Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013028.t1 | XP_003602973.1 | 76.1 | 385 | 87 | 3 | 30 | 411 | 5 | 387 | 2.60E-160 | 575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013028.t1 | Q9S7T8 | 54.8 | 383 | 165 | 5 | 35 | 411 | 10 | 390 | 7.1e-114 | 412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013028.t1 | G7J5Q8 | 76.1 | 385 | 87 | 3 | 30 | 411 | 5 | 387 | 1.9e-160 | 575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene013028 | PPI |
| MS.gene031697 | MS.gene013028 | PPI |
| MS.gene013028 | MS.gene045585 | PPI |
| MS.gene013028 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene013028 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013028.t1 | MTR_3g101030 | 70.264 | 417 | 103 | 6 | 16 | 412 | 13 | 428 | 0.0 | 572 |
| MS.gene013028.t1 | MTR_3g101010 | 75.907 | 386 | 88 | 3 | 30 | 412 | 5 | 388 | 0.0 | 570 |
| MS.gene013028.t1 | MTR_4g045707 | 69.330 | 388 | 114 | 3 | 27 | 412 | 3 | 387 | 0.0 | 535 |
| MS.gene013028.t1 | MTR_3g018740 | 71.169 | 385 | 105 | 3 | 30 | 411 | 5 | 386 | 0.0 | 529 |
| MS.gene013028.t1 | MTR_8g027395 | 68.490 | 384 | 114 | 3 | 30 | 411 | 17 | 395 | 0.0 | 520 |
| MS.gene013028.t1 | MTR_3g101050 | 70.277 | 397 | 93 | 8 | 23 | 412 | 19 | 397 | 0.0 | 518 |
| MS.gene013028.t1 | MTR_8g027420 | 67.969 | 384 | 105 | 4 | 30 | 411 | 6 | 373 | 6.85e-180 | 506 |
| MS.gene013028.t1 | MTR_3g101130 | 64.844 | 384 | 131 | 2 | 30 | 411 | 6 | 387 | 7.48e-175 | 494 |
| MS.gene013028.t1 | MTR_3g101180 | 65.909 | 396 | 124 | 4 | 27 | 411 | 3 | 398 | 1.28e-173 | 491 |
| MS.gene013028.t1 | MTR_4g088525 | 67.486 | 366 | 110 | 4 | 49 | 411 | 8 | 367 | 5.04e-173 | 488 |
| MS.gene013028.t1 | MTR_7g451890 | 61.307 | 398 | 149 | 2 | 19 | 411 | 3 | 400 | 7.04e-172 | 486 |
| MS.gene013028.t1 | MTR_7g050750 | 61.675 | 394 | 146 | 2 | 23 | 411 | 1 | 394 | 5.14e-170 | 481 |
| MS.gene013028.t1 | MTR_7g050810 | 61.832 | 393 | 139 | 4 | 27 | 411 | 13 | 402 | 9.47e-169 | 479 |
| MS.gene013028.t1 | MTR_7g047780 | 60.804 | 398 | 151 | 2 | 19 | 411 | 3 | 400 | 1.11e-168 | 478 |
| MS.gene013028.t1 | MTR_8g461160 | 63.496 | 389 | 137 | 3 | 28 | 411 | 4 | 392 | 3.11e-168 | 477 |
| MS.gene013028.t1 | MTR_3g048000 | 61.576 | 406 | 126 | 6 | 15 | 411 | 6 | 390 | 1.68e-167 | 475 |
| MS.gene013028.t1 | MTR_2g045980 | 62.371 | 388 | 134 | 5 | 30 | 411 | 5 | 386 | 8.67e-163 | 463 |
| MS.gene013028.t1 | MTR_4g088535 | 62.924 | 383 | 119 | 4 | 28 | 408 | 5 | 366 | 1.94e-162 | 462 |
| MS.gene013028.t1 | MTR_2g046030 | 61.856 | 388 | 136 | 5 | 30 | 411 | 5 | 386 | 5.61e-162 | 461 |
| MS.gene013028.t1 | MTR_3g015620 | 60.298 | 403 | 126 | 7 | 14 | 411 | 5 | 378 | 1.44e-147 | 424 |
| MS.gene013028.t1 | MTR_3g101200 | 55.949 | 395 | 143 | 7 | 21 | 411 | 23 | 390 | 1.95e-140 | 406 |
| MS.gene013028.t1 | MTR_3g100995 | 74.206 | 252 | 65 | 0 | 160 | 411 | 11 | 262 | 2.01e-138 | 396 |
| MS.gene013028.t1 | MTR_3g102920 | 56.728 | 379 | 123 | 5 | 38 | 411 | 66 | 408 | 9.83e-134 | 390 |
| MS.gene013028.t1 | MTR_3g101190 | 55.556 | 360 | 96 | 4 | 54 | 411 | 13 | 310 | 4.41e-123 | 359 |
| MS.gene013028.t1 | MTR_3g018747 | 67.568 | 259 | 67 | 2 | 156 | 411 | 9 | 253 | 3.86e-118 | 344 |
| MS.gene013028.t1 | MTR_3g100010 | 54.167 | 360 | 107 | 5 | 21 | 343 | 4 | 342 | 6.13e-118 | 347 |
| MS.gene013028.t1 | MTR_7g050830 | 52.888 | 329 | 124 | 2 | 16 | 324 | 2 | 319 | 3.95e-112 | 332 |
| MS.gene013028.t1 | MTR_3g015760 | 61.733 | 277 | 103 | 3 | 137 | 411 | 4 | 279 | 9.83e-105 | 311 |
| MS.gene013028.t1 | MTR_3g101110 | 60.669 | 239 | 61 | 3 | 156 | 387 | 68 | 280 | 1.54e-91 | 278 |
| MS.gene013028.t1 | MTR_3g100520 | 63.470 | 219 | 64 | 3 | 197 | 411 | 1 | 207 | 1.91e-90 | 272 |
| MS.gene013028.t1 | MTR_3g114310 | 42.317 | 397 | 202 | 12 | 32 | 410 | 20 | 407 | 2.40e-89 | 276 |
| MS.gene013028.t1 | MTR_3g111160 | 66.667 | 207 | 65 | 2 | 208 | 411 | 13 | 218 | 1.83e-88 | 267 |
| MS.gene013028.t1 | MTR_3g099970 | 69.231 | 195 | 43 | 2 | 156 | 349 | 20 | 198 | 6.55e-87 | 263 |
| MS.gene013028.t1 | MTR_2g046410 | 61.463 | 205 | 72 | 3 | 213 | 411 | 144 | 347 | 4.50e-79 | 248 |
| MS.gene013028.t1 | MTR_3g101020 | 63.736 | 182 | 42 | 1 | 230 | 411 | 1 | 158 | 4.84e-75 | 231 |
| MS.gene013028.t1 | MTR_3g101150 | 65.605 | 157 | 47 | 3 | 262 | 411 | 1 | 157 | 2.20e-61 | 196 |
| MS.gene013028.t1 | MTR_3g111150 | 57.627 | 177 | 49 | 3 | 34 | 210 | 3 | 153 | 2.72e-57 | 186 |
| MS.gene013028.t1 | MTR_3g102870 | 56.442 | 163 | 64 | 2 | 219 | 374 | 1 | 163 | 6.08e-56 | 182 |
| MS.gene013028.t1 | MTR_3g100990 | 68.702 | 131 | 39 | 1 | 30 | 160 | 5 | 133 | 3.11e-49 | 174 |
| MS.gene013028.t1 | MTR_4g093550 | 67.816 | 87 | 26 | 1 | 29 | 115 | 5 | 89 | 2.58e-29 | 110 |
| MS.gene013028.t1 | MTR_3g101140 | 47.934 | 121 | 48 | 3 | 294 | 412 | 8 | 115 | 5.42e-22 | 90.9 |
| MS.gene013028.t1 | MTR_6g046890 | 52.679 | 112 | 33 | 4 | 51 | 142 | 18 | 129 | 1.52e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013028.t1 | AT1G47710 | 54.830 | 383 | 165 | 5 | 35 | 411 | 10 | 390 | 1.64e-147 | 424 |
| MS.gene013028.t1 | AT1G47710 | 54.830 | 383 | 165 | 5 | 35 | 411 | 37 | 417 | 6.53e-147 | 424 |
| MS.gene013028.t1 | AT3G45220 | 48.469 | 392 | 185 | 6 | 30 | 410 | 5 | 390 | 4.62e-127 | 372 |
| MS.gene013028.t1 | AT2G26390 | 47.970 | 394 | 180 | 7 | 30 | 410 | 5 | 386 | 2.71e-120 | 355 |
| MS.gene013028.t1 | AT2G25240 | 48.969 | 388 | 181 | 8 | 30 | 410 | 5 | 382 | 3.96e-120 | 354 |
| MS.gene013028.t1 | AT1G64030 | 43.896 | 385 | 190 | 6 | 34 | 412 | 9 | 373 | 5.20e-99 | 300 |
| MS.gene013028.t1 | AT2G14540 | 43.979 | 382 | 188 | 5 | 34 | 410 | 37 | 397 | 8.21e-96 | 293 |
| MS.gene013028.t1 | AT1G62170 | 41.803 | 366 | 183 | 5 | 53 | 410 | 88 | 431 | 6.79e-93 | 286 |
| MS.gene013028.t1 | AT2G35580 | 43.817 | 372 | 181 | 8 | 49 | 410 | 18 | 371 | 1.23e-92 | 284 |
| MS.gene013028.t1 | AT1G62170 | 38.346 | 399 | 183 | 6 | 53 | 410 | 88 | 464 | 6.30e-86 | 270 |
| MS.gene013028.t1 | AT1G64010 | 49.074 | 216 | 87 | 5 | 197 | 410 | 1 | 195 | 6.49e-63 | 201 |
| MS.gene013028.t1 | AT1G64010 | 48.259 | 201 | 81 | 5 | 212 | 410 | 2 | 181 | 1.91e-55 | 181 |
| MS.gene013028.t1 | AT1G63280 | 58.261 | 115 | 44 | 2 | 156 | 268 | 8 | 120 | 4.21e-38 | 134 |
| MS.gene013028.t1 | AT1G62160 | 39.665 | 179 | 86 | 4 | 234 | 410 | 60 | 218 | 5.92e-33 | 124 |
| MS.gene013028.t1 | AT1G51330 | 53.153 | 111 | 49 | 3 | 155 | 262 | 30 | 140 | 1.09e-25 | 103 |
| MS.gene013028.t1 | AT1G64020 | 32.743 | 113 | 73 | 3 | 35 | 146 | 10 | 120 | 1.17e-12 | 65.1 |
Find 96 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATGCACTGTACTTTAA+AGG | 0.144123 | 3.3:+83740243 | MS.gene013028:CDS |
| TGATTAATAAAGTGAATTTA+TGG | 0.211117 | 3.3:+83740142 | MS.gene013028:CDS |
| TTTGGAAGCATCAAACTTAT+TGG | 0.242719 | 3.3:-83740274 | None:intergenic |
| CTTCTTCTTGCTGATCATAA+AGG | 0.256844 | 3.3:-83740346 | None:intergenic |
| GGAAACGTTGGTTTGGTTAA+TGG | 0.276967 | 3.3:-83739591 | None:intergenic |
| GTCAGACCTCCATTAGTAAA+AGG | 0.277817 | 3.3:-83740639 | None:intergenic |
| TTATCTTTGCCTTGCTTATA+CGG | 0.281478 | 3.3:-83740411 | None:intergenic |
| GAAAGACTTGTGAAATATAT+TGG | 0.284781 | 3.3:-83740697 | None:intergenic |
| GAAGAAGTTTAGATGATAGA+TGG | 0.319896 | 3.3:-83739768 | None:intergenic |
| CTCTCTGATGCCGCTCCCTT+TGG | 0.322428 | 3.3:+83739815 | MS.gene013028:CDS |
| AAAATCATAGTCTTTCGTTT+TGG | 0.334440 | 3.3:-83740292 | None:intergenic |
| CATCATAGCTGCTGGATCTC+AGG | 0.345380 | 3.3:+83739703 | MS.gene013028:CDS |
| TAATGGAGGTCTGACTAAAA+TGG | 0.358053 | 3.3:+83740647 | MS.gene013028:CDS |
| CAACAACTTCTCCACTTCCT+TGG | 0.372691 | 3.3:+83739737 | MS.gene013028:CDS |
| ACCGGAACTGTCGTCTTTGT+TGG | 0.377962 | 3.3:+83740855 | MS.gene013028:CDS |
| GATTAATAAAGTGAATTTAT+GGG | 0.381941 | 3.3:+83740143 | MS.gene013028:CDS |
| TTGTTCAACCCACACACTAT+TGG | 0.385574 | 3.3:-83739858 | None:intergenic |
| CAAACTTCCATTTGTTAAAG+TGG | 0.390173 | 3.3:+83740530 | MS.gene013028:CDS |
| TTCTTCTTGCTGATCATAAA+GGG | 0.399742 | 3.3:-83740345 | None:intergenic |
| CAAATGAAATATTGAACCTT+GGG | 0.407101 | 3.3:-83740572 | None:intergenic |
| GGTTTGGTTAATGGCAGATT+GGG | 0.427282 | 3.3:-83739582 | None:intergenic |
| AACTGTCGTCTTTGTTGGAC+AGG | 0.431215 | 3.3:+83740860 | MS.gene013028:CDS |
| TCTGATATGCTGAAGGAGTT+AGG | 0.433201 | 3.3:+83740606 | MS.gene013028:CDS |
| GGCAGCCCGTCTTTAGCATC+TGG | 0.437451 | 3.3:-83740462 | None:intergenic |
| TGAAGGAAGGTTGAAGGGGA+AGG | 0.438255 | 3.3:-83739883 | None:intergenic |
| GTGTTGTATCAACTCAGTTT+CGG | 0.441820 | 3.3:-83740508 | None:intergenic |
| CCTACCTCCACTTTAACAAA+TGG | 0.449735 | 3.3:-83740537 | None:intergenic |
| CTCTGTTGCCAATAGTGTGT+GGG | 0.456798 | 3.3:+83739850 | MS.gene013028:CDS |
| GGACAGGTGCTCAATCCTCT+TGG | 0.458320 | 3.3:+83740876 | MS.gene013028:CDS |
| TCTGATGCCGCTCCCTTTGG+TGG | 0.459258 | 3.3:+83739818 | MS.gene013028:CDS |
| TTAAAGAAATTCTTCGTCAA+GGG | 0.460026 | 3.3:+83740190 | MS.gene013028:CDS |
| CTGGAGCAGTCGGCAGCTCC+AGG | 0.463577 | 3.3:+83740766 | MS.gene013028:CDS |
| TTCATTGAAGTAAACGAAGA+AGG | 0.464021 | 3.3:+83740717 | MS.gene013028:CDS |
| GAAGGAAGGTTGAAGGGGAA+GGG | 0.464022 | 3.3:-83739882 | None:intergenic |
| TCCAACAAAGACGACAGTTC+CGG | 0.465222 | 3.3:-83740856 | None:intergenic |
| AGTAGACACAGTTTCTTTGA+AGG | 0.465284 | 3.3:-83739900 | None:intergenic |
| CAAAGATGAGTCTGGTTAAG+TGG | 0.470681 | 3.3:-83740221 | None:intergenic |
| TGGTTTGGTTAATGGCAGAT+TGG | 0.472763 | 3.3:-83739583 | None:intergenic |
| TTTCTTTGAAGGAAGGTTGA+AGG | 0.474955 | 3.3:-83739889 | None:intergenic |
| GCTGCTGCGGTCACTATAGC+TGG | 0.475236 | 3.3:+83740747 | MS.gene013028:CDS |
| TGCATTTGCAAAGATGAGTC+TGG | 0.477055 | 3.3:-83740229 | None:intergenic |
| TCAAATGAAATATTGAACCT+TGG | 0.481541 | 3.3:-83740573 | None:intergenic |
| GTGCTCAGCATCATAGCTGC+TGG | 0.482388 | 3.3:+83739695 | MS.gene013028:CDS |
| CTATGATGCTGAGCACAACT+TGG | 0.485939 | 3.3:-83739688 | None:intergenic |
| GCGAGGACCACCAAAGGGAG+CGG | 0.502275 | 3.3:-83739825 | None:intergenic |
| TTCTTTGAAGGAAGGTTGAA+GGG | 0.503893 | 3.3:-83739888 | None:intergenic |
| ATTAAAGAAATTCTTCGTCA+AGG | 0.506528 | 3.3:+83740189 | MS.gene013028:CDS |
| TGGTGAGGGAAACGTTGGTT+TGG | 0.507864 | 3.3:-83739598 | None:intergenic |
| GGTTAATGGCAGATTGGGAT+CGG | 0.516446 | 3.3:-83739577 | None:intergenic |
| TATTCGAGTTGGAACAATCC+TGG | 0.518259 | 3.3:-83740784 | None:intergenic |
| TTCTTCCAGATGCTAAAGAC+GGG | 0.519130 | 3.3:+83740457 | MS.gene013028:CDS |
| TGGATTTAAAGCCAAGGAAG+TGG | 0.525756 | 3.3:-83739748 | None:intergenic |
| GAAATATATTGGAAATACAA+AGG | 0.530250 | 3.3:-83740686 | None:intergenic |
| AGAGAGGCGAGGACCACCAA+AGG | 0.532175 | 3.3:-83739831 | None:intergenic |
| CCATTTGTTAAAGTGGAGGT+AGG | 0.536690 | 3.3:+83740537 | MS.gene013028:CDS |
| ATGATCAGAGAAGATTTGAC+CGG | 0.538023 | 3.3:+83740837 | MS.gene013028:CDS |
| GACACAGTTTCTTTGAAGGA+AGG | 0.540665 | 3.3:-83739896 | None:intergenic |
| AGCGGCATCAGAGAGGATGA+TGG | 0.541979 | 3.3:-83739807 | None:intergenic |
| TTTCTTCCAGATGCTAAAGA+CGG | 0.548041 | 3.3:+83740456 | MS.gene013028:CDS |
| ATCATAGCTGCTGGATCTCA+GGG | 0.553300 | 3.3:+83739704 | MS.gene013028:CDS |
| TTCCGTTGATTTCAAGAACA+AGG | 0.553793 | 3.3:+83739943 | MS.gene013028:CDS |
| CACTGTACTTTAAAGGAGCA+TGG | 0.554893 | 3.3:+83740250 | MS.gene013028:CDS |
| GGCGATGGTGAGGGAAACGT+TGG | 0.556591 | 3.3:-83739603 | None:intergenic |
| AGAAGGCACTGAGGCTGCTG+CGG | 0.558311 | 3.3:+83740734 | MS.gene013028:CDS |
| TGGGCTGAGAAAGAGACAAA+TGG | 0.565306 | 3.3:+83740162 | MS.gene013028:CDS |
| AGAAATTCTTCGTCAAGGGT+CGG | 0.568942 | 3.3:+83740194 | MS.gene013028:CDS |
| AAGTGGAGGTAGGTGACTTG+AGG | 0.572019 | 3.3:+83740547 | MS.gene013028:CDS |
| GCTACAAAGTCTATTCGAGT+TGG | 0.573441 | 3.3:-83740795 | None:intergenic |
| TACCTTGTTCTTGAAATCAA+CGG | 0.574876 | 3.3:-83739945 | None:intergenic |
| TCTTTGAAGGAAGGTTGAAG+GGG | 0.577014 | 3.3:-83739887 | None:intergenic |
| GTCACTATAGCTGGAGCAGT+CGG | 0.586529 | 3.3:+83740756 | MS.gene013028:CDS |
| AGCTGACGATGTTCATGTGT+GGG | 0.587278 | 3.3:-83739542 | None:intergenic |
| TGAAACTTCTGATATGCTGA+AGG | 0.594035 | 3.3:+83740599 | MS.gene013028:CDS |
| CTTGGTCTTCCGTATAAGCA+AGG | 0.596297 | 3.3:+83740402 | MS.gene013028:CDS |
| GGCAACTTCTCAAGCAACGT+TGG | 0.597920 | 3.3:-83740483 | None:intergenic |
| TCTCTGTTGCCAATAGTGTG+TGG | 0.608134 | 3.3:+83739849 | MS.gene013028:CDS |
| ATAGATGTTTGGCGATGGTG+AGG | 0.612058 | 3.3:-83739613 | None:intergenic |
| ACTTCCATTTGTTAAAGTGG+AGG | 0.617944 | 3.3:+83740533 | MS.gene013028:CDS |
| GAGAGGCGAGGACCACCAAA+GGG | 0.625024 | 3.3:-83739830 | None:intergenic |
| TCTCAATGGTAGATCAGTCA+AGG | 0.625303 | 3.3:+83740320 | MS.gene013028:CDS |
| TGTATCAACTCAGTTTCGGA+AGG | 0.630650 | 3.3:-83740504 | None:intergenic |
| TAGGTGACTTGAGGATCCCA+AGG | 0.631375 | 3.3:+83740556 | MS.gene013028:CDS |
| GTGGAGAAGTTGTTGTTGAG+TGG | 0.637951 | 3.3:-83739729 | None:intergenic |
| AGCACAACTTGGATTGAGAG+TGG | 0.642348 | 3.3:-83739677 | None:intergenic |
| TGACTGATCTACCATTGAGA+AGG | 0.642584 | 3.3:-83740317 | None:intergenic |
| TAGATGTTTGGCGATGGTGA+GGG | 0.644133 | 3.3:-83739612 | None:intergenic |
| TGTGAATAGATGTTTGGCGA+TGG | 0.645801 | 3.3:-83739618 | None:intergenic |
| GATAGATGGATTTAAAGCCA+AGG | 0.649919 | 3.3:-83739754 | None:intergenic |
| TAATGGCAGATTGGGATCGG+AGG | 0.667018 | 3.3:-83739574 | None:intergenic |
| TATGCTGAAGGAGTTAGGCG+TGG | 0.677943 | 3.3:+83740611 | MS.gene013028:CDS |
| AAGCTGACGATGTTCATGTG+TGG | 0.681027 | 3.3:-83739543 | None:intergenic |
| CAAAGGGAGCGGCATCAGAG+AGG | 0.694948 | 3.3:-83739814 | None:intergenic |
| GCTCGCCAAGATCATCCAAG+AGG | 0.725110 | 3.3:-83740891 | None:intergenic |
| ACACACTATTGGCAACAGAG+AGG | 0.733111 | 3.3:-83739847 | None:intergenic |
| CTATTGGCAACAGAGAGGCG+AGG | 0.753182 | 3.3:-83739842 | None:intergenic |
| AGTAAACGAAGAAGGCACTG+AGG | 0.767944 | 3.3:+83740725 | MS.gene013028:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAATAAAAAAATTA+GGG | - | chr3.3:83739207-83739226 | None:intergenic | 0.0% |
| !! | TAATAAAAAATAAAAAAATT+AGG | - | chr3.3:83739208-83739227 | None:intergenic | 0.0% |
| !!! | AAATGATATATTTTTTTGAA+TGG | + | chr3.3:83739083-83739102 | MS.gene013028:intron | 10.0% |
| !! | GATTAATAAAGTGAATTTAT+GGG | + | chr3.3:83740143-83740162 | MS.gene013028:CDS | 15.0% |
| !! | TGATTAATAAAGTGAATTTA+TGG | + | chr3.3:83740142-83740161 | MS.gene013028:CDS | 15.0% |
| !!! | AGTTTTTTAATGTGATATAT+AGG | + | chr3.3:83739037-83739056 | MS.gene013028:intron | 15.0% |
| !!! | GAATTTAAAATTTTAACAGT+TGG | - | chr3.3:83740032-83740051 | None:intergenic | 15.0% |
| !! | AAAATAAAAAAATTAGGGTG+AGG | - | chr3.3:83739202-83739221 | None:intergenic | 20.0% |
| !! | AAGTGATTGGAAAATTATTT+GGG | - | chr3.3:83739260-83739279 | None:intergenic | 20.0% |
| !! | AATGTTAATGAGTGTATAAA+AGG | + | chr3.3:83739113-83739132 | MS.gene013028:intron | 20.0% |
| !! | CTCTGATCATAAATAAAAAA+GGG | - | chr3.3:83740827-83740846 | None:intergenic | 20.0% |
| !! | GAAATATATTGGAAATACAA+AGG | - | chr3.3:83740689-83740708 | None:intergenic | 20.0% |
| !! | TCAAAAACGAATAGTATTAT+TGG | + | chr3.3:83739506-83739525 | MS.gene013028:intron | 20.0% |
| !! | TCTCTGATCATAAATAAAAA+AGG | - | chr3.3:83740828-83740847 | None:intergenic | 20.0% |
| !!! | ATAAATTGACATGGTTTTAA+AGG | + | chr3.3:83740110-83740129 | MS.gene013028:intron | 20.0% |
| !!! | ATAACACTATATTTTTGTCT+TGG | - | chr3.3:83739655-83739674 | None:intergenic | 20.0% |
| !!! | TTAAAATTTTAACAGTTGGA+TGG | - | chr3.3:83740028-83740047 | None:intergenic | 20.0% |
| ! | AAGAAAATTGTTGTGAAAAG+AGG | - | chr3.3:83739988-83740007 | None:intergenic | 25.0% |
| ! | AGAAAATTGTTGTGAAAAGA+GGG | - | chr3.3:83739987-83740006 | None:intergenic | 25.0% |
| ! | AGTGATTGGAAAATTATTTG+GGG | - | chr3.3:83739259-83739278 | None:intergenic | 25.0% |
| ! | ATTAAAGAAATTCTTCGTCA+AGG | + | chr3.3:83740189-83740208 | MS.gene013028:CDS | 25.0% |
| ! | ATTTCAACTTAGAAGTTGTA+AGG | - | chr3.3:83739170-83739189 | None:intergenic | 25.0% |
| ! | CAAATGAAATATTGAACCTT+GGG | - | chr3.3:83740575-83740594 | None:intergenic | 25.0% |
| ! | GAAAGACTTGTGAAATATAT+TGG | - | chr3.3:83740700-83740719 | None:intergenic | 25.0% |
| ! | GAAGTGATTGGAAAATTATT+TGG | - | chr3.3:83739261-83739280 | None:intergenic | 25.0% |
| ! | TAATGAGTGTATAAAAGGTA+GGG | + | chr3.3:83739118-83739137 | MS.gene013028:intron | 25.0% |
| ! | TCAAATGAAATATTGAACCT+TGG | - | chr3.3:83740576-83740595 | None:intergenic | 25.0% |
| ! | TGACTGTTAATAAATTGACA+TGG | + | chr3.3:83740101-83740120 | MS.gene013028:intron | 25.0% |
| ! | TGATCATAAATAAAAAAGGG+TGG | - | chr3.3:83740824-83740843 | None:intergenic | 25.0% |
| ! | TTAAAGAAATTCTTCGTCAA+GGG | + | chr3.3:83740190-83740209 | MS.gene013028:CDS | 25.0% |
| ! | TTAATGAGTGTATAAAAGGT+AGG | + | chr3.3:83739117-83739136 | MS.gene013028:intron | 25.0% |
| ! | TTTCAACTTAGAAGTTGTAA+GGG | - | chr3.3:83739169-83739188 | None:intergenic | 25.0% |
| !! | AAAATCATAGTCTTTCGTTT+TGG | - | chr3.3:83740295-83740314 | None:intergenic | 25.0% |
| !! | TTCTTTTGTGAATAGATGTT+TGG | - | chr3.3:83739627-83739646 | None:intergenic | 25.0% |
| !!! | TTTGATGGTTTTAAAGTTCT+TGG | + | chr3.3:83740384-83740403 | MS.gene013028:CDS | 25.0% |
| AATGAGTGTATAAAAGGTAG+GGG | + | chr3.3:83739119-83739138 | MS.gene013028:intron | 30.0% | |
| CAATAGAATGTTGATATGTG+TGG | - | chr3.3:83739301-83739320 | None:intergenic | 30.0% | |
| CACACATATCAACATTCTAT+TGG | + | chr3.3:83739299-83739318 | MS.gene013028:intron | 30.0% | |
| GAAGAAGTTTAGATGATAGA+TGG | - | chr3.3:83739771-83739790 | None:intergenic | 30.0% | |
| GATTGAAGTGTGAAAGATAA+TGG | - | chr3.3:83739474-83739493 | None:intergenic | 30.0% | |
| TACCTTGTTCTTGAAATCAA+CGG | - | chr3.3:83739948-83739967 | None:intergenic | 30.0% | |
| TTATCTTTGCCTTGCTTATA+CGG | - | chr3.3:83740414-83740433 | None:intergenic | 30.0% | |
| TTCAACTTAGAAGTTGTAAG+GGG | - | chr3.3:83739168-83739187 | None:intergenic | 30.0% | |
| TTCATTGAAGTAAACGAAGA+AGG | + | chr3.3:83740717-83740736 | MS.gene013028:CDS | 30.0% | |
| TTCTTCTTGCTGATCATAAA+GGG | - | chr3.3:83740348-83740367 | None:intergenic | 30.0% | |
| ! | CAAACTTCCATTTGTTAAAG+TGG | + | chr3.3:83740530-83740549 | MS.gene013028:CDS | 30.0% |
| ! | CAGTTTATTAGAGCTTTTGA+TGG | + | chr3.3:83740369-83740388 | MS.gene013028:CDS | 30.0% |
| ! | GTTTTACCTTTTACTAATGG+AGG | + | chr3.3:83740633-83740652 | MS.gene013028:CDS | 30.0% |
| ! | TATGATTTTCACCTTCTCAA+TGG | + | chr3.3:83740306-83740325 | MS.gene013028:CDS | 30.0% |
| !! | GTGGTTTTACCTTTTACTAA+TGG | + | chr3.3:83740630-83740649 | MS.gene013028:CDS | 30.0% |
| !! | TTTGGAAGCATCAAACTTAT+TGG | - | chr3.3:83740277-83740296 | None:intergenic | 30.0% |
| AGTAGACACAGTTTCTTTGA+AGG | - | chr3.3:83739903-83739922 | None:intergenic | 35.0% | |
| ATGAGTGTATAAAAGGTAGG+GGG | + | chr3.3:83739120-83739139 | MS.gene013028:intron | 35.0% | |
| ATGATCAGAGAAGATTTGAC+CGG | + | chr3.3:83740837-83740856 | MS.gene013028:CDS | 35.0% | |
| CTGCACTCTTCTTCAATTAA+CGG | - | chr3.3:83739387-83739406 | None:intergenic | 35.0% | |
| CTTCTTCTTGCTGATCATAA+AGG | - | chr3.3:83740349-83740368 | None:intergenic | 35.0% | |
| GCAAATGCACTGTACTTTAA+AGG | + | chr3.3:83740243-83740262 | MS.gene013028:CDS | 35.0% | |
| GTGTTGTATCAACTCAGTTT+CGG | - | chr3.3:83740511-83740530 | None:intergenic | 35.0% | |
| TAATGGAGGTCTGACTAAAA+TGG | + | chr3.3:83740647-83740666 | MS.gene013028:CDS | 35.0% | |
| TGAAACTTCTGATATGCTGA+AGG | + | chr3.3:83740599-83740618 | MS.gene013028:CDS | 35.0% | |
| TTTCTTCCAGATGCTAAAGA+CGG | + | chr3.3:83740456-83740475 | MS.gene013028:CDS | 35.0% | |
| ! | ACTTCCATTTGTTAAAGTGG+AGG | + | chr3.3:83740533-83740552 | MS.gene013028:CDS | 35.0% |
| ! | GAAGTTGTAAGGGGTATAAA+CGG | - | chr3.3:83739159-83739178 | None:intergenic | 35.0% |
| ! | GATAGATGGATTTAAAGCCA+AGG | - | chr3.3:83739757-83739776 | None:intergenic | 35.0% |
| ! | TTCTTTGAAGGAAGGTTGAA+GGG | - | chr3.3:83739891-83739910 | None:intergenic | 35.0% |
| ! | TTTCTTTGAAGGAAGGTTGA+AGG | - | chr3.3:83739892-83739911 | None:intergenic | 35.0% |
| !! | TTCCGTTGATTTCAAGAACA+AGG | + | chr3.3:83739943-83739962 | MS.gene013028:CDS | 35.0% |
| AGAAATTCTTCGTCAAGGGT+CGG | + | chr3.3:83740194-83740213 | MS.gene013028:CDS | 40.0% | |
| CAAAGATGAGTCTGGTTAAG+TGG | - | chr3.3:83740224-83740243 | None:intergenic | 40.0% | |
| CCTACCTCCACTTTAACAAA+TGG | - | chr3.3:83740540-83740559 | None:intergenic | 40.0% | |
| GACGTCATACTAGAAGTGAT+TGG | - | chr3.3:83739273-83739292 | None:intergenic | 40.0% | |
| GCTACAAAGTCTATTCGAGT+TGG | - | chr3.3:83740798-83740817 | None:intergenic | 40.0% | |
| GTCAGACCTCCATTAGTAAA+AGG | - | chr3.3:83740642-83740661 | None:intergenic | 40.0% | |
| TCTCAATGGTAGATCAGTCA+AGG | + | chr3.3:83740320-83740339 | MS.gene013028:CDS | 40.0% | |
| TCTGATATGCTGAAGGAGTT+AGG | + | chr3.3:83740606-83740625 | MS.gene013028:CDS | 40.0% | |
| TGACTGATCTACCATTGAGA+AGG | - | chr3.3:83740320-83740339 | None:intergenic | 40.0% | |
| TGCATTTGCAAAGATGAGTC+TGG | - | chr3.3:83740232-83740251 | None:intergenic | 40.0% | |
| TGTATCAACTCAGTTTCGGA+AGG | - | chr3.3:83740507-83740526 | None:intergenic | 40.0% | |
| TGTGAATAGATGTTTGGCGA+TGG | - | chr3.3:83739621-83739640 | None:intergenic | 40.0% | |
| TTCTTCCAGATGCTAAAGAC+GGG | + | chr3.3:83740457-83740476 | MS.gene013028:CDS | 40.0% | |
| TTGTTCAACCCACACACTAT+TGG | - | chr3.3:83739861-83739880 | None:intergenic | 40.0% | |
| ! | CACTGTACTTTAAAGGAGCA+TGG | + | chr3.3:83740250-83740269 | MS.gene013028:CDS | 40.0% |
| ! | CCATTTGTTAAAGTGGAGGT+AGG | + | chr3.3:83740537-83740556 | MS.gene013028:CDS | 40.0% |
| ! | GACACAGTTTCTTTGAAGGA+AGG | - | chr3.3:83739899-83739918 | None:intergenic | 40.0% |
| ! | GGTTTGGTTAATGGCAGATT+GGG | - | chr3.3:83739585-83739604 | None:intergenic | 40.0% |
| ! | TCTTTGAAGGAAGGTTGAAG+GGG | - | chr3.3:83739890-83739909 | None:intergenic | 40.0% |
| ! | TGGATTTAAAGCCAAGGAAG+TGG | - | chr3.3:83739751-83739770 | None:intergenic | 40.0% |
| !! | GGAAACGTTGGTTTGGTTAA+TGG | - | chr3.3:83739594-83739613 | None:intergenic | 40.0% |
| !! | TATTCGAGTTGGAACAATCC+TGG | - | chr3.3:83740787-83740806 | None:intergenic | 40.0% |
| !! | TGGTTTGGTTAATGGCAGAT+TGG | - | chr3.3:83739586-83739605 | None:intergenic | 40.0% |
| AACTGTCGTCTTTGTTGGAC+AGG | + | chr3.3:83740860-83740879 | MS.gene013028:CDS | 45.0% | |
| AAGCTGACGATGTTCATGTG+TGG | - | chr3.3:83739546-83739565 | None:intergenic | 45.0% | |
| ACACACTATTGGCAACAGAG+AGG | - | chr3.3:83739850-83739869 | None:intergenic | 45.0% | |
| AGCACAACTTGGATTGAGAG+TGG | - | chr3.3:83739680-83739699 | None:intergenic | 45.0% | |
| AGCTGACGATGTTCATGTGT+GGG | - | chr3.3:83739545-83739564 | None:intergenic | 45.0% | |
| ATAGATGTTTGGCGATGGTG+AGG | - | chr3.3:83739616-83739635 | None:intergenic | 45.0% | |
| ATCATAGCTGCTGGATCTCA+GGG | + | chr3.3:83739704-83739723 | MS.gene013028:CDS | 45.0% | |
| CAACAACTTCTCCACTTCCT+TGG | + | chr3.3:83739737-83739756 | MS.gene013028:CDS | 45.0% | |
| CCAGAGAAGATGTTTGGCAA+TGG | - | chr3.3:83739429-83739448 | None:intergenic | 45.0% | |
| CCATTGCCAAACATCTTCTC+TGG | + | chr3.3:83739426-83739445 | MS.gene013028:intron | 45.0% | |
| CTATGATGCTGAGCACAACT+TGG | - | chr3.3:83739691-83739710 | None:intergenic | 45.0% | |
| CTCTGTTGCCAATAGTGTGT+GGG | + | chr3.3:83739850-83739869 | MS.gene013028:CDS | 45.0% | |
| GGTTAATGGCAGATTGGGAT+CGG | - | chr3.3:83739580-83739599 | None:intergenic | 45.0% | |
| TACGAGCCAGAGAAGATGTT+TGG | - | chr3.3:83739435-83739454 | None:intergenic | 45.0% | |
| TAGATGTTTGGCGATGGTGA+GGG | - | chr3.3:83739615-83739634 | None:intergenic | 45.0% | |
| TCCAACAAAGACGACAGTTC+CGG | - | chr3.3:83740859-83740878 | None:intergenic | 45.0% | |
| TCTCTGTTGCCAATAGTGTG+TGG | + | chr3.3:83739849-83739868 | MS.gene013028:CDS | 45.0% | |
| TGGGCTGAGAAAGAGACAAA+TGG | + | chr3.3:83740162-83740181 | MS.gene013028:CDS | 45.0% | |
| ! | CTTGGTCTTCCGTATAAGCA+AGG | + | chr3.3:83740402-83740421 | MS.gene013028:CDS | 45.0% |
| ! | GTGGAGAAGTTGTTGTTGAG+TGG | - | chr3.3:83739732-83739751 | None:intergenic | 45.0% |
| !! | AGTAAACGAAGAAGGCACTG+AGG | + | chr3.3:83740725-83740744 | MS.gene013028:CDS | 45.0% |
| !! | GCAATGGTCATTGATTTGCG+AGG | - | chr3.3:83739413-83739432 | None:intergenic | 45.0% |
| AAGTGGAGGTAGGTGACTTG+AGG | + | chr3.3:83740547-83740566 | MS.gene013028:CDS | 50.0% | |
| ACCGGAACTGTCGTCTTTGT+TGG | + | chr3.3:83740855-83740874 | MS.gene013028:CDS | 50.0% | |
| CATCATAGCTGCTGGATCTC+AGG | + | chr3.3:83739703-83739722 | MS.gene013028:CDS | 50.0% | |
| GAAGGAAGGTTGAAGGGGAA+GGG | - | chr3.3:83739885-83739904 | None:intergenic | 50.0% | |
| GGCAACTTCTCAAGCAACGT+TGG | - | chr3.3:83740486-83740505 | None:intergenic | 50.0% | |
| GTCACTATAGCTGGAGCAGT+CGG | + | chr3.3:83740756-83740775 | MS.gene013028:CDS | 50.0% | |
| TAATGGCAGATTGGGATCGG+AGG | - | chr3.3:83739577-83739596 | None:intergenic | 50.0% | |
| TAGGTGACTTGAGGATCCCA+AGG | + | chr3.3:83740556-83740575 | MS.gene013028:CDS | 50.0% | |
| TATGCTGAAGGAGTTAGGCG+TGG | + | chr3.3:83740611-83740630 | MS.gene013028:CDS | 50.0% | |
| TGAAGGAAGGTTGAAGGGGA+AGG | - | chr3.3:83739886-83739905 | None:intergenic | 50.0% | |
| ! | TGGTGAGGGAAACGTTGGTT+TGG | - | chr3.3:83739601-83739620 | None:intergenic | 50.0% |
| AGCGGCATCAGAGAGGATGA+TGG | - | chr3.3:83739810-83739829 | None:intergenic | 55.0% | |
| CTATTGGCAACAGAGAGGCG+AGG | - | chr3.3:83739845-83739864 | None:intergenic | 55.0% | |
| GGACAGGTGCTCAATCCTCT+TGG | + | chr3.3:83740876-83740895 | MS.gene013028:CDS | 55.0% | |
| GTGCTCAGCATCATAGCTGC+TGG | + | chr3.3:83739695-83739714 | MS.gene013028:CDS | 55.0% | |
| AGAGAGGCGAGGACCACCAA+AGG | - | chr3.3:83739834-83739853 | None:intergenic | 60.0% | |
| CAAAGGGAGCGGCATCAGAG+AGG | - | chr3.3:83739817-83739836 | None:intergenic | 60.0% | |
| CTCTCTGATGCCGCTCCCTT+TGG | + | chr3.3:83739815-83739834 | MS.gene013028:CDS | 60.0% | |
| GAGAGGCGAGGACCACCAAA+GGG | - | chr3.3:83739833-83739852 | None:intergenic | 60.0% | |
| GCTGCTGCGGTCACTATAGC+TGG | + | chr3.3:83740747-83740766 | MS.gene013028:CDS | 60.0% | |
| GGCAGCCCGTCTTTAGCATC+TGG | - | chr3.3:83740465-83740484 | None:intergenic | 60.0% | |
| GGCGATGGTGAGGGAAACGT+TGG | - | chr3.3:83739606-83739625 | None:intergenic | 60.0% | |
| TCTGATGCCGCTCCCTTTGG+TGG | + | chr3.3:83739818-83739837 | MS.gene013028:CDS | 60.0% | |
| !! | AGAAGGCACTGAGGCTGCTG+CGG | + | chr3.3:83740734-83740753 | MS.gene013028:CDS | 60.0% |
| GCGAGGACCACCAAAGGGAG+CGG | - | chr3.3:83739828-83739847 | None:intergenic | 65.0% | |
| CTGGAGCAGTCGGCAGCTCC+AGG | + | chr3.3:83740766-83740785 | MS.gene013028:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83739011 | 83740902 | 83739011 | ID=MS.gene013028 |
| chr3.3 | mRNA | 83739011 | 83740902 | 83739011 | ID=MS.gene013028.t1;Parent=MS.gene013028 |
| chr3.3 | exon | 83739011 | 83739033 | 83739011 | ID=MS.gene013028.t1.exon1;Parent=MS.gene013028.t1 |
| chr3.3 | CDS | 83739011 | 83739033 | 83739011 | ID=cds.MS.gene013028.t1;Parent=MS.gene013028.t1 |
| chr3.3 | exon | 83739520 | 83739964 | 83739520 | ID=MS.gene013028.t1.exon2;Parent=MS.gene013028.t1 |
| chr3.3 | CDS | 83739520 | 83739964 | 83739520 | ID=cds.MS.gene013028.t1;Parent=MS.gene013028.t1 |
| chr3.3 | exon | 83740132 | 83740902 | 83740132 | ID=MS.gene013028.t1.exon3;Parent=MS.gene013028.t1 |
| chr3.3 | CDS | 83740132 | 83740902 | 83740132 | ID=cds.MS.gene013028.t1;Parent=MS.gene013028.t1 |
| Gene Sequence |
| Protein sequence |
