |
| ! | CCTCGCCTCTCTTTTGCCGA+TGG | - | chr3.3:83776510-83776529 | MS.gene013025:CDS | 60.0% |
| !! | ATCATCGCTGCCGGCTCTGA+GGG | - | chr3.3:83776372-83776391 | MS.gene013025:CDS | 60.0% |
| CGGACCCTTATCTCACGGGC+GGG | - | chr3.3:83776487-83776506 | MS.gene013025:CDS | 65.0% | |
| GAGGCCCGCCCGTGAGATAA+GGG | + | chr3.3:83776494-83776513 | None:intergenic | 65.0% | |
| !! | CATCATCGCTGCCGGCTCTG+AGG | - | chr3.3:83776371-83776390 | MS.gene013025:CDS | 65.0% |
| CGAGGCCCGCCCGTGAGATA+AGG | + | chr3.3:83776495-83776514 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83776294 | 83777954 | 83776294 | ID=MS.gene013025 |
| chr3.3 | mRNA | 83776294 | 83777954 | 83776294 | ID=MS.gene013025.t1;Parent=MS.gene013025 |
| chr3.3 | exon | 83777616 | 83777954 | 83777616 | ID=MS.gene013025.t1.exon1;Parent=MS.gene013025.t1 |
| chr3.3 | CDS | 83777616 | 83777954 | 83777616 | ID=cds.MS.gene013025.t1;Parent=MS.gene013025.t1 |
| chr3.3 | exon | 83776294 | 83777028 | 83776294 | ID=MS.gene013025.t1.exon2;Parent=MS.gene013025.t1 |
| chr3.3 | CDS | 83776294 | 83777028 | 83776294 | ID=cds.MS.gene013025.t1;Parent=MS.gene013025.t1 |
| Gene Sequence |
| Protein sequence |
