AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013666

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013666.t1 MTR_3g090130 92.827 474 25 2 1 474 1 465 0.0 907
MS.gene013666.t1 MTR_5g072570 80.297 472 89 1 1 472 1 468 0.0 805
MS.gene013666.t1 MTR_3g090150 79.536 474 91 3 1 472 1 470 0.0 788
MS.gene013666.t1 MTR_7g021130 46.774 434 222 6 34 465 31 457 5.24e-141 412
MS.gene013666.t1 MTR_3g434850 45.175 456 238 6 12 465 9 454 2.22e-140 411
MS.gene013666.t1 MTR_8g099930 46.804 438 226 5 32 467 32 464 4.05e-140 410
MS.gene013666.t1 MTR_3g498755 45.890 438 228 6 32 465 13 445 7.73e-140 409
MS.gene013666.t1 MTR_2g449850 45.183 436 226 6 35 467 39 464 2.53e-130 385
MS.gene013666.t1 MTR_3g079590 47.235 434 206 9 30 461 74 486 3.97e-125 373
MS.gene013666.t1 MTR_3g079570 46.697 439 208 10 30 465 75 490 3.91e-123 368
MS.gene013666.t1 MTR_7g013790 42.072 473 253 7 6 469 8 468 1.02e-121 363
MS.gene013666.t1 MTR_3g079560 46.309 447 211 11 26 467 70 492 8.21e-121 362
MS.gene013666.t1 MTR_1g040370 42.342 444 205 7 24 465 21 415 6.15e-120 357
MS.gene013666.t1 MTR_3g034290 42.472 445 238 6 26 469 67 494 7.20e-120 360
MS.gene013666.t1 MTR_3g079600 44.766 449 225 11 26 471 68 496 5.10e-119 358
MS.gene013666.t1 MTR_4g075150 41.895 475 250 11 1 465 3 461 1.08e-117 353
MS.gene013666.t1 MTR_4g089155 42.478 452 238 8 27 467 47 487 1.43e-117 353
MS.gene013666.t1 MTR_4g075150 41.895 475 252 11 1 465 3 463 1.63e-117 353
MS.gene013666.t1 MTR_0003s0560 42.857 441 232 7 26 465 66 487 3.41e-117 353
MS.gene013666.t1 MTR_3g079620 44.053 454 217 12 30 471 74 502 4.47e-117 353
MS.gene013666.t1 MTR_1g095560 41.350 474 257 9 1 468 1 459 8.07e-116 348
MS.gene013666.t1 MTR_2g012860 42.731 454 238 9 22 466 34 474 5.01e-115 347
MS.gene013666.t1 MTR_1g021010 44.622 437 213 11 34 466 76 487 9.03e-114 344
MS.gene013666.t1 MTR_3g079630 44.079 456 215 12 30 471 74 503 9.35e-114 344
MS.gene013666.t1 MTR_2g012850 41.480 446 241 7 31 467 33 467 2.18e-113 342
MS.gene013666.t1 MTR_1g021020 44.647 439 213 11 32 466 76 488 1.02e-111 339
MS.gene013666.t1 MTR_1g020090 44.218 441 210 11 31 465 87 497 4.02e-111 338
MS.gene013666.t1 MTR_2g062990 40.972 432 240 8 37 465 43 462 4.35e-110 334
MS.gene013666.t1 MTR_2g063000 40.323 434 242 8 37 465 42 463 2.15e-109 332
MS.gene013666.t1 MTR_2g081620 39.863 439 249 8 37 472 44 470 2.81e-109 332
MS.gene013666.t1 MTR_1g095560 38.735 506 257 10 1 468 1 491 4.90e-109 332
MS.gene013666.t1 MTR_4g122950 38.983 472 248 11 21 469 27 481 1.67e-108 330
MS.gene013666.t1 MTR_1g095540 40.851 470 253 11 6 467 6 458 3.01e-107 326
MS.gene013666.t1 MTR_2g062980 39.954 433 243 9 37 465 43 462 1.19e-106 325
MS.gene013666.t1 MTR_4g122960 39.744 468 248 11 20 468 26 478 4.98e-106 324
MS.gene013666.t1 MTR_1g102130 40.181 443 225 10 32 470 90 496 2.06e-100 310
MS.gene013666.t1 MTR_3g034290 42.254 355 191 5 26 379 67 408 1.74e-94 292
MS.gene013666.t1 MTR_2g063000 35.731 431 235 8 37 465 42 432 1.39e-87 275
MS.gene013666.t1 MTR_0003s0560 46.992 266 132 4 26 290 66 323 9.81e-80 252
MS.gene013666.t1 MTR_7g051430 32.186 494 270 13 18 461 14 492 3.32e-73 239
MS.gene013666.t1 MTR_8g011350 31.677 483 270 12 29 464 26 495 2.08e-71 234
MS.gene013666.t1 MTR_7g080180 30.769 507 287 14 10 464 4 498 2.41e-71 234
MS.gene013666.t1 MTR_0075s0010 33.504 391 184 9 30 413 4 325 6.96e-63 207
MS.gene013666.t1 MTR_8g011350 31.140 456 254 12 29 437 26 468 9.06e-63 211
MS.gene013666.t1 MTR_7g080180 29.677 465 263 14 10 422 4 456 4.38e-58 199
MS.gene013666.t1 MTR_2g018630 29.754 447 282 13 33 464 36 465 1.42e-51 181
MS.gene013666.t1 MTR_7g051430 37.413 286 165 7 18 297 14 291 3.31e-51 179
MS.gene013666.t1 MTR_2g018600 28.571 455 284 14 33 464 33 469 4.02e-50 177
MS.gene013666.t1 MTR_4g021490 28.959 442 282 14 34 459 40 465 8.01e-50 177
MS.gene013666.t1 MTR_4g021510 30.112 445 273 15 34 459 39 464 7.96e-49 174
MS.gene013666.t1 MTR_4g021520 28.859 447 276 16 34 459 40 465 2.54e-48 172
MS.gene013666.t1 MTR_2g018590 28.419 468 299 15 18 464 17 469 5.38e-48 172
MS.gene013666.t1 MTR_4g021535 28.392 479 291 19 4 459 12 461 7.51e-48 171
MS.gene013666.t1 MTR_4g021530 27.069 447 284 16 34 459 40 465 2.48e-46 167
MS.gene013666.t1 MTR_1g050545 29.673 428 262 11 45 461 81 480 6.50e-45 164
MS.gene013666.t1 MTR_4g021500 27.828 442 285 15 34 458 40 464 1.13e-44 167
MS.gene013666.t1 MTR_4g021500 27.945 433 267 16 40 459 482 882 1.74e-40 155
MS.gene013666.t1 MTR_4g021500 27.828 442 285 15 34 458 40 464 1.14e-44 167
MS.gene013666.t1 MTR_4g021500 28.345 441 273 15 40 459 482 900 1.02e-41 159
MS.gene013666.t1 MTR_4g057585 28.372 430 277 13 39 461 87 492 4.56e-43 159
MS.gene013666.t1 MTR_3g100420 27.948 458 292 14 32 464 52 496 2.21e-42 157
MS.gene013666.t1 MTR_4g057595 28.504 421 271 12 47 461 97 493 3.85e-42 156
MS.gene013666.t1 MTR_2g095750 26.773 437 271 11 44 464 97 500 3.79e-41 154
MS.gene013666.t1 MTR_4g057570 28.074 431 270 13 45 462 87 490 2.38e-40 151
MS.gene013666.t1 MTR_1g094155 28.700 446 268 11 26 461 81 486 4.53e-40 151
MS.gene013666.t1 MTR_2g095730 26.304 441 289 11 27 462 86 495 5.85e-39 148
MS.gene013666.t1 MTR_4g021520 28.293 410 252 16 34 422 40 428 2.06e-37 142
MS.gene013666.t1 MTR_4g057600 26.241 423 284 10 45 462 93 492 5.35e-37 142
MS.gene013666.t1 MTR_3g045770 24.826 431 303 10 33 454 26 444 7.96e-37 141
MS.gene013666.t1 MTR_4g021535 26.160 474 253 19 9 459 15 414 5.38e-35 135
MS.gene013666.t1 MTR_4g084710 25.499 451 287 15 41 474 37 455 3.10e-34 134
MS.gene013666.t1 MTR_2g018630 28.291 357 231 10 117 464 20 360 3.74e-34 132
MS.gene013666.t1 MTR_5g097180 26.464 427 271 15 49 464 43 437 5.06e-34 133
MS.gene013666.t1 MTR_2g009200 25.386 453 271 17 32 460 26 435 1.91e-31 125
MS.gene013666.t1 MTR_8g007520 78.571 70 15 0 350 419 111 180 5.67e-30 115
MS.gene013666.t1 MTR_2g095710 25.057 439 277 14 38 464 85 483 3.07e-25 108
MS.gene013666.t1 MTR_4g056520 23.571 420 277 12 65 460 55 454 1.22e-22 100
MS.gene013666.t1 MTR_1g051175 50.588 85 39 2 41 124 20 102 5.78e-19 87.4
MS.gene013666.t1 MTR_7g100560 27.488 211 87 3 40 250 65 209 4.23e-17 82.8
MS.gene013666.t1 MTR_6g086380 68.889 45 14 0 424 468 56 100 1.38e-13 67.0
MS.gene013666.t1 MTR_2g039800 50.000 54 26 1 418 470 48 101 2.01e-11 60.8
MS.gene013666.t1 MTR_4g122970 40.000 80 41 4 4 80 12 87 3.31e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013666.t1 AT5G42240 74.000 450 117 0 25 474 24 473 0.0 712
MS.gene013666.t1 AT1G43780 70.536 448 131 1 26 472 30 477 0.0 697
MS.gene013666.t1 AT5G42230 68.502 454 141 1 17 468 10 463 0.0 666
MS.gene013666.t1 AT5G42230 68.502 454 141 1 17 468 10 463 0.0 666
MS.gene013666.t1 AT2G12480 67.888 464 138 4 12 472 7 462 0.0 663
MS.gene013666.t1 AT2G12480 64.655 464 129 5 12 472 7 438 0.0 620
MS.gene013666.t1 AT2G12480 64.224 464 129 5 12 472 7 436 0.0 615
MS.gene013666.t1 AT2G12480 64.086 465 129 6 12 472 7 437 0.0 610
MS.gene013666.t1 AT2G33530 48.513 437 218 5 32 466 32 463 3.00e-148 431
MS.gene013666.t1 AT1G28110 47.368 437 221 6 32 466 30 459 8.57e-142 415
MS.gene013666.t1 AT1G28110 47.368 437 221 6 32 466 30 459 8.57e-142 415
MS.gene013666.t1 AT4G30610 43.633 479 243 10 1 467 1 464 5.14e-123 367
MS.gene013666.t1 AT3G02110 41.350 474 250 8 6 465 12 471 7.07e-120 359
MS.gene013666.t1 AT2G24000 44.045 445 226 8 31 464 28 460 2.83e-119 357
MS.gene013666.t1 AT3G63470 42.325 456 241 9 17 469 65 501 3.05e-119 358
MS.gene013666.t1 AT5G23210 42.048 459 228 10 32 465 50 495 1.17e-116 352
MS.gene013666.t1 AT2G24010 43.280 439 234 7 31 467 28 453 2.30e-116 350
MS.gene013666.t1 AT4G30810 40.899 467 261 7 2 464 6 461 4.84e-115 347
MS.gene013666.t1 AT2G35780 42.955 440 231 9 31 465 27 451 2.87e-114 344
MS.gene013666.t1 AT5G08260 40.173 463 248 8 21 466 27 477 2.52e-113 343
MS.gene013666.t1 AT1G61130 42.664 443 237 10 30 465 28 460 2.99e-113 342
MS.gene013666.t1 AT2G24010 41.630 454 235 8 31 467 28 468 5.24e-111 336
MS.gene013666.t1 AT1G11080 41.758 455 232 10 31 465 48 489 2.69e-110 335
MS.gene013666.t1 AT1G11080 41.758 455 232 10 31 465 48 489 2.98e-110 335
MS.gene013666.t1 AT3G07990 40.950 442 245 8 30 467 30 459 6.60e-110 333
MS.gene013666.t1 AT2G35770 41.099 455 245 10 19 467 23 460 1.43e-109 332
MS.gene013666.t1 AT4G15100 40.586 478 259 9 5 467 16 483 1.03e-106 326
MS.gene013666.t1 AT3G17180 40.175 458 235 10 32 467 37 477 4.40e-105 322
MS.gene013666.t1 AT3G52020 40.590 441 241 10 31 467 77 500 1.02e-104 321
MS.gene013666.t1 AT2G24010 39.832 477 232 11 33 467 1 464 3.16e-104 319
MS.gene013666.t1 AT2G05850 39.865 444 242 8 31 467 61 486 1.87e-103 317
MS.gene013666.t1 AT3G52000 38.688 442 245 9 31 467 61 481 8.84e-103 315
MS.gene013666.t1 AT3G52010 40.000 445 239 10 31 467 62 486 1.19e-100 310
MS.gene013666.t1 AT5G23210 40.920 413 207 9 32 419 50 450 2.75e-99 306
MS.gene013666.t1 AT5G23210 39.120 409 211 10 82 465 5 400 9.78e-91 282
MS.gene013666.t1 AT5G23210 39.012 405 209 10 86 465 8 399 2.32e-89 278
MS.gene013666.t1 AT3G17180 38.293 410 214 10 32 419 37 429 5.99e-84 266
MS.gene013666.t1 AT2G24010 40.110 364 193 6 33 379 1 356 1.42e-82 259
MS.gene013666.t1 AT4G12910 32.465 499 289 13 5 464 8 497 2.14e-75 245
MS.gene013666.t1 AT5G23210 37.326 359 188 9 86 419 8 354 8.01e-72 232
MS.gene013666.t1 AT3G25420 31.328 482 273 10 29 464 25 494 3.92e-68 226
MS.gene013666.t1 AT4G12910 31.510 457 265 13 5 422 8 455 2.33e-61 207
MS.gene013666.t1 AT3G56540 57.962 157 64 2 31 186 77 232 9.77e-57 189
MS.gene013666.t1 AT1G33540 28.508 449 292 13 33 464 28 464 4.95e-52 182
MS.gene013666.t1 AT2G24000 36.877 301 168 7 174 464 109 397 8.34e-52 180
MS.gene013666.t1 AT2G24000 60.440 91 35 1 31 120 28 118 2.64e-27 113
MS.gene013666.t1 AT1G33540 28.605 430 279 12 51 464 4 421 5.25e-51 179
MS.gene013666.t1 AT2G22920 30.396 454 252 16 33 464 24 435 1.36e-50 178
MS.gene013666.t1 AT5G09640 29.806 463 271 16 33 464 26 465 2.29e-49 176
MS.gene013666.t1 AT2G22990 29.279 444 270 14 33 464 22 433 1.15e-48 173
MS.gene013666.t1 AT1G73290 29.318 440 271 12 33 464 31 438 1.81e-48 172
MS.gene013666.t1 AT1G73300 28.829 444 270 13 33 464 32 441 1.99e-48 172
MS.gene013666.t1 AT1G73300 28.829 444 270 13 33 464 32 441 1.99e-48 172
MS.gene013666.t1 AT3G45010 29.206 428 279 12 39 462 92 499 1.27e-47 172
MS.gene013666.t1 AT2G23000 29.083 447 269 16 33 464 24 437 5.84e-47 168
MS.gene013666.t1 AT2G23000 29.083 447 269 16 33 464 24 437 5.84e-47 168
MS.gene013666.t1 AT5G36180 28.507 442 274 14 33 464 32 441 1.70e-46 167
MS.gene013666.t1 AT1G73280 28.118 441 277 12 33 464 32 441 2.36e-46 167
MS.gene013666.t1 AT2G22970 29.505 444 267 15 33 464 24 433 5.73e-46 166
MS.gene013666.t1 AT2G22980 27.828 442 273 15 33 464 25 430 1.14e-45 165
MS.gene013666.t1 AT3G12203 29.032 434 273 11 37 464 12 416 1.24e-45 164
MS.gene013666.t1 AT1G73270 28.315 445 271 15 33 464 32 441 2.82e-45 164
MS.gene013666.t1 AT3G12203 29.032 434 273 11 37 464 33 437 2.86e-45 164
MS.gene013666.t1 AT1G73270 28.315 445 271 15 33 464 32 441 2.96e-45 164
MS.gene013666.t1 AT1G73310 27.169 438 285 11 33 464 32 441 4.12e-45 163
MS.gene013666.t1 AT5G22980 28.506 435 279 11 44 473 95 502 7.52e-45 164
MS.gene013666.t1 AT3G12240 27.664 441 279 13 33 464 27 436 8.31e-45 162
MS.gene013666.t1 AT3G10450 28.475 446 269 14 33 464 28 437 9.01e-45 162
MS.gene013666.t1 AT3G12230 27.891 441 278 14 33 464 26 435 1.04e-43 159
MS.gene013666.t1 AT3G10450 28.337 427 257 13 51 464 4 394 2.55e-43 157
MS.gene013666.t1 AT2G22990 29.187 418 253 13 33 438 22 408 2.57e-43 158
MS.gene013666.t1 AT2G22990 29.117 419 254 13 33 439 22 409 2.94e-43 159
MS.gene013666.t1 AT3G12203 29.167 408 255 10 62 464 1 379 3.79e-43 157
MS.gene013666.t1 AT2G23010 26.682 446 281 11 33 464 24 437 4.16e-43 158
MS.gene013666.t1 AT3G12220 27.438 441 280 13 33 464 26 435 6.67e-43 157
MS.gene013666.t1 AT2G23010 26.457 446 282 11 33 464 24 437 1.33e-42 156
MS.gene013666.t1 AT2G22990 28.604 444 264 15 33 464 22 424 2.39e-42 155
MS.gene013666.t1 AT2G22980 27.818 417 256 14 33 439 25 406 9.60e-42 154
MS.gene013666.t1 AT2G22970 29.762 420 250 14 33 440 24 410 1.09e-41 154
MS.gene013666.t1 AT2G22970 29.594 419 250 14 33 439 24 409 2.28e-41 152
MS.gene013666.t1 AT2G22980 27.885 416 255 14 33 438 25 405 2.80e-41 153
MS.gene013666.t1 AT3G12220 27.488 422 267 12 51 464 15 405 3.08e-41 152
MS.gene013666.t1 AT3G10410 28.276 435 284 13 39 468 90 501 9.12e-41 153
MS.gene013666.t1 AT2G22920 29.710 414 228 15 33 424 24 396 1.83e-40 150
MS.gene013666.t1 AT3G10450 28.266 421 253 13 33 439 28 413 6.91e-40 149
MS.gene013666.t1 AT3G10450 28.109 402 241 12 51 439 4 370 1.98e-38 144
MS.gene013666.t1 AT1G73290 28.250 400 248 11 33 424 31 399 3.38e-38 144
MS.gene013666.t1 AT1G73310 26.139 417 271 11 33 439 32 421 2.13e-35 137
MS.gene013666.t1 AT3G12220 25.285 439 240 11 33 464 26 383 3.85e-34 132
MS.gene013666.t1 AT1G15000 26.744 430 277 11 41 464 29 426 7.14e-34 132
MS.gene013666.t1 AT2G22920 35.268 224 134 5 33 248 24 244 3.48e-33 128
MS.gene013666.t1 AT1G73290 33.929 224 137 5 33 248 31 251 1.43e-31 123
MS.gene013666.t1 AT2G22970 34.821 224 134 5 33 248 24 243 2.06e-31 123
MS.gene013666.t1 AT2G22990 27.429 350 217 11 121 464 1 319 2.41e-30 120
MS.gene013666.t1 AT1G73280 29.167 264 168 6 33 281 32 291 3.36e-30 121
MS.gene013666.t1 AT1G73280 25.926 351 227 9 117 464 19 339 4.52e-30 120
MS.gene013666.t1 AT2G22990 27.143 350 218 11 121 464 1 319 1.42e-29 118
MS.gene013666.t1 AT5G36180 26.705 352 223 11 117 464 19 339 1.52e-29 118
MS.gene013666.t1 AT5G36180 26.705 352 223 11 117 464 19 339 1.52e-29 118
MS.gene013666.t1 AT2G22980 29.851 268 166 9 33 290 25 280 4.19e-29 117
MS.gene013666.t1 AT1G73280 25.581 344 223 9 124 464 1 314 5.35e-28 114
MS.gene013666.t1 AT5G36180 25.959 339 217 10 105 439 7 315 6.40e-25 105
MS.gene013666.t1 AT2G22980 24.768 323 205 11 121 439 1 289 7.57e-24 101
MS.gene013666.t1 AT5G22960 31.429 175 98 3 39 212 25 178 4.00e-22 94.0
MS.gene013666.t1 AT1G73310 24.159 327 218 8 117 439 19 319 1.20e-20 93.2
MS.gene013666.t1 AT5G36180 25.962 312 197 10 117 424 19 300 8.42e-20 90.9
MS.gene013666.t1 AT2G22920 27.797 295 156 13 186 464 3 256 7.35e-19 86.7
MS.gene013666.t1 AT2G27920 23.775 408 279 12 77 464 66 461 3.17e-18 87.4
MS.gene013666.t1 AT2G22960 28.169 142 94 4 323 464 51 184 1.62e-11 63.5

Find 118 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTGTAATCTTGAATTTC+AGG 0.179650 3.3:-75658736 None:intergenic
TTCAAAATCATATTCCAATA+TGG 0.199431 3.3:+75658545 MS.gene013666:CDS
TGGAAACCCACTTCTGAAAA+TGG 0.247519 3.3:+75657473 MS.gene013666:CDS
AGTTTCAAGTTCAACATAAA+AGG 0.261935 3.3:+75657280 MS.gene013666:CDS
ATATTCCAATATGGGTTTAT+AGG 0.279113 3.3:+75658554 MS.gene013666:CDS
AGCTTGTTGGTAACAACAAT+TGG 0.326510 3.3:+75655617 MS.gene013666:CDS
TGCCATATGGACAACCTTCT+AGG 0.327165 3.3:+75658975 MS.gene013666:CDS
CCATCACCAGAAGGATAAAA+TGG 0.329912 3.3:-75656276 None:intergenic
ATGAAATTGGTCTTGCCATT+AGG 0.331349 3.3:+75657550 MS.gene013666:CDS
TTACAGACTCATATAGAGTT+TGG 0.337975 3.3:+75658750 MS.gene013666:CDS
TCGAGGAAGTTGTTTCTTAC+CGG 0.344513 3.3:+75656904 MS.gene013666:CDS
GATTCAGTTGTTCCATTACT+AGG 0.346899 3.3:+75658680 MS.gene013666:CDS
GGAGGTTGGGTAACTGAGTA+TGG 0.355586 3.3:+75658908 MS.gene013666:CDS
TGAACTATCCGTTTGAGAAT+TGG 0.357516 3.3:-75658526 None:intergenic
CATATACATACCTGTATTCC+AGG 0.358264 3.3:-75656325 None:intergenic
TCAAAATCATATTCCAATAT+GGG 0.358601 3.3:+75658546 MS.gene013666:CDS
TTCACAACTAGATCTTCAAT+TGG 0.361948 3.3:-75655653 None:intergenic
CTACACATGCCCCATGGATA+TGG 0.362091 3.3:-75657985 None:intergenic
AGTTTCCAATCTCCTCTTTG+TGG 0.370612 3.3:+75656608 MS.gene013666:intron
AACTACCTATAAACCCATAT+TGG 0.374766 3.3:-75658559 None:intergenic
TACAATTCATTCTCCAATTG+AGG 0.378099 3.3:-75659056 None:intergenic
AAGCAACATATGAATATTAC+TGG 0.389075 3.3:+75657508 MS.gene013666:CDS
GTGTTGTTTGTGGTGGCATA+TGG 0.390969 3.3:+75655593 MS.gene013666:CDS
CTGGTCACACGGAATGATTT+CGG 0.395080 3.3:+75657527 MS.gene013666:CDS
ATTGAGGGTTTAGTAGTGTT+TGG 0.395143 3.3:-75659040 None:intergenic
GCCCTAGAAGGTTGTCCATA+TGG 0.398512 3.3:-75658977 None:intergenic
TTGACTTTCGCCACTGTAAG+AGG 0.404074 3.3:+75658938 MS.gene013666:CDS
ATATATTTACCTGCCCTTTG+TGG 0.407790 3.3:-75658775 None:intergenic
CTCTTTGTGGAGTCTCCCGC+TGG 0.412475 3.3:+75656621 MS.gene013666:CDS
GGAATGATTTCGGATGAAAT+TGG 0.412496 3.3:+75657537 MS.gene013666:CDS
AATTCAAAGTCCTGGAATAC+AGG 0.414065 3.3:+75656315 MS.gene013666:CDS
ATATTGACTGAATTTAACTT+TGG 0.416798 3.3:-75655690 None:intergenic
ATGGGAAAGTGTTGGTTTGT+TGG 0.421010 3.3:+75655569 MS.gene013666:CDS
TATTGACTGAATTTAACTTT+GGG 0.423688 3.3:-75655689 None:intergenic
GCTTGTTGGTAACAACAATT+GGG 0.424484 3.3:+75655618 MS.gene013666:CDS
ATTTCTTGTTCAGCTATAGC+TGG 0.425988 3.3:-75657711 None:intergenic
GTAACAACAATTGGGGTAGA+AGG 0.426136 3.3:+75655626 MS.gene013666:CDS
TATTACCTCCATTGAGCCAT+AGG 0.439967 3.3:-75655805 None:intergenic
AAAATCACAATCATTCCTAA+TGG 0.440186 3.3:-75657565 None:intergenic
AACACTACTAAACCCTCAAT+TGG 0.441749 3.3:+75659043 MS.gene013666:CDS
AACTTCCTCGATTTGTATGA+AGG 0.442362 3.3:-75656892 None:intergenic
GTAATGGAACAACTGAATCT+TGG 0.442814 3.3:-75658676 None:intergenic
TACGAAGAAATTCAAAGTCC+TGG 0.444786 3.3:+75656307 MS.gene013666:CDS
AATAGATGTAATGCCCTAGA+AGG 0.456374 3.3:-75658989 None:intergenic
GTTTGTTGGAGTGTTGTTTG+TGG 0.459216 3.3:+75655583 MS.gene013666:CDS
AAAAGCACCTCCTCCGATAG+AGG 0.462804 3.3:-75656241 None:intergenic
TGGAGAGCCTTCTGAACCTC+AGG 0.468727 3.3:-75657943 None:intergenic
GTGGAGTCTCCCGCTGGAGT+TGG 0.470449 3.3:+75656627 MS.gene013666:CDS
ATAGAGTTTGGTTCCACAAA+GGG 0.470528 3.3:+75658762 MS.gene013666:CDS
GCGGGTCACATGGTGCCATA+TGG 0.470975 3.3:+75658962 MS.gene013666:CDS
TACTAATCTGCCATATCCAT+GGG 0.479527 3.3:+75657975 MS.gene013666:CDS
GTTAAATTCAGTCAATATGC+TGG 0.485104 3.3:+75655695 MS.gene013666:CDS
CCTCTCACCCTATGGCTCAA+TGG 0.485243 3.3:+75655797 MS.gene013666:CDS
GACTGAATTTAACTTTGGGT+TGG 0.486607 3.3:-75655685 None:intergenic
ACAACTTCTGATTATAACAT+TGG 0.489905 3.3:+75656666 MS.gene013666:CDS
AGACTCCACAAAGAGGAGAT+TGG 0.491453 3.3:-75656613 None:intergenic
GATCTAGTTGTGAAGTTGCC+AGG 0.494140 3.3:+75655662 MS.gene013666:CDS
TGGACCTGCATAGCTTTCTC+CGG 0.497380 3.3:-75656923 None:intergenic
TATCCTTCTGGTGATGGACG+CGG 0.498312 3.3:+75656282 MS.gene013666:CDS
CAGGAACAAAAGCATGTCAT+TGG 0.499350 3.3:-75656848 None:intergenic
ACAATTCATTCTCCAATTGA+GGG 0.500289 3.3:-75659055 None:intergenic
AATTTAACTTTGGGTTGGCC+TGG 0.501987 3.3:-75655680 None:intergenic
ATATGCTTCCAATTCTCAAA+CGG 0.502822 3.3:+75658518 MS.gene013666:CDS
TGTTGGAGTGTTGTTTGTGG+TGG 0.503160 3.3:+75655586 MS.gene013666:CDS
TTCGCCACTGTAAGAGGAGC+GGG 0.509393 3.3:+75658944 MS.gene013666:CDS
GCCATATGGACAACCTTCTA+GGG 0.514262 3.3:+75658976 MS.gene013666:CDS
ATTATAATCAAGAATGGCAT+TGG 0.521613 3.3:-75657245 None:intergenic
CTATTCAGCTCCTTTGTGCA+TGG 0.523679 3.3:+75659007 MS.gene013666:CDS
TTATTAGAATGGGAAAGTGT+TGG 0.524595 3.3:+75655561 None:intergenic
CTTACCGGAGAAAGCTATGC+AGG 0.524600 3.3:+75656919 MS.gene013666:CDS
TCTGAACCTCAGGCAGGTTG+AGG 0.529529 3.3:-75657933 None:intergenic
GGTCCGGGATGTTCCTCTAT+CGG 0.532762 3.3:+75656228 MS.gene013666:intron
ATGAGCATTATAATCAAGAA+TGG 0.534017 3.3:-75657251 None:intergenic
AACATTGGTGACGCCTCCAC+AGG 0.534280 3.3:+75656681 MS.gene013666:CDS
ATTACCTCCATTGAGCCATA+GGG 0.535044 3.3:-75655804 None:intergenic
TCACAACTAGATCTTCAATT+GGG 0.535707 3.3:-75655652 None:intergenic
GTACTAATCTGCCATATCCA+TGG 0.541288 3.3:+75657974 MS.gene013666:CDS
ACTTCTCGTACCATTTCAGC+AGG 0.548397 3.3:-75656867 None:intergenic
GGTGGCATATGGAAGCTTGT+TGG 0.550255 3.3:+75655604 MS.gene013666:CDS
ATACGTTATGAGTAGTTGCA+TGG 0.562834 3.3:-75657599 None:intergenic
GCAGATTAGTACGGTTGGCA+TGG 0.563219 3.3:-75657963 None:intergenic
AGAATGGCATTGGCTAATTG+AGG 0.563874 3.3:-75657235 None:intergenic
CAACCTGCCTGAGGTTCAGA+AGG 0.564507 3.3:+75657936 MS.gene013666:CDS
GAGCCTTCTGAACCTCAGGC+AGG 0.567516 3.3:-75657939 None:intergenic
AGTTTGGTTCCACAAAGGGC+AGG 0.573792 3.3:+75658766 MS.gene013666:CDS
GGATGTTCCTCTATCGGAGG+AGG 0.577355 3.3:+75656234 MS.gene013666:CDS
TATGACCAACCAACTCCAGC+GGG 0.579633 3.3:-75656636 None:intergenic
ATATGGCAGATTAGTACGGT+TGG 0.580186 3.3:-75657968 None:intergenic
AGTCTCCCGCTGGAGTTGGT+TGG 0.582374 3.3:+75656631 MS.gene013666:CDS
ATGGATATGGCAGATTAGTA+CGG 0.582412 3.3:-75657972 None:intergenic
GCATGTGTAGGCTGGAGGTT+GGG 0.585017 3.3:+75658895 MS.gene013666:intron
ATTGGAAGCATATTAGCGTA+AGG 0.588336 3.3:-75658508 None:intergenic
TAACAACAATTGGGGTAGAA+GGG 0.589048 3.3:+75655627 MS.gene013666:CDS
TACGTTATGAGTAGTTGCAT+GGG 0.589405 3.3:-75657598 None:intergenic
TGCATGTGTAGGCTGGAGGT+TGG 0.590249 3.3:+75658894 MS.gene013666:intron
AGTGTTCGAGAACCTAGTAA+TGG 0.592866 3.3:-75658692 None:intergenic
CCATTGAGCCATAGGGTGAG+AGG 0.592895 3.3:-75655797 None:intergenic
GTTGATATAGATATAAAACA+TGG 0.595163 3.3:+75655722 MS.gene013666:CDS
TGTAAGAGGAGCGGGTCACA+TGG 0.600160 3.3:+75658952 MS.gene013666:CDS
TACTCACTACACATGCCCCA+TGG 0.601045 3.3:-75657991 None:intergenic
TATAGAGTTTGGTTCCACAA+AGG 0.604917 3.3:+75658761 MS.gene013666:CDS
AGTTTCCTTCATACAAATCG+AGG 0.605088 3.3:+75656887 MS.gene013666:CDS
TAATTACCTCAACCTGCCTG+AGG 0.606984 3.3:+75657927 MS.gene013666:CDS
GTGACCCGCTCCTCTTACAG+TGG 0.608929 3.3:-75658948 None:intergenic
CCTCCGATAGAGGAACATCC+CGG 0.613367 3.3:-75656231 None:intergenic
CAATCTCTTTCCATGCACAA+AGG 0.621559 3.3:-75659017 None:intergenic
TTGATATAGATATAAAACAT+GGG 0.633528 3.3:+75655723 MS.gene013666:CDS
CCGGGATGTTCCTCTATCGG+AGG 0.639230 3.3:+75656231 MS.gene013666:CDS
CTCACCCTATGGCTCAATGG+AGG 0.646306 3.3:+75655800 MS.gene013666:CDS
TATGAATATTACTGGTCACA+CGG 0.646588 3.3:+75657516 MS.gene013666:CDS
CAGCGGGAGACTCCACAAAG+AGG 0.654135 3.3:-75656620 None:intergenic
AGACCGCGTCCATCACCAGA+AGG 0.655604 3.3:-75656285 None:intergenic
TTTCGCCACTGTAAGAGGAG+CGG 0.662666 3.3:+75658943 MS.gene013666:CDS
CTTGTTGGTAACAACAATTG+GGG 0.679916 3.3:+75655619 MS.gene013666:CDS
ATATAGATATAAAACATGGG+AGG 0.711528 3.3:+75655726 MS.gene013666:CDS
TTAATGCATGTGTAGGCTGG+AGG 0.712606 3.3:+75658890 MS.gene013666:intron
GTATGACCAACCAACTCCAG+CGG 0.719006 3.3:-75656637 None:intergenic
ACTAATCTGCCATATCCATG+GGG 0.764052 3.3:+75657976 MS.gene013666:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACGATAAATTATTAAATT+TGG - chr3.3:75656969-75656988 None:intergenic 10.0%
!! ATAAATAAATTGTTCTTTAT+TGG + chr3.3:75656174-75656193 MS.gene013666:intron 10.0%
!! CTTTGATATATAAATATTAT+TGG + chr3.3:75658173-75658192 MS.gene013666:intron 10.0%
!!! AATTTGTTAGTTTTATTATT+AGG + chr3.3:75656792-75656811 MS.gene013666:intron 10.0%
!! AACATACGAAATTAAATAAA+AGG - chr3.3:75655895-75655914 None:intergenic 15.0%
!! ACATCTTAAAATAAAGAAAA+AGG - chr3.3:75656096-75656115 None:intergenic 15.0%
!! ATTTAATATATCATGTGAAT+CGG - chr3.3:75657320-75657339 None:intergenic 15.0%
!! TCATAATAATTTAACAAGTA+TGG - chr3.3:75658647-75658666 None:intergenic 15.0%
!! TTGATATAGATATAAAACAT+GGG + chr3.3:75655723-75655742 MS.gene013666:CDS 15.0%
!! TTGTTAAATTATTATGATAG+TGG + chr3.3:75658650-75658669 MS.gene013666:intron 15.0%
!! TTTCAATATGCAAAAAAATT+AGG - chr3.3:75658819-75658838 None:intergenic 15.0%
!!! ATTAAATTGGTTAATTTTCT+AGG + chr3.3:75656207-75656226 MS.gene013666:intron 15.0%
!!! TATTTTTTGTATGTTATACA+TGG + chr3.3:75656769-75656788 MS.gene013666:intron 15.0%
!!! TTAAATTAATTTTGTCTACA+AGG - chr3.3:75658073-75658092 None:intergenic 15.0%
!! AAAAATTAAATTTAGTGTCG+TGG + chr3.3:75656998-75657017 MS.gene013666:intron 20.0%
!! AATAAATTGTTCTTTATTGG+AGG + chr3.3:75656177-75656196 MS.gene013666:intron 20.0%
!! AATTTGATTATTGTGTTTGT+TGG - chr3.3:75656946-75656965 None:intergenic 20.0%
!! AGAGATATAATTGATATGAA+TGG + chr3.3:75658216-75658235 MS.gene013666:intron 20.0%
!! ATAAATTGTTCTTTATTGGA+GGG + chr3.3:75656178-75656197 MS.gene013666:intron 20.0%
!! ATAATTTAACAAGTATGGTA+AGG - chr3.3:75658642-75658661 None:intergenic 20.0%
!! CAAAAGTTATAATAATCCAA+AGG - chr3.3:75657763-75657782 None:intergenic 20.0%
!! GTTGATATAGATATAAAACA+TGG + chr3.3:75655722-75655741 MS.gene013666:CDS 20.0%
!! TAAAAAATTAATGCATGTGT+AGG + chr3.3:75658883-75658902 MS.gene013666:intron 20.0%
!! TCAAAATCATATTCCAATAT+GGG + chr3.3:75658546-75658565 MS.gene013666:CDS 20.0%
!! TTCAAAATCATATTCCAATA+TGG + chr3.3:75658545-75658564 MS.gene013666:CDS 20.0%
!! TTGATATTTGAGAATTATGT+GGG + chr3.3:75656538-75656557 MS.gene013666:intron 20.0%
!! TTTGATATTTGAGAATTATG+TGG + chr3.3:75656537-75656556 MS.gene013666:intron 20.0%
!! TTTGTTTATTTCATTAATGC+AGG + chr3.3:75657855-75657874 MS.gene013666:intron 20.0%
!!! ACGACACTAAATTTAATTTT+TGG - chr3.3:75656999-75657018 None:intergenic 20.0%
!!! AGATATTGACTACATAAATT+TGG - chr3.3:75656728-75656747 None:intergenic 20.0%
!!! ATATTGACTGAATTTAACTT+TGG - chr3.3:75655693-75655712 None:intergenic 20.0%
!!! ATGATATAATTTTGTTAAGC+TGG - chr3.3:75656043-75656062 None:intergenic 20.0%
!!! ATTATTATAACTTTTGCCTT+TGG + chr3.3:75657767-75657786 MS.gene013666:intron 20.0%
!!! ATTGAAAATTGATTTGAGTA+TGG + chr3.3:75658832-75658851 MS.gene013666:intron 20.0%
!!! TATTGACTGAATTTAACTTT+GGG - chr3.3:75655692-75655711 None:intergenic 20.0%
! AAAATCACAATCATTCCTAA+TGG - chr3.3:75657568-75657587 None:intergenic 25.0%
! AAATATTCAATTTAGCAGAG+AGG + chr3.3:75657025-75657044 MS.gene013666:intron 25.0%
! AAGCAACATATGAATATTAC+TGG + chr3.3:75657508-75657527 MS.gene013666:CDS 25.0%
! ACAACTTCTGATTATAACAT+TGG + chr3.3:75656666-75656685 MS.gene013666:CDS 25.0%
! ACATGAACAATATATAAGTC+AGG - chr3.3:75656574-75656593 None:intergenic 25.0%
! AGAAATCAGATTGAAAAAGA+TGG + chr3.3:75657728-75657747 MS.gene013666:CDS 25.0%
! AGATGATTTGAATTTGATGT+TGG - chr3.3:75656144-75656163 None:intergenic 25.0%
! ATATAGATATAAAACATGGG+AGG + chr3.3:75655726-75655745 MS.gene013666:CDS 25.0%
! ATATTCCAATATGGGTTTAT+AGG + chr3.3:75658554-75658573 MS.gene013666:CDS 25.0%
! ATGAGCATTATAATCAAGAA+TGG - chr3.3:75657254-75657273 None:intergenic 25.0%
! ATGTTTACTATGATCATATG+AGG - chr3.3:75658398-75658417 None:intergenic 25.0%
! ATTATAATCAAGAATGGCAT+TGG - chr3.3:75657248-75657267 None:intergenic 25.0%
! CAAATTCAAATCATCTTACA+AGG + chr3.3:75656148-75656167 MS.gene013666:intron 25.0%
! TAAATTGTTCTTTATTGGAG+GGG + chr3.3:75656179-75656198 MS.gene013666:intron 25.0%
! TGAATGGAGTTTACAAATAT+AGG + chr3.3:75658232-75658251 MS.gene013666:intron 25.0%
! TTCCAATCTAACAAAGTTAA+GGG - chr3.3:75657458-75657477 None:intergenic 25.0%
! TTTCCAATCTAACAAAGTTA+AGG - chr3.3:75657459-75657478 None:intergenic 25.0%
!! TCTTACATACTAACATTTTC+AGG + chr3.3:75657202-75657221 MS.gene013666:intron 25.0%
!! TTGTTATCATGAAGTTTTAC+CGG + chr3.3:75658038-75658057 MS.gene013666:intron 25.0%
!! TTTTATGTTGAACTTGAAAC+TGG - chr3.3:75657281-75657300 None:intergenic 25.0%
!!! AGTTTCAAGTTCAACATAAA+AGG + chr3.3:75657280-75657299 MS.gene013666:CDS 25.0%
!!! ATTTCGTATGTTGATAGTAT+AGG + chr3.3:75655903-75655922 MS.gene013666:intron 25.0%
!!! TCTCTTCTATTATTTTGTTG+AGG + chr3.3:75655751-75655770 MS.gene013666:CDS 25.0%
AAAACCTATGTCATCATTTC+TGG + chr3.3:75657088-75657107 MS.gene013666:intron 30.0%
AACCATCAAATTTACTAGCT+AGG + chr3.3:75658320-75658339 MS.gene013666:intron 30.0%
AACTACCTATAAACCCATAT+TGG - chr3.3:75658562-75658581 None:intergenic 30.0%
AGTCTGTAATCTTGAATTTC+AGG - chr3.3:75658739-75658758 None:intergenic 30.0%
ATATGCTTCCAATTCTCAAA+CGG + chr3.3:75658518-75658537 MS.gene013666:CDS 30.0%
GTTAAATTCAGTCAATATGC+TGG + chr3.3:75655695-75655714 MS.gene013666:CDS 30.0%
TAGGCAAAAGAACACAATTA+AGG - chr3.3:75657157-75657176 None:intergenic 30.0%
TATGAATATTACTGGTCACA+CGG + chr3.3:75657516-75657535 MS.gene013666:CDS 30.0%
TCACAACTAGATCTTCAATT+GGG - chr3.3:75655655-75655674 None:intergenic 30.0%
TGGAGGGGAATTAATTAAAT+TGG + chr3.3:75656194-75656213 MS.gene013666:intron 30.0%
TTACAGACTCATATAGAGTT+TGG + chr3.3:75658750-75658769 MS.gene013666:CDS 30.0%
TTCACAACTAGATCTTCAAT+TGG - chr3.3:75655656-75655675 None:intergenic 30.0%
TTCCCTTAACTTTGTTAGAT+TGG + chr3.3:75657453-75657472 MS.gene013666:intron 30.0%
TTCCTAGCTAGTAAATTTGA+TGG - chr3.3:75658325-75658344 None:intergenic 30.0%
! ACTACATGAAAGCAAGATTT+TGG - chr3.3:75656378-75656397 None:intergenic 30.0%
! ATTGGTTAATTTTCTAGGTC+CGG + chr3.3:75656212-75656231 MS.gene013666:intron 30.0%
! CAAATCTAATTTTGTACCTG+TGG - chr3.3:75656700-75656719 None:intergenic 30.0%
! GAAATTTGCTTTGTCTAATC+TGG - chr3.3:75656425-75656444 None:intergenic 30.0%
! TGTTATCATGAAGTTTTACC+GGG + chr3.3:75658039-75658058 MS.gene013666:intron 30.0%
!!! CTATATATTTGTGCCACTTT+TGG + chr3.3:75657354-75657373 MS.gene013666:intron 30.0%
AAATTAATGCATGTGTAGGC+TGG + chr3.3:75658887-75658906 MS.gene013666:intron 35.0%
AACACTACTAAACCCTCAAT+TGG + chr3.3:75659043-75659062 MS.gene013666:CDS 35.0%
AATAGATGTAATGCCCTAGA+AGG - chr3.3:75658992-75659011 None:intergenic 35.0%
AATTCAAAGTCCTGGAATAC+AGG + chr3.3:75656315-75656334 MS.gene013666:CDS 35.0%
AGGAAAAACTTGTGACAACA+TGG - chr3.3:75655875-75655894 None:intergenic 35.0%
AGTTTCCTTCATACAAATCG+AGG + chr3.3:75656887-75656906 MS.gene013666:CDS 35.0%
ATACGTTATGAGTAGTTGCA+TGG - chr3.3:75657602-75657621 None:intergenic 35.0%
ATATATTTACCTGCCCTTTG+TGG - chr3.3:75658778-75658797 None:intergenic 35.0%
ATCATGTGAATCGGATCTTA+CGG - chr3.3:75657311-75657330 None:intergenic 35.0%
ATGGATATGGCAGATTAGTA+CGG - chr3.3:75657975-75657994 None:intergenic 35.0%
ATTGAGGGTTTAGTAGTGTT+TGG - chr3.3:75659043-75659062 None:intergenic 35.0%
ATTTCTTGTTCAGCTATAGC+TGG - chr3.3:75657714-75657733 None:intergenic 35.0%
CATATACATACCTGTATTCC+AGG - chr3.3:75656328-75656347 None:intergenic 35.0%
GACAATAAAACCACCTGATT+TGG - chr3.3:75656000-75656019 None:intergenic 35.0%
GATTCAGTTGTTCCATTACT+AGG + chr3.3:75658680-75658699 MS.gene013666:CDS 35.0%
GGAATGATTTCGGATGAAAT+TGG + chr3.3:75657537-75657556 MS.gene013666:CDS 35.0%
GGCAGAACATAATAATCCAA+AGG - chr3.3:75657786-75657805 None:intergenic 35.0%
TAACAACAATTGGGGTAGAA+GGG + chr3.3:75655627-75655646 MS.gene013666:CDS 35.0%
TACGAAGAAATTCAAAGTCC+TGG + chr3.3:75656307-75656326 MS.gene013666:CDS 35.0%
TACGTTATGAGTAGTTGCAT+GGG - chr3.3:75657601-75657620 None:intergenic 35.0%
TACTAATCTGCCATATCCAT+GGG + chr3.3:75657975-75657994 MS.gene013666:CDS 35.0%
TGAACTATCCGTTTGAGAAT+TGG - chr3.3:75658529-75658548 None:intergenic 35.0%
! AACTTCCTCGATTTGTATGA+AGG - chr3.3:75656895-75656914 None:intergenic 35.0%
! AAGATGGTAACTTTTGCCTT+TGG + chr3.3:75657744-75657763 MS.gene013666:intron 35.0%
! AATTTTCCTAGCGGCATTTT+TGG - chr3.3:75657643-75657662 None:intergenic 35.0%
! ATAGAGTTTGGTTCCACAAA+GGG + chr3.3:75658762-75658781 MS.gene013666:CDS 35.0%
! ATCTAATTTTGTACCTGTGG+AGG - chr3.3:75656697-75656716 None:intergenic 35.0%
! ATTGGAAGCATATTAGCGTA+AGG - chr3.3:75658511-75658530 None:intergenic 35.0%
! GACTGAATTTAACTTTGGGT+TGG - chr3.3:75655688-75655707 None:intergenic 35.0%
! GTAATGGAACAACTGAATCT+TGG - chr3.3:75658679-75658698 None:intergenic 35.0%
! TATAGAGTTTGGTTCCACAA+AGG + chr3.3:75658761-75658780 MS.gene013666:CDS 35.0%
! TTGGTTAATTTTCTAGGTCC+GGG + chr3.3:75656213-75656232 MS.gene013666:intron 35.0%
!! AAGCAAGATTTTGGTGAAGA+CGG - chr3.3:75656369-75656388 None:intergenic 35.0%
!! AGCTTGTTGGTAACAACAAT+TGG + chr3.3:75655617-75655636 MS.gene013666:CDS 35.0%
!! ATGAAATTGGTCTTGCCATT+AGG + chr3.3:75657550-75657569 MS.gene013666:CDS 35.0%
!! CTTGTTGGTAACAACAATTG+GGG + chr3.3:75655619-75655638 MS.gene013666:CDS 35.0%
!! GCTTGTTGGTAACAACAATT+GGG + chr3.3:75655618-75655637 MS.gene013666:CDS 35.0%
!! TAAAACCACCTGATTTGGTT+AGG - chr3.3:75655995-75656014 None:intergenic 35.0%
!! TACATGAGCTGCTATTTCTT+CGG - chr3.3:75658446-75658465 None:intergenic 35.0%
ACTAATCTGCCATATCCATG+GGG + chr3.3:75657976-75657995 MS.gene013666:CDS 40.0%
AGTCGATCACAAGTGATCAT+AGG - chr3.3:75657176-75657195 None:intergenic 40.0%
AGTGTTCGAGAACCTAGTAA+TGG - chr3.3:75658695-75658714 None:intergenic 40.0%
AGTTTCCAATCTCCTCTTTG+TGG + chr3.3:75656608-75656627 MS.gene013666:intron 40.0%
ATACACGATCAGTCCAAAAG+TGG - chr3.3:75657370-75657389 None:intergenic 40.0%
ATATGGCAGATTAGTACGGT+TGG - chr3.3:75657971-75657990 None:intergenic 40.0%
ATTACCTCCATTGAGCCATA+GGG - chr3.3:75655807-75655826 None:intergenic 40.0%
CAATCTCTTTCCATGCACAA+AGG - chr3.3:75659020-75659039 None:intergenic 40.0%
CACGTATTTAGTCACAACGT+CGG - chr3.3:75656516-75656535 None:intergenic 40.0%
CCATCACCAGAAGGATAAAA+TGG - chr3.3:75656279-75656298 None:intergenic 40.0%
GTAACAACAATTGGGGTAGA+AGG + chr3.3:75655626-75655645 MS.gene013666:CDS 40.0%
GTACTAATCTGCCATATCCA+TGG + chr3.3:75657974-75657993 MS.gene013666:CDS 40.0%
TATTACCTCCATTGAGCCAT+AGG - chr3.3:75655808-75655827 None:intergenic 40.0%
TCAGCCAGAAATGATGACAT+AGG - chr3.3:75657095-75657114 None:intergenic 40.0%
! CACGATCCATTTTCAGAAGT+GGG - chr3.3:75657482-75657501 None:intergenic 40.0%
! CAGGAACAAAAGCATGTCAT+TGG - chr3.3:75656851-75656870 None:intergenic 40.0%
! CCATTTTATCCTTCTGGTGA+TGG + chr3.3:75656276-75656295 MS.gene013666:CDS 40.0%
! GTCTACAAGGTACTATTACC+CGG - chr3.3:75658060-75658079 None:intergenic 40.0%
! TCACGATCCATTTTCAGAAG+TGG - chr3.3:75657483-75657502 None:intergenic 40.0%
! TGCTTTTGTTCCTGCTGAAA+TGG + chr3.3:75656857-75656876 MS.gene013666:CDS 40.0%
! TGGAAACCCACTTCTGAAAA+TGG + chr3.3:75657473-75657492 MS.gene013666:CDS 40.0%
! TTGGGTCCATTTTATCCTTC+TGG + chr3.3:75656270-75656289 MS.gene013666:CDS 40.0%
!! AATTTAACTTTGGGTTGGCC+TGG - chr3.3:75655683-75655702 None:intergenic 40.0%
!! AGAATGGCATTGGCTAATTG+AGG - chr3.3:75657238-75657257 None:intergenic 40.0%
!! ATGGGAAAGTGTTGGTTTGT+TGG + chr3.3:75655569-75655588 MS.gene013666:CDS 40.0%
!! GTTTGTTGGAGTGTTGTTTG+TGG + chr3.3:75655583-75655602 MS.gene013666:CDS 40.0%
!! TCGAGGAAGTTGTTTCTTAC+CGG + chr3.3:75656904-75656923 MS.gene013666:CDS 40.0%
!!! AGGAGGTGCTTTTACTGAAT+TGG + chr3.3:75656251-75656270 MS.gene013666:CDS 40.0%
!!! GGAGGTGCTTTTACTGAATT+GGG + chr3.3:75656252-75656271 MS.gene013666:CDS 40.0%
ACAAAAAGCCTCTCACCCTA+TGG + chr3.3:75655789-75655808 MS.gene013666:CDS 45.0%
ACTTCTCGTACCATTTCAGC+AGG - chr3.3:75656870-75656889 None:intergenic 45.0%
AGACTCCACAAAGAGGAGAT+TGG - chr3.3:75656616-75656635 None:intergenic 45.0%
CTACTCCTAACCAAATCAGG+TGG + chr3.3:75655987-75656006 MS.gene013666:intron 45.0%
CTATTCAGCTCCTTTGTGCA+TGG + chr3.3:75659007-75659026 MS.gene013666:CDS 45.0%
CTGGTCACACGGAATGATTT+CGG + chr3.3:75657527-75657546 MS.gene013666:CDS 45.0%
GATCTAGTTGTGAAGTTGCC+AGG + chr3.3:75655662-75655681 MS.gene013666:CDS 45.0%
GCCATATGGACAACCTTCTA+GGG + chr3.3:75658976-75658995 MS.gene013666:CDS 45.0%
GTCCTACTCCTAACCAAATC+AGG + chr3.3:75655984-75656003 MS.gene013666:intron 45.0%
TAATTACCTCAACCTGCCTG+AGG + chr3.3:75657927-75657946 MS.gene013666:CDS 45.0%
TGCCATATGGACAACCTTCT+AGG + chr3.3:75658975-75658994 MS.gene013666:CDS 45.0%
TTAATGCATGTGTAGGCTGG+AGG + chr3.3:75658890-75658909 MS.gene013666:intron 45.0%
TTGACTTTCGCCACTGTAAG+AGG + chr3.3:75658938-75658957 MS.gene013666:CDS 45.0%
! CTCGCTCACAATTTTCCTAG+CGG - chr3.3:75657652-75657671 None:intergenic 45.0%
!! CACCTGATTTGGTTAGGAGT+AGG - chr3.3:75655989-75656008 None:intergenic 45.0%
!! GTGTTGTTTGTGGTGGCATA+TGG + chr3.3:75655593-75655612 MS.gene013666:CDS 45.0%
!! TGTTGGAGTGTTGTTTGTGG+TGG + chr3.3:75655586-75655605 MS.gene013666:CDS 45.0%
!! AAAAAAATAAAAAATATCAT+TGG - chr3.3:75657807-75657826 None:intergenic 5.0%
!!! ATAATTTTTTAATTTGTTTT+TGG + chr3.3:75656822-75656841 MS.gene013666:intron 5.0%
!!! TAATAATAATAATTTTATGA+TGG + chr3.3:75655823-75655842 MS.gene013666:intron 5.0%
!!! TTATTTATTTTATACATTTT+TGG + chr3.3:75658610-75658629 MS.gene013666:intron 5.0%
ACGAAGCCAAAAATGCCGCT+AGG + chr3.3:75657634-75657653 MS.gene013666:CDS 50.0%
CTACACATGCCCCATGGATA+TGG - chr3.3:75657988-75658007 None:intergenic 50.0%
CTTACCGGAGAAAGCTATGC+AGG + chr3.3:75656919-75656938 MS.gene013666:CDS 50.0%
GCAGATTAGTACGGTTGGCA+TGG - chr3.3:75657966-75657985 None:intergenic 50.0%
GCCCTAGAAGGTTGTCCATA+TGG - chr3.3:75658980-75658999 None:intergenic 50.0%
GGAGGTTGGGTAACTGAGTA+TGG + chr3.3:75658908-75658927 MS.gene013666:CDS 50.0%
GGTGGCATATGGAAGCTTGT+TGG + chr3.3:75655604-75655623 MS.gene013666:CDS 50.0%
GTATGACCAACCAACTCCAG+CGG - chr3.3:75656640-75656659 None:intergenic 50.0%
TACTCACTACACATGCCCCA+TGG - chr3.3:75657994-75658013 None:intergenic 50.0%
TATGACCAACCAACTCCAGC+GGG - chr3.3:75656639-75656658 None:intergenic 50.0%
TGGACCTGCATAGCTTTCTC+CGG - chr3.3:75656926-75656945 None:intergenic 50.0%
TTTCGCCACTGTAAGAGGAG+CGG + chr3.3:75658943-75658962 MS.gene013666:CDS 50.0%
! AGGGTGAGAGGCTTTTTGTG+AGG - chr3.3:75655788-75655807 None:intergenic 50.0%
! AGTTTGGTTCCACAAAGGGC+AGG + chr3.3:75658766-75658785 MS.gene013666:CDS 50.0%
! GGGTGAGAGGCTTTTTGTGA+GGG - chr3.3:75655787-75655806 None:intergenic 50.0%
! TGAGAGGCTTTTTGTGAGGG+AGG - chr3.3:75655784-75655803 None:intergenic 50.0%
!! AAAAGCACCTCCTCCGATAG+AGG - chr3.3:75656244-75656263 None:intergenic 50.0%
!! TATCCTTCTGGTGATGGACG+CGG + chr3.3:75656282-75656301 MS.gene013666:CDS 50.0%
CAACCTGCCTGAGGTTCAGA+AGG + chr3.3:75657936-75657955 MS.gene013666:CDS 55.0%
CCATTGAGCCATAGGGTGAG+AGG - chr3.3:75655800-75655819 None:intergenic 55.0%
CCTCCGATAGAGGAACATCC+CGG - chr3.3:75656234-75656253 None:intergenic 55.0%
CCTCTCACCCTATGGCTCAA+TGG + chr3.3:75655797-75655816 MS.gene013666:CDS 55.0%
CTCACCCTATGGCTCAATGG+AGG + chr3.3:75655800-75655819 MS.gene013666:CDS 55.0%
GCATGTGTAGGCTGGAGGTT+GGG + chr3.3:75658895-75658914 MS.gene013666:intron 55.0%
GGATGTTCCTCTATCGGAGG+AGG + chr3.3:75656234-75656253 MS.gene013666:CDS 55.0%
GGTCCGGGATGTTCCTCTAT+CGG + chr3.3:75656228-75656247 MS.gene013666:intron 55.0%
TCTGAACCTCAGGCAGGTTG+AGG - chr3.3:75657936-75657955 None:intergenic 55.0%
TGCATGTGTAGGCTGGAGGT+TGG + chr3.3:75658894-75658913 MS.gene013666:intron 55.0%
TGGAGAGCCTTCTGAACCTC+AGG - chr3.3:75657946-75657965 None:intergenic 55.0%
TGTAAGAGGAGCGGGTCACA+TGG + chr3.3:75658952-75658971 MS.gene013666:CDS 55.0%
TTCGCCACTGTAAGAGGAGC+GGG + chr3.3:75658944-75658963 MS.gene013666:CDS 55.0%
! GAGGCTTTTTGTGAGGGAGG+TGG - chr3.3:75655781-75655800 None:intergenic 55.0%
!! AACATTGGTGACGCCTCCAC+AGG + chr3.3:75656681-75656700 MS.gene013666:CDS 55.0%
AGACCGCGTCCATCACCAGA+AGG - chr3.3:75656288-75656307 None:intergenic 60.0%
CAGCGGGAGACTCCACAAAG+AGG - chr3.3:75656623-75656642 None:intergenic 60.0%
CCGGGATGTTCCTCTATCGG+AGG + chr3.3:75656231-75656250 MS.gene013666:CDS 60.0%
CTCTTTGTGGAGTCTCCCGC+TGG + chr3.3:75656621-75656640 MS.gene013666:CDS 60.0%
GAGCCTTCTGAACCTCAGGC+AGG - chr3.3:75657942-75657961 None:intergenic 60.0%
GTGACCCGCTCCTCTTACAG+TGG - chr3.3:75658951-75658970 None:intergenic 60.0%
! AGTCTCCCGCTGGAGTTGGT+TGG + chr3.3:75656631-75656650 MS.gene013666:CDS 60.0%
!! GCGGGTCACATGGTGCCATA+TGG + chr3.3:75658962-75658981 MS.gene013666:CDS 60.0%
GTGGAGTCTCCCGCTGGAGT+TGG + chr3.3:75656627-75656646 MS.gene013666:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 75655569 75659072 75655569 ID=MS.gene013666
chr3.3 mRNA 75655569 75659072 75655569 ID=MS.gene013666.t1;Parent=MS.gene013666
chr3.3 exon 75655569 75655821 75655569 ID=MS.gene013666.t1.exon1;Parent=MS.gene013666.t1
chr3.3 CDS 75655569 75655821 75655569 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75656229 75656336 75656229 ID=MS.gene013666.t1.exon2;Parent=MS.gene013666.t1
chr3.3 CDS 75656229 75656336 75656229 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75656610 75656702 75656610 ID=MS.gene013666.t1.exon3;Parent=MS.gene013666.t1
chr3.3 CDS 75656610 75656702 75656610 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75656848 75656940 75656848 ID=MS.gene013666.t1.exon4;Parent=MS.gene013666.t1
chr3.3 CDS 75656848 75656940 75656848 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75657224 75657309 75657224 ID=MS.gene013666.t1.exon5;Parent=MS.gene013666.t1
chr3.3 CDS 75657224 75657309 75657224 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75657471 75657749 75657471 ID=MS.gene013666.t1.exon6;Parent=MS.gene013666.t1
chr3.3 CDS 75657471 75657749 75657471 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75657877 75658010 75657877 ID=MS.gene013666.t1.exon7;Parent=MS.gene013666.t1
chr3.3 CDS 75657877 75658010 75657877 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75658483 75658575 75658483 ID=MS.gene013666.t1.exon8;Parent=MS.gene013666.t1
chr3.3 CDS 75658483 75658575 75658483 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75658670 75658787 75658670 ID=MS.gene013666.t1.exon9;Parent=MS.gene013666.t1
chr3.3 CDS 75658670 75658787 75658670 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
chr3.3 exon 75658905 75659072 75658905 ID=MS.gene013666.t1.exon10;Parent=MS.gene013666.t1
chr3.3 CDS 75658905 75659072 75658905 ID=cds.MS.gene013666.t1;Parent=MS.gene013666.t1
Gene Sequence

>MS.gene013666

ATGGGAAAGTGTTGGTTTGTTGGAGTGTTGTTTGTGGTGGCATATGGAAGCTTGTTGGTAACAACAATTGGGGTAGAAGGGTACCCAATTGAAGATCTAGTTGTGAAGTTGCCAGGCCAACCCAAAGTTAAATTCAGTCAATATGCTGGTTATGTTGATATAGATATAAAACATGGGAGGAGTCTCTTCTATTATTTTGTTGAGGCTGACCACCTCCCTCACAAAAAGCCTCTCACCCTATGGCTCAATGGAGGTAATAATAATAATTTTATGATGGATGCATATCATTTTTACTCTTCATTACCATGTTGTCACAAGTTTTTCCTTTTATTTAATTTCGTATGTTGATAGTATAGGTTGATGTCATTTATTTGTTCTTGTATTATTGTACTGTGTTATGTGCTTGTGTTGTATTGTCCTACTCCTAACCAAATCAGGTGGTTTTATTGTCTTTGCTAGTAGAAAATCTTACCAGCTTAACAAAATTATATCATGTATATCAAAATTGATGAATTATTTTAGCTCCTTTTTCTTTATTTTAAGATGTAGATATTTGTTAATTTTTTATAACGCCAACATCAAATTCAAATCATCTTACAAGGATCATAAATAAATTGTTCTTTATTGGAGGGGAATTAATTAAATTGGTTAATTTTCTAGGTCCGGGATGTTCCTCTATCGGAGGAGGTGCTTTTACTGAATTGGGTCCATTTTATCCTTCTGGTGATGGACGCGGTCTACGAAGAAATTCAAAGTCCTGGAATACAGGTATGTATATGACTATGAATTTGAATTCACCGTCTTCACCAAAATCTTGCTTTCATGTAGTCATTATATCTGTGAGTTTTAAGATCCAGATTAGACAAAGCAAATTTCAAGATCAAGCTTTTAGTTTTAAAAAATCTTTTTGATATGAGCACAATATGATCTCGATCTAATGATCACCGACGTTGTGACTAAATACGTGTTTTGATATTTGAGAATTATGTGGGTGTATTAATTCCTGACTTATATATTGTTCATGTCTACTCTTTTTTATAGTTTCCAATCTCCTCTTTGTGGAGTCTCCCGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCTGATTATAACATTGGTGACGCCTCCACAGGTACAAAATTAGATTTGTGAGACCAAATTTATGTAGTCAATATCTATACAAAAGAATAAAAAAAAATATTTTTTGTATGTTATACATGGAATTTGTTAGTTTTATTATTAGGCATGAACATAATTTTTTAATTTGTTTTTGGCAGCCAATGACATGCTTTTGTTCCTGCTGAAATGGTACGAGAAGTTTCCTTCATACAAATCGAGGAAGTTGTTTCTTACCGGAGAAAGCTATGCAGGTCCAACAAACACAATAATCAAATTCCAAATTTAATAATTTATCGTTTCAAAATTCCAAAAATTAAATTTAGTGTCGTGGTATAAAATATTCAATTTAGCAGAGAGGATTCAGTTATATAAATTTTATATTCTTTATGCATGCACACAAAACCTATGTCATCATTTCTGGCTGAGACATACACATACACAAATGTTTAACACAAATATTTGTTCCTTAATTGTGTTCTTTTGCCTATGATCACTTGTGATCGACTTTTGTTTCTTACATACTAACATTTTCAGGACATTACATACCTCAATTAGCCAATGCCATTCTTGATTATAATGCTCATTCATCCAGTTTCAAGTTCAACATAAAAGGAGTTGCCGTAAGATCCGATTCACATGATATATTAAATTAATTCACTCACAACTATATATTTGTGCCACTTTTGGACTGATCGTGTATATTTGATGACTTATTGATTATTTAATTAAGAAATTTTGAAAGTTAATTAAACTGATCTTACTTTTCCCTTAACTTTGTTAGATTGGAAACCCACTTCTGAAAATGGATCGTGATACACAAGCAACATATGAATATTACTGGTCACACGGAATGATTTCGGATGAAATTGGTCTTGCCATTAGGAATGATTGTGATTTTGATGATCATACCCATGCAACTACTCATAACGTATCTAAATCATGCAACGAAGCCAAAAATGCCGCTAGGAAAATTGTGAGCGAGTATGTAGACAACTATGATGTGATTATTGATGTGTGTTATCCAGCTATAGCTGAACAAGAAATCAGATTGAAAAAGATGGTAACTTTTGCCTTTGGATTATTATAACTTTTGCCTTTGGATTATTATGTTCTGCCAATGATATTTTTTATTTTTTTATAATTAATTAATTAATTAATTAATTAATTTGTTTATTTCATTAATGCAGGCTACTAAAATAAGTTTAAGTGTCGATGTTTGTATAGATTATGAAAGCTTTAATTACCTCAACCTGCCTGAGGTTCAGAAGGCTCTCCATGCCAACCGTACTAATCTGCCATATCCATGGGGCATGTGTAGTGAGTAAGTATAAATAAAGCAAAAATATACTTGTTATCATGAAGTTTTACCGGGTAATAGTACCTTGTAGACAAAATTAATTTAACATTTAATTTTATTTTAAAATAATTATATATAAAAAATGACATAACTATAGATTGTATTATAAATAAATTAGAATACACACTTTGATATATAAATATTATTGGAAAAAGACAATTTCATAACTAGAGATATAATTGATATGAATGGAGTTTACAAATATAGGCAACATTCATTTTATTATAATATTGCTAAGTTAAGAATACACACTTTGTGAACTAAGTTAAGACTAACCATCAAATTTACTAGCTAGGAAACTAATATTGCTAATTTTTTTTTTTTTTTATAAATATATTTGAAATCTTGCCTCATATGATCATAGTAAACATGTCATTTTTGTTTTAATTTTGATTACCGAAGAAATAGCAGCTCATGTACATTTTCTTCATTGCAGTGTTTTGAATTACAGCAAGACAGATCCTTACGCTAATATGCTTCCAATTCTCAAACGGATAGTTCAAAATCATATTCCAATATGGGTTTATAGGTAGTTAATTTTAACAAATGATAATCATTTGCTATTATTTATTTTATACATTTTTGGAATAAGCCTTACCATACTTGTTAAATTATTATGATAGTGGAGACCAAGATTCAGTTGTTCCATTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCATGACCTGAAATTCAAGATTACAGACTCATATAGAGTTTGGTTCCACAAAGGGCAGGTAAATATATATTTTTATTAACAATTAACCTAATTTTTTTGCATATTGAAAATTGATTTGAGTATGGATTTCGCAATTTTATTAACTCATGTTTCTAAAAAATTAATGCATGTGTAGGCTGGAGGTTGGGTAACTGAGTATGGAAATTTGTTGACTTTCGCCACTGTAAGAGGAGCGGGTCACATGGTGCCATATGGACAACCTTCTAGGGCATTACATCTATTCAGCTCCTTTGTGCATGGAAAGAGATTGCCAAACACTACTAAACCCTCAATTGGAGAATGA
Protein sequence

>MS.gene013666.t1

MGKCWFVGVLFVVAYGSLLVTTIGVEGYPIEDLVVKLPGQPKVKFSQYAGYVDIDIKHGRSLFYYFVEADHLPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPSGDGRGLRRNSKSWNTVSNLLFVESPAGVGWSYSNTTSDYNIGDASTANDMLLFLLKWYEKFPSYKSRKLFLTGESYAGHYIPQLANAILDYNAHSSSFKFNIKGVAIGNPLLKMDRDTQATYEYYWSHGMISDEIGLAIRNDCDFDDHTHATTHNVSKSCNEAKNAARKIVSEYVDNYDVIIDVCYPAIAEQEIRLKKMATKISLSVDVCIDYESFNYLNLPEVQKALHANRTNLPYPWGMCSDVLNYSKTDPYANMLPILKRIVQNHIPIWVYSGDQDSVVPLLGSRTLIRELAHDLKFKITDSYRVWFHKGQAGGWVTEYGNLLTFATVRGAGHMVPYGQPSRALHLFSSFVHGKRLPNTTKPSIGE