Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013426.t1 | XP_013461517.1 | 97.6 | 591 | 14 | 0 | 1 | 591 | 1 | 591 | 0.00E+00 | 1146.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013426.t1 | Q501D5 | 58.0 | 598 | 236 | 9 | 1 | 592 | 1 | 589 | 5.3e-187 | 655.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013426.t1 | A0A072V141 | 97.6 | 591 | 14 | 0 | 1 | 591 | 1 | 591 | 0.0e+00 | 1146.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013426 | MS.gene57751 | PPI |
| MS.gene041425 | MS.gene013426 | PPI |
| MS.gene013426 | MS.gene58754 | PPI |
| MS.gene58234 | MS.gene013426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013426.t1 | MTR_3g094070 | 97.631 | 591 | 14 | 0 | 1 | 591 | 1 | 591 | 0.0 | 1196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013426.t1 | AT2G40550 | 58.027 | 598 | 236 | 9 | 1 | 592 | 1 | 589 | 0.0 | 688 |
Find 156 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTGCTGATACGCCTATT+TGG | 0.255149 | 3.4:-85715677 | MS.gene013426:CDS |
| TCGGTTTCGTGGAATGATTC+AGG | 0.295728 | 3.4:-85715893 | MS.gene013426:CDS |
| AGACATCTCTCAGCTGTTCT+AGG | 0.298551 | 3.4:-85713708 | MS.gene013426:CDS |
| CCTTTGACGAAGTCAGGTTT+TGG | 0.304581 | 3.4:+85713750 | None:intergenic |
| CTCTGCTGATACGCCTATTT+GGG | 0.305209 | 3.4:-85715676 | MS.gene013426:CDS |
| TTCCCCTGCCTCTCAGTCTC+AGG | 0.325781 | 3.4:-85714500 | MS.gene013426:CDS |
| CTTCTTTAAACAACCGCGAC+TGG | 0.333640 | 3.4:-85716128 | MS.gene013426:CDS |
| CGCCTCATGTGTTTAAGCTT+TGG | 0.337640 | 3.4:-85712033 | MS.gene013426:CDS |
| CTGATGCCTTTGACGAAGTC+AGG | 0.342007 | 3.4:+85713744 | None:intergenic |
| AGTGATTTATCAAATGGATT+TGG | 0.344039 | 3.4:-85714168 | MS.gene013426:CDS |
| TACATCTGATCCAGAGCTTC+AGG | 0.346600 | 3.4:-85714205 | MS.gene013426:CDS |
| AAAAGAATTATGATACAAAT+AGG | 0.355812 | 3.4:-85713282 | MS.gene013426:intron |
| TCACCAACCTGCTTAAATCT+TGG | 0.359173 | 3.4:+85712153 | None:intergenic |
| GTTGTTTATGCATAGGTTCC+GGG | 0.372858 | 3.4:-85715444 | MS.gene013426:intron |
| GAGATTGCTTTACTGTGTTC+CGG | 0.373047 | 3.4:-85715649 | MS.gene013426:intron |
| CGAAACCGAACAAGAGTATT+GGG | 0.374415 | 3.4:+85715907 | None:intergenic |
| GTGGAGGACCAATAAATTTA+CGG | 0.375012 | 3.4:-85715730 | MS.gene013426:CDS |
| TTGGCAAATGACCAAGGAAT+TGG | 0.375411 | 3.4:-85711986 | MS.gene013426:CDS |
| GAAGATAGTGATTTATCAAA+TGG | 0.389010 | 3.4:-85714174 | MS.gene013426:CDS |
| AATACTCTTGTTCGGTTTCG+TGG | 0.391919 | 3.4:-85715904 | MS.gene013426:CDS |
| AGCAGTTGGCAATCCATCTA+TGG | 0.394157 | 3.4:-85715391 | MS.gene013426:CDS |
| AAGCAGAAGCTTTGGAAGCT+TGG | 0.402078 | 3.4:-85712699 | MS.gene013426:CDS |
| AGCTGTGGAAGCAGAAGCTT+TGG | 0.407257 | 3.4:-85712707 | MS.gene013426:CDS |
| AGCAATCTCCGTTCCCAAAT+AGG | 0.409820 | 3.4:+85715663 | None:intergenic |
| GCCTTCTGCAACCATTTGCT+TGG | 0.413431 | 3.4:-85712731 | MS.gene013426:CDS |
| TGAGTGGGTACCTCTATCAT+AGG | 0.419368 | 3.4:+85713886 | None:intergenic |
| TCACAGGAAACTTTCAGTTC+AGG | 0.423033 | 3.4:-85713926 | MS.gene013426:CDS |
| GGGATCGGAACCGGTGGCTA+TGG | 0.427343 | 3.4:+85716152 | None:intergenic |
| TTCTTTAAACAACCGCGACT+GGG | 0.428429 | 3.4:-85716127 | MS.gene013426:CDS |
| CACCAACCTGCTTAAATCTT+GGG | 0.428915 | 3.4:+85712154 | None:intergenic |
| TTTGCCAATGTTCTAGTGAC+AGG | 0.430670 | 3.4:+85712001 | None:intergenic |
| CTGACTTCGTCAAAGGCATC+AGG | 0.431219 | 3.4:-85713743 | MS.gene013426:CDS |
| TTGCCAACTGCTTCTGCTGA+AGG | 0.443463 | 3.4:+85715402 | None:intergenic |
| TGAAACCCAATACTCTTGTT+CGG | 0.443856 | 3.4:-85715912 | MS.gene013426:CDS |
| TTCCACAGCTTCCAAGCAAA+TGG | 0.452550 | 3.4:+85712720 | None:intergenic |
| AGCAAAGAAACCGCGTCTAT+CGG | 0.458757 | 3.4:-85713400 | MS.gene013426:CDS |
| CAATGCTCCAGATTAGAAAC+TGG | 0.460957 | 3.4:-85713177 | MS.gene013426:intron |
| CAAGTACTACAAGATGGAAA+TGG | 0.463233 | 3.4:-85712830 | MS.gene013426:CDS |
| ATGAATCATACCTTGTCAGC+TGG | 0.467749 | 3.4:+85714123 | None:intergenic |
| TGTTCAAGTATTCCACTGTA+AGG | 0.468020 | 3.4:+85713323 | None:intergenic |
| TCGTTGTCCTCCTGAAGCTC+TGG | 0.471222 | 3.4:+85714195 | None:intergenic |
| TTCAGCTTCAGTTCAGACTC+TGG | 0.472343 | 3.4:+85714255 | None:intergenic |
| CTCATCTAGTTGTATTGTAA+AGG | 0.476614 | 3.4:-85714419 | MS.gene013426:intron |
| CTGATGTAATTGTACCTATC+CGG | 0.478429 | 3.4:-85712753 | MS.gene013426:CDS |
| GATGTGATTGGTCGGAGAGA+AGG | 0.479336 | 3.4:+85716082 | None:intergenic |
| TAAAGAAGTGGGATCGGAAC+CGG | 0.480096 | 3.4:+85716143 | None:intergenic |
| GCGGAGTCTCTCCAATTCCT+TGG | 0.483490 | 3.4:+85711975 | None:intergenic |
| GCTCCCTGAGACTGAGAGGC+AGG | 0.483876 | 3.4:+85714496 | None:intergenic |
| TGAATACCCAAGATTTAAGC+AGG | 0.484782 | 3.4:-85712160 | MS.gene013426:intron |
| GGGTTTCACGTATCTGATAG+TGG | 0.486104 | 3.4:+85715927 | None:intergenic |
| TCTAGTATGAGTTTATTGTC+TGG | 0.486602 | 3.4:-85714454 | MS.gene013426:CDS |
| GGCTATGGCGGCGTCGAAGG+TGG | 0.487183 | 3.4:+85716167 | None:intergenic |
| ATACTAGAGCCAGCGATCTC+AGG | 0.490063 | 3.4:+85714469 | None:intergenic |
| ACGAAACCGAACAAGAGTAT+TGG | 0.490164 | 3.4:+85715906 | None:intergenic |
| CGACCAATCACATCTCTCTC+AGG | 0.491453 | 3.4:-85716073 | MS.gene013426:intron |
| AAATGTAATGGAGTTGCAAA+AGG | 0.494363 | 3.4:-85713052 | MS.gene013426:intron |
| TCAGATGTCCAATCCATAGA+TGG | 0.495292 | 3.4:+85715378 | None:intergenic |
| CTGAACAGATTGGTAACAAT+GGG | 0.496519 | 3.4:-85712057 | MS.gene013426:intron |
| AGCAAATGGTTGCAGAAGGC+CGG | 0.497324 | 3.4:+85712734 | None:intergenic |
| GTCGCGGTTGTTTAAAGAAG+TGG | 0.500107 | 3.4:+85716131 | None:intergenic |
| CAGAAGCTTTGGAAGCTTGG+AGG | 0.501052 | 3.4:-85712696 | MS.gene013426:CDS |
| GGTGGCTATGGCGGCGTCGA+AGG | 0.503625 | 3.4:+85716164 | None:intergenic |
| TTCTCCTAATACTAAAAGAA+TGG | 0.508460 | 3.4:-85715091 | MS.gene013426:intron |
| TCCCCTGCCTCTCAGTCTCA+GGG | 0.509872 | 3.4:-85714499 | MS.gene013426:CDS |
| TTGGCAATCCATCTATGGAT+TGG | 0.510275 | 3.4:-85715386 | MS.gene013426:CDS |
| ATAGGTACAATTACATCAGC+TGG | 0.512462 | 3.4:+85712757 | None:intergenic |
| TCAGAATAAGCCTATGATAG+AGG | 0.514223 | 3.4:-85713896 | MS.gene013426:intron |
| TTCACGTATCTGATAGTGGC+TGG | 0.515371 | 3.4:+85715931 | None:intergenic |
| CAAAGAGAAAAGAGGAGGAG+AGG | 0.518617 | 3.4:-85715354 | MS.gene013426:CDS |
| TGAATCATACCTTGTCAGCT+GGG | 0.518687 | 3.4:+85714124 | None:intergenic |
| TCCTGTGAATAAAACAATGA+AGG | 0.523148 | 3.4:+85713941 | None:intergenic |
| GAAGCTCTGGATCAGATGTA+AGG | 0.525588 | 3.4:+85714208 | None:intergenic |
| GTTCAAGTATTCCACTGTAA+GGG | 0.527633 | 3.4:+85713324 | None:intergenic |
| AGGGTAGATGCTCTTGCTGT+GGG | 0.529218 | 3.4:-85713451 | MS.gene013426:CDS |
| GTATCAGCAGAGCAACCGAC+AGG | 0.531241 | 3.4:+85715687 | None:intergenic |
| TTGCCGCAATACAAGCAGAT+AGG | 0.532247 | 3.4:-85712187 | MS.gene013426:CDS |
| ATCGGAACCGGTGGCTATGG+CGG | 0.532256 | 3.4:+85716155 | None:intergenic |
| ATGTATATGGAAGGATGGTT+CGG | 0.533754 | 3.4:-85715754 | MS.gene013426:intron |
| AACCATTTGCTTGGAAGCTG+TGG | 0.536958 | 3.4:-85712722 | MS.gene013426:CDS |
| GATGAGACACAATTAAAAGC+TGG | 0.537791 | 3.4:-85713117 | MS.gene013426:CDS |
| AGGTTCCGGGACTGAATTCG+TGG | 0.538507 | 3.4:-85715431 | MS.gene013426:CDS |
| AACTCACGATTCACGATGGT+GGG | 0.539632 | 3.4:-85716234 | None:intergenic |
| TCCCTGAGACTGAGAGGCAG+GGG | 0.541900 | 3.4:+85714498 | None:intergenic |
| CCACCCTGTCACTAGAACAT+TGG | 0.543609 | 3.4:-85712005 | MS.gene013426:CDS |
| TTTATTTATTCACAGGTTGA+GGG | 0.544096 | 3.4:-85715129 | MS.gene013426:intron |
| AGCTGGAACTCTCAATTCTG+TGG | 0.552721 | 3.4:-85713100 | MS.gene013426:CDS |
| CTCCCTGAGACTGAGAGGCA+GGG | 0.556116 | 3.4:+85714497 | None:intergenic |
| ATGGTTGCAGAAGGCCGGAT+AGG | 0.556436 | 3.4:+85712739 | None:intergenic |
| CCAAAACCTGACTTCGTCAA+AGG | 0.559381 | 3.4:-85713750 | MS.gene013426:CDS |
| AAGCTTTGGAAGCTTGGAGG+TGG | 0.559758 | 3.4:-85712693 | MS.gene013426:CDS |
| CTATCATAGGCTTATTCTGA+AGG | 0.563882 | 3.4:+85713899 | None:intergenic |
| TTACCTGAGAGAGATGTGAT+TGG | 0.564128 | 3.4:+85716070 | None:intergenic |
| GGAAGGATGGTTCGGTGTGG+AGG | 0.566388 | 3.4:-85715746 | MS.gene013426:intron |
| TCTCAACATTCCATCCCTGT+CGG | 0.566421 | 3.4:-85715702 | MS.gene013426:CDS |
| TCTGCCCACGAATTCAGTCC+CGG | 0.568498 | 3.4:+85715426 | None:intergenic |
| CAGGGTAGATGCTCTTGCTG+TGG | 0.570066 | 3.4:-85713452 | MS.gene013426:CDS |
| GCTGGAACTCTCAATTCTGT+GGG | 0.571225 | 3.4:-85713099 | MS.gene013426:CDS |
| TGGCGAGGAGATCGTACTGT+GGG | 0.571872 | 3.4:+85716211 | None:intergenic |
| GCACAAGGTTCTTGACAGCA+TGG | 0.575018 | 3.4:+85713365 | None:intergenic |
| TCTGAACAGATTGGTAACAA+TGG | 0.575926 | 3.4:-85712058 | MS.gene013426:intron |
| CCGCACCGAGTGGGTTGGCG+AGG | 0.576164 | 3.4:+85716196 | None:intergenic |
| TCGCGGTTGTTTAAAGAAGT+GGG | 0.576680 | 3.4:+85716132 | None:intergenic |
| GAACCTTCAGCAGAAGCAGT+TGG | 0.578192 | 3.4:-85715405 | MS.gene013426:CDS |
| TGGAGAGACTCCGCAGAGAG+AGG | 0.581928 | 3.4:-85711966 | MS.gene013426:CDS |
| TACAGCTCCCTGAGACTGAG+AGG | 0.582470 | 3.4:+85714492 | None:intergenic |
| TTCACAGGTTGAGGGTGATG+AGG | 0.583221 | 3.4:-85715121 | MS.gene013426:intron |
| GATCTCCTCGCCAACCCACT+CGG | 0.583364 | 3.4:-85716201 | MS.gene013426:CDS |
| AAGAACAGCATACCTTGGAT+AGG | 0.585323 | 3.4:+85713646 | None:intergenic |
| GTCAGCTGGGAAATGATGCA+AGG | 0.588207 | 3.4:+85714137 | None:intergenic |
| TGATTTCAAGTACTACAAGA+TGG | 0.589781 | 3.4:-85712836 | MS.gene013426:CDS |
| TTCAAGTATTCCACTGTAAG+GGG | 0.590418 | 3.4:+85713325 | None:intergenic |
| TTCGACGCCGCCATAGCCAC+CGG | 0.590506 | 3.4:-85716162 | MS.gene013426:CDS |
| AGCAGAGCAACCGACAGGGA+TGG | 0.590945 | 3.4:+85715692 | None:intergenic |
| GGAATGATTCAGGATATGCT+TGG | 0.591067 | 3.4:-85715883 | MS.gene013426:CDS |
| CTGATACGCCTATTTGGGAA+CGG | 0.595457 | 3.4:-85715671 | MS.gene013426:CDS |
| ACTCCTATCTGCTTGTATTG+CGG | 0.595846 | 3.4:+85712184 | None:intergenic |
| CCTCAGACAAAACTAACAGT+TGG | 0.597317 | 3.4:+85712797 | None:intergenic |
| GTTGTTTAAAGAAGTGGGAT+CGG | 0.598531 | 3.4:+85716137 | None:intergenic |
| CTGAGAGAGATGTGATTGGT+CGG | 0.599783 | 3.4:+85716074 | None:intergenic |
| GATCGATGACGCCCCAGTCG+CGG | 0.601677 | 3.4:+85716115 | None:intergenic |
| TCCAAGCAAATGGTTGCAGA+AGG | 0.602079 | 3.4:+85712730 | None:intergenic |
| TCTGACCGCACCGAGTGGGT+TGG | 0.603273 | 3.4:+85716191 | None:intergenic |
| TCTTTAAACAACCGCGACTG+GGG | 0.604525 | 3.4:-85716126 | MS.gene013426:CDS |
| GCATCATTTCCCAGCTGACA+AGG | 0.607337 | 3.4:-85714133 | MS.gene013426:intron |
| AGGGGTATGCAATGTGTGAA+AGG | 0.607645 | 3.4:+85713343 | None:intergenic |
| GTTGCTGCATCTCCTATCCA+AGG | 0.611677 | 3.4:-85713658 | MS.gene013426:intron |
| TTGCCAATGTTCTAGTGACA+GGG | 0.613980 | 3.4:+85712002 | None:intergenic |
| TCAGCTGGGAAATGATGCAA+GGG | 0.615707 | 3.4:+85714138 | None:intergenic |
| GGAGCTGTACCTGAGATCGC+TGG | 0.616055 | 3.4:-85714478 | MS.gene013426:CDS |
| CACAGCAAGAGCATCTACCC+TGG | 0.619097 | 3.4:+85713453 | None:intergenic |
| CTGAGCAAAGAGAAAAGAGG+AGG | 0.626217 | 3.4:-85715359 | MS.gene013426:CDS |
| TTCACTTTAACCTCTCTCTG+CGG | 0.632262 | 3.4:+85711956 | None:intergenic |
| TGACTTCGTCAAAGGCATCA+GGG | 0.632763 | 3.4:-85713742 | MS.gene013426:CDS |
| TGGATCTGACCGCACCGAGT+GGG | 0.633931 | 3.4:+85716187 | None:intergenic |
| GGGTAGATGCTCTTGCTGTG+GGG | 0.634455 | 3.4:-85713450 | MS.gene013426:CDS |
| GGTGTCTTGCAACTAGCTGA+AGG | 0.634721 | 3.4:-85713156 | MS.gene013426:CDS |
| TGCAATGTGTGAAAGGCACA+AGG | 0.637195 | 3.4:+85713350 | None:intergenic |
| ATTGGTCGGAGAGAAGGTTG+CGG | 0.638343 | 3.4:+85716088 | None:intergenic |
| TTGGCGAGGAGATCGTACTG+TGG | 0.638733 | 3.4:+85716210 | None:intergenic |
| AGAAGTGGGATCGGAACCGG+TGG | 0.644638 | 3.4:+85716146 | None:intergenic |
| CCTCGCCAACCCACTCGGTG+CGG | 0.644714 | 3.4:-85716196 | MS.gene013426:CDS |
| TGAATAAAACAATGAAGGCG+TGG | 0.644813 | 3.4:+85713946 | None:intergenic |
| CTGTGGGTGTAGAGAATGCA+AGG | 0.645939 | 3.4:-85713083 | MS.gene013426:CDS |
| GTTTCTGATTCAAAAGAGTG+TGG | 0.646460 | 3.4:+85712646 | None:intergenic |
| CATCTGAGCAAAGAGAAAAG+AGG | 0.648196 | 3.4:-85715362 | MS.gene013426:CDS |
| CACCAAAGCTTAAACACATG+AGG | 0.649903 | 3.4:+85712031 | None:intergenic |
| CCAATGTTCTAGTGACAGGG+TGG | 0.654124 | 3.4:+85712005 | None:intergenic |
| AGAACATTGGCAAATGACCA+AGG | 0.660030 | 3.4:-85711992 | MS.gene013426:CDS |
| ATCTGATCCAGAGCTTCAGG+AGG | 0.667439 | 3.4:-85714202 | MS.gene013426:CDS |
| GTTGAGGGTGATGAGGTCGA+AGG | 0.670154 | 3.4:-85715114 | MS.gene013426:CDS |
| TATGGAAGGATGGTTCGGTG+TGG | 0.673117 | 3.4:-85715749 | MS.gene013426:intron |
| ATAGTGGCTGGTGTGAGAAG+CGG | 0.674090 | 3.4:+85715943 | None:intergenic |
| GTGGATCTGACCGCACCGAG+TGG | 0.677758 | 3.4:+85716186 | None:intergenic |
| GGTTCCGGGACTGAATTCGT+GGG | 0.683130 | 3.4:-85715430 | MS.gene013426:CDS |
| ACATTGCATACCCCTTACAG+TGG | 0.700005 | 3.4:-85713335 | MS.gene013426:CDS |
| TATCAGCAGAGCAACCGACA+GGG | 0.700346 | 3.4:+85715688 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAATTATGATACAAAT+AGG | - | chr3.4:85714894-85714913 | MS.gene013426:intron | 15.0% |
| !! | AATGATTTCATAAATAAAAC+TGG | + | chr3.4:85713342-85713361 | None:intergenic | 15.0% |
| !! | AGATACTAATATATTATTCT+AGG | + | chr3.4:85713172-85713191 | None:intergenic | 15.0% |
| !! | TAGAGTTTAACTAATAATTA+GGG | + | chr3.4:85712183-85712202 | None:intergenic | 15.0% |
| !! | TTAGAGTTTAACTAATAATT+AGG | + | chr3.4:85712184-85712203 | None:intergenic | 15.0% |
| !!! | ATGTTTCTTTCATATATTTT+AGG | - | chr3.4:85712596-85712615 | MS.gene013426:intron | 15.0% |
| !!! | TGTTTCTTTCATATATTTTA+GGG | - | chr3.4:85712597-85712616 | MS.gene013426:intron | 15.0% |
| !!! | TTAACTTGTTTTTAATTTCA+TGG | - | chr3.4:85713838-85713857 | MS.gene013426:intron | 15.0% |
| !!! | TTCAAAAATAGAGTTAATTT+TGG | - | chr3.4:85712391-85712410 | MS.gene013426:intron | 15.0% |
| !!! | TTTAGATTTGTTAGAAATTA+TGG | - | chr3.4:85713196-85713215 | MS.gene013426:intron | 15.0% |
| !!! | TTTAGTATTCTATTTAGTTT+AGG | - | chr3.4:85713371-85713390 | MS.gene013426:CDS | 15.0% |
| !!! | TTTGTATCATAATTCTTTTT+TGG | + | chr3.4:85714893-85714912 | None:intergenic | 15.0% |
| !! | AATCAAATTCATAACACAAT+TGG | + | chr3.4:85713133-85713152 | None:intergenic | 20.0% |
| !! | AATGACATTTATTTATTCAC+AGG | - | chr3.4:85713040-85713059 | MS.gene013426:intron | 20.0% |
| !! | AGAAAAATCCGTAAATTTAT+TGG | + | chr3.4:85712457-85712476 | None:intergenic | 20.0% |
| !! | ATAAAACTGGTAAACTAAAT+AGG | + | chr3.4:85713329-85713348 | None:intergenic | 20.0% |
| !! | ATGTACTTTCATTACTAAAT+TGG | - | chr3.4:85712636-85712655 | MS.gene013426:intron | 20.0% |
| !! | ATTATGGATAACAAATATCT+TGG | + | chr3.4:85713273-85713292 | None:intergenic | 20.0% |
| !! | GATGTATTCATTAAGAAAAA+TGG | + | chr3.4:85715884-85715903 | None:intergenic | 20.0% |
| !! | GTGTTTACAAATAATAATGA+TGG | + | chr3.4:85715862-85715881 | None:intergenic | 20.0% |
| !! | TAAAACTGGTAAACTAAATA+GGG | + | chr3.4:85713328-85713347 | None:intergenic | 20.0% |
| !! | TGTAAACAATCAATAGAAAA+TGG | + | chr3.4:85715269-85715288 | None:intergenic | 20.0% |
| !!! | TATTCTGTTCTTTTAAGAAT+TGG | - | chr3.4:85713618-85713637 | MS.gene013426:intron | 20.0% |
| ! | AACCTAATGAAGCATAATTA+GGG | + | chr3.4:85712213-85712232 | None:intergenic | 25.0% |
| ! | AACTGACTAATTTCAAAGTT+GGG | - | chr3.4:85715670-85715689 | MS.gene013426:CDS | 25.0% |
| ! | AATTGGGATAATTCTTAACT+TGG | - | chr3.4:85714365-85714384 | MS.gene013426:intron | 25.0% |
| ! | AGTATTTCCAATATATTCCT+GGG | - | chr3.4:85715776-85715795 | MS.gene013426:intron | 25.0% |
| ! | ATGAATAAATCCATTTGAGT+GGG | + | chr3.4:85714308-85714327 | None:intergenic | 25.0% |
| ! | ATTACAAACATTCTCAAGAA+TGG | + | chr3.4:85714672-85714691 | None:intergenic | 25.0% |
| ! | ATTACTAAATTGGAAAGAGA+TGG | - | chr3.4:85712646-85712665 | MS.gene013426:CDS | 25.0% |
| ! | ATTGAATAATAGTGTTTCCA+AGG | - | chr3.4:85712702-85712721 | MS.gene013426:CDS | 25.0% |
| ! | ATTTAGTCTCATCATTGTTT+AGG | - | chr3.4:85713784-85713803 | MS.gene013426:intron | 25.0% |
| ! | ATTTATTTATTCACAGGTTG+AGG | - | chr3.4:85713046-85713065 | MS.gene013426:intron | 25.0% |
| ! | CAAAGTTAATGACAAACATT+TGG | - | chr3.4:85715297-85715316 | MS.gene013426:intron | 25.0% |
| ! | CATGTTAAAACTTATAAACC+AGG | + | chr3.4:85714177-85714196 | None:intergenic | 25.0% |
| ! | GAAGATAGTGATTTATCAAA+TGG | - | chr3.4:85714002-85714021 | MS.gene013426:intron | 25.0% |
| ! | GTAACCTAAAAATCTTTAAC+TGG | + | chr3.4:85715621-85715640 | None:intergenic | 25.0% |
| ! | GTCTATGGACATAAAAATTA+TGG | + | chr3.4:85713289-85713308 | None:intergenic | 25.0% |
| ! | TACTAAAAGAATGGTATGAA+TGG | - | chr3.4:85713094-85713113 | MS.gene013426:CDS | 25.0% |
| ! | TAGTATTTCCAATATATTCC+TGG | - | chr3.4:85715775-85715794 | MS.gene013426:intron | 25.0% |
| ! | TCATAAACTAAGGTTGTTTA+AGG | - | chr3.4:85715585-85715604 | MS.gene013426:intron | 25.0% |
| ! | TCTTAAAAGAACAGAATAGA+AGG | + | chr3.4:85713616-85713635 | None:intergenic | 25.0% |
| ! | TCTTGAGAATGTTTGTAATA+AGG | - | chr3.4:85714673-85714692 | MS.gene013426:intron | 25.0% |
| ! | TTCTCCTAATACTAAAAGAA+TGG | - | chr3.4:85713085-85713104 | MS.gene013426:CDS | 25.0% |
| ! | TTTAACAGTTGTTTATGCAT+AGG | - | chr3.4:85712725-85712744 | MS.gene013426:CDS | 25.0% |
| ! | TTTGGTTATGTCAATGTATA+TGG | - | chr3.4:85712409-85712428 | MS.gene013426:intron | 25.0% |
| !! | AATCTTACTTTCTTTTCACT+TGG | - | chr3.4:85715211-85715230 | MS.gene013426:intron | 25.0% |
| !! | AGTGATTTATCAAATGGATT+TGG | - | chr3.4:85714008-85714027 | MS.gene013426:intron | 25.0% |
| !! | CATACCATTCTTTTAGTATT+AGG | + | chr3.4:85713092-85713111 | None:intergenic | 25.0% |
| !! | CTTGGAAATGAATTTTATGT+TGG | - | chr3.4:85712311-85712330 | MS.gene013426:intron | 25.0% |
| !! | GTAACAGTTTTCATAAACTA+AGG | - | chr3.4:85715575-85715594 | MS.gene013426:intron | 25.0% |
| !! | TGAACCAGTTAAAGATTTTT+AGG | - | chr3.4:85715614-85715633 | MS.gene013426:intron | 25.0% |
| !! | TTTATTTATTCACAGGTTGA+GGG | - | chr3.4:85713047-85713066 | MS.gene013426:intron | 25.0% |
| !!! | AATGACATTTTTGAGTTTGT+GGG | - | chr3.4:85713942-85713961 | MS.gene013426:CDS | 25.0% |
| AAACATTTGGTATGTGTTTC+AGG | - | chr3.4:85715310-85715329 | MS.gene013426:intron | 30.0% | |
| AACCCTAATTATGCTTCATT+AGG | - | chr3.4:85712208-85712227 | MS.gene013426:CDS | 30.0% | |
| AAGGTTGCTGAAAAATGTAA+TGG | - | chr3.4:85715112-85715131 | MS.gene013426:CDS | 30.0% | |
| AATGCATAAATCACATGTGT+AGG | + | chr3.4:85714633-85714652 | None:intergenic | 30.0% | |
| AATTATTCACATTTCTCTCG+AGG | + | chr3.4:85712924-85712943 | None:intergenic | 30.0% | |
| ACAAGGAATGAACTCAATTA+AGG | + | chr3.4:85712892-85712911 | None:intergenic | 30.0% | |
| AGTTAAATGTGCGTAATAGT+TGG | - | chr3.4:85713522-85713541 | MS.gene013426:intron | 30.0% | |
| ATAAACTGGAAAAATACCAC+TGG | + | chr3.4:85713501-85713520 | None:intergenic | 30.0% | |
| ATTCATAACACAATTGGAGT+TGG | + | chr3.4:85713127-85713146 | None:intergenic | 30.0% | |
| CAAGGAATGAACTCAATTAA+GGG | + | chr3.4:85712891-85712910 | None:intergenic | 30.0% | |
| CAATGCTTGAAAAGATAGAA+AGG | + | chr3.4:85714567-85714586 | None:intergenic | 30.0% | |
| CATAAACAACTGTTAAACCT+TGG | + | chr3.4:85712722-85712741 | None:intergenic | 30.0% | |
| CTCATCTAGTTGTATTGTAA+AGG | - | chr3.4:85713757-85713776 | MS.gene013426:intron | 30.0% | |
| GAAAGAGATGGATAATTTAG+TGG | - | chr3.4:85712658-85712677 | MS.gene013426:CDS | 30.0% | |
| GAACCTAATGAAGCATAATT+AGG | + | chr3.4:85712214-85712233 | None:intergenic | 30.0% | |
| GAACTGACTAATTTCAAAGT+TGG | - | chr3.4:85715669-85715688 | MS.gene013426:CDS | 30.0% | |
| GATGAATAAATCCATTTGAG+TGG | + | chr3.4:85714309-85714328 | None:intergenic | 30.0% | |
| GATTTATTCATCTGAGCAAA+TGG | - | chr3.4:85714317-85714336 | MS.gene013426:intron | 30.0% | |
| GGATAACAAATATCTTGGTT+TGG | + | chr3.4:85713268-85713287 | None:intergenic | 30.0% | |
| GTGTTATGAATTTGATTGAC+TGG | - | chr3.4:85713136-85713155 | MS.gene013426:CDS | 30.0% | |
| GTTATGTCAATGTATATGGA+AGG | - | chr3.4:85712413-85712432 | MS.gene013426:intron | 30.0% | |
| TCCTGTGAATAAAACAATGA+AGG | + | chr3.4:85714238-85714257 | None:intergenic | 30.0% | |
| TCTAGTATGAGTTTATTGTC+TGG | - | chr3.4:85713722-85713741 | MS.gene013426:CDS | 30.0% | |
| TGAAATCCAACAAAATGACT+TGG | + | chr3.4:85712957-85712976 | None:intergenic | 30.0% | |
| TTCATAACACAATTGGAGTT+GGG | + | chr3.4:85713126-85713145 | None:intergenic | 30.0% | |
| ! | AAATGTAATGGAGTTGCAAA+AGG | - | chr3.4:85715124-85715143 | MS.gene013426:intron | 30.0% |
| ! | AACTACTTGAGTTTGATGAT+TGG | - | chr3.4:85713585-85713604 | MS.gene013426:intron | 30.0% |
| ! | ATTTTATGTTGGCGCTTTTA+AGG | - | chr3.4:85712322-85712341 | MS.gene013426:intron | 30.0% |
| ! | CGCACATTTAACTTATAAAC+TGG | + | chr3.4:85713515-85713534 | None:intergenic | 30.0% |
| ! | TCAAGCATTGTAAATGATCT+CGG | - | chr3.4:85714577-85714596 | MS.gene013426:intron | 30.0% |
| ! | TCTATTTAGTTTAGGAGTTC+TGG | - | chr3.4:85713379-85713398 | MS.gene013426:CDS | 30.0% |
| ! | TGATTTCAAGTACTACAAGA+TGG | - | chr3.4:85715340-85715359 | MS.gene013426:CDS | 30.0% |
| !! | AACAAATATCTTGGTTTGGA+TGG | + | chr3.4:85713264-85713283 | None:intergenic | 30.0% |
| !! | GTTTTAAGCTATGCATGTAT+AGG | + | chr3.4:85715740-85715759 | None:intergenic | 30.0% |
| !! | TCAAGCATACTTAGTCTTTT+TGG | - | chr3.4:85715904-85715923 | MS.gene013426:CDS | 30.0% |
| !!! | GAATGACATTTTTGAGTTTG+TGG | - | chr3.4:85713941-85713960 | MS.gene013426:CDS | 30.0% |
| AACTAGAGAAATCAGCAAAG+AGG | + | chr3.4:85715839-85715858 | None:intergenic | 35.0% | |
| AAGCACATGCTATCTTATCA+AGG | + | chr3.4:85714396-85714415 | None:intergenic | 35.0% | |
| AATGAACTCAATTAAGGGCA+AGG | + | chr3.4:85712886-85712905 | None:intergenic | 35.0% | |
| ACAAACATTCTCAAGAATGG+AGG | + | chr3.4:85714669-85714688 | None:intergenic | 35.0% | |
| ACACAACCATCCAAAAAGAA+AGG | + | chr3.4:85715173-85715192 | None:intergenic | 35.0% | |
| ACAGAGGAAAATGAGGAAAT+GGG | + | chr3.4:85713879-85713898 | None:intergenic | 35.0% | |
| AGCAATTAGCGTCTTGAATT+GGG | - | chr3.4:85714349-85714368 | MS.gene013426:intron | 35.0% | |
| AGTTGTTTATGCATAGGTTC+CGG | - | chr3.4:85712731-85712750 | MS.gene013426:CDS | 35.0% | |
| ATAAGCTCCCAGGAATATAT+TGG | + | chr3.4:85715786-85715805 | None:intergenic | 35.0% | |
| ATAGGTACAATTACATCAGC+TGG | + | chr3.4:85715422-85715441 | None:intergenic | 35.0% | |
| ATGTATATGGAAGGATGGTT+CGG | - | chr3.4:85712422-85712441 | MS.gene013426:intron | 35.0% | |
| CAAACATTCTCAAGAATGGA+GGG | + | chr3.4:85714668-85714687 | None:intergenic | 35.0% | |
| CAAGTACTACAAGATGGAAA+TGG | - | chr3.4:85715346-85715365 | MS.gene013426:CDS | 35.0% | |
| CATTGATCAAGTATCCTCAA+GGG | + | chr3.4:85714079-85714098 | None:intergenic | 35.0% | |
| CTATCATAGGCTTATTCTGA+AGG | + | chr3.4:85714280-85714299 | None:intergenic | 35.0% | |
| CTATTAAGAACAGCATACCT+TGG | + | chr3.4:85714538-85714557 | None:intergenic | 35.0% | |
| CTGATGTAATTGTACCTATC+CGG | - | chr3.4:85715423-85715442 | MS.gene013426:CDS | 35.0% | |
| GAGTTTGTATGCTAAGAGTA+AGG | + | chr3.4:85715647-85715666 | None:intergenic | 35.0% | |
| GATGAGACACAATTAAAAGC+TGG | - | chr3.4:85715059-85715078 | MS.gene013426:intron | 35.0% | |
| GTGGAGGACCAATAAATTTA+CGG | - | chr3.4:85712446-85712465 | MS.gene013426:intron | 35.0% | |
| GTTCAAGTATTCCACTGTAA+GGG | + | chr3.4:85714855-85714874 | None:intergenic | 35.0% | |
| GTTGTTTAAAGAAGTGGGAT+CGG | + | chr3.4:85712042-85712061 | None:intergenic | 35.0% | |
| GTTTCTGATTCAAAAGAGTG+TGG | + | chr3.4:85715533-85715552 | None:intergenic | 35.0% | |
| TACAGAGGAAAATGAGGAAA+TGG | + | chr3.4:85713880-85713899 | None:intergenic | 35.0% | |
| TACTCTTAGCATACAAACTC+AGG | - | chr3.4:85715647-85715666 | MS.gene013426:intron | 35.0% | |
| TAGCAATTAGCGTCTTGAAT+TGG | - | chr3.4:85714348-85714367 | MS.gene013426:intron | 35.0% | |
| TCAGAATAAGCCTATGATAG+AGG | - | chr3.4:85714280-85714299 | MS.gene013426:intron | 35.0% | |
| TCATTGATCAAGTATCCTCA+AGG | + | chr3.4:85714080-85714099 | None:intergenic | 35.0% | |
| TGAAACCCAATACTCTTGTT+CGG | - | chr3.4:85712264-85712283 | MS.gene013426:intron | 35.0% | |
| TGAATAAAACAATGAAGGCG+TGG | + | chr3.4:85714233-85714252 | None:intergenic | 35.0% | |
| TGAATACCCAAGATTTAAGC+AGG | - | chr3.4:85716016-85716035 | MS.gene013426:intron | 35.0% | |
| TGTCAATGTATATGGAAGGA+TGG | - | chr3.4:85712417-85712436 | MS.gene013426:intron | 35.0% | |
| TGTTCAAGTATTCCACTGTA+AGG | + | chr3.4:85714856-85714875 | None:intergenic | 35.0% | |
| TTATTACTACCTCCATGTGT+TGG | - | chr3.4:85713553-85713572 | MS.gene013426:intron | 35.0% | |
| TTCAAGTATTCCACTGTAAG+GGG | + | chr3.4:85714854-85714873 | None:intergenic | 35.0% | |
| ! | CATTTTACCCTCTAAATTGC+AGG | - | chr3.4:85714205-85714224 | MS.gene013426:CDS | 35.0% |
| ! | CTGAACAGATTGGTAACAAT+GGG | - | chr3.4:85716119-85716138 | MS.gene013426:CDS | 35.0% |
| ! | GTACTGAATAACTGACTCAT+AGG | - | chr3.4:85713474-85713493 | MS.gene013426:intron | 35.0% |
| ! | TATGCATGTATAGGTTGAAG+TGG | + | chr3.4:85715731-85715750 | None:intergenic | 35.0% |
| ! | TATGGCTGATATTTTGCTCA+AGG | - | chr3.4:85713214-85713233 | MS.gene013426:intron | 35.0% |
| ! | TCTGAACAGATTGGTAACAA+TGG | - | chr3.4:85716118-85716137 | MS.gene013426:CDS | 35.0% |
| ! | TGAAGTCTTGAACAGCTTTT+AGG | - | chr3.4:85713410-85713429 | MS.gene013426:CDS | 35.0% |
| ! | TTTTGAATCAGAAACTCAGC+AGG | - | chr3.4:85715538-85715557 | MS.gene013426:intron | 35.0% |
| !! | CCAACAAAATGACTTGGTAA+AGG | + | chr3.4:85712951-85712970 | None:intergenic | 35.0% |
| !! | CCTTTACCAAGTCATTTTGT+TGG | - | chr3.4:85712948-85712967 | MS.gene013426:intron | 35.0% |
| !! | CTCTTACTTTTACAGAGAGA+AGG | - | chr3.4:85713644-85713663 | MS.gene013426:intron | 35.0% |
| !! | GCCTTCATTGTTTTATTCAC+AGG | - | chr3.4:85714234-85714253 | MS.gene013426:CDS | 35.0% |
| !!! | AACTGTTAGTTTTGTCTGAG+GGG | - | chr3.4:85715381-85715400 | MS.gene013426:CDS | 35.0% |
| !!! | CAACTGTTAGTTTTGTCTGA+GGG | - | chr3.4:85715380-85715399 | MS.gene013426:CDS | 35.0% |
| AACAAAAGGTCAGGGAAGAA+AGG | + | chr3.4:85716087-85716106 | None:intergenic | 40.0% | |
| AACATTAGAGCGACGAGAAA+TGG | + | chr3.4:85712561-85712580 | None:intergenic | 40.0% | |
| AAGAACAGCATACCTTGGAT+AGG | + | chr3.4:85714533-85714552 | None:intergenic | 40.0% | |
| AAGGGCAAGGAAGAAATTAC+AGG | + | chr3.4:85712873-85712892 | None:intergenic | 40.0% | |
| AAGGTATGATTCATCCCTTG+AGG | - | chr3.4:85714062-85714081 | MS.gene013426:intron | 40.0% | |
| AATACTCTTGTTCGGTTTCG+TGG | - | chr3.4:85712272-85712291 | MS.gene013426:intron | 40.0% | |
| AATGCAAACTATAAGCTCCC+AGG | + | chr3.4:85715796-85715815 | None:intergenic | 40.0% | |
| ACTCCTATCTGCTTGTATTG+CGG | + | chr3.4:85715995-85716014 | None:intergenic | 40.0% | |
| AGAACATTGGCAAATGACCA+AGG | - | chr3.4:85716184-85716203 | MS.gene013426:CDS | 40.0% | |
| ATATACCTAGCATGGTACAG+AGG | + | chr3.4:85713895-85713914 | None:intergenic | 40.0% | |
| ATGAATCATACCTTGTCAGC+TGG | + | chr3.4:85714056-85714075 | None:intergenic | 40.0% | |
| ATTTCAAAGTTGGGCAGAAG+TGG | - | chr3.4:85715679-85715698 | MS.gene013426:CDS | 40.0% | |
| CAAGACACCAGTTTCTAATC+TGG | + | chr3.4:85715009-85715028 | None:intergenic | 40.0% | |
| CAATCTGTTCAGAGAAGGTA+GGG | + | chr3.4:85716111-85716130 | None:intergenic | 40.0% | |
| CAATGCTCCAGATTAGAAAC+TGG | - | chr3.4:85714999-85715018 | MS.gene013426:intron | 40.0% | |
| CACCAAAGCTTAAACACATG+AGG | + | chr3.4:85716148-85716167 | None:intergenic | 40.0% | |
| CACCAACCTGCTTAAATCTT+GGG | + | chr3.4:85716025-85716044 | None:intergenic | 40.0% | |
| CATCTGAGCAAAGAGAAAAG+AGG | - | chr3.4:85712814-85712833 | MS.gene013426:CDS | 40.0% | |
| CATTTGGTATGTGTTTCAGG+TGG | - | chr3.4:85715313-85715332 | MS.gene013426:intron | 40.0% | |
| CCTCAGACAAAACTAACAGT+TGG | + | chr3.4:85715382-85715401 | None:intergenic | 40.0% | |
| CTAAATCACTTTCTACCACC+TGG | + | chr3.4:85715969-85715988 | None:intergenic | 40.0% | |
| GAGATTGCTTTACTGTGTTC+CGG | - | chr3.4:85712527-85712546 | MS.gene013426:intron | 40.0% | |
| GCATAAATCACATGTGTAGG+AGG | + | chr3.4:85714630-85714649 | None:intergenic | 40.0% | |
| GGAATGATTCAGGATATGCT+TGG | - | chr3.4:85712293-85712312 | MS.gene013426:intron | 40.0% | |
| GGGTTTGATGTGATTTGAAG+TGG | + | chr3.4:85712163-85712182 | None:intergenic | 40.0% | |
| GTTACCAATCTGTTCAGAGA+AGG | + | chr3.4:85716116-85716135 | None:intergenic | 40.0% | |
| GTTGTTTATGCATAGGTTCC+GGG | - | chr3.4:85712732-85712751 | MS.gene013426:CDS | 40.0% | |
| TACCCAAGATTTAAGCAGGT+TGG | - | chr3.4:85716020-85716039 | MS.gene013426:intron | 40.0% | |
| TCACAGGAAACTTTCAGTTC+AGG | - | chr3.4:85714250-85714269 | MS.gene013426:CDS | 40.0% | |
| TCACCAACCTGCTTAAATCT+TGG | + | chr3.4:85716026-85716045 | None:intergenic | 40.0% | |
| TCAGATGTCCAATCCATAGA+TGG | + | chr3.4:85712801-85712820 | None:intergenic | 40.0% | |
| TCGCGGTTGTTTAAAGAAGT+GGG | + | chr3.4:85712047-85712066 | None:intergenic | 40.0% | |
| TGAATCATACCTTGTCAGCT+GGG | + | chr3.4:85714055-85714074 | None:intergenic | 40.0% | |
| TTACCTGAGAGAGATGTGAT+TGG | + | chr3.4:85712109-85712128 | None:intergenic | 40.0% | |
| TTCTTTAAACAACCGCGACT+GGG | - | chr3.4:85712049-85712068 | MS.gene013426:CDS | 40.0% | |
| TTGCCAATGTTCTAGTGACA+GGG | + | chr3.4:85716177-85716196 | None:intergenic | 40.0% | |
| TTGGCAAATGACCAAGGAAT+TGG | - | chr3.4:85716190-85716209 | MS.gene013426:CDS | 40.0% | |
| TTGGCAATCCATCTATGGAT+TGG | - | chr3.4:85712790-85712809 | MS.gene013426:CDS | 40.0% | |
| TTGTATGCTAAGAGTAAGGC+AGG | + | chr3.4:85715643-85715662 | None:intergenic | 40.0% | |
| TTTGCCAATGTTCTAGTGAC+AGG | + | chr3.4:85716178-85716197 | None:intergenic | 40.0% | |
| ! | ACGAAACCGAACAAGAGTAT+TGG | + | chr3.4:85712273-85712292 | None:intergenic | 40.0% |
| ! | AGCTCTCCTTTCTTTTTGGA+TGG | - | chr3.4:85715164-85715183 | MS.gene013426:intron | 40.0% |
| ! | ATTTTCCTCTGTACCATGCT+AGG | - | chr3.4:85713887-85713906 | MS.gene013426:intron | 40.0% |
| !! | CGAAACCGAACAAGAGTATT+GGG | + | chr3.4:85712272-85712291 | None:intergenic | 40.0% |
| !! | GTTTTGACGATTCCAACACA+TGG | + | chr3.4:85713568-85713587 | None:intergenic | 40.0% |
| !! | TAGTTGTTTTCCGATAGACG+CGG | + | chr3.4:85714789-85714808 | None:intergenic | 40.0% |
| !! | TGAACAGCTTTTAGGAGTTC+TGG | - | chr3.4:85713418-85713437 | MS.gene013426:CDS | 40.0% |
| !! | TTGGTTTGGATGGACTTGAT+TGG | + | chr3.4:85713254-85713273 | None:intergenic | 40.0% |
| !!! | CCAACTGTTAGTTTTGTCTG+AGG | - | chr3.4:85715379-85715398 | MS.gene013426:CDS | 40.0% |
| !!! | GGATTGATTTGCTTTTGACC+AGG | - | chr3.4:85714694-85714713 | MS.gene013426:intron | 40.0% |
| !!! | GTCTAGCTCTCCTTTCTTTT+TGG | - | chr3.4:85715160-85715179 | MS.gene013426:intron | 40.0% |
| !!! | TTGATTTGCTTTTGACCAGG+TGG | - | chr3.4:85714697-85714716 | MS.gene013426:intron | 40.0% |
| AACCATTTGCTTGGAAGCTG+TGG | - | chr3.4:85715454-85715473 | MS.gene013426:intron | 45.0% | |
| ACATTGCATACCCCTTACAG+TGG | - | chr3.4:85714841-85714860 | MS.gene013426:intron | 45.0% | |
| AGACATCTCTCAGCTGTTCT+AGG | - | chr3.4:85714468-85714487 | MS.gene013426:CDS | 45.0% | |
| AGAGAAGGTAGGGCAACAAA+AGG | + | chr3.4:85716101-85716120 | None:intergenic | 45.0% | |
| AGCAAAGAAACCGCGTCTAT+CGG | - | chr3.4:85714776-85714795 | MS.gene013426:intron | 45.0% | |
| AGCAATCTCCGTTCCCAAAT+AGG | + | chr3.4:85712516-85712535 | None:intergenic | 45.0% | |
| AGCAGTTGGCAATCCATCTA+TGG | - | chr3.4:85712785-85712804 | MS.gene013426:CDS | 45.0% | |
| AGCTGGAACTCTCAATTCTG+TGG | - | chr3.4:85715076-85715095 | MS.gene013426:intron | 45.0% | |
| CAAAGAGAAAAGAGGAGGAG+AGG | - | chr3.4:85712822-85712841 | MS.gene013426:CDS | 45.0% | |
| CCAAAACCTGACTTCGTCAA+AGG | - | chr3.4:85714426-85714445 | MS.gene013426:CDS | 45.0% | |
| CCAATCTGTTCAGAGAAGGT+AGG | + | chr3.4:85716112-85716131 | None:intergenic | 45.0% | |
| CCTACCTTCTCTGAACAGAT+TGG | - | chr3.4:85716109-85716128 | MS.gene013426:CDS | 45.0% | |
| CGCCTCATGTGTTTAAGCTT+TGG | - | chr3.4:85716143-85716162 | MS.gene013426:CDS | 45.0% | |
| CGTGGTACCTGCAATTTAGA+GGG | + | chr3.4:85714215-85714234 | None:intergenic | 45.0% | |
| CTCTGCTGATACGCCTATTT+GGG | - | chr3.4:85712500-85712519 | MS.gene013426:intron | 45.0% | |
| CTGAGAGAGATGTGATTGGT+CGG | + | chr3.4:85712105-85712124 | None:intergenic | 45.0% | |
| CTGAGCAAAGAGAAAAGAGG+AGG | - | chr3.4:85712817-85712836 | MS.gene013426:CDS | 45.0% | |
| CTGATACGCCTATTTGGGAA+CGG | - | chr3.4:85712505-85712524 | MS.gene013426:intron | 45.0% | |
| CTTCTTTAAACAACCGCGAC+TGG | - | chr3.4:85712048-85712067 | MS.gene013426:CDS | 45.0% | |
| GCATGGTACAGAGGAAAATG+AGG | + | chr3.4:85713886-85713905 | None:intergenic | 45.0% | |
| GCTGGAACTCTCAATTCTGT+GGG | - | chr3.4:85715077-85715096 | MS.gene013426:intron | 45.0% | |
| GGGTTTCACGTATCTGATAG+TGG | + | chr3.4:85712252-85712271 | None:intergenic | 45.0% | |
| GGTGTGTCATATACCTAGCA+TGG | + | chr3.4:85713903-85713922 | None:intergenic | 45.0% | |
| GGTTCAAGAGAAGAGAGTGA+AGG | + | chr3.4:85712142-85712161 | None:intergenic | 45.0% | |
| GTCGCGGTTGTTTAAAGAAG+TGG | + | chr3.4:85712048-85712067 | None:intergenic | 45.0% | |
| TAAAGAAGTGGGATCGGAAC+CGG | + | chr3.4:85712036-85712055 | None:intergenic | 45.0% | |
| TACATCTGATCCAGAGCTTC+AGG | - | chr3.4:85713971-85713990 | MS.gene013426:intron | 45.0% | |
| TCAGCTGGGAAATGATGCAA+GGG | + | chr3.4:85714041-85714060 | None:intergenic | 45.0% | |
| TCCAAGCAAATGGTTGCAGA+AGG | + | chr3.4:85715449-85715468 | None:intergenic | 45.0% | |
| TCGGTTTCGTGGAATGATTC+AGG | - | chr3.4:85712283-85712302 | MS.gene013426:intron | 45.0% | |
| TCTCAACATTCCATCCCTGT+CGG | - | chr3.4:85712474-85712493 | MS.gene013426:intron | 45.0% | |
| TCTCAAGAATGGAGGGCAAT+GGG | + | chr3.4:85714661-85714680 | None:intergenic | 45.0% | |
| TCTCGAGGCACAAAGAAACA+AGG | + | chr3.4:85712909-85712928 | None:intergenic | 45.0% | |
| TCTTTAAACAACCGCGACTG+GGG | - | chr3.4:85712050-85712069 | MS.gene013426:CDS | 45.0% | |
| TGAGTGGGTACCTCTATCAT+AGG | + | chr3.4:85714293-85714312 | None:intergenic | 45.0% | |
| TTCAGCTTCAGTTCAGACTC+TGG | + | chr3.4:85713924-85713943 | None:intergenic | 45.0% | |
| TTCCACAGCTTCCAAGCAAA+TGG | + | chr3.4:85715459-85715478 | None:intergenic | 45.0% | |
| TTCTCAAGAATGGAGGGCAA+TGG | + | chr3.4:85714662-85714681 | None:intergenic | 45.0% | |
| TTGACGATTCCAACACATGG+AGG | + | chr3.4:85713565-85713584 | None:intergenic | 45.0% | |
| TTGCCGCAATACAAGCAGAT+AGG | - | chr3.4:85715989-85716008 | MS.gene013426:intron | 45.0% | |
| ! | AGGGGTATGCAATGTGTGAA+AGG | + | chr3.4:85714836-85714855 | None:intergenic | 45.0% |
| ! | CCTTTGACGAAGTCAGGTTT+TGG | + | chr3.4:85714429-85714448 | None:intergenic | 45.0% |
| ! | CTTATAAACCAGGTGCTGTG+AGG | + | chr3.4:85714167-85714186 | None:intergenic | 45.0% |
| ! | TAACTGACTCATAGGTCCAG+TGG | - | chr3.4:85713482-85713501 | MS.gene013426:intron | 45.0% |
| ! | TGCAATGTGTGAAAGGCACA+AGG | + | chr3.4:85714829-85714848 | None:intergenic | 45.0% |
| !! | AAGCAGAAGCTTTGGAAGCT+TGG | - | chr3.4:85715477-85715496 | MS.gene013426:intron | 45.0% |
| !! | AATAGGGTACTGACGACTTG+AGG | + | chr3.4:85713312-85713331 | None:intergenic | 45.0% |
| !! | ATAGGGTACTGACGACTTGA+GGG | + | chr3.4:85713311-85713330 | None:intergenic | 45.0% |
| !! | GAAGCTCTGGATCAGATGTA+AGG | + | chr3.4:85713971-85713990 | None:intergenic | 45.0% |
| !! | GATAGAGGTACCCACTCAAA+TGG | - | chr3.4:85714295-85714314 | MS.gene013426:intron | 45.0% |
| !! | TGACTTCGTCAAAGGCATCA+GGG | - | chr3.4:85714434-85714453 | MS.gene013426:CDS | 45.0% |
| !! | TTCACGTATCTGATAGTGGC+TGG | + | chr3.4:85712248-85712267 | None:intergenic | 45.0% |
| ACGAGAAATGGACAGCTCAC+CGG | + | chr3.4:85712549-85712568 | None:intergenic | 50.0% | |
| ACTGACGACTTGAGGGTCTA+TGG | + | chr3.4:85713304-85713323 | None:intergenic | 50.0% | |
| AGCAAATGGTTGCAGAAGGC+CGG | + | chr3.4:85715445-85715464 | None:intergenic | 50.0% | |
| AGCTGTGGAAGCAGAAGCTT+TGG | - | chr3.4:85715469-85715488 | MS.gene013426:intron | 50.0% | |
| AGGTAGGGCAACAAAAGGTC+AGG | + | chr3.4:85716096-85716115 | None:intergenic | 50.0% | |
| ATACTAGAGCCAGCGATCTC+AGG | + | chr3.4:85713710-85713729 | None:intergenic | 50.0% | |
| ATAGTGGCTGGTGTGAGAAG+CGG | + | chr3.4:85712236-85712255 | None:intergenic | 50.0% | |
| ATCTGATCCAGAGCTTCAGG+AGG | - | chr3.4:85713974-85713993 | MS.gene013426:intron | 50.0% | |
| ATTGGTCGGAGAGAAGGTTG+CGG | + | chr3.4:85712091-85712110 | None:intergenic | 50.0% | |
| CCAATGTTCTAGTGACAGGG+TGG | + | chr3.4:85716174-85716193 | None:intergenic | 50.0% | |
| CCACCCTGTCACTAGAACAT+TGG | - | chr3.4:85716171-85716190 | MS.gene013426:CDS | 50.0% | |
| CGACCAATCACATCTCTCTC+AGG | - | chr3.4:85712103-85712122 | MS.gene013426:intron | 50.0% | |
| CTGATGCCTTTGACGAAGTC+AGG | + | chr3.4:85714435-85714454 | None:intergenic | 50.0% | |
| CTGTGGGTGTAGAGAATGCA+AGG | - | chr3.4:85715093-85715112 | MS.gene013426:CDS | 50.0% | |
| GAACCTTCAGCAGAAGCAGT+TGG | - | chr3.4:85712771-85712790 | MS.gene013426:CDS | 50.0% | |
| GCACAAGGTTCTTGACAGCA+TGG | + | chr3.4:85714814-85714833 | None:intergenic | 50.0% | |
| GCATCATTTCCCAGCTGACA+AGG | - | chr3.4:85714043-85714062 | MS.gene013426:intron | 50.0% | |
| GCCTTCTGCAACCATTTGCT+TGG | - | chr3.4:85715445-85715464 | MS.gene013426:intron | 50.0% | |
| GCGTGGTACCTGCAATTTAG+AGG | + | chr3.4:85714216-85714235 | None:intergenic | 50.0% | |
| GCTCTGCTGATACGCCTATT+TGG | - | chr3.4:85712499-85712518 | MS.gene013426:intron | 50.0% | |
| GGTAGGGCAACAAAAGGTCA+GGG | + | chr3.4:85716095-85716114 | None:intergenic | 50.0% | |
| GGTGTCTTGCAACTAGCTGA+AGG | - | chr3.4:85715020-85715039 | MS.gene013426:intron | 50.0% | |
| GTCAGCTGGGAAATGATGCA+AGG | + | chr3.4:85714042-85714061 | None:intergenic | 50.0% | |
| GTTGCTGCATCTCCTATCCA+AGG | - | chr3.4:85714518-85714537 | MS.gene013426:CDS | 50.0% | |
| TATCAGCAGAGCAACCGACA+GGG | + | chr3.4:85712491-85712510 | None:intergenic | 50.0% | |
| TTCTATGTCCTCACAGCACC+TGG | - | chr3.4:85714156-85714175 | MS.gene013426:CDS | 50.0% | |
| TTGCCAACTGCTTCTGCTGA+AGG | + | chr3.4:85712777-85712796 | None:intergenic | 50.0% | |
| ! | AGGGTAGATGCTCTTGCTGT+GGG | - | chr3.4:85714725-85714744 | MS.gene013426:intron | 50.0% |
| ! | GATGTGATTGGTCGGAGAGA+AGG | + | chr3.4:85712097-85712116 | None:intergenic | 50.0% |
| ! | TTCACAGGTTGAGGGTGATG+AGG | - | chr3.4:85713055-85713074 | MS.gene013426:CDS | 50.0% |
| ! | TTTTGACCAGGTGGAAGCCA+GGG | - | chr3.4:85714706-85714725 | MS.gene013426:intron | 50.0% |
| !! | AAGCTTTGGAAGCTTGGAGG+TGG | - | chr3.4:85715483-85715502 | MS.gene013426:intron | 50.0% |
| !! | CAGAAGCTTTGGAAGCTTGG+AGG | - | chr3.4:85715480-85715499 | MS.gene013426:intron | 50.0% |
| !! | CTGACTTCGTCAAAGGCATC+AGG | - | chr3.4:85714433-85714452 | MS.gene013426:CDS | 50.0% |
| !! | TATGGAAGGATGGTTCGGTG+TGG | - | chr3.4:85712427-85712446 | MS.gene013426:intron | 50.0% |
| AGGTTCCGGGACTGAATTCG+TGG | - | chr3.4:85712745-85712764 | MS.gene013426:CDS | 55.0% | |
| ATGGTTGCAGAAGGCCGGAT+AGG | + | chr3.4:85715440-85715459 | None:intergenic | 55.0% | |
| CAGGGTAGATGCTCTTGCTG+TGG | - | chr3.4:85714724-85714743 | MS.gene013426:intron | 55.0% | |
| GCGGAGTCTCTCCAATTCCT+TGG | + | chr3.4:85716204-85716223 | None:intergenic | 55.0% | |
| GGTTCCGGGACTGAATTCGT+GGG | - | chr3.4:85712746-85712765 | MS.gene013426:CDS | 55.0% | |
| GTATCAGCAGAGCAACCGAC+AGG | + | chr3.4:85712492-85712511 | None:intergenic | 55.0% | |
| GTTGAGGGTGATGAGGTCGA+AGG | - | chr3.4:85713062-85713081 | MS.gene013426:CDS | 55.0% | |
| TACAGCTCCCTGAGACTGAG+AGG | + | chr3.4:85713687-85713706 | None:intergenic | 55.0% | |
| TCGTTGTCCTCCTGAAGCTC+TGG | + | chr3.4:85713984-85714003 | None:intergenic | 55.0% | |
| TCTGCCCACGAATTCAGTCC+CGG | + | chr3.4:85712753-85712772 | None:intergenic | 55.0% | |
| TGGCGAGGAGATCGTACTGT+GGG | + | chr3.4:85711968-85711987 | None:intergenic | 55.0% | |
| TTGGCGAGGAGATCGTACTG+TGG | + | chr3.4:85711969-85711988 | None:intergenic | 55.0% | |
| ! | CTTTTGACCAGGTGGAAGCC+AGG | - | chr3.4:85714705-85714724 | MS.gene013426:intron | 55.0% |
| ! | GGGTAGATGCTCTTGCTGTG+GGG | - | chr3.4:85714726-85714745 | MS.gene013426:intron | 55.0% |
| !! | CACAGCAAGAGCATCTACCC+TGG | + | chr3.4:85714726-85714745 | None:intergenic | 55.0% |
| AGAAGTGGGATCGGAACCGG+TGG | + | chr3.4:85712033-85712052 | None:intergenic | 60.0% | |
| AGCAGAGCAACCGACAGGGA+TGG | + | chr3.4:85712487-85712506 | None:intergenic | 60.0% | |
| ATCGGAACCGGTGGCTATGG+CGG | + | chr3.4:85712024-85712043 | None:intergenic | 60.0% | |
| CATCTACCCTGGCTTCCACC+TGG | + | chr3.4:85714715-85714734 | None:intergenic | 60.0% | |
| CTCCCTGAGACTGAGAGGCA+GGG | + | chr3.4:85713682-85713701 | None:intergenic | 60.0% | |
| GATCTCCTCGCCAACCCACT+CGG | - | chr3.4:85711975-85711994 | MS.gene013426:CDS | 60.0% | |
| GGAGCTGTACCTGAGATCGC+TGG | - | chr3.4:85713698-85713717 | MS.gene013426:CDS | 60.0% | |
| TCCCCTGCCTCTCAGTCTCA+GGG | - | chr3.4:85713677-85713696 | MS.gene013426:CDS | 60.0% | |
| TCCCTGAGACTGAGAGGCAG+GGG | + | chr3.4:85713681-85713700 | None:intergenic | 60.0% | |
| TGGAGAGACTCCGCAGAGAG+AGG | - | chr3.4:85716210-85716229 | MS.gene013426:CDS | 60.0% | |
| TGGATCTGACCGCACCGAGT+GGG | + | chr3.4:85711992-85712011 | None:intergenic | 60.0% | |
| TTCCCCTGCCTCTCAGTCTC+AGG | - | chr3.4:85713676-85713695 | MS.gene013426:CDS | 60.0% | |
| !! | GGAAGGATGGTTCGGTGTGG+AGG | - | chr3.4:85712430-85712449 | MS.gene013426:intron | 60.0% |
| GATCGATGACGCCCCAGTCG+CGG | + | chr3.4:85712064-85712083 | None:intergenic | 65.0% | |
| GCTCCCTGAGACTGAGAGGC+AGG | + | chr3.4:85713683-85713702 | None:intergenic | 65.0% | |
| GGGATCGGAACCGGTGGCTA+TGG | + | chr3.4:85712027-85712046 | None:intergenic | 65.0% | |
| GTGGATCTGACCGCACCGAG+TGG | + | chr3.4:85711993-85712012 | None:intergenic | 65.0% | |
| TCTGACCGCACCGAGTGGGT+TGG | + | chr3.4:85711988-85712007 | None:intergenic | 65.0% | |
| TTCGACGCCGCCATAGCCAC+CGG | - | chr3.4:85712014-85712033 | MS.gene013426:CDS | 65.0% | |
| ! | CCTCGCCAACCCACTCGGTG+CGG | - | chr3.4:85711980-85711999 | MS.gene013426:CDS | 70.0% |
| ! | GGCTATGGCGGCGTCGAAGG+TGG | + | chr3.4:85712012-85712031 | None:intergenic | 70.0% |
| ! | GGTGGCTATGGCGGCGTCGA+AGG | + | chr3.4:85712015-85712034 | None:intergenic | 70.0% |
| !! | CCGCACCGAGTGGGTTGGCG+AGG | + | chr3.4:85711983-85712002 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85711957 | 85716241 | 85711957 | ID=MS.gene013426 |
| chr3.4 | mRNA | 85711957 | 85716241 | 85711957 | ID=MS.gene013426.t1;Parent=MS.gene013426 |
| chr3.4 | exon | 85716074 | 85716241 | 85716074 | ID=MS.gene013426.t1.exon1;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85716074 | 85716241 | 85716074 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85715855 | 85715968 | 85715855 | ID=MS.gene013426.t1.exon2;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85715855 | 85715968 | 85715855 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85715650 | 85715763 | 85715650 | ID=MS.gene013426.t1.exon3;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85715650 | 85715763 | 85715650 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85715326 | 85715451 | 85715326 | ID=MS.gene013426.t1.exon4;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85715326 | 85715451 | 85715326 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85715092 | 85715136 | 85715092 | ID=MS.gene013426.t1.exon5;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85715092 | 85715136 | 85715092 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85714420 | 85714539 | 85714420 | ID=MS.gene013426.t1.exon6;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85714420 | 85714539 | 85714420 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85714134 | 85714289 | 85714134 | ID=MS.gene013426.t1.exon7;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85714134 | 85714289 | 85714134 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85713897 | 85713971 | 85713897 | ID=MS.gene013426.t1.exon8;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85713897 | 85713971 | 85713897 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85713659 | 85713772 | 85713659 | ID=MS.gene013426.t1.exon9;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85713659 | 85713772 | 85713659 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85713283 | 85713482 | 85713283 | ID=MS.gene013426.t1.exon10;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85713283 | 85713482 | 85713283 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85713053 | 85713188 | 85713053 | ID=MS.gene013426.t1.exon11;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85713053 | 85713188 | 85713053 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85712639 | 85712866 | 85712639 | ID=MS.gene013426.t1.exon12;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85712639 | 85712866 | 85712639 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85712161 | 85712228 | 85712161 | ID=MS.gene013426.t1.exon13;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85712161 | 85712228 | 85712161 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| chr3.4 | exon | 85711957 | 85712071 | 85711957 | ID=MS.gene013426.t1.exon14;Parent=MS.gene013426.t1 |
| chr3.4 | CDS | 85711957 | 85712071 | 85711957 | ID=cds.MS.gene013426.t1;Parent=MS.gene013426.t1 |
| Gene Sequence |
| Protein sequence |
