Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014202.t1 | AEN94095.1 | 100 | 411 | 0 | 0 | 1 | 411 | 61 | 471 | 4.50E-237 | 830.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014202.t1 | P45621 | 92.9 | 411 | 29 | 0 | 1 | 411 | 56 | 466 | 2.3e-226 | 785.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014202.t1 | G4W9I6 | 100.0 | 411 | 0 | 0 | 1 | 411 | 61 | 471 | 3.3e-237 | 830.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014202 | MS.gene02808 | PPI |
| MS.gene051305 | MS.gene014202 | PPI |
| MS.gene014202 | MS.gene027933 | PPI |
| MS.gene014202 | MS.gene97720 | PPI |
| MS.gene027936 | MS.gene014202 | PPI |
| MS.gene014202 | MS.gene051306 | PPI |
| MS.gene014202 | MS.gene78935 | PPI |
| MS.gene014202 | MS.gene002503 | PPI |
| MS.gene23898 | MS.gene014202 | PPI |
| MS.gene01476 | MS.gene014202 | PPI |
| MS.gene014202 | MS.gene004173 | PPI |
| MS.gene97715 | MS.gene014202 | PPI |
| MS.gene051310 | MS.gene014202 | PPI |
| MS.gene027931 | MS.gene014202 | PPI |
| MS.gene047358 | MS.gene014202 | PPI |
| MS.gene027928 | MS.gene014202 | PPI |
| MS.gene014202 | MS.gene23896 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014202.t1 | MTR_3g118070 | 99.270 | 411 | 3 | 0 | 1 | 411 | 58 | 468 | 0.0 | 838 |
| MS.gene014202.t1 | MTR_3g118070 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 833 |
| MS.gene014202.t1 | MTR_7g451450 | 34.448 | 299 | 169 | 10 | 19 | 304 | 87 | 371 | 8.03e-34 | 132 |
| MS.gene014202.t1 | MTR_7g072420 | 27.946 | 297 | 197 | 8 | 19 | 303 | 83 | 374 | 6.31e-21 | 95.1 |
| MS.gene014202.t1 | MTR_3g465800 | 27.759 | 299 | 197 | 7 | 18 | 303 | 74 | 366 | 6.48e-19 | 89.0 |
| MS.gene014202.t1 | MTR_3g465800 | 28.179 | 291 | 190 | 7 | 26 | 303 | 11 | 295 | 8.58e-19 | 87.8 |
| MS.gene014202.t1 | MTR_8g091660 | 25.373 | 335 | 219 | 11 | 18 | 334 | 82 | 403 | 1.78e-17 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014202.t1 | AT3G48730 | 84.672 | 411 | 63 | 0 | 1 | 411 | 62 | 472 | 0.0 | 736 |
| MS.gene014202.t1 | AT5G63570 | 82.725 | 411 | 71 | 0 | 1 | 411 | 64 | 474 | 0.0 | 718 |
| MS.gene014202.t1 | AT5G63570 | 82.725 | 411 | 71 | 0 | 1 | 411 | 1 | 411 | 0.0 | 714 |
| MS.gene014202.t1 | AT5G46180 | 28.882 | 322 | 204 | 8 | 19 | 327 | 59 | 368 | 2.31e-30 | 122 |
| MS.gene014202.t1 | AT1G80600 | 29.773 | 309 | 170 | 10 | 19 | 304 | 77 | 361 | 6.22e-26 | 109 |
| MS.gene014202.t1 | AT3G08860 | 26.667 | 315 | 206 | 11 | 19 | 317 | 83 | 388 | 2.90e-20 | 92.8 |
| MS.gene014202.t1 | AT3G08860 | 26.667 | 315 | 206 | 11 | 19 | 317 | 83 | 388 | 3.29e-20 | 92.8 |
| MS.gene014202.t1 | AT4G39660 | 25.519 | 337 | 216 | 11 | 18 | 334 | 77 | 398 | 9.39e-20 | 91.7 |
| MS.gene014202.t1 | AT4G39660 | 25.538 | 325 | 207 | 11 | 30 | 334 | 14 | 323 | 1.27e-19 | 90.5 |
| MS.gene014202.t1 | AT2G38400 | 25.444 | 338 | 214 | 10 | 18 | 334 | 79 | 399 | 1.73e-16 | 81.6 |
| MS.gene014202.t1 | AT2G38400 | 25.444 | 338 | 214 | 10 | 18 | 334 | 79 | 399 | 2.08e-16 | 81.3 |
Find 141 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGTTTGCTAAGTTCTTC+TGG | 0.125787 | 3.4:+100143520 | MS.gene014202:CDS |
| TCTTGGGGTCCTGCAATTAT+TGG | 0.214742 | 3.4:+100142483 | MS.gene014202:CDS |
| TTGACGGAATCAATGATAAT+TGG | 0.243448 | 3.4:-100142408 | None:intergenic |
| TGGAGGTAGGAGAGATATTA+TGG | 0.268158 | 3.4:+100143221 | MS.gene014202:CDS |
| CATTGACTATGTTGGTTCTT+GGG | 0.275476 | 3.4:+100142467 | MS.gene014202:CDS |
| GTTTCATTGGTGGCAGCTTT+AGG | 0.281598 | 3.4:-100142898 | None:intergenic |
| CTGCTGCTGAGAAGGTCTTT+AGG | 0.282740 | 3.4:+100143640 | MS.gene014202:CDS |
| TGCTGCTGAGAAGGTCTTTA+GGG | 0.286640 | 3.4:+100143641 | MS.gene014202:CDS |
| CTTGATGATCTTCTCTTTGC+CGG | 0.295779 | 3.4:-100142782 | None:intergenic |
| CGCAAGGAACTAAGAAAATC+AGG | 0.299535 | 3.4:-100143042 | None:intergenic |
| ATATGTGGTGGGCATATAAA+TGG | 0.309935 | 3.4:+100143429 | MS.gene014202:CDS |
| TTCCCCAGAGTTGTTATATC+AGG | 0.310573 | 3.4:-100143165 | None:intergenic |
| ACATTGACTATGTTGGTTCT+TGG | 0.314847 | 3.4:+100142466 | MS.gene014202:CDS |
| CAAGTTTGCTAAGTTCTTCT+GGG | 0.335783 | 3.4:+100143521 | MS.gene014202:CDS |
| AGAAACTCTGAAGCGTATTA+AGG | 0.338134 | 3.4:+100143320 | MS.gene014202:CDS |
| GAACCTGTTGTTGGAAATTC+CGG | 0.340485 | 3.4:+100143003 | MS.gene014202:CDS |
| GTTAGCAGAAGGTGTCTATT+TGG | 0.340874 | 3.4:+100143548 | MS.gene014202:CDS |
| GAATACTTGGACAAAATTAC+AGG | 0.342820 | 3.4:+100143357 | MS.gene014202:CDS |
| ATGGTCAGATTTGTCAATTC+CGG | 0.345817 | 3.4:+100142715 | MS.gene014202:CDS |
| GGCATATAAATGGGATGTTT+GGG | 0.350134 | 3.4:+100143439 | MS.gene014202:CDS |
| GGGCATATAAATGGGATGTT+TGG | 0.352503 | 3.4:+100143438 | MS.gene014202:CDS |
| GCACCTTCACAGTTTGAGGC+TGG | 0.354758 | 3.4:+100143570 | MS.gene014202:CDS |
| TCCAAGTATTCATAAGTTCC+TGG | 0.359322 | 3.4:-100143345 | None:intergenic |
| TTAGGAACACCAGGGGAATC+AGG | 0.388149 | 3.4:-100142880 | None:intergenic |
| TTTGGCACCTTCACAGTTTG+AGG | 0.388856 | 3.4:+100143566 | MS.gene014202:CDS |
| GGCTGTAAGGGTTTCATTGG+TGG | 0.391375 | 3.4:-100142908 | None:intergenic |
| GAACTAAGAAAATCAGGTTT+AGG | 0.397600 | 3.4:-100143036 | None:intergenic |
| TACGGCTATCTCTCCTTTGT+TGG | 0.403214 | 3.4:-100142971 | None:intergenic |
| TATTGGTCACGCTGATGATC+AGG | 0.409676 | 3.4:+100142500 | MS.gene014202:CDS |
| TGCTGTTCCCAGCATTGAAA+TGG | 0.417543 | 3.4:+100142696 | MS.gene014202:CDS |
| CCAGAAGAACTTAGCAAACT+TGG | 0.420091 | 3.4:-100143520 | None:intergenic |
| TTTCTTGTTAAGGCAGGTAG+TGG | 0.428022 | 3.4:+100142838 | MS.gene014202:CDS |
| ATGAAGAAAGGAACCAGCTT+TGG | 0.429438 | 3.4:+100142628 | MS.gene014202:CDS |
| GACGTTGAGTGGGAATCCTT+TGG | 0.430505 | 3.4:+100143281 | MS.gene014202:CDS |
| GTCTTCCTCGAACCTGTTGT+TGG | 0.431603 | 3.4:+100142994 | MS.gene014202:CDS |
| CACCTTCACAGTTTGAGGCT+GGG | 0.433643 | 3.4:+100143571 | MS.gene014202:CDS |
| CTACCTGCCTTAACAAGAAA+AGG | 0.436782 | 3.4:-100142835 | None:intergenic |
| GGTTTGCCAGTAGGTGCATA+TGG | 0.445263 | 3.4:+100143201 | MS.gene014202:CDS |
| AAACCGGAATTTCCAACAAC+AGG | 0.445497 | 3.4:-100143006 | None:intergenic |
| ACAACTCTGGGGAAGATCAT+TGG | 0.450763 | 3.4:+100143174 | MS.gene014202:CDS |
| CCACATGCGAGCACCTTTGA+CGG | 0.452870 | 3.4:-100142424 | None:intergenic |
| ACTGGATTCCGTTTGTCGTA+TGG | 0.457113 | 3.4:+100143114 | MS.gene014202:CDS |
| TCAGCGTGACCAATAATTGC+AGG | 0.459493 | 3.4:-100142492 | None:intergenic |
| ATTGACTATGTTGGTTCTTG+GGG | 0.459541 | 3.4:+100142468 | MS.gene014202:CDS |
| TGAGGCTGGGTTCACCAGCT+TGG | 0.460390 | 3.4:+100143584 | MS.gene014202:CDS |
| AAATCTGACCATTTCAATGC+TGG | 0.463786 | 3.4:-100142704 | None:intergenic |
| CGCCTTGCCCGTGCTTATAC+CGG | 0.463976 | 3.4:+100142763 | MS.gene014202:CDS |
| AACTCCTGATATAACAACTC+TGG | 0.465327 | 3.4:+100143161 | MS.gene014202:CDS |
| CAGGGGAATCAGGAAGTCCT+AGG | 0.466845 | 3.4:-100142870 | None:intergenic |
| TTTGATTAGGAATTGATGCC+TGG | 0.467656 | 3.4:+100142339 | None:intergenic |
| ACTCCTGATATAACAACTCT+GGG | 0.468947 | 3.4:+100143162 | MS.gene014202:CDS |
| ATTATCATTGATTCCGTCAA+AGG | 0.468966 | 3.4:+100142411 | MS.gene014202:CDS |
| ATGGAGACCGTGGCTCCGGC+TGG | 0.468994 | 3.4:+100143240 | MS.gene014202:CDS |
| AGAGAAGATCATCAAGTTTG+AGG | 0.471292 | 3.4:+100142789 | MS.gene014202:CDS |
| ATTACAGGTGAGCTTGTTCA+AGG | 0.477356 | 3.4:+100143372 | MS.gene014202:CDS |
| AAGACAAGGTGCACCAAAGC+TGG | 0.477394 | 3.4:-100142641 | None:intergenic |
| GAGAAGATCATCAAGTTTGA+GGG | 0.481387 | 3.4:+100142790 | MS.gene014202:CDS |
| GACCATTGCTGCTGCTGAGA+AGG | 0.485730 | 3.4:+100143632 | MS.gene014202:CDS |
| CTCTTTGCCGGTATAAGCAC+GGG | 0.486208 | 3.4:-100142770 | None:intergenic |
| GTTCAAGGCATTGTTGAAGC+TGG | 0.489925 | 3.4:+100143387 | MS.gene014202:CDS |
| AACCAACATAGTCAATGTAT+TGG | 0.491453 | 3.4:-100142461 | None:intergenic |
| ACTGATTTGAAAGCACGAAC+AGG | 0.495762 | 3.4:-100142375 | None:intergenic |
| GTGTTTGATGAAGTTATGAC+TGG | 0.497336 | 3.4:+100143096 | MS.gene014202:CDS |
| GCCAGGAACTTATGAATACT+TGG | 0.499909 | 3.4:+100143344 | MS.gene014202:CDS |
| GCTGGACCTATGTACCAGGC+TGG | 0.502027 | 3.4:+100143258 | MS.gene014202:CDS |
| AACAGCAGCAAAGTCATTGA+AGG | 0.503512 | 3.4:-100142932 | None:intergenic |
| AATCCTTTGGCAATGACTGC+AGG | 0.505080 | 3.4:+100143294 | MS.gene014202:CDS |
| TTCCGGCACAGAAGCATGCA+TGG | 0.507223 | 3.4:+100142732 | MS.gene014202:CDS |
| GTTCGTGCTTTCAAATCAGT+TGG | 0.507920 | 3.4:+100142378 | MS.gene014202:CDS |
| GAGCACCTCCATACGACAAA+CGG | 0.508625 | 3.4:-100143122 | None:intergenic |
| GTTGAAGCTGGTAAGAAGGC+AGG | 0.509704 | 3.4:+100143399 | MS.gene014202:CDS |
| AACCAATACATTGACTATGT+TGG | 0.510475 | 3.4:+100142459 | MS.gene014202:CDS |
| ACAGGAGAGTTCACACCTCC+AGG | 0.510938 | 3.4:-100142357 | None:intergenic |
| TATTATGGAGACCGTGGCTC+CGG | 0.513114 | 3.4:+100143236 | MS.gene014202:CDS |
| AACGTCCCAGCCTGGTACAT+AGG | 0.518158 | 3.4:-100143264 | None:intergenic |
| GCCTGGTACATAGGTCCAGC+CGG | 0.518203 | 3.4:-100143255 | None:intergenic |
| TTCTGGGGTATGTTAGCAGA+AGG | 0.519712 | 3.4:+100143537 | MS.gene014202:CDS |
| GACCTTCTCAGCAGCAGCAA+TGG | 0.522852 | 3.4:-100143634 | None:intergenic |
| CTAGGACTTCCTGATTCCCC+TGG | 0.524552 | 3.4:+100142871 | MS.gene014202:CDS |
| TGAAAACACTCTAGCTGAGA+TGG | 0.530589 | 3.4:+100142666 | MS.gene014202:CDS |
| CTACCTCCATATGCACCTAC+TGG | 0.530999 | 3.4:-100143207 | None:intergenic |
| CGTGCTTTCAAATCAGTTGG+TGG | 0.531486 | 3.4:+100142381 | MS.gene014202:CDS |
| CCGTCAAAGGTGCTCGCATG+TGG | 0.532480 | 3.4:+100142424 | MS.gene014202:CDS |
| TACCAGGCTGGGACGTTGAG+TGG | 0.532692 | 3.4:+100143270 | MS.gene014202:CDS |
| GAGAAGGGCATTGTTCTCCT+TGG | 0.539822 | 3.4:-100143073 | None:intergenic |
| CATTGTTGAAGCTGGTAAGA+AGG | 0.540418 | 3.4:+100143395 | MS.gene014202:CDS |
| AGGTTTAGGAGTAATGAAAC+CGG | 0.540434 | 3.4:-100143022 | None:intergenic |
| GGAGGTGCTCAACAATACTT+TGG | 0.540803 | 3.4:+100143135 | MS.gene014202:CDS |
| CTGAAGCGTATTAAGGAGCC+AGG | 0.542721 | 3.4:+100143327 | MS.gene014202:CDS |
| CTGGACCTATGTACCAGGCT+GGG | 0.542962 | 3.4:+100143259 | MS.gene014202:CDS |
| AATTTCCAACAACAGGTTCG+AGG | 0.544211 | 3.4:-100142999 | None:intergenic |
| TGCCGGTATAAGCACGGGCA+AGG | 0.545023 | 3.4:-100142765 | None:intergenic |
| ATCAGAAGTATGTGCCAAGC+TGG | 0.549286 | 3.4:-100143598 | None:intergenic |
| TCCGGCTGGACCTATGTACC+AGG | 0.550164 | 3.4:+100143254 | MS.gene014202:CDS |
| AATCTGACCATTTCAATGCT+GGG | 0.551104 | 3.4:-100142703 | None:intergenic |
| GCTCGCATGTGGGACATTGA+TGG | 0.552562 | 3.4:+100142435 | MS.gene014202:CDS |
| GGTAGTGGAGTTGCCACCCT+AGG | 0.552592 | 3.4:+100142853 | MS.gene014202:CDS |
| TCCCACTCAACGTCCCAGCC+TGG | 0.554590 | 3.4:-100143272 | None:intergenic |
| ACCCATGCATGCTTCTGTGC+CGG | 0.554652 | 3.4:-100142734 | None:intergenic |
| CTTGCTGAGACAATGAAGAA+AGG | 0.555611 | 3.4:+100142616 | MS.gene014202:CDS |
| TCTCTTTGCCGGTATAAGCA+CGG | 0.568722 | 3.4:-100142771 | None:intergenic |
| CATAGGTCCAGCCGGAGCCA+CGG | 0.570397 | 3.4:-100143247 | None:intergenic |
| GTGGCAGCTTTAGGAACACC+AGG | 0.571077 | 3.4:-100142889 | None:intergenic |
| ACAGCAGCAAAGTCATTGAA+GGG | 0.578728 | 3.4:-100142931 | None:intergenic |
| GCAGGGCATGCAATATGTGG+TGG | 0.581592 | 3.4:+100143417 | MS.gene014202:CDS |
| TATGTGGTGGGCATATAAAT+GGG | 0.582602 | 3.4:+100143430 | MS.gene014202:CDS |
| AAGTTTGCTAAGTTCTTCTG+GGG | 0.584115 | 3.4:+100143522 | MS.gene014202:CDS |
| TAACTTCATCAAACACGAGA+AGG | 0.585499 | 3.4:-100143089 | None:intergenic |
| TTGAAGCTGGTAAGAAGGCA+GGG | 0.585619 | 3.4:+100143400 | MS.gene014202:CDS |
| AGGGGAATCAGGAAGTCCTA+GGG | 0.587377 | 3.4:-100142869 | None:intergenic |
| GGATTCCGTTTGTCGTATGG+AGG | 0.588634 | 3.4:+100143117 | MS.gene014202:CDS |
| AAGTTTGAGGGATGTTATCA+CGG | 0.591307 | 3.4:+100142802 | MS.gene014202:CDS |
| AAGGCAGGGCATGCAATATG+TGG | 0.593656 | 3.4:+100143414 | MS.gene014202:CDS |
| CTTCATTGTCTCAGCAAGAG+CGG | 0.594962 | 3.4:-100142611 | None:intergenic |
| ATGCCTGCAGTCATTGCCAA+AGG | 0.596171 | 3.4:-100143297 | None:intergenic |
| ACTCTGGGGAAGATCATTGG+AGG | 0.600178 | 3.4:+100143177 | MS.gene014202:CDS |
| CAGTAGGTGCATATGGAGGT+AGG | 0.601307 | 3.4:+100143208 | MS.gene014202:CDS |
| CAGGGCATGCAATATGTGGT+GGG | 0.605835 | 3.4:+100143418 | MS.gene014202:CDS |
| ACCAGGCTGGGACGTTGAGT+GGG | 0.609650 | 3.4:+100143271 | MS.gene014202:CDS |
| CTGGGGAAGATCATTGGAGG+GGG | 0.612965 | 3.4:+100143180 | MS.gene014202:CDS |
| AACTTCATCAAACACGAGAA+GGG | 0.614126 | 3.4:-100143088 | None:intergenic |
| TCCGGCACAGAAGCATGCAT+GGG | 0.618306 | 3.4:+100142733 | MS.gene014202:CDS |
| AACAGGTTCGAGGAAGACTA+CGG | 0.621214 | 3.4:-100142989 | None:intergenic |
| CGTCAAAGGTGCTCGCATGT+GGG | 0.625959 | 3.4:+100142425 | MS.gene014202:CDS |
| AACCCAGCCTCAAACTGTGA+AGG | 0.634803 | 3.4:-100143573 | None:intergenic |
| AAGATCTTTGAAGCCAACAA+AGG | 0.638698 | 3.4:+100142958 | MS.gene014202:CDS |
| GCATCTGTGAAATTGTACAC+AGG | 0.641026 | 3.4:-100143480 | None:intergenic |
| GGAATCAGGAAGTCCTAGGG+TGG | 0.643441 | 3.4:-100142866 | None:intergenic |
| CGGTATAAGCACGGGCAAGG+CGG | 0.653099 | 3.4:-100142762 | None:intergenic |
| CAGCAGCAAAGTCATTGAAG+GGG | 0.654908 | 3.4:-100142930 | None:intergenic |
| GAGAGATATTATGGAGACCG+TGG | 0.661183 | 3.4:+100143230 | MS.gene014202:CDS |
| TCTGGGGAAGATCATTGGAG+GGG | 0.662523 | 3.4:+100143179 | MS.gene014202:CDS |
| AGCAGCAAAGTCATTGAAGG+GGG | 0.664856 | 3.4:-100142929 | None:intergenic |
| CTCTGGGGAAGATCATTGGA+GGG | 0.675119 | 3.4:+100143178 | MS.gene014202:CDS |
| TAACAAGAAAAGGATCAGCA+TGG | 0.678181 | 3.4:-100142825 | None:intergenic |
| TTCCTTGCGCAAAATCACCA+AGG | 0.686509 | 3.4:+100143056 | MS.gene014202:CDS |
| TTGCCAGTAGGTGCATATGG+AGG | 0.697062 | 3.4:+100143204 | MS.gene014202:CDS |
| GGCAGCTTTAGGAACACCAG+GGG | 0.703847 | 3.4:-100142887 | None:intergenic |
| TGGCAGCTTTAGGAACACCA+GGG | 0.708271 | 3.4:-100142888 | None:intergenic |
| GATTAGGAATTGATGCCTGG+AGG | 0.717601 | 3.4:+100142342 | None:intergenic |
| CTCCTGATATAACAACTCTG+GGG | 0.744293 | 3.4:+100143163 | MS.gene014202:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAACATAAAAGTTTGA+AGG | - | chr3.4:100142580-100142599 | None:intergenic | 15.0% |
| !!! | AAACTTTTATGTTTAATTTC+AGG | + | chr3.4:100142582-100142601 | MS.gene014202:intron | 15.0% |
| ! | AATATATGAGAGAATTGAAG+AGG | - | chr3.4:100142545-100142564 | None:intergenic | 25.0% |
| AACCAACATAGTCAATGTAT+TGG | - | chr3.4:100142464-100142483 | None:intergenic | 30.0% | |
| GAACTAAGAAAATCAGGTTT+AGG | - | chr3.4:100143039-100143058 | None:intergenic | 30.0% | |
| GAATACTTGGACAAAATTAC+AGG | + | chr3.4:100143357-100143376 | MS.gene014202:CDS | 30.0% | |
| TTGACGGAATCAATGATAAT+TGG | - | chr3.4:100142411-100142430 | None:intergenic | 30.0% | |
| ! | AACCAATACATTGACTATGT+TGG | + | chr3.4:100142459-100142478 | MS.gene014202:CDS | 30.0% |
| !! | ATTATCATTGATTCCGTCAA+AGG | + | chr3.4:100142411-100142430 | MS.gene014202:CDS | 30.0% |
| AAATCTGACCATTTCAATGC+TGG | - | chr3.4:100142707-100142726 | None:intergenic | 35.0% | |
| AACTCCTGATATAACAACTC+TGG | + | chr3.4:100143161-100143180 | MS.gene014202:CDS | 35.0% | |
| AACTTCATCAAACACGAGAA+GGG | - | chr3.4:100143091-100143110 | None:intergenic | 35.0% | |
| AAGTTTGAGGGATGTTATCA+CGG | + | chr3.4:100142802-100142821 | MS.gene014202:CDS | 35.0% | |
| AATCTGACCATTTCAATGCT+GGG | - | chr3.4:100142706-100142725 | None:intergenic | 35.0% | |
| ACTCCTGATATAACAACTCT+GGG | + | chr3.4:100143162-100143181 | MS.gene014202:CDS | 35.0% | |
| AGAGAAGATCATCAAGTTTG+AGG | + | chr3.4:100142789-100142808 | MS.gene014202:CDS | 35.0% | |
| AGGTTTAGGAGTAATGAAAC+CGG | - | chr3.4:100143025-100143044 | None:intergenic | 35.0% | |
| ATGGTCAGATTTGTCAATTC+CGG | + | chr3.4:100142715-100142734 | MS.gene014202:CDS | 35.0% | |
| GAGAAGATCATCAAGTTTGA+GGG | + | chr3.4:100142790-100142809 | MS.gene014202:CDS | 35.0% | |
| GGCATATAAATGGGATGTTT+GGG | + | chr3.4:100143439-100143458 | MS.gene014202:CDS | 35.0% | |
| GTGTTTGATGAAGTTATGAC+TGG | + | chr3.4:100143096-100143115 | MS.gene014202:CDS | 35.0% | |
| TAACAAGAAAAGGATCAGCA+TGG | - | chr3.4:100142828-100142847 | None:intergenic | 35.0% | |
| TAACTTCATCAAACACGAGA+AGG | - | chr3.4:100143092-100143111 | None:intergenic | 35.0% | |
| TCCAAGTATTCATAAGTTCC+TGG | - | chr3.4:100143348-100143367 | None:intergenic | 35.0% | |
| ! | TGCTGATCCTTTTCTTGTTA+AGG | + | chr3.4:100142828-100142847 | MS.gene014202:CDS | 35.0% |
| !! | AAGATCTTTGAAGCCAACAA+AGG | + | chr3.4:100142958-100142977 | MS.gene014202:CDS | 35.0% |
| !! | AAGTTTGCTAAGTTCTTCTG+GGG | + | chr3.4:100143522-100143541 | MS.gene014202:CDS | 35.0% |
| !! | ACATTGACTATGTTGGTTCT+TGG | + | chr3.4:100142466-100142485 | MS.gene014202:CDS | 35.0% |
| !! | AGAAACTCTGAAGCGTATTA+AGG | + | chr3.4:100143320-100143339 | MS.gene014202:CDS | 35.0% |
| !! | AGAGTGTTTTCAAGAAGACA+AGG | - | chr3.4:100142658-100142677 | None:intergenic | 35.0% |
| !! | ATATGTGGTGGGCATATAAA+TGG | + | chr3.4:100143429-100143448 | MS.gene014202:CDS | 35.0% |
| !! | ATTGACTATGTTGGTTCTTG+GGG | + | chr3.4:100142468-100142487 | MS.gene014202:CDS | 35.0% |
| !! | CAAGTTTGCTAAGTTCTTCT+GGG | + | chr3.4:100143521-100143540 | MS.gene014202:CDS | 35.0% |
| !! | CATTGACTATGTTGGTTCTT+GGG | + | chr3.4:100142467-100142486 | MS.gene014202:CDS | 35.0% |
| !! | TATGTGGTGGGCATATAAAT+GGG | + | chr3.4:100143430-100143449 | MS.gene014202:CDS | 35.0% |
| !! | TTTGGGTTTTTCTTCACAGA+AGG | + | chr3.4:100143456-100143475 | MS.gene014202:CDS | 35.0% |
| AAACCGGAATTTCCAACAAC+AGG | - | chr3.4:100143009-100143028 | None:intergenic | 40.0% | |
| AACAGCAGCAAAGTCATTGA+AGG | - | chr3.4:100142935-100142954 | None:intergenic | 40.0% | |
| AATTTCCAACAACAGGTTCG+AGG | - | chr3.4:100143002-100143021 | None:intergenic | 40.0% | |
| ACAGCAGCAAAGTCATTGAA+GGG | - | chr3.4:100142934-100142953 | None:intergenic | 40.0% | |
| ATGAAGAAAGGAACCAGCTT+TGG | + | chr3.4:100142628-100142647 | MS.gene014202:CDS | 40.0% | |
| CATTGTTGAAGCTGGTAAGA+AGG | + | chr3.4:100143395-100143414 | MS.gene014202:CDS | 40.0% | |
| CCAGAAGAACTTAGCAAACT+TGG | - | chr3.4:100143523-100143542 | None:intergenic | 40.0% | |
| CGCAAGGAACTAAGAAAATC+AGG | - | chr3.4:100143045-100143064 | None:intergenic | 40.0% | |
| CTACCTGCCTTAACAAGAAA+AGG | - | chr3.4:100142838-100142857 | None:intergenic | 40.0% | |
| CTCCTGATATAACAACTCTG+GGG | + | chr3.4:100143163-100143182 | MS.gene014202:CDS | 40.0% | |
| CTTGCTGAGACAATGAAGAA+AGG | + | chr3.4:100142616-100142635 | MS.gene014202:CDS | 40.0% | |
| GAACCTGTTGTTGGAAATTC+CGG | + | chr3.4:100143003-100143022 | MS.gene014202:CDS | 40.0% | |
| GCATCTGTGAAATTGTACAC+AGG | - | chr3.4:100143483-100143502 | None:intergenic | 40.0% | |
| GCCAGGAACTTATGAATACT+TGG | + | chr3.4:100143344-100143363 | MS.gene014202:CDS | 40.0% | |
| GGGCATATAAATGGGATGTT+TGG | + | chr3.4:100143438-100143457 | MS.gene014202:CDS | 40.0% | |
| GTTCGTGCTTTCAAATCAGT+TGG | + | chr3.4:100142378-100142397 | MS.gene014202:CDS | 40.0% | |
| TGAAAACACTCTAGCTGAGA+TGG | + | chr3.4:100142666-100142685 | MS.gene014202:CDS | 40.0% | |
| TGGAGGTAGGAGAGATATTA+TGG | + | chr3.4:100143221-100143240 | MS.gene014202:CDS | 40.0% | |
| TTCCCCAGAGTTGTTATATC+AGG | - | chr3.4:100143168-100143187 | None:intergenic | 40.0% | |
| TTTCTTGTTAAGGCAGGTAG+TGG | + | chr3.4:100142838-100142857 | MS.gene014202:CDS | 40.0% | |
| ! | ATTACAGGTGAGCTTGTTCA+AGG | + | chr3.4:100143372-100143391 | MS.gene014202:CDS | 40.0% |
| ! | CTTGATGATCTTCTCTTTGC+CGG | - | chr3.4:100142785-100142804 | None:intergenic | 40.0% |
| ! | GATCCTTTTCTTGTTAAGGC+AGG | + | chr3.4:100142832-100142851 | MS.gene014202:CDS | 40.0% |
| !! | ACTGATTTGAAAGCACGAAC+AGG | - | chr3.4:100142378-100142397 | None:intergenic | 40.0% |
| !! | CCAAGTTTGCTAAGTTCTTC+TGG | + | chr3.4:100143520-100143539 | MS.gene014202:CDS | 40.0% |
| !! | GTTAGCAGAAGGTGTCTATT+TGG | + | chr3.4:100143548-100143567 | MS.gene014202:CDS | 40.0% |
| AACAGGTTCGAGGAAGACTA+CGG | - | chr3.4:100142992-100143011 | None:intergenic | 45.0% | |
| AATCCTTTGGCAATGACTGC+AGG | + | chr3.4:100143294-100143313 | MS.gene014202:CDS | 45.0% | |
| ACTGGATTCCGTTTGTCGTA+TGG | + | chr3.4:100143114-100143133 | MS.gene014202:CDS | 45.0% | |
| AGCAGCAAAGTCATTGAAGG+GGG | - | chr3.4:100142932-100142951 | None:intergenic | 45.0% | |
| CAGCAGCAAAGTCATTGAAG+GGG | - | chr3.4:100142933-100142952 | None:intergenic | 45.0% | |
| CGTGCTTTCAAATCAGTTGG+TGG | + | chr3.4:100142381-100142400 | MS.gene014202:CDS | 45.0% | |
| CTTCATTGTCTCAGCAAGAG+CGG | - | chr3.4:100142614-100142633 | None:intergenic | 45.0% | |
| GAGAGATATTATGGAGACCG+TGG | + | chr3.4:100143230-100143249 | MS.gene014202:CDS | 45.0% | |
| TACGGCTATCTCTCCTTTGT+TGG | - | chr3.4:100142974-100142993 | None:intergenic | 45.0% | |
| TATTGGTCACGCTGATGATC+AGG | + | chr3.4:100142500-100142519 | MS.gene014202:CDS | 45.0% | |
| TCAGCGTGACCAATAATTGC+AGG | - | chr3.4:100142495-100142514 | None:intergenic | 45.0% | |
| TCTCTTTGCCGGTATAAGCA+CGG | - | chr3.4:100142774-100142793 | None:intergenic | 45.0% | |
| TCTTGGGGTCCTGCAATTAT+TGG | + | chr3.4:100142483-100142502 | MS.gene014202:CDS | 45.0% | |
| TGCTGCTGAGAAGGTCTTTA+GGG | + | chr3.4:100143641-100143660 | MS.gene014202:CDS | 45.0% | |
| TTCCTTGCGCAAAATCACCA+AGG | + | chr3.4:100143056-100143075 | MS.gene014202:CDS | 45.0% | |
| TTGAAGCTGGTAAGAAGGCA+GGG | + | chr3.4:100143400-100143419 | MS.gene014202:CDS | 45.0% | |
| TTTGGCACCTTCACAGTTTG+AGG | + | chr3.4:100143566-100143585 | MS.gene014202:CDS | 45.0% | |
| ! | ACAACTCTGGGGAAGATCAT+TGG | + | chr3.4:100143174-100143193 | MS.gene014202:CDS | 45.0% |
| ! | ATCAGAAGTATGTGCCAAGC+TGG | - | chr3.4:100143601-100143620 | None:intergenic | 45.0% |
| ! | GTTTCATTGGTGGCAGCTTT+AGG | - | chr3.4:100142901-100142920 | None:intergenic | 45.0% |
| ! | TGCTGTTCCCAGCATTGAAA+TGG | + | chr3.4:100142696-100142715 | MS.gene014202:CDS | 45.0% |
| !! | GGAGGTGCTCAACAATACTT+TGG | + | chr3.4:100143135-100143154 | MS.gene014202:CDS | 45.0% |
| !! | GTTCAAGGCATTGTTGAAGC+TGG | + | chr3.4:100143387-100143406 | MS.gene014202:CDS | 45.0% |
| !! | TTCTGGGGTATGTTAGCAGA+AGG | + | chr3.4:100143537-100143556 | MS.gene014202:CDS | 45.0% |
| AACCCAGCCTCAAACTGTGA+AGG | - | chr3.4:100143576-100143595 | None:intergenic | 50.0% | |
| AAGACAAGGTGCACCAAAGC+TGG | - | chr3.4:100142644-100142663 | None:intergenic | 50.0% | |
| AAGGCAGGGCATGCAATATG+TGG | + | chr3.4:100143414-100143433 | MS.gene014202:CDS | 50.0% | |
| AGGGGAATCAGGAAGTCCTA+GGG | - | chr3.4:100142872-100142891 | None:intergenic | 50.0% | |
| AGTCATTGAAGGGGGCTGTA+AGG | - | chr3.4:100142924-100142943 | None:intergenic | 50.0% | |
| ATGCCTGCAGTCATTGCCAA+AGG | - | chr3.4:100143300-100143319 | None:intergenic | 50.0% | |
| CAGGGCATGCAATATGTGGT+GGG | + | chr3.4:100143418-100143437 | MS.gene014202:CDS | 50.0% | |
| CAGTAGGTGCATATGGAGGT+AGG | + | chr3.4:100143208-100143227 | MS.gene014202:CDS | 50.0% | |
| CTACCTCCATATGCACCTAC+TGG | - | chr3.4:100143210-100143229 | None:intergenic | 50.0% | |
| CTCTTTGCCGGTATAAGCAC+GGG | - | chr3.4:100142773-100142792 | None:intergenic | 50.0% | |
| CTGAAGCGTATTAAGGAGCC+AGG | + | chr3.4:100143327-100143346 | MS.gene014202:CDS | 50.0% | |
| CTGCTGCTGAGAAGGTCTTT+AGG | + | chr3.4:100143640-100143659 | MS.gene014202:CDS | 50.0% | |
| GACGTTGAGTGGGAATCCTT+TGG | + | chr3.4:100143281-100143300 | MS.gene014202:CDS | 50.0% | |
| GAGCACCTCCATACGACAAA+CGG | - | chr3.4:100143125-100143144 | None:intergenic | 50.0% | |
| GGATTCCGTTTGTCGTATGG+AGG | + | chr3.4:100143117-100143136 | MS.gene014202:CDS | 50.0% | |
| GGCTGTAAGGGTTTCATTGG+TGG | - | chr3.4:100142911-100142930 | None:intergenic | 50.0% | |
| GGTTTGCCAGTAGGTGCATA+TGG | + | chr3.4:100143201-100143220 | MS.gene014202:CDS | 50.0% | |
| GTCATTGAAGGGGGCTGTAA+GGG | - | chr3.4:100142923-100142942 | None:intergenic | 50.0% | |
| GTCTTCCTCGAACCTGTTGT+TGG | + | chr3.4:100142994-100143013 | MS.gene014202:CDS | 50.0% | |
| GTTGAAGCTGGTAAGAAGGC+AGG | + | chr3.4:100143399-100143418 | MS.gene014202:CDS | 50.0% | |
| TATTATGGAGACCGTGGCTC+CGG | + | chr3.4:100143236-100143255 | MS.gene014202:CDS | 50.0% | |
| TCTGGGGAAGATCATTGGAG+GGG | + | chr3.4:100143179-100143198 | MS.gene014202:CDS | 50.0% | |
| TTAGGAACACCAGGGGAATC+AGG | - | chr3.4:100142883-100142902 | None:intergenic | 50.0% | |
| TTGCCAGTAGGTGCATATGG+AGG | + | chr3.4:100143204-100143223 | MS.gene014202:CDS | 50.0% | |
| ! | ACTCTGGGGAAGATCATTGG+AGG | + | chr3.4:100143177-100143196 | MS.gene014202:CDS | 50.0% |
| ! | CACCTTCACAGTTTGAGGCT+GGG | + | chr3.4:100143571-100143590 | MS.gene014202:CDS | 50.0% |
| ! | CTCTGGGGAAGATCATTGGA+GGG | + | chr3.4:100143178-100143197 | MS.gene014202:CDS | 50.0% |
| !! | CTCCTTGGTGATTTTGCGCA+AGG | - | chr3.4:100143061-100143080 | None:intergenic | 50.0% |
| !! | GAGAAGGGCATTGTTCTCCT+TGG | - | chr3.4:100143076-100143095 | None:intergenic | 50.0% |
| !! | TGGCAGCTTTAGGAACACCA+GGG | - | chr3.4:100142891-100142910 | None:intergenic | 50.0% |
| AACGTCCCAGCCTGGTACAT+AGG | - | chr3.4:100143267-100143286 | None:intergenic | 55.0% | |
| ACAGGAGAGTTCACACCTCC+AGG | - | chr3.4:100142360-100142379 | None:intergenic | 55.0% | |
| ACCCATGCATGCTTCTGTGC+CGG | - | chr3.4:100142737-100142756 | None:intergenic | 55.0% | |
| ATTGGAGGGGGTTTGCCAGT+AGG | + | chr3.4:100143192-100143211 | MS.gene014202:CDS | 55.0% | |
| CAGGGGAATCAGGAAGTCCT+AGG | - | chr3.4:100142873-100142892 | None:intergenic | 55.0% | |
| CCACATGCGAGCACCTTTGA+CGG | - | chr3.4:100142427-100142446 | None:intergenic | 55.0% | |
| CTAGGACTTCCTGATTCCCC+TGG | + | chr3.4:100142871-100142890 | MS.gene014202:CDS | 55.0% | |
| CTGGACCTATGTACCAGGCT+GGG | + | chr3.4:100143259-100143278 | MS.gene014202:CDS | 55.0% | |
| CTGGGGAAGATCATTGGAGG+GGG | + | chr3.4:100143180-100143199 | MS.gene014202:CDS | 55.0% | |
| GACCATTGCTGCTGCTGAGA+AGG | + | chr3.4:100143632-100143651 | MS.gene014202:CDS | 55.0% | |
| GACCTTCTCAGCAGCAGCAA+TGG | - | chr3.4:100143637-100143656 | None:intergenic | 55.0% | |
| GCAGGGCATGCAATATGTGG+TGG | + | chr3.4:100143417-100143436 | MS.gene014202:CDS | 55.0% | |
| GCTCGCATGTGGGACATTGA+TGG | + | chr3.4:100142435-100142454 | MS.gene014202:CDS | 55.0% | |
| GGAATCAGGAAGTCCTAGGG+TGG | - | chr3.4:100142869-100142888 | None:intergenic | 55.0% | |
| GGGGGCTGTAAGGGTTTCAT+TGG | - | chr3.4:100142914-100142933 | None:intergenic | 55.0% | |
| ! | GCACCTTCACAGTTTGAGGC+TGG | + | chr3.4:100143570-100143589 | MS.gene014202:CDS | 55.0% |
| ! | TCCGGCACAGAAGCATGCAT+GGG | + | chr3.4:100142733-100142752 | MS.gene014202:CDS | 55.0% |
| ! | TTCCGGCACAGAAGCATGCA+TGG | + | chr3.4:100142732-100142751 | MS.gene014202:CDS | 55.0% |
| !! | CGTCAAAGGTGCTCGCATGT+GGG | + | chr3.4:100142425-100142444 | MS.gene014202:CDS | 55.0% |
| !! | GGCAGCTTTAGGAACACCAG+GGG | - | chr3.4:100142890-100142909 | None:intergenic | 55.0% |
| !! | GTGGCAGCTTTAGGAACACC+AGG | - | chr3.4:100142892-100142911 | None:intergenic | 55.0% |
| ACCAGGCTGGGACGTTGAGT+GGG | + | chr3.4:100143271-100143290 | MS.gene014202:CDS | 60.0% | |
| CGCCTTGCCCGTGCTTATAC+CGG | + | chr3.4:100142763-100142782 | MS.gene014202:CDS | 60.0% | |
| CGGTATAAGCACGGGCAAGG+CGG | - | chr3.4:100142765-100142784 | None:intergenic | 60.0% | |
| GCCTGGTACATAGGTCCAGC+CGG | - | chr3.4:100143258-100143277 | None:intergenic | 60.0% | |
| GCTGGACCTATGTACCAGGC+TGG | + | chr3.4:100143258-100143277 | MS.gene014202:CDS | 60.0% | |
| TACCAGGCTGGGACGTTGAG+TGG | + | chr3.4:100143270-100143289 | MS.gene014202:CDS | 60.0% | |
| TCCGGCTGGACCTATGTACC+AGG | + | chr3.4:100143254-100143273 | MS.gene014202:CDS | 60.0% | |
| TGAGGCTGGGTTCACCAGCT+TGG | + | chr3.4:100143584-100143603 | MS.gene014202:CDS | 60.0% | |
| TGCCGGTATAAGCACGGGCA+AGG | - | chr3.4:100142768-100142787 | None:intergenic | 60.0% | |
| !! | CCGTCAAAGGTGCTCGCATG+TGG | + | chr3.4:100142424-100142443 | MS.gene014202:CDS | 60.0% |
| !! | GGTAGTGGAGTTGCCACCCT+AGG | + | chr3.4:100142853-100142872 | MS.gene014202:CDS | 60.0% |
| CATAGGTCCAGCCGGAGCCA+CGG | - | chr3.4:100143250-100143269 | None:intergenic | 65.0% | |
| TCCCACTCAACGTCCCAGCC+TGG | - | chr3.4:100143275-100143294 | None:intergenic | 65.0% | |
| ATGGAGACCGTGGCTCCGGC+TGG | + | chr3.4:100143240-100143259 | MS.gene014202:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 100142354 | 100143671 | 100142354 | ID=MS.gene014202 |
| chr3.4 | mRNA | 100142354 | 100143671 | 100142354 | ID=MS.gene014202.t1;Parent=MS.gene014202 |
| chr3.4 | exon | 100142354 | 100142521 | 100142354 | ID=MS.gene014202.t1.exon1;Parent=MS.gene014202.t1 |
| chr3.4 | CDS | 100142354 | 100142521 | 100142354 | ID=cds.MS.gene014202.t1;Parent=MS.gene014202.t1 |
| chr3.4 | exon | 100142604 | 100143671 | 100142604 | ID=MS.gene014202.t1.exon2;Parent=MS.gene014202.t1 |
| chr3.4 | CDS | 100142604 | 100143671 | 100142604 | ID=cds.MS.gene014202.t1;Parent=MS.gene014202.t1 |
| Gene Sequence |
| Protein sequence |
