AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013053


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013053.t1 MTR_8g027395 69.773 397 113 4 9 404 7 397 0.0 545
MS.gene013053.t1 MTR_3g101010 71.576 387 108 2 18 404 5 389 0.0 539
MS.gene013053.t1 MTR_3g018740 69.666 389 112 4 15 402 3 386 0.0 531
MS.gene013053.t1 MTR_4g045707 66.925 387 124 4 18 404 6 388 0.0 511
MS.gene013053.t1 MTR_8g027420 65.206 388 118 4 17 404 5 375 3.32e-172 486
MS.gene013053.t1 MTR_3g101030 61.634 404 133 5 19 404 30 429 1.30e-171 486
MS.gene013053.t1 MTR_2g045980 64.175 388 130 4 18 402 5 386 4.58e-171 483
MS.gene013053.t1 MTR_2g046030 64.175 388 130 4 18 402 5 386 6.50e-171 483
MS.gene013053.t1 MTR_8g461160 64.010 389 134 4 18 402 6 392 3.87e-170 481
MS.gene013053.t1 MTR_4g088535 63.144 388 121 4 16 403 5 370 4.69e-169 478
MS.gene013053.t1 MTR_3g101180 61.905 399 140 6 15 403 3 399 6.88e-169 478
MS.gene013053.t1 MTR_3g048000 60.437 412 133 5 1 403 1 391 1.05e-167 475
MS.gene013053.t1 MTR_7g451890 60.448 402 150 5 10 404 3 402 4.59e-167 474
MS.gene013053.t1 MTR_4g088525 65.312 369 118 4 37 403 8 368 2.37e-166 471
MS.gene013053.t1 MTR_7g050750 61.381 391 145 4 18 404 8 396 2.24e-164 467
MS.gene013053.t1 MTR_3g101130 60.459 392 146 4 16 404 4 389 1.00e-163 465
MS.gene013053.t1 MTR_7g047780 60.199 402 151 5 10 404 3 402 2.18e-163 464
MS.gene013053.t1 MTR_7g050810 59.214 407 149 6 9 404 4 404 5.62e-160 456
MS.gene013053.t1 MTR_3g015620 61.084 406 126 6 1 402 1 378 4.71e-158 450
MS.gene013053.t1 MTR_3g101050 62.183 394 124 9 14 402 23 396 2.75e-149 429
MS.gene013053.t1 MTR_3g102920 56.188 404 130 7 10 403 43 409 3.97e-140 406
MS.gene013053.t1 MTR_3g100520 84.685 222 21 1 183 404 1 209 3.94e-133 380
MS.gene013053.t1 MTR_3g101200 52.525 396 159 5 10 403 23 391 4.45e-125 367
MS.gene013053.t1 MTR_3g101190 54.521 365 101 5 40 404 13 312 1.16e-124 363
MS.gene013053.t1 MTR_3g100995 66.148 257 80 4 149 404 14 264 4.47e-119 347
MS.gene013053.t1 MTR_3g100010 52.260 354 111 6 7 320 1 336 5.44e-110 327
MS.gene013053.t1 MTR_7g050830 51.840 326 121 5 9 310 5 318 6.18e-106 316
MS.gene013053.t1 MTR_3g018747 63.359 262 78 4 142 402 9 253 1.60e-105 312
MS.gene013053.t1 MTR_3g015760 56.250 288 106 5 123 402 4 279 5.85e-101 301
MS.gene013053.t1 MTR_3g111160 65.919 223 72 3 183 404 1 220 1.57e-88 267
MS.gene013053.t1 MTR_3g101110 57.741 239 67 4 145 378 71 280 1.53e-85 262
MS.gene013053.t1 MTR_3g114310 41.266 395 211 11 23 404 24 410 2.26e-84 263
MS.gene013053.t1 MTR_2g046410 63.768 207 69 3 199 402 144 347 1.27e-80 251
MS.gene013053.t1 MTR_3g099970 60.606 198 59 3 142 339 20 198 2.86e-79 243
MS.gene013053.t1 MTR_3g111150 57.222 180 49 2 21 198 2 155 7.45e-65 205
MS.gene013053.t1 MTR_3g101020 56.842 190 51 4 216 404 1 160 1.71e-63 201
MS.gene013053.t1 MTR_3g100990 82.677 127 22 0 16 142 3 129 4.95e-62 208
MS.gene013053.t1 MTR_3g102870 66.000 150 49 2 205 354 1 148 7.93e-62 197
MS.gene013053.t1 MTR_3g101150 61.250 160 56 3 248 403 1 158 6.03e-58 187
MS.gene013053.t1 MTR_4g093550 63.095 84 31 0 18 101 6 89 2.45e-27 104
MS.gene013053.t1 MTR_6g046890 57.500 80 24 2 35 104 16 95 8.38e-20 85.5
MS.gene013053.t1 MTR_3g101140 63.768 69 24 1 337 404 48 116 4.72e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013053.t1 AT1G47710 51.680 387 184 3 18 402 5 390 1.19e-141 409
MS.gene013053.t1 AT1G47710 51.680 387 184 3 18 402 32 417 4.45e-141 409
MS.gene013053.t1 AT3G45220 47.328 393 191 6 18 401 5 390 7.44e-125 366
MS.gene013053.t1 AT2G25240 47.423 388 190 7 18 401 5 382 5.22e-120 353
MS.gene013053.t1 AT2G26390 46.096 397 186 9 18 401 5 386 4.19e-116 344
MS.gene013053.t1 AT1G62170 41.730 393 193 8 18 401 66 431 1.58e-102 311
MS.gene013053.t1 AT1G64030 41.795 390 198 6 18 401 5 371 4.08e-99 300
MS.gene013053.t1 AT2G14540 42.821 397 198 7 10 401 25 397 2.36e-97 296
MS.gene013053.t1 AT2G35580 40.196 408 200 10 1 401 1 371 7.72e-97 294
MS.gene013053.t1 AT1G62170 38.498 426 193 9 18 401 66 464 2.19e-95 293
MS.gene013053.t1 AT1G64010 46.364 220 92 5 183 401 1 195 1.40e-58 190
MS.gene013053.t1 AT1G64010 44.660 206 88 5 197 401 1 181 2.55e-50 168
MS.gene013053.t1 AT1G62160 38.222 225 105 7 184 401 21 218 3.23e-32 121
MS.gene013053.t1 AT1G63280 48.696 115 55 2 142 254 8 120 8.87e-31 114
MS.gene013053.t1 AT1G51330 47.748 111 55 2 141 248 30 140 1.41e-25 103
MS.gene013053.t1 AT1G64020 34.783 115 66 4 23 132 10 120 6.57e-14 68.6

Find 96 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCAATGTACTTTAA+AGG 0.146186 3.3:-83462273 MS.gene013053:CDS
TGATTAAAGAAGTGAATTTA+TGG 0.223064 3.3:-83462374 MS.gene013053:CDS
TCATCTTCGCCTTGATTATA+AGG 0.237108 3.3:+83462105 None:intergenic
TCCAATAAACCGTTTCTTAT+AGG 0.238320 3.3:+83462158 None:intergenic
CTATCTGATGCTGCTTCTTC+TGG 0.256749 3.3:-83463670 MS.gene013053:CDS
GAGTAATAATTTCTTTAATA+AGG 0.258043 3.3:+83462331 None:intergenic
GTTAGGTTGTTGACTGAATT+TGG 0.264199 3.3:+83462309 None:intergenic
TCCTATAAGAAACGGTTTAT+TGG 0.267830 3.3:-83462159 MS.gene013053:CDS
TGACGGAGCTACCATTTAAA+AGG 0.273055 3.3:+83462199 None:intergenic
CCAAGATTCAATATTTCGTT+TGG 0.303904 3.3:-83461940 MS.gene013053:CDS
TGCATTTGCAAATATGAGTT+TGG 0.309749 3.3:+83462287 None:intergenic
GTTGAGATGGTCAGTGGATT+TGG 0.313863 3.3:+83463723 None:intergenic
AAACTTCTCTAATTAGAAAT+AGG 0.325707 3.3:+83461671 None:intergenic
GAAATATGTTGGAAACATAT+AGG 0.352361 3.3:+83461818 None:intergenic
TATGAAAACATACCTTGTTC+TGG 0.356984 3.3:+83463530 None:intergenic
TCCCACGCAACAACAGCTTC+TGG 0.368338 3.3:-83463758 MS.gene013053:CDS
GTCAACTTTGGTTGAGAAGC+TGG 0.373900 3.3:-83462034 MS.gene013053:CDS
GAAGGAAGGTTGAAGAGAAA+TGG 0.376988 3.3:+83463603 None:intergenic
CTCTTTCATCCAAGGTGTGT+GGG 0.385352 3.3:-83463635 MS.gene013053:CDS
GATTAAAGAAGTGAATTTAT+GGG 0.386003 3.3:-83462373 MS.gene013053:CDS
ATTAGCCACAATTTCTTTGA+AGG 0.395580 3.3:+83463585 None:intergenic
CAAGATTCAATATTTCGTTT+GGG 0.400361 3.3:-83461939 MS.gene013053:CDS
GGAAACTTTGGTTTGGTTGG+TGG 0.403182 3.3:+83463888 None:intergenic
GACAGTCCATCCTTTGCATC+TGG 0.405033 3.3:+83462054 None:intergenic
CAGGTGCTCAATCCTCTTGT+TGG 0.408553 3.3:-83461622 MS.gene013053:CDS
CTTTGTCTTCCTTATAATCA+AGG 0.415705 3.3:-83462114 MS.gene013053:CDS
CCTCATGGCTGCTGCCTCTG+AGG 0.417264 3.3:-83463782 MS.gene013053:CDS
CCATGAGGCTGAGCGTAACT+TGG 0.418916 3.3:+83463797 None:intergenic
TCCGTTTGTTGATTGATTCA+CGG 0.423037 3.3:+83463938 None:intergenic
ACCGGAACAATCCTCTTTGT+TGG 0.428785 3.3:-83461646 MS.gene013053:CDS
GACCATGGTAAGGGAAACTT+TGG 0.431672 3.3:+83463876 None:intergenic
GAAAGATTTGTGAAATATGT+TGG 0.433321 3.3:+83461807 None:intergenic
AACAATCCTCTTTGTTGGGC+AGG 0.435386 3.3:-83461641 MS.gene013053:CDS
CTCATGGCTGCTGCCTCTGA+GGG 0.435904 3.3:-83463781 MS.gene013053:CDS
TTGCAAATATGAGTTTGGTT+AGG 0.436046 3.3:+83462292 None:intergenic
AAGGGAAACTTTGGTTTGGT+TGG 0.440125 3.3:+83463885 None:intergenic
CCGGAACAATCCTCTTTGTT+GGG 0.441601 3.3:-83461645 MS.gene013053:CDS
CCAAACGAAATATTGAATCT+TGG 0.448102 3.3:+83461940 None:intergenic
TAATGATTATAAAGCCACTT+TGG 0.450703 3.3:-83463566 MS.gene013053:CDS
CACTTCTTTAATCACTTCAC+TGG 0.457017 3.3:+83462383 None:intergenic
TTCATTGAAGTAAATGAAGA+AGG 0.457204 3.3:-83461787 MS.gene013053:CDS
CCGTTTGTTGATTGATTCAC+GGG 0.460807 3.3:+83463939 None:intergenic
ACTGATACGATGAAGGAGTT+AGG 0.462036 3.3:-83461907 MS.gene013053:CDS
CCCAACAAAGAGGATTGTTC+CGG 0.470616 3.3:+83461645 None:intergenic
CAGAAGAAGCAGCATCAGAT+AGG 0.489840 3.3:+83463671 None:intergenic
AGAGATGTTTGACCATGGTA+AGG 0.494445 3.3:+83463866 None:intergenic
TTTCTTATAGGAGGTCATGA+AGG 0.498012 3.3:+83462170 None:intergenic
TGGTAAGGGAAACTTTGGTT+TGG 0.501909 3.3:+83463881 None:intergenic
ACCTTCCTTCAAAGAAATTG+TGG 0.502391 3.3:-83463590 MS.gene013053:CDS
CCTCGCCTCTCTTTCATCCA+AGG 0.508325 3.3:-83463643 MS.gene013053:CDS
GTAAAACCTCCAGAAGAGAA+AGG 0.510977 3.3:+83461874 None:intergenic
GCCACAATTTCTTTGAAGGA+AGG 0.512461 3.3:+83463589 None:intergenic
AATAAACCGTTTCTTATAGG+AGG 0.518982 3.3:+83462161 None:intergenic
CCCGTGAATCAATCAACAAA+CGG 0.520413 3.3:-83463939 MS.gene013053:CDS
CAATGTACTTTAAAGGAACA+TGG 0.522199 3.3:-83462266 MS.gene013053:CDS
TCATGACCTCCTATAAGAAA+CGG 0.525564 3.3:-83462167 MS.gene013053:CDS
TCTCTTTCATCCAAGGTGTG+TGG 0.526400 3.3:-83463636 MS.gene013053:CDS
CTGATGCTGCTTCTTCTGGC+GGG 0.527878 3.3:-83463666 MS.gene013053:CDS
TTTCTTCCAGATGCAAAGGA+TGG 0.531417 3.3:-83462060 MS.gene013053:CDS
GACTGAGAAGTTTGATACTT+CGG 0.537810 3.3:-83462244 MS.gene013053:CDS
TTCAGTTGATTTCCAGAACA+AGG 0.543538 3.3:-83463542 MS.gene013053:intron
TTTGATCAACCCACACACCT+TGG 0.549446 3.3:+83463626 None:intergenic
GAATTTATGGGCTGAAGAAG+AGG 0.549526 3.3:-83462361 MS.gene013053:CDS
TTCTTATAGGAGGTCATGAA+GGG 0.550790 3.3:+83462171 None:intergenic
TCCAGAAGCTGTTGTTGCGT+GGG 0.552353 3.3:+83463757 None:intergenic
GTCCAGAAGCTGTTGTTGCG+TGG 0.552957 3.3:+83463756 None:intergenic
AAAGGATGGACTGTCAACTT+TGG 0.555822 3.3:-83462046 MS.gene013053:CDS
CCAAGTTACGCTCAGCCTCA+TGG 0.556554 3.3:-83463797 MS.gene013053:CDS
GGAAACAAGATGAGAGGCGA+TGG 0.556903 3.3:+83463699 None:intergenic
GGTCATGAAGGGAACTTTGA+CGG 0.559017 3.3:+83462182 None:intergenic
TCTGATGCTGCTTCTTCTGG+CGG 0.559912 3.3:-83463667 MS.gene013053:CDS
TGGGCTGAAGAAGAGGCAAA+TGG 0.561310 3.3:-83462354 MS.gene013053:CDS
AGCAGCATCAGATAGGATGA+TGG 0.563820 3.3:+83463678 None:intergenic
CTAATTAGAGAAGTTTCGAC+CGG 0.568701 3.3:-83461664 MS.gene013053:CDS
GAAGTTTGATACTTCGGTAA+CGG 0.571905 3.3:-83462238 MS.gene013053:CDS
GAGAGGCGATGGAGTTGAGA+TGG 0.573677 3.3:+83463710 None:intergenic
GAAATCAACTGAAGCCAAAG+TGG 0.575945 3.3:+83463552 None:intergenic
GGTTGATTCATCGTGAAGGA+CGG 0.577040 3.3:+83463909 None:intergenic
AGTTAAGATCATCCAACAAG+AGG 0.577438 3.3:+83461610 None:intergenic
TGAAACTACTGATACGATGA+AGG 0.578251 3.3:-83461914 MS.gene013053:CDS
GAGATGTTTGACCATGGTAA+GGG 0.580757 3.3:+83463867 None:intergenic
TCTCTAATTAGAAATAGGAA+AGG 0.584531 3.3:+83461676 None:intergenic
GATGGTCAGTGGATTTGGAT+CGG 0.592329 3.3:+83463728 None:intergenic
TTGTTGCGTGGGACCCTCAG+AGG 0.607840 3.3:+83463768 None:intergenic
TGAGCACCTGCCCAACAAAG+AGG 0.624187 3.3:+83461635 None:intergenic
AACCAAAGTTTCCCTTACCA+TGG 0.630609 3.3:-83463878 MS.gene013053:CDS
CCTCAGAGGCAGCAGCCATG+AGG 0.640062 3.3:+83463782 None:intergenic
TGGTGGTTGATTCATCGTGA+AGG 0.640526 3.3:+83463905 None:intergenic
GATGATGGAAACAAGATGAG+AGG 0.645061 3.3:+83463693 None:intergenic
TGAGAAGAGATGTTTGACCA+TGG 0.646563 3.3:+83463861 None:intergenic
ACACACCTTGGATGAAAGAG+AGG 0.656878 3.3:+83463638 None:intergenic
AGCGTAACTTGGAGTGACAG+CGG 0.664638 3.3:+83463808 None:intergenic
GCTACAAAGTCTTCTCGATG+TGG 0.664760 3.3:+83461706 None:intergenic
GGTCAGTGGATTTGGATCGG+AGG 0.671238 3.3:+83463731 None:intergenic
GATGGAGTTGAGATGGTCAG+TGG 0.682782 3.3:+83463717 None:intergenic
CCTTGGATGAAAGAGAGGCG+AGG 0.711185 3.3:+83463643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATCAAAATAAAGAAAT+TGG - chr3.3:83462512-83462531 MS.gene013053:intron 10.0%
!!! TTAATTTGATATGATTTTAA+AGG - chr3.3:83463158-83463177 MS.gene013053:intron 10.0%
!! AAAAAACTAATTATTTGTGA+AGG + chr3.3:83462205-83462224 None:intergenic 15.0%
!! GAGTAATAATTTCTTTAATA+AGG + chr3.3:83463236-83463255 None:intergenic 15.0%
!!! AAAAAACTAATAGTTTGTTA+AGG + chr3.3:83462131-83462150 None:intergenic 15.0%
!!! TTCAAATTTTATAGTACAAA+AGG - chr3.3:83462905-83462924 MS.gene013053:intron 15.0%
!!! TTTTATTTCATAACCTAATT+TGG - chr3.3:83462236-83462255 MS.gene013053:CDS 15.0%
!! AAACTTCTCTAATTAGAAAT+AGG + chr3.3:83463896-83463915 None:intergenic 20.0%
!! AATTAACATGAAATAACATG+AGG + chr3.3:83462090-83462109 None:intergenic 20.0%
!! ATCAGAATATAAAACAATCA+AGG + chr3.3:83462795-83462814 None:intergenic 20.0%
!! ATTAACATGAAATAACATGA+GGG + chr3.3:83462089-83462108 None:intergenic 20.0%
!! GATTAAAGAAGTGAATTTAT+GGG - chr3.3:83463191-83463210 MS.gene013053:intron 20.0%
!! GTGAAAATTATGTTAACAAA+AGG - chr3.3:83463072-83463091 MS.gene013053:intron 20.0%
!! TAATACAATGCTAAATTAGT+TGG + chr3.3:83463051-83463070 None:intergenic 20.0%
!! TCAGAATATAAAACAATCAA+GGG + chr3.3:83462794-83462813 None:intergenic 20.0%
!! TGATTAAAGAAGTGAATTTA+TGG - chr3.3:83463190-83463209 MS.gene013053:intron 20.0%
!! TTGTACTATAAAATTTGAAG+AGG + chr3.3:83462904-83462923 None:intergenic 20.0%
!!! AGTGATTTTTACCTTTTAAA+TGG - chr3.3:83463354-83463373 MS.gene013053:intron 20.0%
!!! CTCTAAAATTATTTTAGATG+AGG + chr3.3:83462960-83462979 None:intergenic 20.0%
! AAATAAAGAAATTGGACAGA+TGG - chr3.3:83462520-83462539 MS.gene013053:intron 25.0%
! AATAAAGAAATTGGACAGAT+GGG - chr3.3:83462521-83462540 MS.gene013053:intron 25.0%
! AATAACGTTAGATCCAAATT+AGG + chr3.3:83462252-83462271 None:intergenic 25.0%
! AGCACAAATAATATTTGTGT+TGG - chr3.3:83462282-83462301 MS.gene013053:CDS 25.0%
! ATACACACTATTCAAAATGA+TGG + chr3.3:83462573-83462592 None:intergenic 25.0%
! CAAGATTCAATATTTCGTTT+GGG - chr3.3:83463625-83463644 MS.gene013053:CDS 25.0%
! CTTATTAAAAAAGTGGAAGT+AGG - chr3.3:83463588-83463607 MS.gene013053:CDS 25.0%
! GAAAGATTTGTGAAATATGT+TGG + chr3.3:83463760-83463779 None:intergenic 25.0%
! GAAATATGTTGGAAACATAT+AGG + chr3.3:83463749-83463768 None:intergenic 25.0%
! GCTTAAACATATTTGCATAT+TGG - chr3.3:83462425-83462444 MS.gene013053:intron 25.0%
! TAATGATTATAAAGCCACTT+TGG - chr3.3:83461998-83462017 MS.gene013053:CDS 25.0%
! TACACACTATTCAAAATGAT+GGG + chr3.3:83462572-83462591 None:intergenic 25.0%
! TCTCTAATTAGAAATAGGAA+AGG + chr3.3:83463891-83463910 None:intergenic 25.0%
! TCTTCCTCTTATTAAAAAAG+TGG - chr3.3:83463581-83463600 MS.gene013053:CDS 25.0%
! TTAATATATGGAGTGGAAAT+AGG + chr3.3:83462064-83462083 None:intergenic 25.0%
! TTCATTGAAGTAAATGAAGA+AGG - chr3.3:83463777-83463796 MS.gene013053:CDS 25.0%
!! CATTTTGAATAGTGTGTATT+TGG - chr3.3:83462574-83462593 MS.gene013053:intron 25.0%
!! GTATGAATTTGCTTTATATG+CGG - chr3.3:83462599-83462618 MS.gene013053:intron 25.0%
!! TGCTTTGATCAATTTAGAAT+TGG + chr3.3:83462845-83462864 None:intergenic 25.0%
!!! ACTTCCACTTTTTTAATAAG+AGG + chr3.3:83463588-83463607 None:intergenic 25.0%
AATAAACCGTTTCTTATAGG+AGG + chr3.3:83463406-83463425 None:intergenic 30.0%
ACAAAGGTTTGTCACATATA+TGG + chr3.3:83462871-83462890 None:intergenic 30.0%
ATCTAGAAAACAGAAAGGAT+AGG + chr3.3:83463028-83463047 None:intergenic 30.0%
ATTAGCCACAATTTCTTTGA+AGG + chr3.3:83461982-83462001 None:intergenic 30.0%
CCAAACGAAATATTGAATCT+TGG + chr3.3:83463627-83463646 None:intergenic 30.0%
CCAAGATTCAATATTTCGTT+TGG - chr3.3:83463624-83463643 MS.gene013053:CDS 30.0%
CTTTGTCTTCCTTATAATCA+AGG - chr3.3:83463450-83463469 MS.gene013053:intron 30.0%
GCAAATGCAATGTACTTTAA+AGG - chr3.3:83463291-83463310 MS.gene013053:intron 30.0%
TATGAAAACATACCTTGTTC+TGG + chr3.3:83462037-83462056 None:intergenic 30.0%
TCCAATAAACCGTTTCTTAT+AGG + chr3.3:83463409-83463428 None:intergenic 30.0%
TCCTATAAGAAACGGTTTAT+TGG - chr3.3:83463405-83463424 MS.gene013053:intron 30.0%
TGCATTTGCAAATATGAGTT+TGG + chr3.3:83463280-83463299 None:intergenic 30.0%
TGGGAAAACATTATACATAC+AGG + chr3.3:83462553-83462572 None:intergenic 30.0%
TTGCAAATATGAGTTTGGTT+AGG + chr3.3:83463275-83463294 None:intergenic 30.0%
TTTGAATAGTGTGTATTTGG+AGG - chr3.3:83462577-83462596 MS.gene013053:intron 30.0%
! ACATGAGACCTTAATGTTTT+AGG - chr3.3:83462335-83462354 MS.gene013053:CDS 30.0%
! CAATGTACTTTAAAGGAACA+TGG - chr3.3:83463298-83463317 MS.gene013053:intron 30.0%
! TATTTTTCTTCCAGATGCAA+AGG - chr3.3:83463500-83463519 MS.gene013053:intron 30.0%
!! AACATGAGGGCATTAATATA+TGG + chr3.3:83462076-83462095 None:intergenic 30.0%
!! TCTTTGTTGGAGTTTGTTTT+CGG + chr3.3:83462630-83462649 None:intergenic 30.0%
!! TTCTGGAGGTTTTACAAAAA+TGG - chr3.3:83463698-83463717 MS.gene013053:CDS 30.0%
!!! GGGGTGATATTTATTTTGAT+GGG + chr3.3:83462686-83462705 None:intergenic 30.0%
ACCTTCCTTCAAAGAAATTG+TGG - chr3.3:83461974-83461993 MS.gene013053:CDS 35.0%
ATGCAAATATGTTTAAGCGC+TGG + chr3.3:83462423-83462442 None:intergenic 35.0%
CACTTCTTTAATCACTTCAC+TGG + chr3.3:83463184-83463203 None:intergenic 35.0%
CCAACCAACCTAAAACATTA+AGG + chr3.3:83462346-83462365 None:intergenic 35.0%
CTAATTAGAGAAGTTTCGAC+CGG - chr3.3:83463900-83463919 MS.gene013053:CDS 35.0%
GAAGTTTGATACTTCGGTAA+CGG - chr3.3:83463326-83463345 MS.gene013053:intron 35.0%
GACTGAGAAGTTTGATACTT+CGG - chr3.3:83463320-83463339 MS.gene013053:intron 35.0%
GGTAATTACCAAAGTCATGA+AGG + chr3.3:83462824-83462843 None:intergenic 35.0%
GTTGGATCTAGAAAACAGAA+AGG + chr3.3:83463033-83463052 None:intergenic 35.0%
TCATCTTCGCCTTGATTATA+AGG + chr3.3:83463462-83463481 None:intergenic 35.0%
TCATGACCTCCTATAAGAAA+CGG - chr3.3:83463397-83463416 MS.gene013053:intron 35.0%
TGAAACTACTGATACGATGA+AGG - chr3.3:83463650-83463669 MS.gene013053:CDS 35.0%
TTCAGTGGTCAAGTAAGTAT+AGG + chr3.3:83462724-83462743 None:intergenic 35.0%
TTCTTATAGGAGGTCATGAA+GGG + chr3.3:83463396-83463415 None:intergenic 35.0%
TTTCTTATAGGAGGTCATGA+AGG + chr3.3:83463397-83463416 None:intergenic 35.0%
! ATTTTACCTTTCTCTTCTGG+AGG - chr3.3:83463684-83463703 MS.gene013053:CDS 35.0%
! CGGTTTATTGGAGATTTTGA+TGG - chr3.3:83463417-83463436 MS.gene013053:intron 35.0%
! GTGATTTTACCTTTCTCTTC+TGG - chr3.3:83463681-83463700 MS.gene013053:CDS 35.0%
! GTTAGGTTGTTGACTGAATT+TGG + chr3.3:83463258-83463277 None:intergenic 35.0%
! TCCGTTTGTTGATTGATTCA+CGG + chr3.3:83461629-83461648 None:intergenic 35.0%
! TGGAGGTTTTACAAAAATGG+TGG - chr3.3:83463701-83463720 MS.gene013053:CDS 35.0%
! TTCAGTTGATTTCCAGAACA+AGG - chr3.3:83462022-83462041 MS.gene013053:CDS 35.0%
!! AAGAGGCGTTTCAATAACAA+AGG + chr3.3:83462887-83462906 None:intergenic 35.0%
!! CTTTGTTGGAGTTTGTTTTC+GGG + chr3.3:83462629-83462648 None:intergenic 35.0%
!! GAGACCTTAATGTTTTAGGT+TGG - chr3.3:83462339-83462358 MS.gene013053:CDS 35.0%
!!! AACAATCAAGGGTGTTCTTT+TGG + chr3.3:83462783-83462802 None:intergenic 35.0%
!!! AATGGTGGATTCTTCTTTTG+TGG - chr3.3:83463716-83463735 MS.gene013053:CDS 35.0%
!!! ACAATCAAGGGTGTTCTTTT+GGG + chr3.3:83462782-83462801 None:intergenic 35.0%
!!! ATGGTGGATTCTTCTTTTGT+GGG - chr3.3:83463717-83463736 MS.gene013053:CDS 35.0%
!!! CCTTAATGTTTTAGGTTGGT+TGG - chr3.3:83462343-83462362 MS.gene013053:CDS 35.0%
!!! GGGGGTGATATTTATTTTGA+TGG + chr3.3:83462687-83462706 None:intergenic 35.0%
!!! TATAGGAGTTGGTGGTTTTA+GGG + chr3.3:83462707-83462726 None:intergenic 35.0%
!!! TTATGGATGTCGTTTTTCAG+TGG + chr3.3:83462739-83462758 None:intergenic 35.0%
AAAGAAATTGGACAGATGGG+TGG - chr3.3:83462524-83462543 MS.gene013053:intron 40.0%
AACCAAAGTTTCCCTTACCA+TGG - chr3.3:83461686-83461705 MS.gene013053:CDS 40.0%
ACTGATACGATGAAGGAGTT+AGG - chr3.3:83463657-83463676 MS.gene013053:CDS 40.0%
AGAGATGTTTGACCATGGTA+AGG + chr3.3:83461701-83461720 None:intergenic 40.0%
ATAGCACACCTTCATGACTT+TGG - chr3.3:83462813-83462832 MS.gene013053:intron 40.0%
CAAGTAAGTATAGGAGTTGG+TGG + chr3.3:83462715-83462734 None:intergenic 40.0%
CCCGTGAATCAATCAACAAA+CGG - chr3.3:83461625-83461644 MS.gene013053:CDS 40.0%
GAAATCAACTGAAGCCAAAG+TGG + chr3.3:83462015-83462034 None:intergenic 40.0%
GAAGGAAGGTTGAAGAGAAA+TGG + chr3.3:83461964-83461983 None:intergenic 40.0%
GAGATGTTTGACCATGGTAA+GGG + chr3.3:83461700-83461719 None:intergenic 40.0%
GGTCAAGTAAGTATAGGAGT+TGG + chr3.3:83462718-83462737 None:intergenic 40.0%
GTAAAACCTCCAGAAGAGAA+AGG + chr3.3:83463693-83463712 None:intergenic 40.0%
GTGTGTGTGTGTATATAGCA+TGG - chr3.3:83462375-83462394 MS.gene013053:CDS 40.0%
TGACGGAGCTACCATTTAAA+AGG + chr3.3:83463368-83463387 None:intergenic 40.0%
TGAGAAGAGATGTTTGACCA+TGG + chr3.3:83461706-83461725 None:intergenic 40.0%
TGGTAAGGGAAACTTTGGTT+TGG + chr3.3:83461686-83461705 None:intergenic 40.0%
TTTCTTCCAGATGCAAAGGA+TGG - chr3.3:83463504-83463523 MS.gene013053:intron 40.0%
! CCGTTTGTTGATTGATTCAC+GGG + chr3.3:83461628-83461647 None:intergenic 40.0%
! GAATTTATGGGCTGAAGAAG+AGG - chr3.3:83463203-83463222 MS.gene013053:intron 40.0%
! GCCACAATTTCTTTGAAGGA+AGG + chr3.3:83461978-83461997 None:intergenic 40.0%
! GGTAGAACTTGCTCTAAATC+AGG + chr3.3:83462184-83462203 None:intergenic 40.0%
! TGATGGGTGTTGTCCTTTAT+GGG + chr3.3:83462670-83462689 None:intergenic 40.0%
! TTGATGGGTGTTGTCCTTTA+TGG + chr3.3:83462671-83462690 None:intergenic 40.0%
!! AAAGGATGGACTGTCAACTT+TGG - chr3.3:83463518-83463537 MS.gene013053:intron 40.0%
!! AAGGGAAACTTTGGTTTGGT+TGG + chr3.3:83461682-83461701 None:intergenic 40.0%
!! GAGGGCATTAATATATGGAG+TGG + chr3.3:83462071-83462090 None:intergenic 40.0%
!! GATGATGGAAACAAGATGAG+AGG + chr3.3:83461874-83461893 None:intergenic 40.0%
!!! ATAGGAGTTGGTGGTTTTAG+GGG + chr3.3:83462706-83462725 None:intergenic 40.0%
!!! CAATCAAGGGTGTTCTTTTG+GGG + chr3.3:83462781-83462800 None:intergenic 40.0%
!!! GTATAGGAGTTGGTGGTTTT+AGG + chr3.3:83462708-83462727 None:intergenic 40.0%
AACAATCCTCTTTGTTGGGC+AGG - chr3.3:83463923-83463942 MS.gene013053:CDS 45.0%
ACACACCTTGGATGAAAGAG+AGG + chr3.3:83461929-83461948 None:intergenic 45.0%
ACCGGAACAATCCTCTTTGT+TGG - chr3.3:83463918-83463937 MS.gene013053:CDS 45.0%
AGCAGCATCAGATAGGATGA+TGG + chr3.3:83461889-83461908 None:intergenic 45.0%
AGTAGTGGCGACGATTGTTA+TGG + chr3.3:83462756-83462775 None:intergenic 45.0%
CAGAAGAAGCAGCATCAGAT+AGG + chr3.3:83461896-83461915 None:intergenic 45.0%
CCCAACAAAGAGGATTGTTC+CGG + chr3.3:83463922-83463941 None:intergenic 45.0%
CCGGAACAATCCTCTTTGTT+GGG - chr3.3:83463919-83463938 MS.gene013053:CDS 45.0%
CCTACGATCAACACCCATAA+AGG - chr3.3:83462654-83462673 MS.gene013053:intron 45.0%
CTCTTTCATCCAAGGTGTGT+GGG - chr3.3:83461929-83461948 MS.gene013053:CDS 45.0%
GACCATGGTAAGGGAAACTT+TGG + chr3.3:83461691-83461710 None:intergenic 45.0%
GATCGTAGGTGTGTCTTTGT+TGG + chr3.3:83462643-83462662 None:intergenic 45.0%
GCTACAAAGTCTTCTCGATG+TGG + chr3.3:83463861-83463880 None:intergenic 45.0%
GGTCATGAAGGGAACTTTGA+CGG + chr3.3:83463385-83463404 None:intergenic 45.0%
GTCAACTTTGGTTGAGAAGC+TGG - chr3.3:83463530-83463549 MS.gene013053:intron 45.0%
TCTCTTTCATCCAAGGTGTG+TGG - chr3.3:83461928-83461947 MS.gene013053:CDS 45.0%
TTTGATCAACCCACACACCT+TGG + chr3.3:83461941-83461960 None:intergenic 45.0%
! CTATCTGATGCTGCTTCTTC+TGG - chr3.3:83461894-83461913 MS.gene013053:CDS 45.0%
! GATGGTCAGTGGATTTGGAT+CGG + chr3.3:83461839-83461858 None:intergenic 45.0%
! GGTTGATTCATCGTGAAGGA+CGG + chr3.3:83461658-83461677 None:intergenic 45.0%
! GTTGAGATGGTCAGTGGATT+TGG + chr3.3:83461844-83461863 None:intergenic 45.0%
! TGGTGGTTGATTCATCGTGA+AGG + chr3.3:83461662-83461681 None:intergenic 45.0%
!! CCTTTATGGGTGTTGATCGT+AGG + chr3.3:83462657-83462676 None:intergenic 45.0%
!! GGAAACTTTGGTTTGGTTGG+TGG + chr3.3:83461679-83461698 None:intergenic 45.0%
!!! TAGGAGTTGGTGGTTTTAGG+GGG + chr3.3:83462705-83462724 None:intergenic 45.0%
!!! TGTTCTTTTGGGGTGAGTAG+TGG + chr3.3:83462771-83462790 None:intergenic 45.0%
!! AAATTATACTTATAAAAATT+TGG + chr3.3:83462494-83462513 None:intergenic 5.0%
AGCGTAACTTGGAGTGACAG+CGG + chr3.3:83461759-83461778 None:intergenic 50.0%
CAGGTGCTCAATCCTCTTGT+TGG - chr3.3:83463942-83463961 MS.gene013053:CDS 50.0%
GACAGTCCATCCTTTGCATC+TGG + chr3.3:83463513-83463532 None:intergenic 50.0%
GAGGCGTATGCTAAAGTAGC+AGG + chr3.3:83462941-83462960 None:intergenic 50.0%
GATGGAGTTGAGATGGTCAG+TGG + chr3.3:83461850-83461869 None:intergenic 50.0%
GGAAACAAGATGAGAGGCGA+TGG + chr3.3:83461868-83461887 None:intergenic 50.0%
TCCAGAAGCTGTTGTTGCGT+GGG + chr3.3:83461810-83461829 None:intergenic 50.0%
TGGGCTGAAGAAGAGGCAAA+TGG - chr3.3:83463210-83463229 MS.gene013053:intron 50.0%
! TCTGATGCTGCTTCTTCTGG+CGG - chr3.3:83461897-83461916 MS.gene013053:CDS 50.0%
CCAAGTTACGCTCAGCCTCA+TGG - chr3.3:83461767-83461786 MS.gene013053:CDS 55.0%
CCATGAGGCTGAGCGTAACT+TGG + chr3.3:83461770-83461789 None:intergenic 55.0%
CCTCGCCTCTCTTTCATCCA+AGG - chr3.3:83461921-83461940 MS.gene013053:CDS 55.0%
CCTTGGATGAAAGAGAGGCG+AGG + chr3.3:83461924-83461943 None:intergenic 55.0%
GAGAGGCGATGGAGTTGAGA+TGG + chr3.3:83461857-83461876 None:intergenic 55.0%
GTCCAGAAGCTGTTGTTGCG+TGG + chr3.3:83461811-83461830 None:intergenic 55.0%
TCCCACGCAACAACAGCTTC+TGG - chr3.3:83461806-83461825 MS.gene013053:CDS 55.0%
TGAGCACCTGCCCAACAAAG+AGG + chr3.3:83463932-83463951 None:intergenic 55.0%
! CTGATGCTGCTTCTTCTGGC+GGG - chr3.3:83461898-83461917 MS.gene013053:CDS 55.0%
! GGTCAGTGGATTTGGATCGG+AGG + chr3.3:83461836-83461855 None:intergenic 55.0%
CTCATGGCTGCTGCCTCTGA+GGG - chr3.3:83461783-83461802 MS.gene013053:CDS 60.0%
TTGTTGCGTGGGACCCTCAG+AGG + chr3.3:83461799-83461818 None:intergenic 60.0%
CCTCAGAGGCAGCAGCCATG+AGG + chr3.3:83461785-83461804 None:intergenic 65.0%
CCTCATGGCTGCTGCCTCTG+AGG - chr3.3:83461782-83461801 MS.gene013053:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 83461618 83463968 83461618 ID=MS.gene013053
chr3.3 mRNA 83461618 83463968 83461618 ID=MS.gene013053.t1;Parent=MS.gene013053
chr3.3 exon 83463543 83463968 83463543 ID=MS.gene013053.t1.exon1;Parent=MS.gene013053.t1
chr3.3 CDS 83463543 83463968 83463543 ID=cds.MS.gene013053.t1;Parent=MS.gene013053.t1
chr3.3 exon 83461618 83462406 83461618 ID=MS.gene013053.t1.exon2;Parent=MS.gene013053.t1
chr3.3 CDS 83461618 83462406 83461618 ID=cds.MS.gene013053.t1;Parent=MS.gene013053.t1
Gene Sequence

>MS.gene013053

ATGGCTACCCGTGAATCAATCAACAAACGGAAAAGAACCGTCCTTCACGATGAATCAACCACCAACCAAACCAAAGTTTCCCTTACCATGGTCAAACATCTCTTCTCAAAAGAATCAGACAAGAACGTTGTATTTTCACCGCTGTCACTCCAAGTTACGCTCAGCCTCATGGCTGCTGCCTCTGAGGGTCCCACGCAACAACAGCTTCTGGACTTCCTCCGATCCAAATCCACTGACCATCTCAACTCCATCGCCTCTCATCTTGTTTCCATCATCCTATCTGATGCTGCTTCTTCTGGCGGGCCTCGCCTCTCTTTCATCCAAGGTGTGTGGGTTGATCAAACCATTTCTCTTCAACCTTCCTTCAAAGAAATTGTGGCTAATGATTATAAAGCCACTTTGGCTTCAGTTGATTTCCAGAACAAGGTATGTTTTCATATCTTCCTATTTCCACTCCATATATTAATGCCCTCATGTTATTTCATGTTAATTAATTAATTAAAAGTTCTACCTTAACAAACTATTAGTTTTTTTTTTTTATATATTATTATTTTATTTCATAACCTGATTTAGAGCAAGTTCTACCTTCACAAATAATTAGTTTTTTTATTATTATTATTTTATTTCATAACCTAATTTGGATCTAACGTTATTCTACATATGAAGCACAAATAATATTTGTGTTGGTTAATCTTAGATGAAGTGTGTGATTCATGAACATGAGACCTTAATGTTTTAGGTTGGTTGGTGTGTGCGTGTGTGTGTGTGTATATAGCATGGTTTAAGAGTGACTTTTTCAATTCCAGCGCTTAAACATATTTGCATATTGGTGTATTAAAAAAGATAAATTTAGTTTGTTACGATATGAAAGTGCCAAATTTTTATAAGTATAATTTTAATCAAAATAAAGAAATTGGACAGATGGGTGGACACCTGTATGTATAATGTTTTCCCATCATTTTGAATAGTGTGTATTTGGAGGTATGAATTTGCTTTATATGCGGAACACCCGAAAACAAACTCCAACAAAGACACACCTACGATCAACACCCATAAAGGACAACACCCATCAAAATAAATATCACCCCCTAAAACCACCAACTCCTATACTTACTTGACCACTGAAAAACGACATCCATAACAATCGTCGCCACTACTCACCCCAAAAGAACACCCTTGATTGTTTTATATTCTGATAGCACACCTTCATGACTTTGGTAATTACCAATTCTAAATTGATCAAAGCAATTCCATATATGTGACAAACCTTTGTTATTGAAACGCCTCTTCAAATTTTATAGTACAAAAGGCATAAACTTTCCTGCTACTTTAGCATACGCCTCATCTAAAATAATTTTAGAGCAACAAGCATTAACTTCTATGAAAACAATTGAGAAATACAACTTTCCTATCCTTTCTGTTTTCTAGATCCAACTAATTTAGCATTGTATTATGTGAAAATTATGTTAACAAAAGGTTAATTTTTTCTATTGAAATACTTGTGAAAATAATTCAACTTATCTATTTACATAACTGATTTTTAATTTGATATGATTTTAAAGGCCAGTGAAGTGATTAAAGAAGTGAATTTATGGGCTGAAGAAGAGGCAAATGGCCTTATTAAAGAAATTATTACTCCAAATTCAGTCAACAACCTAACCAAACTCATATTTGCAAATGCAATGTACTTTAAAGGAACATGGACTGAGAAGTTTGATACTTCGGTAACGGAAGACAGTGATTTTTACCTTTTAAATGGTAGCTCCGTCAAAGTTCCCTTCATGACCTCCTATAAGAAACGGTTTATTGGAGATTTTGATGGTTTTAAAGTTCTTTGTCTTCCTTATAATCAAGGCGAAGATGAGCGTCAATTCTCTATGTATATTTTTCTTCCAGATGCAAAGGATGGACTGTCAACTTTGGTTGAGAAGCTGGCTTCTGAATTTGAGTTACTAGAACACAATCTTCCTCTTATTAAAAAAGTGGAAGTAGGTGAGTTCAAGATTCCAAGATTCAATATTTCGTTTGGGATTGAAACTACTGATACGATGAAGGAGTTAGGAGTGATTTTACCTTTCTCTTCTGGAGGTTTTACAAAAATGGTGGATTCTTCTTTTGTGGGTAAAAACCTATATGTTTCCAACATATTTCACAAATCTTTCATTGAAGTAAATGAAGAAGGCACTGAAGCTGCTGCATTCACTACTTATACAAATCGCAAATCACACAGAAAGTCATGTCCACATCGAGAAGACTTTGTAGCTGATCATCCTTTCCTATTTCTAATTAGAGAAGTTTCGACCGGAACAATCCTCTTTGTTGGGCAGGTGCTCAATCCTCTTGTTGGATGA

Protein sequence

>MS.gene013053.t1

MATRESINKRKRTVLHDESTTNQTKVSLTMVKHLFSKESDKNVVFSPLSLQVTLSLMAAASEGPTQQQLLDFLRSKSTDHLNSIASHLVSIILSDAASSGGPRLSFIQGVWVDQTISLQPSFKEIVANDYKATLASVDFQNKASEVIKEVNLWAEEEANGLIKEIITPNSVNNLTKLIFANAMYFKGTWTEKFDTSVTEDSDFYLLNGSSVKVPFMTSYKKRFIGDFDGFKVLCLPYNQGEDERQFSMYIFLPDAKDGLSTLVEKLASEFELLEHNLPLIKKVEVGEFKIPRFNISFGIETTDTMKELGVILPFSSGGFTKMVDSSFVGKNLYVSNIFHKSFIEVNEEGTEAAAFTTYTNRKSHRKSCPHREDFVADHPFLFLIREVSTGTILFVGQVLNPLVG