Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013032.t1 | XP_003602973.1 | 97.4 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 9.00E-211 | 742.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013032.t1 | Q9S7T8 | 56.9 | 390 | 165 | 3 | 1 | 387 | 1 | 390 | 3.4e-126 | 453.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013032.t1 | G7J5Q8 | 97.4 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 6.5e-211 | 742.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene013032 | PPI |
| MS.gene045585 | MS.gene013032 | PPI |
| MS.gene031697 | MS.gene013032 | PPI |
| MS.gene065944 | MS.gene013032 | PPI |
| MS.gene065945 | MS.gene013032 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013032.t1 | MTR_3g101010 | 97.429 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 0.0 | 771 |
| MS.gene013032.t1 | MTR_3g101030 | 73.116 | 398 | 87 | 4 | 10 | 389 | 34 | 429 | 0.0 | 579 |
| MS.gene013032.t1 | MTR_4g045707 | 74.160 | 387 | 96 | 2 | 4 | 389 | 5 | 388 | 0.0 | 574 |
| MS.gene013032.t1 | MTR_3g018740 | 72.165 | 388 | 105 | 2 | 1 | 387 | 1 | 386 | 0.0 | 557 |
| MS.gene013032.t1 | MTR_8g027395 | 70.026 | 387 | 112 | 1 | 3 | 389 | 15 | 397 | 0.0 | 548 |
| MS.gene013032.t1 | MTR_8g461160 | 70.543 | 387 | 110 | 2 | 5 | 387 | 6 | 392 | 0.0 | 540 |
| MS.gene013032.t1 | MTR_3g101050 | 73.368 | 383 | 79 | 6 | 9 | 387 | 33 | 396 | 0.0 | 525 |
| MS.gene013032.t1 | MTR_8g027420 | 67.442 | 387 | 111 | 2 | 3 | 389 | 4 | 375 | 0.0 | 523 |
| MS.gene013032.t1 | MTR_3g101180 | 66.917 | 399 | 121 | 4 | 1 | 388 | 1 | 399 | 0.0 | 521 |
| MS.gene013032.t1 | MTR_3g048000 | 67.708 | 384 | 103 | 3 | 6 | 388 | 28 | 391 | 0.0 | 520 |
| MS.gene013032.t1 | MTR_2g046030 | 66.752 | 391 | 121 | 3 | 1 | 387 | 1 | 386 | 0.0 | 512 |
| MS.gene013032.t1 | MTR_7g451890 | 65.296 | 389 | 131 | 2 | 5 | 389 | 14 | 402 | 0.0 | 509 |
| MS.gene013032.t1 | MTR_2g045980 | 66.496 | 391 | 122 | 3 | 1 | 387 | 1 | 386 | 0.0 | 508 |
| MS.gene013032.t1 | MTR_4g088525 | 68.767 | 365 | 110 | 1 | 24 | 388 | 8 | 368 | 3.99e-179 | 503 |
| MS.gene013032.t1 | MTR_7g047780 | 65.296 | 389 | 131 | 2 | 5 | 389 | 14 | 402 | 7.07e-178 | 501 |
| MS.gene013032.t1 | MTR_3g101130 | 64.267 | 389 | 132 | 3 | 4 | 389 | 5 | 389 | 9.79e-177 | 497 |
| MS.gene013032.t1 | MTR_7g050750 | 63.427 | 391 | 139 | 2 | 3 | 389 | 6 | 396 | 3.41e-176 | 496 |
| MS.gene013032.t1 | MTR_7g050810 | 63.359 | 393 | 132 | 3 | 5 | 389 | 16 | 404 | 7.17e-176 | 496 |
| MS.gene013032.t1 | MTR_4g088535 | 65.104 | 384 | 114 | 3 | 5 | 388 | 7 | 370 | 7.55e-171 | 482 |
| MS.gene013032.t1 | MTR_3g015620 | 62.532 | 387 | 117 | 4 | 5 | 387 | 16 | 378 | 1.82e-157 | 448 |
| MS.gene013032.t1 | MTR_3g102920 | 61.316 | 380 | 107 | 5 | 13 | 388 | 66 | 409 | 7.65e-152 | 435 |
| MS.gene013032.t1 | MTR_3g100995 | 78.988 | 257 | 51 | 2 | 133 | 389 | 11 | 264 | 4.61e-146 | 415 |
| MS.gene013032.t1 | MTR_3g101190 | 54.499 | 389 | 100 | 3 | 1 | 389 | 1 | 312 | 8.65e-139 | 398 |
| MS.gene013032.t1 | MTR_3g101200 | 55.155 | 388 | 147 | 4 | 3 | 388 | 29 | 391 | 1.86e-135 | 393 |
| MS.gene013032.t1 | MTR_3g100010 | 61.465 | 314 | 73 | 2 | 30 | 310 | 42 | 340 | 7.13e-125 | 364 |
| MS.gene013032.t1 | MTR_3g018747 | 70.000 | 260 | 62 | 3 | 129 | 387 | 9 | 253 | 7.81e-124 | 358 |
| MS.gene013032.t1 | MTR_7g050830 | 56.688 | 314 | 103 | 3 | 5 | 296 | 16 | 318 | 3.58e-118 | 346 |
| MS.gene013032.t1 | MTR_3g015760 | 62.362 | 271 | 98 | 2 | 118 | 387 | 12 | 279 | 3.02e-107 | 317 |
| MS.gene013032.t1 | MTR_3g111160 | 74.762 | 210 | 50 | 2 | 181 | 389 | 13 | 220 | 1.60e-100 | 297 |
| MS.gene013032.t1 | MTR_3g100520 | 65.315 | 222 | 62 | 3 | 170 | 389 | 1 | 209 | 8.00e-97 | 288 |
| MS.gene013032.t1 | MTR_3g099970 | 69.898 | 196 | 42 | 2 | 129 | 324 | 20 | 198 | 4.17e-90 | 270 |
| MS.gene013032.t1 | MTR_3g114310 | 42.105 | 399 | 208 | 12 | 6 | 389 | 20 | 410 | 1.22e-88 | 274 |
| MS.gene013032.t1 | MTR_3g101110 | 60.581 | 241 | 61 | 4 | 129 | 363 | 68 | 280 | 3.24e-88 | 268 |
| MS.gene013032.t1 | MTR_2g046410 | 66.019 | 206 | 64 | 2 | 186 | 387 | 144 | 347 | 4.63e-87 | 268 |
| MS.gene013032.t1 | MTR_3g101020 | 70.899 | 189 | 24 | 3 | 203 | 389 | 1 | 160 | 5.50e-83 | 250 |
| MS.gene013032.t1 | MTR_3g101150 | 68.354 | 158 | 46 | 2 | 235 | 388 | 1 | 158 | 1.80e-68 | 213 |
| MS.gene013032.t1 | MTR_3g111150 | 61.017 | 177 | 45 | 2 | 7 | 183 | 1 | 153 | 6.69e-67 | 209 |
| MS.gene013032.t1 | MTR_3g102870 | 63.291 | 158 | 58 | 0 | 194 | 351 | 3 | 160 | 1.49e-63 | 201 |
| MS.gene013032.t1 | MTR_3g100990 | 69.925 | 133 | 40 | 0 | 1 | 133 | 1 | 133 | 4.53e-56 | 192 |
| MS.gene013032.t1 | MTR_4g093550 | 68.605 | 86 | 27 | 0 | 3 | 88 | 4 | 89 | 4.53e-32 | 117 |
| MS.gene013032.t1 | MTR_6g046890 | 70.238 | 84 | 22 | 1 | 13 | 96 | 7 | 87 | 8.05e-29 | 109 |
| MS.gene013032.t1 | MTR_3g101140 | 63.768 | 69 | 24 | 1 | 322 | 389 | 48 | 116 | 1.22e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013032.t1 | AT1G47710 | 56.923 | 390 | 165 | 3 | 1 | 387 | 1 | 390 | 2.32e-163 | 464 |
| MS.gene013032.t1 | AT1G47710 | 56.923 | 390 | 165 | 3 | 1 | 387 | 28 | 417 | 1.62e-162 | 462 |
| MS.gene013032.t1 | AT3G45220 | 48.232 | 396 | 189 | 6 | 1 | 386 | 1 | 390 | 9.87e-129 | 375 |
| MS.gene013032.t1 | AT2G26390 | 49.747 | 396 | 179 | 8 | 1 | 386 | 1 | 386 | 1.04e-125 | 368 |
| MS.gene013032.t1 | AT2G25240 | 48.214 | 392 | 187 | 8 | 1 | 386 | 1 | 382 | 2.64e-123 | 362 |
| MS.gene013032.t1 | AT2G14540 | 45.269 | 391 | 187 | 6 | 1 | 386 | 29 | 397 | 9.61e-106 | 317 |
| MS.gene013032.t1 | AT1G62170 | 42.893 | 394 | 193 | 6 | 1 | 386 | 62 | 431 | 3.34e-104 | 315 |
| MS.gene013032.t1 | AT1G64030 | 43.367 | 392 | 195 | 6 | 1 | 386 | 1 | 371 | 4.60e-103 | 310 |
| MS.gene013032.t1 | AT1G62170 | 39.578 | 427 | 193 | 7 | 1 | 386 | 62 | 464 | 4.80e-97 | 297 |
| MS.gene013032.t1 | AT2G35580 | 40.967 | 393 | 189 | 9 | 1 | 386 | 15 | 371 | 5.75e-95 | 289 |
| MS.gene013032.t1 | AT1G64010 | 48.624 | 218 | 88 | 4 | 170 | 386 | 1 | 195 | 5.28e-65 | 206 |
| MS.gene013032.t1 | AT1G64010 | 47.783 | 203 | 82 | 4 | 185 | 386 | 2 | 181 | 3.35e-57 | 185 |
| MS.gene013032.t1 | AT1G63280 | 60.000 | 115 | 42 | 2 | 129 | 241 | 8 | 120 | 9.64e-41 | 140 |
| MS.gene013032.t1 | AT1G62160 | 38.009 | 221 | 109 | 4 | 171 | 386 | 21 | 218 | 3.02e-35 | 129 |
| MS.gene013032.t1 | AT1G51330 | 54.054 | 111 | 48 | 2 | 128 | 235 | 30 | 140 | 5.17e-30 | 114 |
| MS.gene013032.t1 | AT1G64020 | 31.707 | 123 | 77 | 4 | 1 | 119 | 1 | 120 | 3.27e-12 | 63.5 |
Find 89 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGAAGAAGTTCTTTAATA+AGG | 0.229650 | 3.3:-83696018 | None:intergenic |
| TTATCTTCGCCTTGCTTATA+AGG | 0.250540 | 3.3:-83696244 | None:intergenic |
| GATGTTGTTGTCTGATTCTT+TGG | 0.267730 | 3.3:-83694729 | None:intergenic |
| GAAAGACTTGTGAAATATAT+TGG | 0.284781 | 3.3:-83696536 | None:intergenic |
| AAGTGGAAGTAGGTGACTTT+AGG | 0.307716 | 3.3:+83696380 | MS.gene013032:CDS |
| CCAAAGTTCAATATTTCATT+TGG | 0.319061 | 3.3:+83696406 | MS.gene013032:CDS |
| CATAGAAACATACCTTGTTC+TGG | 0.320072 | 3.3:-83695039 | None:intergenic |
| GTTGAGATGATCGGTGGATT+TGG | 0.324906 | 3.3:-83694846 | None:intergenic |
| GTGTTAAGCATAATCGCTTC+TGG | 0.336647 | 3.3:+83694779 | MS.gene013032:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.368008 | 3.3:+83696289 | MS.gene013032:CDS |
| ACTGGAACAATCATCTTTGT+TGG | 0.369413 | 3.3:+83696697 | MS.gene013032:CDS |
| ATTAAAGAACTTCTTCCTCT+TGG | 0.374691 | 3.3:+83696022 | MS.gene013032:CDS |
| CAGGTGCTCAATCCTCTTGT+TGG | 0.380464 | 3.3:+83696721 | MS.gene013032:CDS |
| AGCCCATGAATTCACTTCAT+TGG | 0.383156 | 3.3:-83695978 | None:intergenic |
| TTAAAGAACTTCTTCCTCTT+GGG | 0.399952 | 3.3:+83696023 | MS.gene013032:CDS |
| CTGCTGCATCTATATTGTTA+AGG | 0.411072 | 3.3:+83696599 | MS.gene013032:CDS |
| GAAAGAGAGGAGAGGACCGC+CGG | 0.415990 | 3.3:-83694918 | None:intergenic |
| AGGTGCTCAATCCTCTTGTT+GGG | 0.421016 | 3.3:+83696722 | MS.gene013032:CDS |
| AATCAGTGGCGACGATTTGT+TGG | 0.421422 | 3.3:-83694988 | None:intergenic |
| CGATTATGCTTAACACAACT+TGG | 0.425025 | 3.3:-83694772 | None:intergenic |
| GGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.3:-83694967 | None:intergenic |
| TGACCAATGAAGTGAATTCA+TGG | 0.438108 | 3.3:+83695975 | MS.gene013032:CDS |
| AACAATCATCTTTGTTGGAC+AGG | 0.442686 | 3.3:+83696702 | MS.gene013032:CDS |
| TCTCTAATCATAAACAAGAA+AGG | 0.443816 | 3.3:-83696667 | None:intergenic |
| CCAAATGAAATATTGAACTT+TGG | 0.444637 | 3.3:-83696406 | None:intergenic |
| GTCATGAAAGGAACCTTGAC+TGG | 0.444676 | 3.3:-83696166 | None:intergenic |
| CGCTGAGTGATACGTTGGTT+TGG | 0.454352 | 3.3:-83694688 | None:intergenic |
| TTCATTGAAGTGAATGAAGA+AGG | 0.456815 | 3.3:+83696556 | MS.gene013032:CDS |
| CTCTAATCATAAACAAGAAA+GGG | 0.468439 | 3.3:-83696666 | None:intergenic |
| TCTCTTTCGTCGACGGCGTG+TGG | 0.470722 | 3.3:+83694933 | MS.gene013032:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.3:-83694966 | None:intergenic |
| ACCGCCGGCGGGAGCAGCGT+CGG | 0.480997 | 3.3:-83694903 | None:intergenic |
| ATGATTAGAGAAGATTTGAC+TGG | 0.486911 | 3.3:+83696679 | MS.gene013032:CDS |
| CTCTTTCGTCGACGGCGTGT+GGG | 0.489030 | 3.3:+83694934 | MS.gene013032:CDS |
| GTGAGACCTCCACCAGAGAA+AGG | 0.492502 | 3.3:-83696472 | None:intergenic |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.493850 | 3.3:+83696290 | MS.gene013032:CDS |
| GATGATCGGTGGATTTGGAT+TGG | 0.502023 | 3.3:-83694841 | None:intergenic |
| GGCAGCATTGGTTGAAAAGG+TGG | 0.507398 | 3.3:+83696315 | MS.gene013032:CDS |
| GCGACGATTTGTTGGAAGGA+AGG | 0.507919 | 3.3:-83694980 | None:intergenic |
| CATAATCGCTTCTGGTTCTG+AGG | 0.508427 | 3.3:+83694787 | MS.gene013032:CDS |
| AAAAGATGGGTTGGCAGCAT+TGG | 0.509349 | 3.3:+83696303 | MS.gene013032:CDS |
| GTGCATTGGCAAAGATGAGC+CGG | 0.510572 | 3.3:-83696063 | None:intergenic |
| TGAAACTTCTGATATGCTAA+AGG | 0.511157 | 3.3:+83696432 | MS.gene013032:CDS |
| TCCTTTGAAGTATAGTGCAT+TGG | 0.511249 | 3.3:-83696077 | None:intergenic |
| TCCAAATGCAAAAGATGGGT+TGG | 0.513480 | 3.3:+83696294 | MS.gene013032:CDS |
| GATCGGTGGATTTGGATTGG+AGG | 0.520767 | 3.3:-83694838 | None:intergenic |
| GTTGGCAGCATTGGTTGAAA+AGG | 0.523393 | 3.3:+83696312 | MS.gene013032:CDS |
| CTTGGTCTTCCTTATAAGCA+AGG | 0.532609 | 3.3:+83696235 | MS.gene013032:CDS |
| TGACTGGGCTACCATTCAAA+AGG | 0.534936 | 3.3:-83696150 | None:intergenic |
| CTCTCCGACGCTGCTCCCGC+CGG | 0.545449 | 3.3:+83694899 | MS.gene013032:CDS |
| CCTCTCCTCTCTTTCGTCGA+CGG | 0.547618 | 3.3:+83694926 | MS.gene013032:CDS |
| AGAGAGGAGAGGACCGCCGG+CGG | 0.548453 | 3.3:-83694915 | None:intergenic |
| TCCGACGCTGCTCCCGCCGG+CGG | 0.548583 | 3.3:+83694902 | MS.gene013032:CDS |
| GAGAGGAGAGGACCGCCGGC+GGG | 0.549070 | 3.3:-83694914 | None:intergenic |
| GCCAATGCACTATACTTCAA+AGG | 0.552753 | 3.3:+83696076 | MS.gene013032:CDS |
| TGGGCTGACAAAGAGACAAA+TGG | 0.553610 | 3.3:+83695995 | MS.gene013032:CDS |
| TTCCGTTGATTTCCAGAACA+AGG | 0.553793 | 3.3:+83695027 | MS.gene013032:CDS |
| TCTGATATGCTAAAGGAGCT+AGG | 0.556026 | 3.3:+83696439 | MS.gene013032:CDS |
| AGTGGCGACGATTTGTTGGA+AGG | 0.557837 | 3.3:-83694984 | None:intergenic |
| TTGAAAAGTTCTTGTTGCGT+GGG | 0.558109 | 3.3:-83694812 | None:intergenic |
| GAGTGATACGTTGGTTTGGT+TGG | 0.571674 | 3.3:-83694684 | None:intergenic |
| TGCATTGGCAAAGATGAGCC+GGG | 0.576228 | 3.3:-83696062 | None:intergenic |
| TTTGAATGGTAGCCCAGTCA+AGG | 0.578981 | 3.3:+83696153 | MS.gene013032:CDS |
| GTTGAAAAGTTCTTGTTGCG+TGG | 0.579308 | 3.3:-83694813 | None:intergenic |
| AGAACTTCTTCCTCTTGGGT+CGG | 0.580984 | 3.3:+83696027 | MS.gene013032:CDS |
| AGCAGCGTCGGAGAGGATGA+CGG | 0.586515 | 3.3:-83694891 | None:intergenic |
| TGCGACGCTGAGTGATACGT+TGG | 0.588549 | 3.3:-83694693 | None:intergenic |
| CAAAGCTGCTTTAAAATCAG+TGG | 0.588821 | 3.3:-83695002 | None:intergenic |
| TAGTCGAGGTGGAATACTCA+TGG | 0.595090 | 3.3:-83696626 | None:intergenic |
| GGTCGGTCAACAACGCAACC+CGG | 0.601235 | 3.3:+83696044 | MS.gene013032:CDS |
| CACTATACTTCAAAGGAGCG+TGG | 0.606664 | 3.3:+83696083 | MS.gene013032:CDS |
| CCCTAAGATCACCCAACAAG+AGG | 0.607235 | 3.3:-83696733 | None:intergenic |
| ACACGCCGTCGACGAAAGAG+AGG | 0.607937 | 3.3:-83694931 | None:intergenic |
| GAAATATATTGGAAACACAA+AGG | 0.608551 | 3.3:-83696525 | None:intergenic |
| AGCGAAGTAGTTGAGATGAT+CGG | 0.609929 | 3.3:-83694855 | None:intergenic |
| AACACAACTTGGAGTGAGAG+TGG | 0.612789 | 3.3:-83694761 | None:intergenic |
| CGGCGGGAGCAGCGTCGGAG+AGG | 0.615687 | 3.3:-83694898 | None:intergenic |
| TACCTTGTTCTGGAAATCAA+CGG | 0.617645 | 3.3:-83695029 | None:intergenic |
| TCATGAAAGGAACCTTGACT+GGG | 0.618368 | 3.3:-83696165 | None:intergenic |
| ATAATCGCTTCTGGTTCTGA+GGG | 0.633560 | 3.3:+83694788 | MS.gene013032:CDS |
| TAATCATAAACAAGAAAGGG+TGG | 0.640706 | 3.3:-83696663 | None:intergenic |
| AGAAGGCACTGAAGCTGCTG+CGG | 0.641571 | 3.3:+83696573 | MS.gene013032:CDS |
| GCTACAAAGTCTAGTCGAGG+TGG | 0.662510 | 3.3:-83696637 | None:intergenic |
| GACCAATGAAGTGAATTCAT+GGG | 0.663853 | 3.3:+83695976 | MS.gene013032:CDS |
| CCGTCGACGAAAGAGAGGAG+AGG | 0.679367 | 3.3:-83694926 | None:intergenic |
| TATGCTAAAGGAGCTAGGTG+TGG | 0.687658 | 3.3:+83696444 | MS.gene013032:CDS |
| TCAGCTACAAAGTCTAGTCG+AGG | 0.690824 | 3.3:-83696640 | None:intergenic |
| GAAGTAGTTGAGATGATCGG+TGG | 0.701068 | 3.3:-83694852 | None:intergenic |
| GCGTTGTTGACCGACCCAAG+AGG | 0.750211 | 3.3:-83696037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTTAAATTTGATA+TGG | + | chr3.3:83695935-83695954 | MS.gene013032:intron | 10.0% |
| !! | GATTTATTTGAATAACATAA+AGG | - | chr3.3:83695525-83695544 | None:intergenic | 15.0% |
| !! | TTAAATTTGATATGGTTTAA+AGG | + | chr3.3:83695943-83695962 | MS.gene013032:intron | 15.0% |
| !! | AAGATAGAAAAACATTCTAA+TGG | - | chr3.3:83695395-83695414 | None:intergenic | 20.0% |
| !! | ATAAGCTTATATGAATGAAA+AGG | - | chr3.3:83695338-83695357 | None:intergenic | 20.0% |
| !! | TAAATGTATATCAAGCAAAA+AGG | + | chr3.3:83695572-83695591 | MS.gene013032:intron | 20.0% |
| !! | TAGTACTACAAAAATTTAAG+TGG | - | chr3.3:83695669-83695688 | None:intergenic | 20.0% |
| !!! | AAATTTTTGTAGTACTAAAG+AGG | + | chr3.3:83695672-83695691 | MS.gene013032:intron | 20.0% |
| !!! | AATTTTTGTAGTACTAAAGA+GGG | + | chr3.3:83695673-83695692 | MS.gene013032:intron | 20.0% |
| !!! | ATGATAAGCTTTTAAGATTT+AGG | + | chr3.3:83695142-83695161 | MS.gene013032:intron | 20.0% |
| !!! | TGATAAGCTTTTAAGATTTA+GGG | + | chr3.3:83695143-83695162 | MS.gene013032:intron | 20.0% |
| ! | CCAAAGTTCAATATTTCATT+TGG | + | chr3.3:83696406-83696425 | MS.gene013032:CDS | 25.0% |
| ! | CCAAATGAAATATTGAACTT+TGG | - | chr3.3:83696409-83696428 | None:intergenic | 25.0% |
| ! | CTCTAATCATAAACAAGAAA+GGG | - | chr3.3:83696669-83696688 | None:intergenic | 25.0% |
| ! | GAAAGACTTGTGAAATATAT+TGG | - | chr3.3:83696539-83696558 | None:intergenic | 25.0% |
| ! | GAAATATATTGGAAACACAA+AGG | - | chr3.3:83696528-83696547 | None:intergenic | 25.0% |
| ! | TCTCTAATCATAAACAAGAA+AGG | - | chr3.3:83696670-83696689 | None:intergenic | 25.0% |
| ! | TTATTTATAGCTTACGTGTT+TGG | - | chr3.3:83695232-83695251 | None:intergenic | 25.0% |
| !! | AGAAGAATTGAACATTTTGT+TGG | - | chr3.3:83695871-83695890 | None:intergenic | 25.0% |
| !!! | TTTGATGGTTTTAAAGTTCT+TGG | + | chr3.3:83696217-83696236 | MS.gene013032:CDS | 25.0% |
| ATGAATGAAAAGGACTCATT+CGG | - | chr3.3:83695328-83695347 | None:intergenic | 30.0% | |
| ATGATTAGAGAAGATTTGAC+TGG | + | chr3.3:83696679-83696698 | MS.gene013032:CDS | 30.0% | |
| ATTAAAGAACTTCTTCCTCT+TGG | + | chr3.3:83696022-83696041 | MS.gene013032:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.3:83696021-83696040 | None:intergenic | 30.0% | |
| GCATTACAAGCTAAATTAGT+TGG | - | chr3.3:83695836-83695855 | None:intergenic | 30.0% | |
| TAACATAAAGGTTTGTCACA+TGG | - | chr3.3:83695513-83695532 | None:intergenic | 30.0% | |
| TAATCATAAACAAGAAAGGG+TGG | - | chr3.3:83696666-83696685 | None:intergenic | 30.0% | |
| TATAAGCTTATAAGCTAAGC+TGG | + | chr3.3:83695347-83695366 | MS.gene013032:intron | 30.0% | |
| TGAAACTTCTGATATGCTAA+AGG | + | chr3.3:83696432-83696451 | MS.gene013032:CDS | 30.0% | |
| TGAAAGCTGTGGTATATATT+TGG | + | chr3.3:83695417-83695436 | MS.gene013032:intron | 30.0% | |
| TGCTTGATATACATTTACGA+AGG | - | chr3.3:83695569-83695588 | None:intergenic | 30.0% | |
| TTAAAGAACTTCTTCCTCTT+GGG | + | chr3.3:83696023-83696042 | MS.gene013032:CDS | 30.0% | |
| TTCATTGAAGTGAATGAAGA+AGG | + | chr3.3:83696556-83696575 | MS.gene013032:CDS | 30.0% | |
| TTCTATCTTAATGAAAGCTG+TGG | + | chr3.3:83695406-83695425 | MS.gene013032:intron | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.3:83696290-83696309 | MS.gene013032:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.3:83696289-83696308 | MS.gene013032:CDS | 30.0% | |
| ! | AATAAACTGCTTCTTTTTGC+TGG | - | chr3.3:83696191-83696210 | None:intergenic | 30.0% |
| ! | CAGTTTATTAGAGCTTTTGA+TGG | + | chr3.3:83696202-83696221 | MS.gene013032:CDS | 30.0% |
| ! | GGTAACTATCATTTTCTCAT+GGG | - | chr3.3:83695307-83695326 | None:intergenic | 30.0% |
| ! | TTAAGATTTAGGGTCTATCT+CGG | + | chr3.3:83695153-83695172 | MS.gene013032:intron | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.3:83696702-83696721 | MS.gene013032:CDS | 35.0% | |
| AAGCTGTGGTATATATTTGG+AGG | + | chr3.3:83695420-83695439 | MS.gene013032:intron | 35.0% | |
| AAGGAAAGACAAACAGGTAT+AGG | - | chr3.3:83695550-83695569 | None:intergenic | 35.0% | |
| ACTGGAACAATCATCTTTGT+TGG | + | chr3.3:83696697-83696716 | MS.gene013032:CDS | 35.0% | |
| CATAGAAACATACCTTGTTC+TGG | - | chr3.3:83695042-83695061 | None:intergenic | 35.0% | |
| CGATTATGCTTAACACAACT+TGG | - | chr3.3:83694775-83694794 | None:intergenic | 35.0% | |
| CTGCTGCATCTATATTGTTA+AGG | + | chr3.3:83696599-83696618 | MS.gene013032:CDS | 35.0% | |
| GACCAATGAAGTGAATTCAT+GGG | + | chr3.3:83695976-83695995 | MS.gene013032:CDS | 35.0% | |
| GATGTTGTTGTCTGATTCTT+TGG | - | chr3.3:83694732-83694751 | None:intergenic | 35.0% | |
| TGACCAATGAAGTGAATTCA+TGG | + | chr3.3:83695975-83695994 | MS.gene013032:CDS | 35.0% | |
| TGGATACTAGAAAACAGCAA+AGG | - | chr3.3:83695816-83695835 | None:intergenic | 35.0% | |
| TTATCTTCGCCTTGCTTATA+AGG | - | chr3.3:83696247-83696266 | None:intergenic | 35.0% | |
| TTGAAAAGTTCTTGTTGCGT+GGG | - | chr3.3:83694815-83694834 | None:intergenic | 35.0% | |
| TTTACGAAGGAAAGACAAAC+AGG | - | chr3.3:83695556-83695575 | None:intergenic | 35.0% | |
| ! | CGGTAACTATCATTTTCTCA+TGG | - | chr3.3:83695308-83695327 | None:intergenic | 35.0% |
| ! | TACGAGTTTCACCTTTTGAA+TGG | + | chr3.3:83696139-83696158 | MS.gene013032:CDS | 35.0% |
| ! | TTCTTTTTGCTGGTCATGAA+AGG | - | chr3.3:83696181-83696200 | None:intergenic | 35.0% |
| !! | CAAAGCTGCTTTAAAATCAG+TGG | - | chr3.3:83695005-83695024 | None:intergenic | 35.0% |
| !! | TACCTTGTTCTGGAAATCAA+CGG | - | chr3.3:83695032-83695051 | None:intergenic | 35.0% |
| !! | TCCTTTGAAGTATAGTGCAT+TGG | - | chr3.3:83696080-83696099 | None:intergenic | 35.0% |
| AAGTGGAAGTAGGTGACTTT+AGG | + | chr3.3:83696380-83696399 | MS.gene013032:CDS | 40.0% | |
| AGCCCATGAATTCACTTCAT+TGG | - | chr3.3:83695981-83696000 | None:intergenic | 40.0% | |
| AGCGAAGTAGTTGAGATGAT+CGG | - | chr3.3:83694858-83694877 | None:intergenic | 40.0% | |
| CAAGCTTCCTCTTGAAAAAG+TGG | + | chr3.3:83696363-83696382 | MS.gene013032:CDS | 40.0% | |
| CCTCTTGAAAAAGTGGAAGT+AGG | + | chr3.3:83696370-83696389 | MS.gene013032:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.3:83694969-83694988 | None:intergenic | 40.0% | |
| GCCAATGCACTATACTTCAA+AGG | + | chr3.3:83696076-83696095 | MS.gene013032:CDS | 40.0% | |
| GTGTTAAGCATAATCGCTTC+TGG | + | chr3.3:83694779-83694798 | MS.gene013032:CDS | 40.0% | |
| GTTGAAAAGTTCTTGTTGCG+TGG | - | chr3.3:83694816-83694835 | None:intergenic | 40.0% | |
| TCATGAAAGGAACCTTGACT+GGG | - | chr3.3:83696168-83696187 | None:intergenic | 40.0% | |
| TCCAAATGCAAAAGATGGGT+TGG | + | chr3.3:83696294-83696313 | MS.gene013032:CDS | 40.0% | |
| TCTGATATGCTAAAGGAGCT+AGG | + | chr3.3:83696439-83696458 | MS.gene013032:CDS | 40.0% | |
| ! | CTTGGTCTTCCTTATAAGCA+AGG | + | chr3.3:83696235-83696254 | MS.gene013032:CDS | 40.0% |
| !! | ATAATCGCTTCTGGTTCTGA+GGG | + | chr3.3:83694788-83694807 | MS.gene013032:CDS | 40.0% |
| !! | TTCCGTTGATTTCCAGAACA+AGG | + | chr3.3:83695027-83695046 | MS.gene013032:CDS | 40.0% |
| !!! | CCTACTTCCACTTTTTCAAG+AGG | - | chr3.3:83696373-83696392 | None:intergenic | 40.0% |
| AACACAACTTGGAGTGAGAG+TGG | - | chr3.3:83694764-83694783 | None:intergenic | 45.0% | |
| AATCAGTGGCGACGATTTGT+TGG | - | chr3.3:83694991-83695010 | None:intergenic | 45.0% | |
| AGAACTTCTTCCTCTTGGGT+CGG | + | chr3.3:83696027-83696046 | MS.gene013032:CDS | 45.0% | |
| AGGTGCTCAATCCTCTTGTT+GGG | + | chr3.3:83696722-83696741 | MS.gene013032:CDS | 45.0% | |
| CACTATACTTCAAAGGAGCG+TGG | + | chr3.3:83696083-83696102 | MS.gene013032:CDS | 45.0% | |
| GAAGTAGTTGAGATGATCGG+TGG | - | chr3.3:83694855-83694874 | None:intergenic | 45.0% | |
| GGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.3:83694970-83694989 | None:intergenic | 45.0% | |
| GTCATGAAAGGAACCTTGAC+TGG | - | chr3.3:83696169-83696188 | None:intergenic | 45.0% | |
| TAGTCGAGGTGGAATACTCA+TGG | - | chr3.3:83696629-83696648 | None:intergenic | 45.0% | |
| TATGCTAAAGGAGCTAGGTG+TGG | + | chr3.3:83696444-83696463 | MS.gene013032:CDS | 45.0% | |
| TCAGCTACAAAGTCTAGTCG+AGG | - | chr3.3:83696643-83696662 | None:intergenic | 45.0% | |
| TCTGCAATTCCCTGCTACAA+TGG | + | chr3.3:83695620-83695639 | MS.gene013032:intron | 45.0% | |
| TGACTGGGCTACCATTCAAA+AGG | - | chr3.3:83696153-83696172 | None:intergenic | 45.0% | |
| TGGGCTGACAAAGAGACAAA+TGG | + | chr3.3:83695995-83696014 | MS.gene013032:CDS | 45.0% | |
| TGGTGGAGGTCTCACAAAAA+TGG | + | chr3.3:83696480-83696499 | MS.gene013032:CDS | 45.0% | |
| TGTGAAGAGCCATTGTAGCA+GGG | - | chr3.3:83695632-83695651 | None:intergenic | 45.0% | |
| TTTGAATGGTAGCCCAGTCA+AGG | + | chr3.3:83696153-83696172 | MS.gene013032:CDS | 45.0% | |
| ! | GATGATCGGTGGATTTGGAT+TGG | - | chr3.3:83694844-83694863 | None:intergenic | 45.0% |
| ! | GCCAACCCATCTTTTGCATT+TGG | - | chr3.3:83696298-83696317 | None:intergenic | 45.0% |
| ! | GTTGAGATGATCGGTGGATT+TGG | - | chr3.3:83694849-83694868 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCTCTGGTGG+AGG | + | chr3.3:83696466-83696485 | MS.gene013032:CDS | 45.0% |
| !! | AAAAGATGGGTTGGCAGCAT+TGG | + | chr3.3:83696303-83696322 | MS.gene013032:CDS | 45.0% |
| !! | CATAATCGCTTCTGGTTCTG+AGG | + | chr3.3:83694787-83694806 | MS.gene013032:CDS | 45.0% |
| !! | GAGTGATACGTTGGTTTGGT+TGG | - | chr3.3:83694687-83694706 | None:intergenic | 45.0% |
| !! | GGTGTGGTTTTACCTTTCTC+TGG | + | chr3.3:83696460-83696479 | MS.gene013032:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCTCTGG+TGG | + | chr3.3:83696463-83696482 | MS.gene013032:CDS | 45.0% |
| !! | GTTGGCAGCATTGGTTGAAA+AGG | + | chr3.3:83696312-83696331 | MS.gene013032:CDS | 45.0% |
| CAGGTGCTCAATCCTCTTGT+TGG | + | chr3.3:83696721-83696740 | MS.gene013032:CDS | 50.0% | |
| CTGTGAAGAGCCATTGTAGC+AGG | - | chr3.3:83695633-83695652 | None:intergenic | 50.0% | |
| GCTACAAAGTCTAGTCGAGG+TGG | - | chr3.3:83696640-83696659 | None:intergenic | 50.0% | |
| ! | CGCTGAGTGATACGTTGGTT+TGG | - | chr3.3:83694691-83694710 | None:intergenic | 50.0% |
| ! | GATCGGTGGATTTGGATTGG+AGG | - | chr3.3:83694841-83694860 | None:intergenic | 50.0% |
| ! | GTGCATTGGCAAAGATGAGC+CGG | - | chr3.3:83696066-83696085 | None:intergenic | 50.0% |
| ! | TGCATTGGCAAAGATGAGCC+GGG | - | chr3.3:83696065-83696084 | None:intergenic | 50.0% |
| !! | AGTGGCGACGATTTGTTGGA+AGG | - | chr3.3:83694987-83695006 | None:intergenic | 50.0% |
| !! | GCGACGATTTGTTGGAAGGA+AGG | - | chr3.3:83694983-83695002 | None:intergenic | 50.0% |
| !! | GGCAGCATTGGTTGAAAAGG+TGG | + | chr3.3:83696315-83696334 | MS.gene013032:CDS | 50.0% |
| CCTCTCCTCTCTTTCGTCGA+CGG | + | chr3.3:83694926-83694945 | MS.gene013032:CDS | 55.0% | |
| GTGAGACCTCCACCAGAGAA+AGG | - | chr3.3:83696475-83696494 | None:intergenic | 55.0% | |
| TGCGACGCTGAGTGATACGT+TGG | - | chr3.3:83694696-83694715 | None:intergenic | 55.0% | |
| !! | AGAAGGCACTGAAGCTGCTG+CGG | + | chr3.3:83696573-83696592 | MS.gene013032:CDS | 55.0% |
| ACACGCCGTCGACGAAAGAG+AGG | - | chr3.3:83694934-83694953 | None:intergenic | 60.0% | |
| CCGTCGACGAAAGAGAGGAG+AGG | - | chr3.3:83694929-83694948 | None:intergenic | 60.0% | |
| CTCTTTCGTCGACGGCGTGT+GGG | + | chr3.3:83694934-83694953 | MS.gene013032:CDS | 60.0% | |
| GAAAGAGAGGAGAGGACCGC+CGG | - | chr3.3:83694921-83694940 | None:intergenic | 60.0% | |
| GCGTTGTTGACCGACCCAAG+AGG | - | chr3.3:83696040-83696059 | None:intergenic | 60.0% | |
| GGTCGGTCAACAACGCAACC+CGG | + | chr3.3:83696044-83696063 | MS.gene013032:CDS | 60.0% | |
| TCTCTTTCGTCGACGGCGTG+TGG | + | chr3.3:83694933-83694952 | MS.gene013032:CDS | 60.0% | |
| ! | AGCAGCGTCGGAGAGGATGA+CGG | - | chr3.3:83694894-83694913 | None:intergenic | 60.0% |
| AGAGAGGAGAGGACCGCCGG+CGG | - | chr3.3:83694918-83694937 | None:intergenic | 70.0% | |
| CTCTCCGACGCTGCTCCCGC+CGG | + | chr3.3:83694899-83694918 | MS.gene013032:CDS | 75.0% | |
| GAGAGGAGAGGACCGCCGGC+GGG | - | chr3.3:83694917-83694936 | None:intergenic | 75.0% | |
| ! | ACCGCCGGCGGGAGCAGCGT+CGG | - | chr3.3:83694906-83694925 | None:intergenic | 80.0% |
| ! | TCCGACGCTGCTCCCGCCGG+CGG | + | chr3.3:83694902-83694921 | MS.gene013032:CDS | 80.0% |
| !! | CGGCGGGAGCAGCGTCGGAG+AGG | - | chr3.3:83694901-83694920 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83694662 | 83696747 | 83694662 | ID=MS.gene013032 |
| chr3.3 | mRNA | 83694662 | 83696747 | 83694662 | ID=MS.gene013032.t1;Parent=MS.gene013032 |
| chr3.3 | exon | 83694662 | 83695048 | 83694662 | ID=MS.gene013032.t1.exon1;Parent=MS.gene013032.t1 |
| chr3.3 | CDS | 83694662 | 83695048 | 83694662 | ID=cds.MS.gene013032.t1;Parent=MS.gene013032.t1 |
| chr3.3 | exon | 83695965 | 83696747 | 83695965 | ID=MS.gene013032.t1.exon2;Parent=MS.gene013032.t1 |
| chr3.3 | CDS | 83695965 | 83696747 | 83695965 | ID=cds.MS.gene013032.t1;Parent=MS.gene013032.t1 |
| Gene Sequence |
| Protein sequence |
