Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013053.t1 | XP_003602973.1 | 71.6 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 1.20E-149 | 539.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013053.t1 | Q9S7T8 | 51.7 | 387 | 184 | 3 | 18 | 402 | 5 | 390 | 1.0e-109 | 398.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013053.t1 | G7J5Q8 | 71.6 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 8.6e-150 | 539.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene065944 | MS.gene013053 | PPI |
MS.gene065945 | MS.gene013053 | PPI |
MS.gene006610 | MS.gene013053 | PPI |
MS.gene045585 | MS.gene013053 | PPI |
MS.gene031697 | MS.gene013053 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013053.t1 | MTR_8g027395 | 69.773 | 397 | 113 | 4 | 9 | 404 | 7 | 397 | 0.0 | 545 |
MS.gene013053.t1 | MTR_3g101010 | 71.576 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 0.0 | 539 |
MS.gene013053.t1 | MTR_3g018740 | 69.666 | 389 | 112 | 4 | 15 | 402 | 3 | 386 | 0.0 | 531 |
MS.gene013053.t1 | MTR_4g045707 | 66.925 | 387 | 124 | 4 | 18 | 404 | 6 | 388 | 0.0 | 511 |
MS.gene013053.t1 | MTR_8g027420 | 65.206 | 388 | 118 | 4 | 17 | 404 | 5 | 375 | 3.32e-172 | 486 |
MS.gene013053.t1 | MTR_3g101030 | 61.634 | 404 | 133 | 5 | 19 | 404 | 30 | 429 | 1.30e-171 | 486 |
MS.gene013053.t1 | MTR_2g045980 | 64.175 | 388 | 130 | 4 | 18 | 402 | 5 | 386 | 4.58e-171 | 483 |
MS.gene013053.t1 | MTR_2g046030 | 64.175 | 388 | 130 | 4 | 18 | 402 | 5 | 386 | 6.50e-171 | 483 |
MS.gene013053.t1 | MTR_8g461160 | 64.010 | 389 | 134 | 4 | 18 | 402 | 6 | 392 | 3.87e-170 | 481 |
MS.gene013053.t1 | MTR_4g088535 | 63.144 | 388 | 121 | 4 | 16 | 403 | 5 | 370 | 4.69e-169 | 478 |
MS.gene013053.t1 | MTR_3g101180 | 61.905 | 399 | 140 | 6 | 15 | 403 | 3 | 399 | 6.88e-169 | 478 |
MS.gene013053.t1 | MTR_3g048000 | 60.437 | 412 | 133 | 5 | 1 | 403 | 1 | 391 | 1.05e-167 | 475 |
MS.gene013053.t1 | MTR_7g451890 | 60.448 | 402 | 150 | 5 | 10 | 404 | 3 | 402 | 4.59e-167 | 474 |
MS.gene013053.t1 | MTR_4g088525 | 65.312 | 369 | 118 | 4 | 37 | 403 | 8 | 368 | 2.37e-166 | 471 |
MS.gene013053.t1 | MTR_7g050750 | 61.381 | 391 | 145 | 4 | 18 | 404 | 8 | 396 | 2.24e-164 | 467 |
MS.gene013053.t1 | MTR_3g101130 | 60.459 | 392 | 146 | 4 | 16 | 404 | 4 | 389 | 1.00e-163 | 465 |
MS.gene013053.t1 | MTR_7g047780 | 60.199 | 402 | 151 | 5 | 10 | 404 | 3 | 402 | 2.18e-163 | 464 |
MS.gene013053.t1 | MTR_7g050810 | 59.214 | 407 | 149 | 6 | 9 | 404 | 4 | 404 | 5.62e-160 | 456 |
MS.gene013053.t1 | MTR_3g015620 | 61.084 | 406 | 126 | 6 | 1 | 402 | 1 | 378 | 4.71e-158 | 450 |
MS.gene013053.t1 | MTR_3g101050 | 62.183 | 394 | 124 | 9 | 14 | 402 | 23 | 396 | 2.75e-149 | 429 |
MS.gene013053.t1 | MTR_3g102920 | 56.188 | 404 | 130 | 7 | 10 | 403 | 43 | 409 | 3.97e-140 | 406 |
MS.gene013053.t1 | MTR_3g100520 | 84.685 | 222 | 21 | 1 | 183 | 404 | 1 | 209 | 3.94e-133 | 380 |
MS.gene013053.t1 | MTR_3g101200 | 52.525 | 396 | 159 | 5 | 10 | 403 | 23 | 391 | 4.45e-125 | 367 |
MS.gene013053.t1 | MTR_3g101190 | 54.521 | 365 | 101 | 5 | 40 | 404 | 13 | 312 | 1.16e-124 | 363 |
MS.gene013053.t1 | MTR_3g100995 | 66.148 | 257 | 80 | 4 | 149 | 404 | 14 | 264 | 4.47e-119 | 347 |
MS.gene013053.t1 | MTR_3g100010 | 52.260 | 354 | 111 | 6 | 7 | 320 | 1 | 336 | 5.44e-110 | 327 |
MS.gene013053.t1 | MTR_7g050830 | 51.840 | 326 | 121 | 5 | 9 | 310 | 5 | 318 | 6.18e-106 | 316 |
MS.gene013053.t1 | MTR_3g018747 | 63.359 | 262 | 78 | 4 | 142 | 402 | 9 | 253 | 1.60e-105 | 312 |
MS.gene013053.t1 | MTR_3g015760 | 56.250 | 288 | 106 | 5 | 123 | 402 | 4 | 279 | 5.85e-101 | 301 |
MS.gene013053.t1 | MTR_3g111160 | 65.919 | 223 | 72 | 3 | 183 | 404 | 1 | 220 | 1.57e-88 | 267 |
MS.gene013053.t1 | MTR_3g101110 | 57.741 | 239 | 67 | 4 | 145 | 378 | 71 | 280 | 1.53e-85 | 262 |
MS.gene013053.t1 | MTR_3g114310 | 41.266 | 395 | 211 | 11 | 23 | 404 | 24 | 410 | 2.26e-84 | 263 |
MS.gene013053.t1 | MTR_2g046410 | 63.768 | 207 | 69 | 3 | 199 | 402 | 144 | 347 | 1.27e-80 | 251 |
MS.gene013053.t1 | MTR_3g099970 | 60.606 | 198 | 59 | 3 | 142 | 339 | 20 | 198 | 2.86e-79 | 243 |
MS.gene013053.t1 | MTR_3g111150 | 57.222 | 180 | 49 | 2 | 21 | 198 | 2 | 155 | 7.45e-65 | 205 |
MS.gene013053.t1 | MTR_3g101020 | 56.842 | 190 | 51 | 4 | 216 | 404 | 1 | 160 | 1.71e-63 | 201 |
MS.gene013053.t1 | MTR_3g100990 | 82.677 | 127 | 22 | 0 | 16 | 142 | 3 | 129 | 4.95e-62 | 208 |
MS.gene013053.t1 | MTR_3g102870 | 66.000 | 150 | 49 | 2 | 205 | 354 | 1 | 148 | 7.93e-62 | 197 |
MS.gene013053.t1 | MTR_3g101150 | 61.250 | 160 | 56 | 3 | 248 | 403 | 1 | 158 | 6.03e-58 | 187 |
MS.gene013053.t1 | MTR_4g093550 | 63.095 | 84 | 31 | 0 | 18 | 101 | 6 | 89 | 2.45e-27 | 104 |
MS.gene013053.t1 | MTR_6g046890 | 57.500 | 80 | 24 | 2 | 35 | 104 | 16 | 95 | 8.38e-20 | 85.5 |
MS.gene013053.t1 | MTR_3g101140 | 63.768 | 69 | 24 | 1 | 337 | 404 | 48 | 116 | 4.72e-17 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013053.t1 | AT1G47710 | 51.680 | 387 | 184 | 3 | 18 | 402 | 5 | 390 | 1.19e-141 | 409 |
MS.gene013053.t1 | AT1G47710 | 51.680 | 387 | 184 | 3 | 18 | 402 | 32 | 417 | 4.45e-141 | 409 |
MS.gene013053.t1 | AT3G45220 | 47.328 | 393 | 191 | 6 | 18 | 401 | 5 | 390 | 7.44e-125 | 366 |
MS.gene013053.t1 | AT2G25240 | 47.423 | 388 | 190 | 7 | 18 | 401 | 5 | 382 | 5.22e-120 | 353 |
MS.gene013053.t1 | AT2G26390 | 46.096 | 397 | 186 | 9 | 18 | 401 | 5 | 386 | 4.19e-116 | 344 |
MS.gene013053.t1 | AT1G62170 | 41.730 | 393 | 193 | 8 | 18 | 401 | 66 | 431 | 1.58e-102 | 311 |
MS.gene013053.t1 | AT1G64030 | 41.795 | 390 | 198 | 6 | 18 | 401 | 5 | 371 | 4.08e-99 | 300 |
MS.gene013053.t1 | AT2G14540 | 42.821 | 397 | 198 | 7 | 10 | 401 | 25 | 397 | 2.36e-97 | 296 |
MS.gene013053.t1 | AT2G35580 | 40.196 | 408 | 200 | 10 | 1 | 401 | 1 | 371 | 7.72e-97 | 294 |
MS.gene013053.t1 | AT1G62170 | 38.498 | 426 | 193 | 9 | 18 | 401 | 66 | 464 | 2.19e-95 | 293 |
MS.gene013053.t1 | AT1G64010 | 46.364 | 220 | 92 | 5 | 183 | 401 | 1 | 195 | 1.40e-58 | 190 |
MS.gene013053.t1 | AT1G64010 | 44.660 | 206 | 88 | 5 | 197 | 401 | 1 | 181 | 2.55e-50 | 168 |
MS.gene013053.t1 | AT1G62160 | 38.222 | 225 | 105 | 7 | 184 | 401 | 21 | 218 | 3.23e-32 | 121 |
MS.gene013053.t1 | AT1G63280 | 48.696 | 115 | 55 | 2 | 142 | 254 | 8 | 120 | 8.87e-31 | 114 |
MS.gene013053.t1 | AT1G51330 | 47.748 | 111 | 55 | 2 | 141 | 248 | 30 | 140 | 1.41e-25 | 103 |
MS.gene013053.t1 | AT1G64020 | 34.783 | 115 | 66 | 4 | 23 | 132 | 10 | 120 | 6.57e-14 | 68.6 |
Find 96 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAATGCAATGTACTTTAA+AGG | 0.146186 | 3.3:-83462273 | MS.gene013053:CDS |
TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 3.3:-83462374 | MS.gene013053:CDS |
TCATCTTCGCCTTGATTATA+AGG | 0.237108 | 3.3:+83462105 | None:intergenic |
TCCAATAAACCGTTTCTTAT+AGG | 0.238320 | 3.3:+83462158 | None:intergenic |
CTATCTGATGCTGCTTCTTC+TGG | 0.256749 | 3.3:-83463670 | MS.gene013053:CDS |
GAGTAATAATTTCTTTAATA+AGG | 0.258043 | 3.3:+83462331 | None:intergenic |
GTTAGGTTGTTGACTGAATT+TGG | 0.264199 | 3.3:+83462309 | None:intergenic |
TCCTATAAGAAACGGTTTAT+TGG | 0.267830 | 3.3:-83462159 | MS.gene013053:CDS |
TGACGGAGCTACCATTTAAA+AGG | 0.273055 | 3.3:+83462199 | None:intergenic |
CCAAGATTCAATATTTCGTT+TGG | 0.303904 | 3.3:-83461940 | MS.gene013053:CDS |
TGCATTTGCAAATATGAGTT+TGG | 0.309749 | 3.3:+83462287 | None:intergenic |
GTTGAGATGGTCAGTGGATT+TGG | 0.313863 | 3.3:+83463723 | None:intergenic |
AAACTTCTCTAATTAGAAAT+AGG | 0.325707 | 3.3:+83461671 | None:intergenic |
GAAATATGTTGGAAACATAT+AGG | 0.352361 | 3.3:+83461818 | None:intergenic |
TATGAAAACATACCTTGTTC+TGG | 0.356984 | 3.3:+83463530 | None:intergenic |
TCCCACGCAACAACAGCTTC+TGG | 0.368338 | 3.3:-83463758 | MS.gene013053:CDS |
GTCAACTTTGGTTGAGAAGC+TGG | 0.373900 | 3.3:-83462034 | MS.gene013053:CDS |
GAAGGAAGGTTGAAGAGAAA+TGG | 0.376988 | 3.3:+83463603 | None:intergenic |
CTCTTTCATCCAAGGTGTGT+GGG | 0.385352 | 3.3:-83463635 | MS.gene013053:CDS |
GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 3.3:-83462373 | MS.gene013053:CDS |
ATTAGCCACAATTTCTTTGA+AGG | 0.395580 | 3.3:+83463585 | None:intergenic |
CAAGATTCAATATTTCGTTT+GGG | 0.400361 | 3.3:-83461939 | MS.gene013053:CDS |
GGAAACTTTGGTTTGGTTGG+TGG | 0.403182 | 3.3:+83463888 | None:intergenic |
GACAGTCCATCCTTTGCATC+TGG | 0.405033 | 3.3:+83462054 | None:intergenic |
CAGGTGCTCAATCCTCTTGT+TGG | 0.408553 | 3.3:-83461622 | MS.gene013053:CDS |
CTTTGTCTTCCTTATAATCA+AGG | 0.415705 | 3.3:-83462114 | MS.gene013053:CDS |
CCTCATGGCTGCTGCCTCTG+AGG | 0.417264 | 3.3:-83463782 | MS.gene013053:CDS |
CCATGAGGCTGAGCGTAACT+TGG | 0.418916 | 3.3:+83463797 | None:intergenic |
TCCGTTTGTTGATTGATTCA+CGG | 0.423037 | 3.3:+83463938 | None:intergenic |
ACCGGAACAATCCTCTTTGT+TGG | 0.428785 | 3.3:-83461646 | MS.gene013053:CDS |
GACCATGGTAAGGGAAACTT+TGG | 0.431672 | 3.3:+83463876 | None:intergenic |
GAAAGATTTGTGAAATATGT+TGG | 0.433321 | 3.3:+83461807 | None:intergenic |
AACAATCCTCTTTGTTGGGC+AGG | 0.435386 | 3.3:-83461641 | MS.gene013053:CDS |
CTCATGGCTGCTGCCTCTGA+GGG | 0.435904 | 3.3:-83463781 | MS.gene013053:CDS |
TTGCAAATATGAGTTTGGTT+AGG | 0.436046 | 3.3:+83462292 | None:intergenic |
AAGGGAAACTTTGGTTTGGT+TGG | 0.440125 | 3.3:+83463885 | None:intergenic |
CCGGAACAATCCTCTTTGTT+GGG | 0.441601 | 3.3:-83461645 | MS.gene013053:CDS |
CCAAACGAAATATTGAATCT+TGG | 0.448102 | 3.3:+83461940 | None:intergenic |
TAATGATTATAAAGCCACTT+TGG | 0.450703 | 3.3:-83463566 | MS.gene013053:CDS |
CACTTCTTTAATCACTTCAC+TGG | 0.457017 | 3.3:+83462383 | None:intergenic |
TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.3:-83461787 | MS.gene013053:CDS |
CCGTTTGTTGATTGATTCAC+GGG | 0.460807 | 3.3:+83463939 | None:intergenic |
ACTGATACGATGAAGGAGTT+AGG | 0.462036 | 3.3:-83461907 | MS.gene013053:CDS |
CCCAACAAAGAGGATTGTTC+CGG | 0.470616 | 3.3:+83461645 | None:intergenic |
CAGAAGAAGCAGCATCAGAT+AGG | 0.489840 | 3.3:+83463671 | None:intergenic |
AGAGATGTTTGACCATGGTA+AGG | 0.494445 | 3.3:+83463866 | None:intergenic |
TTTCTTATAGGAGGTCATGA+AGG | 0.498012 | 3.3:+83462170 | None:intergenic |
TGGTAAGGGAAACTTTGGTT+TGG | 0.501909 | 3.3:+83463881 | None:intergenic |
ACCTTCCTTCAAAGAAATTG+TGG | 0.502391 | 3.3:-83463590 | MS.gene013053:CDS |
CCTCGCCTCTCTTTCATCCA+AGG | 0.508325 | 3.3:-83463643 | MS.gene013053:CDS |
GTAAAACCTCCAGAAGAGAA+AGG | 0.510977 | 3.3:+83461874 | None:intergenic |
GCCACAATTTCTTTGAAGGA+AGG | 0.512461 | 3.3:+83463589 | None:intergenic |
AATAAACCGTTTCTTATAGG+AGG | 0.518982 | 3.3:+83462161 | None:intergenic |
CCCGTGAATCAATCAACAAA+CGG | 0.520413 | 3.3:-83463939 | MS.gene013053:CDS |
CAATGTACTTTAAAGGAACA+TGG | 0.522199 | 3.3:-83462266 | MS.gene013053:CDS |
TCATGACCTCCTATAAGAAA+CGG | 0.525564 | 3.3:-83462167 | MS.gene013053:CDS |
TCTCTTTCATCCAAGGTGTG+TGG | 0.526400 | 3.3:-83463636 | MS.gene013053:CDS |
CTGATGCTGCTTCTTCTGGC+GGG | 0.527878 | 3.3:-83463666 | MS.gene013053:CDS |
TTTCTTCCAGATGCAAAGGA+TGG | 0.531417 | 3.3:-83462060 | MS.gene013053:CDS |
GACTGAGAAGTTTGATACTT+CGG | 0.537810 | 3.3:-83462244 | MS.gene013053:CDS |
TTCAGTTGATTTCCAGAACA+AGG | 0.543538 | 3.3:-83463542 | MS.gene013053:intron |
TTTGATCAACCCACACACCT+TGG | 0.549446 | 3.3:+83463626 | None:intergenic |
GAATTTATGGGCTGAAGAAG+AGG | 0.549526 | 3.3:-83462361 | MS.gene013053:CDS |
TTCTTATAGGAGGTCATGAA+GGG | 0.550790 | 3.3:+83462171 | None:intergenic |
TCCAGAAGCTGTTGTTGCGT+GGG | 0.552353 | 3.3:+83463757 | None:intergenic |
GTCCAGAAGCTGTTGTTGCG+TGG | 0.552957 | 3.3:+83463756 | None:intergenic |
AAAGGATGGACTGTCAACTT+TGG | 0.555822 | 3.3:-83462046 | MS.gene013053:CDS |
CCAAGTTACGCTCAGCCTCA+TGG | 0.556554 | 3.3:-83463797 | MS.gene013053:CDS |
GGAAACAAGATGAGAGGCGA+TGG | 0.556903 | 3.3:+83463699 | None:intergenic |
GGTCATGAAGGGAACTTTGA+CGG | 0.559017 | 3.3:+83462182 | None:intergenic |
TCTGATGCTGCTTCTTCTGG+CGG | 0.559912 | 3.3:-83463667 | MS.gene013053:CDS |
TGGGCTGAAGAAGAGGCAAA+TGG | 0.561310 | 3.3:-83462354 | MS.gene013053:CDS |
AGCAGCATCAGATAGGATGA+TGG | 0.563820 | 3.3:+83463678 | None:intergenic |
CTAATTAGAGAAGTTTCGAC+CGG | 0.568701 | 3.3:-83461664 | MS.gene013053:CDS |
GAAGTTTGATACTTCGGTAA+CGG | 0.571905 | 3.3:-83462238 | MS.gene013053:CDS |
GAGAGGCGATGGAGTTGAGA+TGG | 0.573677 | 3.3:+83463710 | None:intergenic |
GAAATCAACTGAAGCCAAAG+TGG | 0.575945 | 3.3:+83463552 | None:intergenic |
GGTTGATTCATCGTGAAGGA+CGG | 0.577040 | 3.3:+83463909 | None:intergenic |
AGTTAAGATCATCCAACAAG+AGG | 0.577438 | 3.3:+83461610 | None:intergenic |
TGAAACTACTGATACGATGA+AGG | 0.578251 | 3.3:-83461914 | MS.gene013053:CDS |
GAGATGTTTGACCATGGTAA+GGG | 0.580757 | 3.3:+83463867 | None:intergenic |
TCTCTAATTAGAAATAGGAA+AGG | 0.584531 | 3.3:+83461676 | None:intergenic |
GATGGTCAGTGGATTTGGAT+CGG | 0.592329 | 3.3:+83463728 | None:intergenic |
TTGTTGCGTGGGACCCTCAG+AGG | 0.607840 | 3.3:+83463768 | None:intergenic |
TGAGCACCTGCCCAACAAAG+AGG | 0.624187 | 3.3:+83461635 | None:intergenic |
AACCAAAGTTTCCCTTACCA+TGG | 0.630609 | 3.3:-83463878 | MS.gene013053:CDS |
CCTCAGAGGCAGCAGCCATG+AGG | 0.640062 | 3.3:+83463782 | None:intergenic |
TGGTGGTTGATTCATCGTGA+AGG | 0.640526 | 3.3:+83463905 | None:intergenic |
GATGATGGAAACAAGATGAG+AGG | 0.645061 | 3.3:+83463693 | None:intergenic |
TGAGAAGAGATGTTTGACCA+TGG | 0.646563 | 3.3:+83463861 | None:intergenic |
ACACACCTTGGATGAAAGAG+AGG | 0.656878 | 3.3:+83463638 | None:intergenic |
AGCGTAACTTGGAGTGACAG+CGG | 0.664638 | 3.3:+83463808 | None:intergenic |
GCTACAAAGTCTTCTCGATG+TGG | 0.664760 | 3.3:+83461706 | None:intergenic |
GGTCAGTGGATTTGGATCGG+AGG | 0.671238 | 3.3:+83463731 | None:intergenic |
GATGGAGTTGAGATGGTCAG+TGG | 0.682782 | 3.3:+83463717 | None:intergenic |
CCTTGGATGAAAGAGAGGCG+AGG | 0.711185 | 3.3:+83463643 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAATCAAAATAAAGAAAT+TGG | - | chr3.3:83462512-83462531 | MS.gene013053:intron | 10.0% |
!!! | TTAATTTGATATGATTTTAA+AGG | - | chr3.3:83463158-83463177 | MS.gene013053:intron | 10.0% |
!! | AAAAAACTAATTATTTGTGA+AGG | + | chr3.3:83462205-83462224 | None:intergenic | 15.0% |
!! | GAGTAATAATTTCTTTAATA+AGG | + | chr3.3:83463236-83463255 | None:intergenic | 15.0% |
!!! | AAAAAACTAATAGTTTGTTA+AGG | + | chr3.3:83462131-83462150 | None:intergenic | 15.0% |
!!! | TTCAAATTTTATAGTACAAA+AGG | - | chr3.3:83462905-83462924 | MS.gene013053:intron | 15.0% |
!!! | TTTTATTTCATAACCTAATT+TGG | - | chr3.3:83462236-83462255 | MS.gene013053:CDS | 15.0% |
!! | AAACTTCTCTAATTAGAAAT+AGG | + | chr3.3:83463896-83463915 | None:intergenic | 20.0% |
!! | AATTAACATGAAATAACATG+AGG | + | chr3.3:83462090-83462109 | None:intergenic | 20.0% |
!! | ATCAGAATATAAAACAATCA+AGG | + | chr3.3:83462795-83462814 | None:intergenic | 20.0% |
!! | ATTAACATGAAATAACATGA+GGG | + | chr3.3:83462089-83462108 | None:intergenic | 20.0% |
!! | GATTAAAGAAGTGAATTTAT+GGG | - | chr3.3:83463191-83463210 | MS.gene013053:intron | 20.0% |
!! | GTGAAAATTATGTTAACAAA+AGG | - | chr3.3:83463072-83463091 | MS.gene013053:intron | 20.0% |
!! | TAATACAATGCTAAATTAGT+TGG | + | chr3.3:83463051-83463070 | None:intergenic | 20.0% |
!! | TCAGAATATAAAACAATCAA+GGG | + | chr3.3:83462794-83462813 | None:intergenic | 20.0% |
!! | TGATTAAAGAAGTGAATTTA+TGG | - | chr3.3:83463190-83463209 | MS.gene013053:intron | 20.0% |
!! | TTGTACTATAAAATTTGAAG+AGG | + | chr3.3:83462904-83462923 | None:intergenic | 20.0% |
!!! | AGTGATTTTTACCTTTTAAA+TGG | - | chr3.3:83463354-83463373 | MS.gene013053:intron | 20.0% |
!!! | CTCTAAAATTATTTTAGATG+AGG | + | chr3.3:83462960-83462979 | None:intergenic | 20.0% |
! | AAATAAAGAAATTGGACAGA+TGG | - | chr3.3:83462520-83462539 | MS.gene013053:intron | 25.0% |
! | AATAAAGAAATTGGACAGAT+GGG | - | chr3.3:83462521-83462540 | MS.gene013053:intron | 25.0% |
! | AATAACGTTAGATCCAAATT+AGG | + | chr3.3:83462252-83462271 | None:intergenic | 25.0% |
! | AGCACAAATAATATTTGTGT+TGG | - | chr3.3:83462282-83462301 | MS.gene013053:CDS | 25.0% |
! | ATACACACTATTCAAAATGA+TGG | + | chr3.3:83462573-83462592 | None:intergenic | 25.0% |
! | CAAGATTCAATATTTCGTTT+GGG | - | chr3.3:83463625-83463644 | MS.gene013053:CDS | 25.0% |
! | CTTATTAAAAAAGTGGAAGT+AGG | - | chr3.3:83463588-83463607 | MS.gene013053:CDS | 25.0% |
! | GAAAGATTTGTGAAATATGT+TGG | + | chr3.3:83463760-83463779 | None:intergenic | 25.0% |
! | GAAATATGTTGGAAACATAT+AGG | + | chr3.3:83463749-83463768 | None:intergenic | 25.0% |
! | GCTTAAACATATTTGCATAT+TGG | - | chr3.3:83462425-83462444 | MS.gene013053:intron | 25.0% |
! | TAATGATTATAAAGCCACTT+TGG | - | chr3.3:83461998-83462017 | MS.gene013053:CDS | 25.0% |
! | TACACACTATTCAAAATGAT+GGG | + | chr3.3:83462572-83462591 | None:intergenic | 25.0% |
! | TCTCTAATTAGAAATAGGAA+AGG | + | chr3.3:83463891-83463910 | None:intergenic | 25.0% |
! | TCTTCCTCTTATTAAAAAAG+TGG | - | chr3.3:83463581-83463600 | MS.gene013053:CDS | 25.0% |
! | TTAATATATGGAGTGGAAAT+AGG | + | chr3.3:83462064-83462083 | None:intergenic | 25.0% |
! | TTCATTGAAGTAAATGAAGA+AGG | - | chr3.3:83463777-83463796 | MS.gene013053:CDS | 25.0% |
!! | CATTTTGAATAGTGTGTATT+TGG | - | chr3.3:83462574-83462593 | MS.gene013053:intron | 25.0% |
!! | GTATGAATTTGCTTTATATG+CGG | - | chr3.3:83462599-83462618 | MS.gene013053:intron | 25.0% |
!! | TGCTTTGATCAATTTAGAAT+TGG | + | chr3.3:83462845-83462864 | None:intergenic | 25.0% |
!!! | ACTTCCACTTTTTTAATAAG+AGG | + | chr3.3:83463588-83463607 | None:intergenic | 25.0% |
AATAAACCGTTTCTTATAGG+AGG | + | chr3.3:83463406-83463425 | None:intergenic | 30.0% | |
ACAAAGGTTTGTCACATATA+TGG | + | chr3.3:83462871-83462890 | None:intergenic | 30.0% | |
ATCTAGAAAACAGAAAGGAT+AGG | + | chr3.3:83463028-83463047 | None:intergenic | 30.0% | |
ATTAGCCACAATTTCTTTGA+AGG | + | chr3.3:83461982-83462001 | None:intergenic | 30.0% | |
CCAAACGAAATATTGAATCT+TGG | + | chr3.3:83463627-83463646 | None:intergenic | 30.0% | |
CCAAGATTCAATATTTCGTT+TGG | - | chr3.3:83463624-83463643 | MS.gene013053:CDS | 30.0% | |
CTTTGTCTTCCTTATAATCA+AGG | - | chr3.3:83463450-83463469 | MS.gene013053:intron | 30.0% | |
GCAAATGCAATGTACTTTAA+AGG | - | chr3.3:83463291-83463310 | MS.gene013053:intron | 30.0% | |
TATGAAAACATACCTTGTTC+TGG | + | chr3.3:83462037-83462056 | None:intergenic | 30.0% | |
TCCAATAAACCGTTTCTTAT+AGG | + | chr3.3:83463409-83463428 | None:intergenic | 30.0% | |
TCCTATAAGAAACGGTTTAT+TGG | - | chr3.3:83463405-83463424 | MS.gene013053:intron | 30.0% | |
TGCATTTGCAAATATGAGTT+TGG | + | chr3.3:83463280-83463299 | None:intergenic | 30.0% | |
TGGGAAAACATTATACATAC+AGG | + | chr3.3:83462553-83462572 | None:intergenic | 30.0% | |
TTGCAAATATGAGTTTGGTT+AGG | + | chr3.3:83463275-83463294 | None:intergenic | 30.0% | |
TTTGAATAGTGTGTATTTGG+AGG | - | chr3.3:83462577-83462596 | MS.gene013053:intron | 30.0% | |
! | ACATGAGACCTTAATGTTTT+AGG | - | chr3.3:83462335-83462354 | MS.gene013053:CDS | 30.0% |
! | CAATGTACTTTAAAGGAACA+TGG | - | chr3.3:83463298-83463317 | MS.gene013053:intron | 30.0% |
! | TATTTTTCTTCCAGATGCAA+AGG | - | chr3.3:83463500-83463519 | MS.gene013053:intron | 30.0% |
!! | AACATGAGGGCATTAATATA+TGG | + | chr3.3:83462076-83462095 | None:intergenic | 30.0% |
!! | TCTTTGTTGGAGTTTGTTTT+CGG | + | chr3.3:83462630-83462649 | None:intergenic | 30.0% |
!! | TTCTGGAGGTTTTACAAAAA+TGG | - | chr3.3:83463698-83463717 | MS.gene013053:CDS | 30.0% |
!!! | GGGGTGATATTTATTTTGAT+GGG | + | chr3.3:83462686-83462705 | None:intergenic | 30.0% |
ACCTTCCTTCAAAGAAATTG+TGG | - | chr3.3:83461974-83461993 | MS.gene013053:CDS | 35.0% | |
ATGCAAATATGTTTAAGCGC+TGG | + | chr3.3:83462423-83462442 | None:intergenic | 35.0% | |
CACTTCTTTAATCACTTCAC+TGG | + | chr3.3:83463184-83463203 | None:intergenic | 35.0% | |
CCAACCAACCTAAAACATTA+AGG | + | chr3.3:83462346-83462365 | None:intergenic | 35.0% | |
CTAATTAGAGAAGTTTCGAC+CGG | - | chr3.3:83463900-83463919 | MS.gene013053:CDS | 35.0% | |
GAAGTTTGATACTTCGGTAA+CGG | - | chr3.3:83463326-83463345 | MS.gene013053:intron | 35.0% | |
GACTGAGAAGTTTGATACTT+CGG | - | chr3.3:83463320-83463339 | MS.gene013053:intron | 35.0% | |
GGTAATTACCAAAGTCATGA+AGG | + | chr3.3:83462824-83462843 | None:intergenic | 35.0% | |
GTTGGATCTAGAAAACAGAA+AGG | + | chr3.3:83463033-83463052 | None:intergenic | 35.0% | |
TCATCTTCGCCTTGATTATA+AGG | + | chr3.3:83463462-83463481 | None:intergenic | 35.0% | |
TCATGACCTCCTATAAGAAA+CGG | - | chr3.3:83463397-83463416 | MS.gene013053:intron | 35.0% | |
TGAAACTACTGATACGATGA+AGG | - | chr3.3:83463650-83463669 | MS.gene013053:CDS | 35.0% | |
TTCAGTGGTCAAGTAAGTAT+AGG | + | chr3.3:83462724-83462743 | None:intergenic | 35.0% | |
TTCTTATAGGAGGTCATGAA+GGG | + | chr3.3:83463396-83463415 | None:intergenic | 35.0% | |
TTTCTTATAGGAGGTCATGA+AGG | + | chr3.3:83463397-83463416 | None:intergenic | 35.0% | |
! | ATTTTACCTTTCTCTTCTGG+AGG | - | chr3.3:83463684-83463703 | MS.gene013053:CDS | 35.0% |
! | CGGTTTATTGGAGATTTTGA+TGG | - | chr3.3:83463417-83463436 | MS.gene013053:intron | 35.0% |
! | GTGATTTTACCTTTCTCTTC+TGG | - | chr3.3:83463681-83463700 | MS.gene013053:CDS | 35.0% |
! | GTTAGGTTGTTGACTGAATT+TGG | + | chr3.3:83463258-83463277 | None:intergenic | 35.0% |
! | TCCGTTTGTTGATTGATTCA+CGG | + | chr3.3:83461629-83461648 | None:intergenic | 35.0% |
! | TGGAGGTTTTACAAAAATGG+TGG | - | chr3.3:83463701-83463720 | MS.gene013053:CDS | 35.0% |
! | TTCAGTTGATTTCCAGAACA+AGG | - | chr3.3:83462022-83462041 | MS.gene013053:CDS | 35.0% |
!! | AAGAGGCGTTTCAATAACAA+AGG | + | chr3.3:83462887-83462906 | None:intergenic | 35.0% |
!! | CTTTGTTGGAGTTTGTTTTC+GGG | + | chr3.3:83462629-83462648 | None:intergenic | 35.0% |
!! | GAGACCTTAATGTTTTAGGT+TGG | - | chr3.3:83462339-83462358 | MS.gene013053:CDS | 35.0% |
!!! | AACAATCAAGGGTGTTCTTT+TGG | + | chr3.3:83462783-83462802 | None:intergenic | 35.0% |
!!! | AATGGTGGATTCTTCTTTTG+TGG | - | chr3.3:83463716-83463735 | MS.gene013053:CDS | 35.0% |
!!! | ACAATCAAGGGTGTTCTTTT+GGG | + | chr3.3:83462782-83462801 | None:intergenic | 35.0% |
!!! | ATGGTGGATTCTTCTTTTGT+GGG | - | chr3.3:83463717-83463736 | MS.gene013053:CDS | 35.0% |
!!! | CCTTAATGTTTTAGGTTGGT+TGG | - | chr3.3:83462343-83462362 | MS.gene013053:CDS | 35.0% |
!!! | GGGGGTGATATTTATTTTGA+TGG | + | chr3.3:83462687-83462706 | None:intergenic | 35.0% |
!!! | TATAGGAGTTGGTGGTTTTA+GGG | + | chr3.3:83462707-83462726 | None:intergenic | 35.0% |
!!! | TTATGGATGTCGTTTTTCAG+TGG | + | chr3.3:83462739-83462758 | None:intergenic | 35.0% |
AAAGAAATTGGACAGATGGG+TGG | - | chr3.3:83462524-83462543 | MS.gene013053:intron | 40.0% | |
AACCAAAGTTTCCCTTACCA+TGG | - | chr3.3:83461686-83461705 | MS.gene013053:CDS | 40.0% | |
ACTGATACGATGAAGGAGTT+AGG | - | chr3.3:83463657-83463676 | MS.gene013053:CDS | 40.0% | |
AGAGATGTTTGACCATGGTA+AGG | + | chr3.3:83461701-83461720 | None:intergenic | 40.0% | |
ATAGCACACCTTCATGACTT+TGG | - | chr3.3:83462813-83462832 | MS.gene013053:intron | 40.0% | |
CAAGTAAGTATAGGAGTTGG+TGG | + | chr3.3:83462715-83462734 | None:intergenic | 40.0% | |
CCCGTGAATCAATCAACAAA+CGG | - | chr3.3:83461625-83461644 | MS.gene013053:CDS | 40.0% | |
GAAATCAACTGAAGCCAAAG+TGG | + | chr3.3:83462015-83462034 | None:intergenic | 40.0% | |
GAAGGAAGGTTGAAGAGAAA+TGG | + | chr3.3:83461964-83461983 | None:intergenic | 40.0% | |
GAGATGTTTGACCATGGTAA+GGG | + | chr3.3:83461700-83461719 | None:intergenic | 40.0% | |
GGTCAAGTAAGTATAGGAGT+TGG | + | chr3.3:83462718-83462737 | None:intergenic | 40.0% | |
GTAAAACCTCCAGAAGAGAA+AGG | + | chr3.3:83463693-83463712 | None:intergenic | 40.0% | |
GTGTGTGTGTGTATATAGCA+TGG | - | chr3.3:83462375-83462394 | MS.gene013053:CDS | 40.0% | |
TGACGGAGCTACCATTTAAA+AGG | + | chr3.3:83463368-83463387 | None:intergenic | 40.0% | |
TGAGAAGAGATGTTTGACCA+TGG | + | chr3.3:83461706-83461725 | None:intergenic | 40.0% | |
TGGTAAGGGAAACTTTGGTT+TGG | + | chr3.3:83461686-83461705 | None:intergenic | 40.0% | |
TTTCTTCCAGATGCAAAGGA+TGG | - | chr3.3:83463504-83463523 | MS.gene013053:intron | 40.0% | |
! | CCGTTTGTTGATTGATTCAC+GGG | + | chr3.3:83461628-83461647 | None:intergenic | 40.0% |
! | GAATTTATGGGCTGAAGAAG+AGG | - | chr3.3:83463203-83463222 | MS.gene013053:intron | 40.0% |
! | GCCACAATTTCTTTGAAGGA+AGG | + | chr3.3:83461978-83461997 | None:intergenic | 40.0% |
! | GGTAGAACTTGCTCTAAATC+AGG | + | chr3.3:83462184-83462203 | None:intergenic | 40.0% |
! | TGATGGGTGTTGTCCTTTAT+GGG | + | chr3.3:83462670-83462689 | None:intergenic | 40.0% |
! | TTGATGGGTGTTGTCCTTTA+TGG | + | chr3.3:83462671-83462690 | None:intergenic | 40.0% |
!! | AAAGGATGGACTGTCAACTT+TGG | - | chr3.3:83463518-83463537 | MS.gene013053:intron | 40.0% |
!! | AAGGGAAACTTTGGTTTGGT+TGG | + | chr3.3:83461682-83461701 | None:intergenic | 40.0% |
!! | GAGGGCATTAATATATGGAG+TGG | + | chr3.3:83462071-83462090 | None:intergenic | 40.0% |
!! | GATGATGGAAACAAGATGAG+AGG | + | chr3.3:83461874-83461893 | None:intergenic | 40.0% |
!!! | ATAGGAGTTGGTGGTTTTAG+GGG | + | chr3.3:83462706-83462725 | None:intergenic | 40.0% |
!!! | CAATCAAGGGTGTTCTTTTG+GGG | + | chr3.3:83462781-83462800 | None:intergenic | 40.0% |
!!! | GTATAGGAGTTGGTGGTTTT+AGG | + | chr3.3:83462708-83462727 | None:intergenic | 40.0% |
AACAATCCTCTTTGTTGGGC+AGG | - | chr3.3:83463923-83463942 | MS.gene013053:CDS | 45.0% | |
ACACACCTTGGATGAAAGAG+AGG | + | chr3.3:83461929-83461948 | None:intergenic | 45.0% | |
ACCGGAACAATCCTCTTTGT+TGG | - | chr3.3:83463918-83463937 | MS.gene013053:CDS | 45.0% | |
AGCAGCATCAGATAGGATGA+TGG | + | chr3.3:83461889-83461908 | None:intergenic | 45.0% | |
AGTAGTGGCGACGATTGTTA+TGG | + | chr3.3:83462756-83462775 | None:intergenic | 45.0% | |
CAGAAGAAGCAGCATCAGAT+AGG | + | chr3.3:83461896-83461915 | None:intergenic | 45.0% | |
CCCAACAAAGAGGATTGTTC+CGG | + | chr3.3:83463922-83463941 | None:intergenic | 45.0% | |
CCGGAACAATCCTCTTTGTT+GGG | - | chr3.3:83463919-83463938 | MS.gene013053:CDS | 45.0% | |
CCTACGATCAACACCCATAA+AGG | - | chr3.3:83462654-83462673 | MS.gene013053:intron | 45.0% | |
CTCTTTCATCCAAGGTGTGT+GGG | - | chr3.3:83461929-83461948 | MS.gene013053:CDS | 45.0% | |
GACCATGGTAAGGGAAACTT+TGG | + | chr3.3:83461691-83461710 | None:intergenic | 45.0% | |
GATCGTAGGTGTGTCTTTGT+TGG | + | chr3.3:83462643-83462662 | None:intergenic | 45.0% | |
GCTACAAAGTCTTCTCGATG+TGG | + | chr3.3:83463861-83463880 | None:intergenic | 45.0% | |
GGTCATGAAGGGAACTTTGA+CGG | + | chr3.3:83463385-83463404 | None:intergenic | 45.0% | |
GTCAACTTTGGTTGAGAAGC+TGG | - | chr3.3:83463530-83463549 | MS.gene013053:intron | 45.0% | |
TCTCTTTCATCCAAGGTGTG+TGG | - | chr3.3:83461928-83461947 | MS.gene013053:CDS | 45.0% | |
TTTGATCAACCCACACACCT+TGG | + | chr3.3:83461941-83461960 | None:intergenic | 45.0% | |
! | CTATCTGATGCTGCTTCTTC+TGG | - | chr3.3:83461894-83461913 | MS.gene013053:CDS | 45.0% |
! | GATGGTCAGTGGATTTGGAT+CGG | + | chr3.3:83461839-83461858 | None:intergenic | 45.0% |
! | GGTTGATTCATCGTGAAGGA+CGG | + | chr3.3:83461658-83461677 | None:intergenic | 45.0% |
! | GTTGAGATGGTCAGTGGATT+TGG | + | chr3.3:83461844-83461863 | None:intergenic | 45.0% |
! | TGGTGGTTGATTCATCGTGA+AGG | + | chr3.3:83461662-83461681 | None:intergenic | 45.0% |
!! | CCTTTATGGGTGTTGATCGT+AGG | + | chr3.3:83462657-83462676 | None:intergenic | 45.0% |
!! | GGAAACTTTGGTTTGGTTGG+TGG | + | chr3.3:83461679-83461698 | None:intergenic | 45.0% |
!!! | TAGGAGTTGGTGGTTTTAGG+GGG | + | chr3.3:83462705-83462724 | None:intergenic | 45.0% |
!!! | TGTTCTTTTGGGGTGAGTAG+TGG | + | chr3.3:83462771-83462790 | None:intergenic | 45.0% |
!! | AAATTATACTTATAAAAATT+TGG | + | chr3.3:83462494-83462513 | None:intergenic | 5.0% |
AGCGTAACTTGGAGTGACAG+CGG | + | chr3.3:83461759-83461778 | None:intergenic | 50.0% | |
CAGGTGCTCAATCCTCTTGT+TGG | - | chr3.3:83463942-83463961 | MS.gene013053:CDS | 50.0% | |
GACAGTCCATCCTTTGCATC+TGG | + | chr3.3:83463513-83463532 | None:intergenic | 50.0% | |
GAGGCGTATGCTAAAGTAGC+AGG | + | chr3.3:83462941-83462960 | None:intergenic | 50.0% | |
GATGGAGTTGAGATGGTCAG+TGG | + | chr3.3:83461850-83461869 | None:intergenic | 50.0% | |
GGAAACAAGATGAGAGGCGA+TGG | + | chr3.3:83461868-83461887 | None:intergenic | 50.0% | |
TCCAGAAGCTGTTGTTGCGT+GGG | + | chr3.3:83461810-83461829 | None:intergenic | 50.0% | |
TGGGCTGAAGAAGAGGCAAA+TGG | - | chr3.3:83463210-83463229 | MS.gene013053:intron | 50.0% | |
! | TCTGATGCTGCTTCTTCTGG+CGG | - | chr3.3:83461897-83461916 | MS.gene013053:CDS | 50.0% |
CCAAGTTACGCTCAGCCTCA+TGG | - | chr3.3:83461767-83461786 | MS.gene013053:CDS | 55.0% | |
CCATGAGGCTGAGCGTAACT+TGG | + | chr3.3:83461770-83461789 | None:intergenic | 55.0% | |
CCTCGCCTCTCTTTCATCCA+AGG | - | chr3.3:83461921-83461940 | MS.gene013053:CDS | 55.0% | |
CCTTGGATGAAAGAGAGGCG+AGG | + | chr3.3:83461924-83461943 | None:intergenic | 55.0% | |
GAGAGGCGATGGAGTTGAGA+TGG | + | chr3.3:83461857-83461876 | None:intergenic | 55.0% | |
GTCCAGAAGCTGTTGTTGCG+TGG | + | chr3.3:83461811-83461830 | None:intergenic | 55.0% | |
TCCCACGCAACAACAGCTTC+TGG | - | chr3.3:83461806-83461825 | MS.gene013053:CDS | 55.0% | |
TGAGCACCTGCCCAACAAAG+AGG | + | chr3.3:83463932-83463951 | None:intergenic | 55.0% | |
! | CTGATGCTGCTTCTTCTGGC+GGG | - | chr3.3:83461898-83461917 | MS.gene013053:CDS | 55.0% |
! | GGTCAGTGGATTTGGATCGG+AGG | + | chr3.3:83461836-83461855 | None:intergenic | 55.0% |
CTCATGGCTGCTGCCTCTGA+GGG | - | chr3.3:83461783-83461802 | MS.gene013053:CDS | 60.0% | |
TTGTTGCGTGGGACCCTCAG+AGG | + | chr3.3:83461799-83461818 | None:intergenic | 60.0% | |
CCTCAGAGGCAGCAGCCATG+AGG | + | chr3.3:83461785-83461804 | None:intergenic | 65.0% | |
CCTCATGGCTGCTGCCTCTG+AGG | - | chr3.3:83461782-83461801 | MS.gene013053:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 83461618 | 83463968 | 83461618 | ID=MS.gene013053 |
chr3.3 | mRNA | 83461618 | 83463968 | 83461618 | ID=MS.gene013053.t1;Parent=MS.gene013053 |
chr3.3 | exon | 83463543 | 83463968 | 83463543 | ID=MS.gene013053.t1.exon1;Parent=MS.gene013053.t1 |
chr3.3 | CDS | 83463543 | 83463968 | 83463543 | ID=cds.MS.gene013053.t1;Parent=MS.gene013053.t1 |
chr3.3 | exon | 83461618 | 83462406 | 83461618 | ID=MS.gene013053.t1.exon2;Parent=MS.gene013053.t1 |
chr3.3 | CDS | 83461618 | 83462406 | 83461618 | ID=cds.MS.gene013053.t1;Parent=MS.gene013053.t1 |
Gene Sequence |
Protein sequence |