Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013030.t1 | RHN70239.1 | 86.6 | 439 | 37 | 3 | 27 | 444 | 1 | 438 | 1.50E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013030.t1 | Q9S7T8 | 53.3 | 381 | 173 | 3 | 66 | 442 | 11 | 390 | 3.1e-115 | 416.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013030.t1 | A0A396IX06 | 86.6 | 439 | 37 | 3 | 27 | 444 | 1 | 438 | 1.1e-206 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene013030 | PPI |
| MS.gene013030 | MS.gene065944 | PPI |
| MS.gene013030 | MS.gene031697 | PPI |
| MS.gene006610 | MS.gene013030 | PPI |
| MS.gene013030 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013030.t1 | MTR_3g101030 | 87.209 | 430 | 36 | 3 | 33 | 444 | 1 | 429 | 0.0 | 749 |
| MS.gene013030.t1 | MTR_3g101010 | 77.749 | 391 | 81 | 3 | 56 | 444 | 3 | 389 | 0.0 | 586 |
| MS.gene013030.t1 | MTR_3g018740 | 70.543 | 387 | 106 | 4 | 59 | 442 | 5 | 386 | 0.0 | 533 |
| MS.gene013030.t1 | MTR_3g101050 | 72.040 | 397 | 88 | 8 | 52 | 443 | 19 | 397 | 0.0 | 527 |
| MS.gene013030.t1 | MTR_4g045707 | 69.634 | 382 | 110 | 4 | 65 | 444 | 11 | 388 | 0.0 | 523 |
| MS.gene013030.t1 | MTR_8g027395 | 65.915 | 399 | 126 | 4 | 48 | 444 | 7 | 397 | 0.0 | 515 |
| MS.gene013030.t1 | MTR_8g461160 | 64.872 | 390 | 132 | 3 | 57 | 442 | 4 | 392 | 1.04e-175 | 497 |
| MS.gene013030.t1 | MTR_3g101180 | 64.232 | 397 | 131 | 5 | 56 | 442 | 3 | 398 | 3.55e-174 | 493 |
| MS.gene013030.t1 | MTR_8g027420 | 65.206 | 388 | 115 | 5 | 59 | 444 | 6 | 375 | 1.01e-172 | 489 |
| MS.gene013030.t1 | MTR_7g451890 | 62.663 | 383 | 139 | 2 | 66 | 444 | 20 | 402 | 1.15e-172 | 490 |
| MS.gene013030.t1 | MTR_7g047780 | 63.446 | 383 | 136 | 2 | 66 | 444 | 20 | 402 | 6.83e-171 | 485 |
| MS.gene013030.t1 | MTR_3g048000 | 64.136 | 382 | 112 | 6 | 64 | 442 | 31 | 390 | 6.69e-168 | 477 |
| MS.gene013030.t1 | MTR_4g088525 | 65.668 | 367 | 118 | 3 | 79 | 443 | 8 | 368 | 4.45e-167 | 474 |
| MS.gene013030.t1 | MTR_7g050750 | 61.619 | 383 | 143 | 2 | 66 | 444 | 14 | 396 | 1.29e-166 | 474 |
| MS.gene013030.t1 | MTR_7g050810 | 62.078 | 385 | 138 | 3 | 66 | 444 | 22 | 404 | 3.01e-166 | 474 |
| MS.gene013030.t1 | MTR_3g101130 | 61.804 | 377 | 141 | 2 | 69 | 444 | 15 | 389 | 9.51e-165 | 469 |
| MS.gene013030.t1 | MTR_2g046030 | 63.333 | 390 | 129 | 7 | 59 | 442 | 5 | 386 | 2.82e-162 | 463 |
| MS.gene013030.t1 | MTR_2g045980 | 63.590 | 390 | 128 | 7 | 59 | 442 | 5 | 386 | 1.13e-161 | 461 |
| MS.gene013030.t1 | MTR_4g088535 | 63.636 | 385 | 115 | 6 | 57 | 439 | 5 | 366 | 1.92e-161 | 461 |
| MS.gene013030.t1 | MTR_3g015620 | 62.113 | 388 | 118 | 6 | 59 | 442 | 16 | 378 | 8.04e-151 | 433 |
| MS.gene013030.t1 | MTR_3g102920 | 57.784 | 379 | 120 | 5 | 68 | 442 | 66 | 408 | 1.77e-138 | 403 |
| MS.gene013030.t1 | MTR_3g100995 | 72.941 | 255 | 68 | 1 | 190 | 444 | 11 | 264 | 3.18e-136 | 392 |
| MS.gene013030.t1 | MTR_3g101200 | 52.911 | 395 | 157 | 5 | 50 | 442 | 23 | 390 | 8.70e-131 | 383 |
| MS.gene013030.t1 | MTR_3g101190 | 53.425 | 365 | 101 | 4 | 84 | 444 | 13 | 312 | 3.41e-123 | 360 |
| MS.gene013030.t1 | MTR_3g018747 | 69.615 | 260 | 61 | 3 | 186 | 442 | 9 | 253 | 6.42e-122 | 355 |
| MS.gene013030.t1 | MTR_7g050830 | 56.169 | 308 | 104 | 2 | 66 | 353 | 22 | 318 | 3.88e-113 | 335 |
| MS.gene013030.t1 | MTR_3g100010 | 55.937 | 320 | 93 | 2 | 85 | 371 | 40 | 344 | 1.26e-112 | 335 |
| MS.gene013030.t1 | MTR_3g015760 | 62.782 | 266 | 97 | 2 | 178 | 442 | 15 | 279 | 1.89e-105 | 314 |
| MS.gene013030.t1 | MTR_3g111160 | 68.095 | 210 | 62 | 2 | 238 | 444 | 13 | 220 | 1.15e-91 | 277 |
| MS.gene013030.t1 | MTR_3g100520 | 59.910 | 222 | 72 | 3 | 227 | 444 | 1 | 209 | 4.85e-87 | 265 |
| MS.gene013030.t1 | MTR_3g099970 | 66.154 | 195 | 49 | 2 | 186 | 379 | 20 | 198 | 3.99e-84 | 256 |
| MS.gene013030.t1 | MTR_3g114310 | 40.648 | 401 | 211 | 12 | 61 | 444 | 20 | 410 | 1.60e-83 | 263 |
| MS.gene013030.t1 | MTR_3g101110 | 58.475 | 236 | 66 | 4 | 189 | 418 | 71 | 280 | 1.62e-81 | 253 |
| MS.gene013030.t1 | MTR_2g046410 | 62.621 | 206 | 69 | 4 | 243 | 442 | 144 | 347 | 2.61e-79 | 249 |
| MS.gene013030.t1 | MTR_3g101020 | 64.324 | 185 | 41 | 2 | 260 | 444 | 1 | 160 | 6.12e-76 | 234 |
| MS.gene013030.t1 | MTR_3g111150 | 59.322 | 177 | 46 | 2 | 64 | 240 | 3 | 153 | 5.59e-61 | 196 |
| MS.gene013030.t1 | MTR_3g101150 | 61.392 | 158 | 55 | 2 | 292 | 443 | 1 | 158 | 4.14e-59 | 191 |
| MS.gene013030.t1 | MTR_3g102870 | 57.233 | 159 | 66 | 1 | 251 | 407 | 3 | 161 | 5.70e-56 | 183 |
| MS.gene013030.t1 | MTR_3g100990 | 64.844 | 128 | 42 | 2 | 59 | 186 | 5 | 129 | 9.63e-44 | 160 |
| MS.gene013030.t1 | MTR_4g093550 | 62.353 | 85 | 30 | 1 | 61 | 145 | 7 | 89 | 3.05e-25 | 99.4 |
| MS.gene013030.t1 | MTR_6g046890 | 61.842 | 76 | 26 | 1 | 78 | 153 | 15 | 87 | 4.13e-19 | 84.0 |
| MS.gene013030.t1 | MTR_3g101140 | 64.615 | 65 | 22 | 1 | 381 | 444 | 52 | 116 | 3.64e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013030.t1 | AT1G47710 | 51.980 | 404 | 186 | 4 | 43 | 442 | 18 | 417 | 1.14e-147 | 427 |
| MS.gene013030.t1 | AT1G47710 | 53.141 | 382 | 174 | 3 | 65 | 442 | 10 | 390 | 2.60e-147 | 425 |
| MS.gene013030.t1 | AT3G45220 | 47.558 | 389 | 186 | 6 | 64 | 441 | 9 | 390 | 1.17e-121 | 360 |
| MS.gene013030.t1 | AT2G25240 | 48.438 | 384 | 182 | 7 | 64 | 441 | 9 | 382 | 1.71e-117 | 349 |
| MS.gene013030.t1 | AT2G26390 | 46.770 | 387 | 188 | 6 | 64 | 441 | 9 | 386 | 5.36e-114 | 340 |
| MS.gene013030.t1 | AT2G14540 | 44.118 | 408 | 196 | 7 | 40 | 441 | 16 | 397 | 3.52e-102 | 310 |
| MS.gene013030.t1 | AT1G62170 | 44.565 | 368 | 175 | 5 | 83 | 443 | 88 | 433 | 6.04e-102 | 311 |
| MS.gene013030.t1 | AT1G64030 | 43.411 | 387 | 192 | 7 | 61 | 441 | 6 | 371 | 3.35e-97 | 297 |
| MS.gene013030.t1 | AT2G35580 | 45.187 | 374 | 174 | 10 | 79 | 441 | 18 | 371 | 1.01e-96 | 295 |
| MS.gene013030.t1 | AT1G62170 | 40.898 | 401 | 175 | 6 | 83 | 443 | 88 | 466 | 4.88e-95 | 294 |
| MS.gene013030.t1 | AT1G64010 | 47.222 | 216 | 92 | 4 | 227 | 441 | 1 | 195 | 4.10e-63 | 202 |
| MS.gene013030.t1 | AT1G64010 | 46.766 | 201 | 85 | 4 | 242 | 441 | 2 | 181 | 3.45e-56 | 184 |
| MS.gene013030.t1 | AT1G62160 | 41.209 | 182 | 84 | 4 | 264 | 443 | 60 | 220 | 1.78e-36 | 134 |
| MS.gene013030.t1 | AT1G63280 | 57.391 | 115 | 45 | 2 | 186 | 298 | 8 | 120 | 3.30e-36 | 129 |
| MS.gene013030.t1 | AT1G51330 | 51.351 | 111 | 51 | 2 | 185 | 292 | 30 | 140 | 2.92e-26 | 105 |
| MS.gene013030.t1 | AT1G64020 | 31.707 | 123 | 81 | 3 | 56 | 177 | 1 | 121 | 3.50e-15 | 72.4 |
Find 94 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAACTTTGCTTGAGAAAT+TGG | 0.152643 | 3.3:+83710223 | MS.gene013030:CDS |
| ATTAGACACAATTTGTTTAA+AGG | 0.202108 | 3.3:-83709668 | None:intergenic |
| TGGCCAAAGAAGTTAATTTA+TGG | 0.206086 | 3.3:+83709883 | MS.gene013030:CDS |
| CTTGTTCCGGTGAGATTCTT+TGG | 0.228600 | 3.3:-83709407 | None:intergenic |
| AGCCCATAAATTAACTTCTT+TGG | 0.247412 | 3.3:-83709886 | None:intergenic |
| TTATCTTCGCCTTGCTTATA+AGG | 0.250540 | 3.3:-83710152 | None:intergenic |
| CCAAGGTTCAATATTTCATT+TGG | 0.296966 | 3.3:+83710314 | MS.gene013030:CDS |
| CAGGTGCTCAATCCTCTTGC+TGG | 0.306550 | 3.3:+83710623 | MS.gene013030:CDS |
| TGCGGTGGCTGCAACAGCTT+CGG | 0.337942 | 3.3:-83710483 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.344851 | 3.3:+83710197 | MS.gene013030:CDS |
| TTCTTTGGAGAAAAGATGTT+TGG | 0.357142 | 3.3:-83709392 | None:intergenic |
| GGCCAAAGAAGTTAATTTAT+GGG | 0.357206 | 3.3:+83709884 | MS.gene013030:CDS |
| CAATGGAGGTCTGACTAAAA+TGG | 0.358287 | 3.3:+83710388 | MS.gene013030:CDS |
| GAGTGGAAGTAGGCGACTTT+AGG | 0.364214 | 3.3:+83710288 | MS.gene013030:CDS |
| ATGGTGGTTGTTGGCGGATT+CGG | 0.388527 | 3.3:-83709347 | None:intergenic |
| ACTGGAACAATCATCTTTGT+TGG | 0.397026 | 3.3:+83710599 | MS.gene013030:CDS |
| GCCAATTTCTCAAGCAAAGT+TGG | 0.399047 | 3.3:-83710224 | None:intergenic |
| ATATCGCTCGGAGTTGTATT+CGG | 0.407795 | 3.3:-83709277 | None:intergenic |
| AAAGGAAGGCTGAAGAGAAA+TGG | 0.417918 | 3.3:-83709650 | None:intergenic |
| GATGTTGAGTGGGATCGATT+TGG | 0.424463 | 3.3:-83709300 | None:intergenic |
| AATGACGGAGACGAGCTTAG+AGG | 0.426551 | 3.3:-83709560 | None:intergenic |
| CAAATGAAATATTGAACCTT+GGG | 0.426942 | 3.3:-83710313 | None:intergenic |
| ATAACACGATGTTCTTGTTC+CGG | 0.429260 | 3.3:-83709420 | None:intergenic |
| AACAATCATCTTTGTTGGAC+AGG | 0.442686 | 3.3:+83710604 | MS.gene013030:CDS |
| TCTCTAATCATAAACAAGAA+AGG | 0.443816 | 3.3:-83710569 | None:intergenic |
| TTTATTGACGTAAATGAAGA+AGG | 0.449783 | 3.3:+83710458 | MS.gene013030:CDS |
| AACGCTGCTATGGTGGTTGT+TGG | 0.459988 | 3.3:-83709356 | None:intergenic |
| GTTGAGTTGATCGGTGGAGT+TGG | 0.460115 | 3.3:-83709530 | None:intergenic |
| CTCTAATCATAAACAAGAAA+GGG | 0.468439 | 3.3:-83710568 | None:intergenic |
| GTTGATCGGTGGAGTTGGAT+TGG | 0.478007 | 3.3:-83709525 | None:intergenic |
| CTCAAAGACGGTGCTCCCGC+TGG | 0.478601 | 3.3:+83709583 | MS.gene013030:CDS |
| ATGATTAGAGAAGAATTGAC+TGG | 0.486911 | 3.3:+83710581 | MS.gene013030:CDS |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.486946 | 3.3:+83710198 | MS.gene013030:CDS |
| CAATGATGCTTAGTACAACT+TGG | 0.487843 | 3.3:-83709456 | None:intergenic |
| TTCTTCCTTACGAGTCATGA+AGG | 0.493936 | 3.3:-83710087 | None:intergenic |
| CTTCGCCTTGCTTATAAGGA+AGG | 0.494680 | 3.3:-83710148 | None:intergenic |
| AACGAAGAGCGTGAAGTAGC+AGG | 0.496618 | 3.3:-83709206 | None:intergenic |
| GACACAATTTGTTTAAAGGA+AGG | 0.503508 | 3.3:-83709664 | None:intergenic |
| AGGTGCTCAATCCTCTTGCT+GGG | 0.503743 | 3.3:+83710624 | MS.gene013030:CDS |
| GTACTAAGCATCATTGCTGC+TGG | 0.503878 | 3.3:+83709463 | MS.gene013030:CDS |
| GATCGGTGGAGTTGGATTGG+AGG | 0.508691 | 3.3:-83709522 | None:intergenic |
| TGCATTAGCAATGATTAGCC+TGG | 0.510550 | 3.3:-83709970 | None:intergenic |
| CCAAATGAAATATTGAACCT+TGG | 0.513068 | 3.3:-83710314 | None:intergenic |
| AAAGATGTTTGGCGATGGTG+AGG | 0.524270 | 3.3:-83709381 | None:intergenic |
| GGAGACGAGCTTAGAGGCGA+AGG | 0.528835 | 3.3:-83709554 | None:intergenic |
| GCTGCTATGGTGGTTGTTGG+CGG | 0.529517 | 3.3:-83709353 | None:intergenic |
| GCTACAAAGTCTAGTCGAGT+TGG | 0.531637 | 3.3:-83710539 | None:intergenic |
| CTTGGCCTTCCTTATAAGCA+AGG | 0.532609 | 3.3:+83710143 | MS.gene013030:CDS |
| AGTACAACTTGGAGCGAAAG+TGG | 0.534886 | 3.3:-83709445 | None:intergenic |
| GAGAGACGAGGTCCTCCAGC+GGG | 0.535745 | 3.3:-83709598 | None:intergenic |
| TTCTGTTGATTTCAAGAACA+AGG | 0.539763 | 3.3:+83709711 | MS.gene013030:CDS |
| TGTTCCCTTCATGACTCGTA+AGG | 0.541335 | 3.3:+83710082 | MS.gene013030:CDS |
| TCTGATATGCTGAAGGAGCT+AGG | 0.542423 | 3.3:+83710347 | MS.gene013030:CDS |
| CACTATACTTCAAAGGAATG+TGG | 0.548921 | 3.3:+83709991 | MS.gene013030:CDS |
| TGGGCTGCAAAAGAGACAAA+TGG | 0.552308 | 3.3:+83709903 | MS.gene013030:CDS |
| ATCATTGCTGCTGGTTCTGA+CGG | 0.554070 | 3.3:+83709472 | MS.gene013030:CDS |
| AAGTAGCAGGCAAGGTCGAT+TGG | 0.554084 | 3.3:-83709193 | None:intergenic |
| TTAAAGAACTTCTTCCTCCA+CGG | 0.555249 | 3.3:+83709931 | MS.gene013030:CDS |
| GCTAATGCACTATACTTCAA+AGG | 0.558208 | 3.3:+83709984 | MS.gene013030:CDS |
| CGCTAAAATCACCCAGCAAG+AGG | 0.568564 | 3.3:-83710635 | None:intergenic |
| GAGAAGCTGCTGATGTTGAG+TGG | 0.568947 | 3.3:-83709311 | None:intergenic |
| GTCAGACCTCCATTGGTGAA+AGG | 0.571927 | 3.3:-83710380 | None:intergenic |
| TGGTGAGGGAAACGCTGCTA+TGG | 0.575851 | 3.3:-83709366 | None:intergenic |
| AGAGCGTGAAGTAGCAGGCA+AGG | 0.577102 | 3.3:-83709201 | None:intergenic |
| TGTTGGCGGATTCGGATCGA+AGG | 0.581182 | 3.3:-83709339 | None:intergenic |
| AAAGACGGTGCTCCCGCTGG+AGG | 0.583396 | 3.3:+83709586 | MS.gene013030:CDS |
| GTCTCCGTCATTCTCAAAGA+CGG | 0.586205 | 3.3:+83709571 | MS.gene013030:CDS |
| AAGATGTTTGGCGATGGTGA+GGG | 0.596429 | 3.3:-83709380 | None:intergenic |
| CCACATGATAGAGTGGAAGT+AGG | 0.598991 | 3.3:+83710278 | MS.gene013030:CDS |
| TAGTCGAGTTGGAAAACTCA+TGG | 0.599825 | 3.3:-83710528 | None:intergenic |
| GGCGAAGGAGTTGAGTTGAT+CGG | 0.602516 | 3.3:-83709539 | None:intergenic |
| TAGGCGACTTTAGGATCCCA+AGG | 0.602547 | 3.3:+83710297 | MS.gene013030:CDS |
| TGAAACTTCTGATATGCTGA+AGG | 0.602682 | 3.3:+83710340 | MS.gene013030:CDS |
| AGTGATTACTTCAGCTGCGG+TGG | 0.607613 | 3.3:-83710498 | None:intergenic |
| GTCAAGAAGCTGTTGTTGTG+TGG | 0.616691 | 3.3:-83709497 | None:intergenic |
| AGAAGCTGCTGATGTTGAGT+GGG | 0.617202 | 3.3:-83709310 | None:intergenic |
| GGATCGATTTGGATATCGCT+CGG | 0.618610 | 3.3:-83709289 | None:intergenic |
| TCTTCCTTACGAGTCATGAA+GGG | 0.620041 | 3.3:-83710086 | None:intergenic |
| AGAACTTCTTCCTCCACGGT+CGG | 0.622745 | 3.3:+83709935 | MS.gene013030:CDS |
| AGAGAGACGAGGTCCTCCAG+CGG | 0.627432 | 3.3:-83709599 | None:intergenic |
| CAAGCTTCCACATGATAGAG+TGG | 0.627897 | 3.3:+83710271 | MS.gene013030:CDS |
| GGTTTGAAAGGCAAGTGAAG+TGG | 0.629370 | 3.3:+83709863 | MS.gene013030:intron |
| GTTAAGCTGTTAACCGACCG+TGG | 0.638349 | 3.3:-83709948 | None:intergenic |
| TAATCATAAACAAGAAAGGG+TGG | 0.640706 | 3.3:-83710565 | None:intergenic |
| GGTCGGTTAACAGCTTAACC+AGG | 0.645456 | 3.3:+83709952 | MS.gene013030:CDS |
| TGAGGGAAACGCTGCTATGG+TGG | 0.653513 | 3.3:-83709363 | None:intergenic |
| CCTACTTCCACTCTATCATG+TGG | 0.655871 | 3.3:-83710278 | None:intergenic |
| GGAGAAAAGATGTTTGGCGA+TGG | 0.656877 | 3.3:-83709386 | None:intergenic |
| GCTAGTGATTACTTCAGCTG+CGG | 0.657209 | 3.3:-83710501 | None:intergenic |
| AGCACCGTCTTTGAGAATGA+CGG | 0.659705 | 3.3:-83709575 | None:intergenic |
| TATGCTGAAGGAGCTAGGCG+TGG | 0.693931 | 3.3:+83710352 | MS.gene013030:CDS |
| GAAGGAGTTGAGTTGATCGG+TGG | 0.698626 | 3.3:-83709536 | None:intergenic |
| CCATCGACAAAAGAGAGACG+AGG | 0.708769 | 3.3:-83709610 | None:intergenic |
| AAGCTGTTAACCGACCGTGG+AGG | 0.782630 | 3.3:-83709945 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTGAATTTTGATA+TGG | + | chr3.3:83709842-83709861 | MS.gene013030:intron | 15.0% |
| !!! | ATTAGACACAATTTGTTTAA+AGG | - | chr3.3:83709671-83709690 | None:intergenic | 20.0% |
| !!! | GAATGATTTTAGAAATACAT+AGG | - | chr3.3:83710430-83710449 | None:intergenic | 20.0% |
| !!! | TATGATTTTCATCTTTTGAA+TGG | + | chr3.3:83710047-83710066 | MS.gene013030:CDS | 20.0% |
| ! | CAAATGAAATATTGAACCTT+GGG | - | chr3.3:83710316-83710335 | None:intergenic | 25.0% |
| ! | CTCTAATCATAAACAAGAAA+GGG | - | chr3.3:83710571-83710590 | None:intergenic | 25.0% |
| ! | TCTCTAATCATAAACAAGAA+AGG | - | chr3.3:83710572-83710591 | None:intergenic | 25.0% |
| ! | TTTATTGACGTAAATGAAGA+AGG | + | chr3.3:83710458-83710477 | MS.gene013030:CDS | 25.0% |
| !!! | GAATTTTGATATGGTTTGAA+AGG | + | chr3.3:83709851-83709870 | MS.gene013030:intron | 25.0% |
| !!! | TTCGATGATTTTAAAGTTCT+TGG | + | chr3.3:83710125-83710144 | MS.gene013030:CDS | 25.0% |
| AGCCCATAAATTAACTTCTT+TGG | - | chr3.3:83709889-83709908 | None:intergenic | 30.0% | |
| ATGATTAGAGAAGAATTGAC+TGG | + | chr3.3:83710581-83710600 | MS.gene013030:CDS | 30.0% | |
| CCAAATGAAATATTGAACCT+TGG | - | chr3.3:83710317-83710336 | None:intergenic | 30.0% | |
| CCAAGGTTCAATATTTCATT+TGG | + | chr3.3:83710314-83710333 | MS.gene013030:CDS | 30.0% | |
| GGCCAAAGAAGTTAATTTAT+GGG | + | chr3.3:83709884-83709903 | MS.gene013030:CDS | 30.0% | |
| TAATCATAAACAAGAAAGGG+TGG | - | chr3.3:83710568-83710587 | None:intergenic | 30.0% | |
| TGGCCAAAGAAGTTAATTTA+TGG | + | chr3.3:83709883-83709902 | MS.gene013030:CDS | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.3:83710198-83710217 | MS.gene013030:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.3:83710197-83710216 | MS.gene013030:CDS | 30.0% | |
| ! | GACACAATTTGTTTAAAGGA+AGG | - | chr3.3:83709667-83709686 | None:intergenic | 30.0% |
| ! | GTATTCGGTATCATGATTTT+TGG | - | chr3.3:83709265-83709284 | None:intergenic | 30.0% |
| ! | TCATCTTTTGAATGGAAACT+CGG | + | chr3.3:83710055-83710074 | MS.gene013030:CDS | 30.0% |
| ! | TTCTTTGGAGAAAAGATGTT+TGG | - | chr3.3:83709395-83709414 | None:intergenic | 30.0% |
| !! | TTCTGTTGATTTCAAGAACA+AGG | + | chr3.3:83709711-83709730 | MS.gene013030:CDS | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.3:83710604-83710623 | MS.gene013030:CDS | 35.0% | |
| ACTGGAACAATCATCTTTGT+TGG | + | chr3.3:83710599-83710618 | MS.gene013030:CDS | 35.0% | |
| ATAACACGATGTTCTTGTTC+CGG | - | chr3.3:83709423-83709442 | None:intergenic | 35.0% | |
| CAATGATGCTTAGTACAACT+TGG | - | chr3.3:83709459-83709478 | None:intergenic | 35.0% | |
| CACTATACTTCAAAGGAATG+TGG | + | chr3.3:83709991-83710010 | MS.gene013030:CDS | 35.0% | |
| GCTAATGCACTATACTTCAA+AGG | + | chr3.3:83709984-83710003 | MS.gene013030:CDS | 35.0% | |
| TGAAACTTCTGATATGCTGA+AGG | + | chr3.3:83710340-83710359 | MS.gene013030:CDS | 35.0% | |
| TTAAAGAACTTCTTCCTCCA+CGG | + | chr3.3:83709931-83709950 | MS.gene013030:CDS | 35.0% | |
| TTATCTTCGCCTTGCTTATA+AGG | - | chr3.3:83710155-83710174 | None:intergenic | 35.0% | |
| ! | TTTTCTCCAAAGAATCTCAC+CGG | + | chr3.3:83709401-83709420 | MS.gene013030:CDS | 35.0% |
| AAAGGAAGGCTGAAGAGAAA+TGG | - | chr3.3:83709653-83709672 | None:intergenic | 40.0% | |
| ATATCGCTCGGAGTTGTATT+CGG | - | chr3.3:83709280-83709299 | None:intergenic | 40.0% | |
| CAATGGAGGTCTGACTAAAA+TGG | + | chr3.3:83710388-83710407 | MS.gene013030:CDS | 40.0% | |
| GCCAACTTTGCTTGAGAAAT+TGG | + | chr3.3:83710223-83710242 | MS.gene013030:CDS | 40.0% | |
| GCCAATTTCTCAAGCAAAGT+TGG | - | chr3.3:83710227-83710246 | None:intergenic | 40.0% | |
| TCTTCCTTACGAGTCATGAA+GGG | - | chr3.3:83710089-83710108 | None:intergenic | 40.0% | |
| TTCTTCCTTACGAGTCATGA+AGG | - | chr3.3:83710090-83710109 | None:intergenic | 40.0% | |
| ! | GTTTTACCTTTCACCAATGG+AGG | + | chr3.3:83710374-83710393 | MS.gene013030:CDS | 40.0% |
| ! | TGCATTAGCAATGATTAGCC+TGG | - | chr3.3:83709973-83709992 | None:intergenic | 40.0% |
| !! | CATTTTAGTCAGACCTCCAT+TGG | - | chr3.3:83710390-83710409 | None:intergenic | 40.0% |
| !! | GTGGTTTTACCTTTCACCAA+TGG | + | chr3.3:83710371-83710390 | MS.gene013030:CDS | 40.0% |
| !! | TAGTCGAGTTGGAAAACTCA+TGG | - | chr3.3:83710531-83710550 | None:intergenic | 40.0% |
| AAAGATGTTTGGCGATGGTG+AGG | - | chr3.3:83709384-83709403 | None:intergenic | 45.0% | |
| AAGATGTTTGGCGATGGTGA+GGG | - | chr3.3:83709383-83709402 | None:intergenic | 45.0% | |
| AGAAGCTGCTGATGTTGAGT+GGG | - | chr3.3:83709313-83709332 | None:intergenic | 45.0% | |
| AGTACAACTTGGAGCGAAAG+TGG | - | chr3.3:83709448-83709467 | None:intergenic | 45.0% | |
| CAAGCTTCCACATGATAGAG+TGG | + | chr3.3:83710271-83710290 | MS.gene013030:CDS | 45.0% | |
| CCACATGATAGAGTGGAAGT+AGG | + | chr3.3:83710278-83710297 | MS.gene013030:CDS | 45.0% | |
| CCTACTTCCACTCTATCATG+TGG | - | chr3.3:83710281-83710300 | None:intergenic | 45.0% | |
| CTTCGCCTTGCTTATAAGGA+AGG | - | chr3.3:83710151-83710170 | None:intergenic | 45.0% | |
| CTTGTTCCGGTGAGATTCTT+TGG | - | chr3.3:83709410-83709429 | None:intergenic | 45.0% | |
| GATGTTGAGTGGGATCGATT+TGG | - | chr3.3:83709303-83709322 | None:intergenic | 45.0% | |
| GCTACAAAGTCTAGTCGAGT+TGG | - | chr3.3:83710542-83710561 | None:intergenic | 45.0% | |
| GCTAGTGATTACTTCAGCTG+CGG | - | chr3.3:83710504-83710523 | None:intergenic | 45.0% | |
| GGAGAAAAGATGTTTGGCGA+TGG | - | chr3.3:83709389-83709408 | None:intergenic | 45.0% | |
| GGTTTGAAAGGCAAGTGAAG+TGG | + | chr3.3:83709863-83709882 | MS.gene013030:intron | 45.0% | |
| GTACTAAGCATCATTGCTGC+TGG | + | chr3.3:83709463-83709482 | MS.gene013030:CDS | 45.0% | |
| GTCAAGAAGCTGTTGTTGTG+TGG | - | chr3.3:83709500-83709519 | None:intergenic | 45.0% | |
| GTCTCCGTCATTCTCAAAGA+CGG | + | chr3.3:83709571-83709590 | MS.gene013030:CDS | 45.0% | |
| TCTGATATGCTGAAGGAGCT+AGG | + | chr3.3:83710347-83710366 | MS.gene013030:CDS | 45.0% | |
| TGGGCTGCAAAAGAGACAAA+TGG | + | chr3.3:83709903-83709922 | MS.gene013030:CDS | 45.0% | |
| TGTTCCCTTCATGACTCGTA+AGG | + | chr3.3:83710082-83710101 | MS.gene013030:CDS | 45.0% | |
| ! | AGCACCGTCTTTGAGAATGA+CGG | - | chr3.3:83709578-83709597 | None:intergenic | 45.0% |
| ! | CTCTTTTGTCGATGGTGTGT+GGG | + | chr3.3:83709618-83709637 | MS.gene013030:CDS | 45.0% |
| ! | CTTGGCCTTCCTTATAAGCA+AGG | + | chr3.3:83710143-83710162 | MS.gene013030:CDS | 45.0% |
| ! | TCTCTTTTGTCGATGGTGTG+TGG | + | chr3.3:83709617-83709636 | MS.gene013030:CDS | 45.0% |
| !! | ATCATTGCTGCTGGTTCTGA+CGG | + | chr3.3:83709472-83709491 | MS.gene013030:CDS | 45.0% |
| !! | GGATCGATTTGGATATCGCT+CGG | - | chr3.3:83709292-83709311 | None:intergenic | 45.0% |
| AACGCTGCTATGGTGGTTGT+TGG | - | chr3.3:83709359-83709378 | None:intergenic | 50.0% | |
| AAGTAGCAGGCAAGGTCGAT+TGG | - | chr3.3:83709196-83709215 | None:intergenic | 50.0% | |
| AGAACTTCTTCCTCCACGGT+CGG | + | chr3.3:83709935-83709954 | MS.gene013030:CDS | 50.0% | |
| AGGTGCTCAATCCTCTTGCT+GGG | + | chr3.3:83710624-83710643 | MS.gene013030:CDS | 50.0% | |
| AGTGATTACTTCAGCTGCGG+TGG | - | chr3.3:83710501-83710520 | None:intergenic | 50.0% | |
| CCATCGACAAAAGAGAGACG+AGG | - | chr3.3:83709613-83709632 | None:intergenic | 50.0% | |
| GAGAAGCTGCTGATGTTGAG+TGG | - | chr3.3:83709314-83709333 | None:intergenic | 50.0% | |
| GAGTGGAAGTAGGCGACTTT+AGG | + | chr3.3:83710288-83710307 | MS.gene013030:CDS | 50.0% | |
| GGTCGGTTAACAGCTTAACC+AGG | + | chr3.3:83709952-83709971 | MS.gene013030:CDS | 50.0% | |
| GTCAGACCTCCATTGGTGAA+AGG | - | chr3.3:83710383-83710402 | None:intergenic | 50.0% | |
| GTTAAGCTGTTAACCGACCG+TGG | - | chr3.3:83709951-83709970 | None:intergenic | 50.0% | |
| GTTGATCGGTGGAGTTGGAT+TGG | - | chr3.3:83709528-83709547 | None:intergenic | 50.0% | |
| ! | AACGAAGAGCGTGAAGTAGC+AGG | - | chr3.3:83709209-83709228 | None:intergenic | 50.0% |
| ! | AATGACGGAGACGAGCTTAG+AGG | - | chr3.3:83709563-83709582 | None:intergenic | 50.0% |
| ! | CCTCGTCTCTCTTTTGTCGA+TGG | + | chr3.3:83709610-83709629 | MS.gene013030:CDS | 50.0% |
| ! | GGCAGCCCATCTTTTGCATT+TGG | - | chr3.3:83710206-83710225 | None:intergenic | 50.0% |
| ! | TTTTGTCGATGGTGTGTGGG+TGG | + | chr3.3:83709621-83709640 | MS.gene013030:CDS | 50.0% |
| !! | ATGGTGGTTGTTGGCGGATT+CGG | - | chr3.3:83709350-83709369 | None:intergenic | 50.0% |
| !! | GAAGGAGTTGAGTTGATCGG+TGG | - | chr3.3:83709539-83709558 | None:intergenic | 50.0% |
| !! | GGCGAAGGAGTTGAGTTGAT+CGG | - | chr3.3:83709542-83709561 | None:intergenic | 50.0% |
| !! | GTTGAGTTGATCGGTGGAGT+TGG | - | chr3.3:83709533-83709552 | None:intergenic | 50.0% |
| !! | TAGGCGACTTTAGGATCCCA+AGG | + | chr3.3:83710297-83710316 | MS.gene013030:CDS | 50.0% |
| AAGCTGTTAACCGACCGTGG+AGG | - | chr3.3:83709948-83709967 | None:intergenic | 55.0% | |
| AGAGCGTGAAGTAGCAGGCA+AGG | - | chr3.3:83709204-83709223 | None:intergenic | 55.0% | |
| CAGGTGCTCAATCCTCTTGC+TGG | + | chr3.3:83710623-83710642 | MS.gene013030:CDS | 55.0% | |
| GCTGCTATGGTGGTTGTTGG+CGG | - | chr3.3:83709356-83709375 | None:intergenic | 55.0% | |
| TATGCTGAAGGAGCTAGGCG+TGG | + | chr3.3:83710352-83710371 | MS.gene013030:CDS | 55.0% | |
| TGAGGGAAACGCTGCTATGG+TGG | - | chr3.3:83709366-83709385 | None:intergenic | 55.0% | |
| TGGTGAGGGAAACGCTGCTA+TGG | - | chr3.3:83709369-83709388 | None:intergenic | 55.0% | |
| ! | GATCGGTGGAGTTGGATTGG+AGG | - | chr3.3:83709525-83709544 | None:intergenic | 55.0% |
| !! | TGTTGGCGGATTCGGATCGA+AGG | - | chr3.3:83709342-83709361 | None:intergenic | 55.0% |
| AGAGAGACGAGGTCCTCCAG+CGG | - | chr3.3:83709602-83709621 | None:intergenic | 60.0% | |
| GGAGACGAGCTTAGAGGCGA+AGG | - | chr3.3:83709557-83709576 | None:intergenic | 60.0% | |
| TGCGGTGGCTGCAACAGCTT+CGG | - | chr3.3:83710486-83710505 | None:intergenic | 60.0% | |
| AAAGACGGTGCTCCCGCTGG+AGG | + | chr3.3:83709586-83709605 | MS.gene013030:CDS | 65.0% | |
| CTCAAAGACGGTGCTCCCGC+TGG | + | chr3.3:83709583-83709602 | MS.gene013030:CDS | 65.0% | |
| GAGAGACGAGGTCCTCCAGC+GGG | - | chr3.3:83709601-83709620 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83709175 | 83710649 | 83709175 | ID=MS.gene013030 |
| chr3.3 | mRNA | 83709175 | 83710649 | 83709175 | ID=MS.gene013030.t1;Parent=MS.gene013030 |
| chr3.3 | exon | 83709175 | 83709732 | 83709175 | ID=MS.gene013030.t1.exon1;Parent=MS.gene013030.t1 |
| chr3.3 | CDS | 83709175 | 83709732 | 83709175 | ID=cds.MS.gene013030.t1;Parent=MS.gene013030.t1 |
| chr3.3 | exon | 83709873 | 83710649 | 83709873 | ID=MS.gene013030.t1.exon2;Parent=MS.gene013030.t1 |
| chr3.3 | CDS | 83709873 | 83710649 | 83709873 | ID=cds.MS.gene013030.t1;Parent=MS.gene013030.t1 |
| Gene Sequence |
| Protein sequence |
