AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014300.t1 MTR_3g116130 99.286 280 2 0 1 280 1 280 0.0 558
MS.gene014300.t1 MTR_3g116130 99.288 281 2 0 1 281 1 281 0.0 553
MS.gene014300.t1 MTR_8g024520 55.500 200 73 9 23 214 19 210 1.62e-55 181
MS.gene014300.t1 MTR_8g024520 55.500 200 73 9 23 214 19 210 1.71e-55 181
MS.gene014300.t1 MTR_5g064120 57.895 171 44 3 21 177 8 164 3.52e-49 164
MS.gene014300.t1 MTR_4g035310 78.947 95 20 0 19 113 6 100 6.80e-49 163
MS.gene014300.t1 MTR_4g035310 78.947 95 20 0 19 113 6 100 8.68e-49 163
MS.gene014300.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 2.64e-43 146
MS.gene014300.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 5.90e-42 145
MS.gene014300.t1 MTR_3g092490 76.543 81 19 0 24 104 21 101 6.32e-42 144
MS.gene014300.t1 MTR_7g117495 67.778 90 29 0 21 110 10 99 1.90e-40 141
MS.gene014300.t1 MTR_7g117495 67.778 90 29 0 21 110 10 99 2.00e-40 140
MS.gene014300.t1 MTR_2g026180 38.261 115 50 3 30 129 5 113 5.89e-20 89.7
MS.gene014300.t1 MTR_4g088010 53.012 83 39 0 25 107 72 154 7.12e-20 88.6
MS.gene014300.t1 MTR_4g088010 29.286 140 86 3 24 150 158 297 6.08e-11 62.4
MS.gene014300.t1 MTR_8g463890 46.988 83 44 0 25 107 69 151 2.53e-18 84.7
MS.gene014300.t1 MTR_7g088140 44.048 84 47 0 24 107 122 205 9.30e-18 83.2
MS.gene014300.t1 MTR_7g088140 44.048 84 47 0 24 107 122 205 1.72e-17 82.4
MS.gene014300.t1 MTR_3g055990 42.667 75 42 1 30 104 7 80 2.28e-17 82.0
MS.gene014300.t1 MTR_3g055990 42.667 75 42 1 30 104 7 80 2.58e-17 82.0
MS.gene014300.t1 MTR_5g088220 40.964 83 49 0 25 107 161 243 8.69e-17 80.5
MS.gene014300.t1 MTR_1g073690 40.000 80 47 1 25 104 2 80 1.86e-16 79.3
MS.gene014300.t1 MTR_1g073690 37.037 81 51 0 24 104 107 187 3.76e-11 63.5
MS.gene014300.t1 MTR_4g070190 44.737 76 41 1 30 104 9 84 7.34e-16 73.9
MS.gene014300.t1 MTR_3g080130 36.190 105 65 2 11 114 18 121 2.88e-15 71.2
MS.gene014300.t1 MTR_5g097580 41.333 75 43 1 30 104 7 80 4.74e-15 75.1
MS.gene014300.t1 MTR_5g097580 30.508 177 94 5 30 178 107 282 2.29e-11 64.3
MS.gene014300.t1 MTR_4g070140 44.737 76 41 1 30 104 9 84 5.58e-15 72.0
MS.gene014300.t1 MTR_5g097580 41.333 75 43 1 30 104 7 80 6.20e-15 74.7
MS.gene014300.t1 MTR_5g097580 30.508 177 94 5 30 178 107 282 2.94e-11 63.9
MS.gene014300.t1 MTR_4g070080 40.964 83 47 2 23 104 1 82 1.99e-14 68.9
MS.gene014300.t1 MTR_3g025880 40.594 101 57 3 11 110 27 125 4.60e-14 72.0
MS.gene014300.t1 MTR_7g013730 40.244 82 47 2 30 110 41 121 4.73e-14 70.5
MS.gene014300.t1 MTR_3g084040 42.029 69 40 0 29 97 36 104 4.76e-14 68.6
MS.gene014300.t1 MTR_4g070080 40.964 83 47 2 23 104 1 82 4.81e-14 68.9
MS.gene014300.t1 MTR_3g084040 42.424 66 38 0 29 94 36 101 5.78e-14 67.0
MS.gene014300.t1 MTR_4g109540 40.964 83 47 2 29 110 42 123 7.14e-14 70.5
MS.gene014300.t1 MTR_4g063560 45.070 71 38 1 29 98 33 103 2.24e-13 65.5
MS.gene014300.t1 MTR_7g105260 38.462 91 53 2 30 117 33 123 9.52e-13 64.7
MS.gene014300.t1 MTR_7g013740 34.426 122 67 3 1 110 1 121 1.72e-12 64.3
MS.gene014300.t1 MTR_3g103420 35.000 80 51 1 25 104 6 84 1.14e-11 64.7
MS.gene014300.t1 MTR_4g109540 37.363 91 47 3 29 110 42 131 1.40e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014300.t1 AT1G76460 68.512 289 73 8 1 279 1 281 2.15e-129 369
MS.gene014300.t1 AT1G20880 65.000 280 74 8 13 281 8 274 3.07e-112 325
MS.gene014300.t1 AT1G20880 65.000 280 74 8 13 281 8 274 3.07e-112 325
MS.gene014300.t1 AT1G20880 65.000 280 74 8 13 281 8 274 3.07e-112 325
MS.gene014300.t1 AT1G22330 58.385 161 51 4 21 176 9 158 8.00e-51 169
MS.gene014300.t1 AT1G33470 43.089 246 115 5 25 251 3 242 8.80e-51 167
MS.gene014300.t1 AT1G33470 43.320 247 114 6 25 251 3 243 8.89e-50 165
MS.gene014300.t1 AT1G33470 43.802 242 110 6 25 246 3 238 1.50e-49 164
MS.gene014300.t1 AT1G78260 81.176 85 16 0 21 105 9 93 2.46e-46 157
MS.gene014300.t1 AT1G22910 78.022 91 20 0 23 113 7 97 2.99e-46 155
MS.gene014300.t1 AT2G46780 51.832 191 80 6 20 199 13 202 3.53e-46 158
MS.gene014300.t1 AT2G46780 51.832 191 80 6 20 199 13 202 3.53e-46 158
MS.gene014300.t1 AT1G78260 81.176 85 16 0 21 105 9 93 3.96e-46 156
MS.gene014300.t1 AT1G22910 78.022 91 20 0 23 113 7 97 8.22e-46 155
MS.gene014300.t1 AT1G22910 78.022 91 20 0 23 113 7 97 1.57e-45 157
MS.gene014300.t1 AT3G54770 65.625 96 32 1 19 113 7 102 4.47e-38 135
MS.gene014300.t1 AT3G54770 65.625 96 32 1 19 113 7 102 5.33e-38 135
MS.gene014300.t1 AT5G11412 66.250 80 27 0 25 104 48 127 1.34e-34 123
MS.gene014300.t1 AT5G53680 55.000 80 36 0 25 104 9 88 1.96e-28 107
MS.gene014300.t1 AT3G06970 55.422 83 37 0 25 107 8 90 5.11e-26 104
MS.gene014300.t1 AT3G54770 55.556 90 25 2 45 128 1 81 6.26e-25 99.8
MS.gene014300.t1 AT5G53720 55.263 76 34 0 29 104 9 84 3.97e-24 94.0
MS.gene014300.t1 AT2G22090 46.988 83 44 0 25 107 100 182 6.93e-19 85.5
MS.gene014300.t1 AT2G22090 46.988 83 44 0 25 107 100 182 7.06e-19 85.5
MS.gene014300.t1 AT4G39260 46.053 76 40 1 30 104 7 82 1.74e-18 79.0
MS.gene014300.t1 AT4G39260 46.053 76 40 1 30 104 7 82 2.04e-18 79.7
MS.gene014300.t1 AT4G39260 46.053 76 40 1 30 104 7 82 5.78e-18 79.7
MS.gene014300.t1 AT3G15010 48.193 83 43 0 25 107 71 153 6.26e-18 83.2
MS.gene014300.t1 AT3G15010 33.333 102 68 0 12 113 150 251 1.91e-14 73.2
MS.gene014300.t1 AT3G15010 48.193 83 43 0 25 107 71 153 6.26e-18 83.2
MS.gene014300.t1 AT3G15010 33.333 102 68 0 12 113 150 251 1.91e-14 73.2
MS.gene014300.t1 AT4G26650 42.667 75 42 1 30 104 16 89 1.07e-17 82.8
MS.gene014300.t1 AT4G26650 42.667 75 42 1 30 104 13 86 1.10e-17 82.8
MS.gene014300.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.89e-17 82.0
MS.gene014300.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.89e-17 82.0
MS.gene014300.t1 AT5G47620 38.889 90 51 2 29 118 6 91 1.89e-17 82.0
MS.gene014300.t1 AT4G39260 52.632 57 27 0 30 86 7 63 2.12e-17 76.3
MS.gene014300.t1 AT5G47620 46.377 69 36 1 29 97 6 73 2.18e-17 82.0
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.35e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.44e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.47e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.47e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.47e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.47e-17 81.6
MS.gene014300.t1 AT5G55550 45.588 68 36 1 30 97 7 73 3.48e-17 81.6
MS.gene014300.t1 AT2G19380 31.073 177 107 5 1 166 382 554 6.67e-17 80.9
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT3G56860 40.964 83 49 0 25 107 136 218 1.93e-16 79.3
MS.gene014300.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.07e-16 79.3
MS.gene014300.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.07e-16 79.3
MS.gene014300.t1 AT2G41060 38.889 90 55 0 25 114 124 213 2.07e-16 79.3
MS.gene014300.t1 AT3G23830 39.326 89 52 2 29 116 35 122 2.71e-16 74.3
MS.gene014300.t1 AT3G23830 39.326 89 52 2 29 116 35 122 2.71e-16 74.3
MS.gene014300.t1 AT2G22100 29.500 200 126 6 10 195 140 338 2.86e-16 78.6
MS.gene014300.t1 AT4G13850 45.833 72 35 1 29 100 35 102 2.89e-16 73.9
MS.gene014300.t1 AT3G07810 41.333 75 43 1 30 104 7 80 4.26e-16 78.2
MS.gene014300.t1 AT4G13850 43.529 85 46 2 29 112 35 118 4.36e-16 73.9
MS.gene014300.t1 AT3G07810 41.333 75 43 1 30 104 7 80 4.51e-16 78.2
MS.gene014300.t1 AT4G13850 43.529 85 46 2 29 112 35 118 5.38e-16 73.9
MS.gene014300.t1 AT4G13850 43.529 85 46 2 29 112 35 118 6.02e-16 73.9
MS.gene014300.t1 AT2G21660 42.683 82 45 2 24 104 4 84 2.61e-15 72.4
MS.gene014300.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.72e-15 75.1
MS.gene014300.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.72e-15 75.1
MS.gene014300.t1 AT1G17640 34.545 110 59 3 30 139 67 163 3.72e-15 75.1
MS.gene014300.t1 AT2G21660 42.683 82 45 2 24 104 4 84 3.74e-15 72.4
MS.gene014300.t1 AT2G33410 33.913 115 63 2 30 132 7 120 1.27e-14 73.6
MS.gene014300.t1 AT4G14300 38.750 80 48 1 25 104 2 80 2.92e-14 72.8
MS.gene014300.t1 AT4G14300 38.750 80 48 1 25 104 2 80 2.92e-14 72.8
MS.gene014300.t1 AT5G61030 38.750 80 39 2 29 108 40 109 1.54e-12 67.0
MS.gene014300.t1 AT5G61030 38.750 80 39 2 29 108 40 109 1.54e-12 67.0
MS.gene014300.t1 AT1G74230 37.179 78 49 0 29 106 34 111 4.50e-12 65.5
MS.gene014300.t1 AT3G26420 43.478 69 38 1 30 97 8 76 4.81e-12 64.7
MS.gene014300.t1 AT1G18630 42.857 70 39 1 29 97 36 105 1.70e-11 61.6
MS.gene014300.t1 AT5G59865 48.980 49 25 0 29 77 26 74 3.13e-11 59.7
MS.gene014300.t1 AT1G22910 71.795 39 11 0 75 113 8 46 4.95e-11 61.2
MS.gene014300.t1 AT3G13224 32.877 73 48 1 30 102 20 91 5.73e-11 62.8
MS.gene014300.t1 AT5G04280 44.444 54 30 0 29 82 7 60 7.00e-11 62.0

Find 108 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGTTACTTTGAACAATT+TGG 0.153087 3.1:-91742909 MS.gene014300:CDS
AATACAACTATTTATCCTTA+TGG 0.237313 3.1:-91741364 MS.gene014300:CDS
GGAATGGTTTATCCTCCTTA+TGG 0.259852 3.1:-91742104 MS.gene014300:CDS
AGGACTGTACCGCTAGGATA+TGG 0.287341 3.1:+91741202 None:intergenic
CAATTGTTGAATTCTCCTTT+TGG 0.309482 3.1:-91742996 MS.gene014300:CDS
TATTTATCCTTATGGACAAT+TGG 0.319044 3.1:-91741356 MS.gene014300:CDS
ACCTGTGGGTATACGTATTC+AGG 0.345135 3.1:+91741540 None:intergenic
GGTGCCTACGTTGGAGGTTA+TGG 0.353929 3.1:-91742161 MS.gene014300:CDS
GTCCTGTTATTGATGGTAGA+AGG 0.354869 3.1:-91742448 MS.gene014300:CDS
CAACAGTACCTTCAGATATA+TGG 0.362755 3.1:-91741403 MS.gene014300:CDS
GAATGGTTTATCCTCCTTAT+GGG 0.365347 3.1:-91742103 MS.gene014300:intron
GGAATTGCTGCACCAGTTCC+AGG 0.368536 3.1:-91740124 MS.gene014300:CDS
CAGGATCAAGTTCGAGTTCT+GGG 0.370870 3.1:-91743022 MS.gene014300:CDS
GCATACCAGGGTCCAAGTTC+AGG 0.377967 3.1:-91743041 MS.gene014300:CDS
TCAGGATCAAGTTCGAGTTC+TGG 0.380866 3.1:-91743023 MS.gene014300:CDS
TACTGTTGTTGACCAGCATA+AGG 0.402296 3.1:+91741418 None:intergenic
CTCGAACTTGATCCTGAACT+TGG 0.405699 3.1:+91743029 None:intergenic
ACTTTCCTATGGCTATCAAC+AGG 0.406701 3.1:-91742126 MS.gene014300:CDS
GCCCTTCTACCATCAATAAC+AGG 0.411876 3.1:+91742446 None:intergenic
CAATTGGGTCAAGCTGTTCC+TGG 0.414666 3.1:-91741340 MS.gene014300:CDS
ATTTATCCTTATGGACAATT+GGG 0.419932 3.1:-91741355 MS.gene014300:CDS
GCTCACAAAACCGTAGCCTT+TGG 0.426083 3.1:+91742839 None:intergenic
ATAGCATACCATATGAGATT+GGG 0.427085 3.1:+91742384 None:intergenic
CAGGCTCTCCTAGCAGCCTC+TGG 0.436509 3.1:+91742482 None:intergenic
TAAAGTCTTCGTTGGTGGAT+TGG 0.444418 3.1:-91742958 MS.gene014300:CDS
AATAGCATACCATATGAGAT+TGG 0.458747 3.1:+91742383 None:intergenic
ACCGTAGCCTTTGGATCGTC+CGG 0.458930 3.1:+91742848 None:intergenic
CTACCATCAATAACAGGACT+TGG 0.459160 3.1:+91742452 None:intergenic
CCTCAACCATCTGTTTGGTC+AGG 0.464509 3.1:+91740055 None:intergenic
CGTCCCCTCAACCATCTGTT+TGG 0.471470 3.1:+91740050 None:intergenic
GCCCGTGGTGCCTACGTTGG+AGG 0.473342 3.1:-91742167 MS.gene014300:CDS
ACAATAAATTGTGGTTGGCC+TGG 0.475736 3.1:+91740106 None:intergenic
TCATGGTTATACAGCAATGC+AGG 0.476637 3.1:-91741314 MS.gene014300:CDS
GCTTGACCCAATTGTCCATA+AGG 0.479896 3.1:+91741349 None:intergenic
CATCAGATTGTGCCCTATGG+TGG 0.479906 3.1:-91741274 MS.gene014300:CDS
CTATGGCTATCAACAGGGAA+TGG 0.482459 3.1:-91742120 MS.gene014300:CDS
CAAGCTGTTCCTGGCGGTCA+TGG 0.484640 3.1:-91741331 MS.gene014300:CDS
GATCCAAGTCCTGTTATTGA+TGG 0.488968 3.1:-91742455 MS.gene014300:CDS
ACCTCCAACGTAGGCACCAC+GGG 0.492680 3.1:+91742166 None:intergenic
CTTCCAACATAAGGAGATGC+TGG 0.500325 3.1:+91742200 None:intergenic
TATACTAAAGTCTTCGTTGG+TGG 0.503912 3.1:-91742963 MS.gene014300:CDS
GGACTGTACCGCTAGGATAT+GGG 0.505345 3.1:+91741203 None:intergenic
ACTTATACTAAAGTCTTCGT+TGG 0.505982 3.1:-91742966 MS.gene014300:CDS
TAGAAGGGCTAATTGTAACT+TGG 0.507997 3.1:-91742432 MS.gene014300:CDS
AATTGTGGTTGGCCTGGAAC+TGG 0.508286 3.1:+91740112 None:intergenic
CAGCATCCCACTCACCCATA+AGG 0.512059 3.1:+91742089 None:intergenic
TACCAACAACCACTTTCCTA+TGG 0.512893 3.1:-91742137 MS.gene014300:CDS
ACTGTTGTTGACCAGCATAA+GGG 0.516296 3.1:+91741419 None:intergenic
CTTCAGATATATGGTGTGCC+TGG 0.520918 3.1:-91741394 MS.gene014300:CDS
GGTTGCAAACTTCCAACATA+AGG 0.521111 3.1:+91742191 None:intergenic
ATTAACATTGGACCCACCAT+AGG 0.522838 3.1:+91741261 None:intergenic
AATTGTAACTTGGCTTCGCA+TGG 0.524644 3.1:-91742422 MS.gene014300:CDS
CCAACGTAGGCACCACGGGC+TGG 0.528290 3.1:+91742170 None:intergenic
AGTTGTTATTGCATTAACAT+TGG 0.528485 3.1:+91741249 None:intergenic
GGTCATCAGATTGTGCCCTA+TGG 0.532673 3.1:-91741277 MS.gene014300:CDS
TCTTCGTTGGTGGATTGGCA+TGG 0.533106 3.1:-91742953 MS.gene014300:CDS
CTCCAAATTGTTCAAAGTAA+CGG 0.539239 3.1:+91742907 None:intergenic
CTTCGTTGGTGGATTGGCAT+GGG 0.539784 3.1:-91742952 MS.gene014300:CDS
GCTGTATAACCATGACCGCC+AGG 0.540975 3.1:+91741322 None:intergenic
TCCTAGCAGCCTCTGGATCA+CGG 0.541344 3.1:+91742489 None:intergenic
ATCAGATTGTGCCCTATGGT+GGG 0.545371 3.1:-91741273 MS.gene014300:CDS
AGACCAGCATCTCCTTATGT+TGG 0.552478 3.1:-91742203 MS.gene014300:CDS
TCCTGTTATTGATGGTAGAA+GGG 0.553892 3.1:-91742447 MS.gene014300:CDS
GGTATGTACAACCCTTATGC+TGG 0.554007 3.1:-91741430 MS.gene014300:CDS
TGGGACTTGAATGGCAGGCA+CGG 0.554141 3.1:+91741222 None:intergenic
GGGACTTGAATGGCAGGCAC+GGG 0.554491 3.1:+91741223 None:intergenic
CCAGCCCGTGGTGCCTACGT+TGG 0.554812 3.1:-91742170 MS.gene014300:CDS
AGTGTGATTAATGGCATACC+AGG 0.559750 3.1:-91743054 None:intergenic
TTGATCCTGAACTTGGACCC+TGG 0.560791 3.1:+91743036 None:intergenic
AGCCATAGGAAAGTGGTTGT+TGG 0.564090 3.1:+91742135 None:intergenic
GGATATGGGACTTGAATGGC+AGG 0.565965 3.1:+91741217 None:intergenic
CTGACCAAACAGATGGTTGA+GGG 0.567593 3.1:-91740054 None:intergenic
CCTCAGTTTATGCAAGGTAG+CGG 0.569657 3.1:-91740079 MS.gene014300:CDS
GAGAAACAATAAATTGTGGT+TGG 0.575026 3.1:+91740101 None:intergenic
GTATAAGTAGTATCTCCAAA+AGG 0.576903 3.1:+91742981 None:intergenic
ATGCAGGGTTATACAGTACC+AGG 0.577248 3.1:-91741298 MS.gene014300:CDS
CATTCCCTGTTGATAGCCAT+AGG 0.583457 3.1:+91742121 None:intergenic
TAGCATACCATATGAGATTG+GGG 0.583743 3.1:+91742385 None:intergenic
GTTTCTCCTCAGTTTATGCA+AGG 0.585322 3.1:-91740085 MS.gene014300:CDS
TCCGTGATCCAGAGGCTGCT+AGG 0.585544 3.1:-91742490 MS.gene014300:CDS
GCTAGGATATGGGACTTGAA+TGG 0.586705 3.1:+91741213 None:intergenic
AACAGGACTTGGATCAGCAC+AGG 0.593305 3.1:+91742463 None:intergenic
TGTTGATAGCCATAGGAAAG+TGG 0.600019 3.1:+91742128 None:intergenic
AAGAACACCGGACGATCCAA+AGG 0.601945 3.1:-91742855 MS.gene014300:CDS
CCTGACCAAACAGATGGTTG+AGG 0.601994 3.1:-91740055 None:intergenic
CTTTCCTATGGCTATCAACA+GGG 0.608429 3.1:-91742125 MS.gene014300:CDS
TAGGGCACAATCTGATGACC+TGG 0.609886 3.1:+91741280 None:intergenic
ACCGGACGATCCAAAGGCTA+CGG 0.610204 3.1:-91742849 MS.gene014300:CDS
TGAGGAGAAACAATAAATTG+TGG 0.616646 3.1:+91740097 None:intergenic
TTAACATTGGACCCACCATA+GGG 0.618343 3.1:+91741262 None:intergenic
AACCTCCAACGTAGGCACCA+CGG 0.618711 3.1:+91742165 None:intergenic
GGAAGTTTGCAACCAGCCCG+TGG 0.632845 3.1:-91742182 MS.gene014300:CDS
CAGGCACACCATATATCTGA+AGG 0.636375 3.1:+91741395 None:intergenic
GGTGACTTTCCGTGATCCAG+AGG 0.637483 3.1:-91742498 MS.gene014300:CDS
AGCGGTCCTGACCAAACAGA+TGG 0.639591 3.1:-91740061 MS.gene014300:CDS
GCTTCGCATGGTCGTCCACG+TGG 0.643033 3.1:-91742410 MS.gene014300:CDS
ATAGTTGTATTCATCGCACC+AGG 0.645261 3.1:+91741376 None:intergenic
CATGGTTATACAGCAATGCA+GGG 0.646571 3.1:-91741313 MS.gene014300:CDS
CATCCCACTCACCCATAAGG+AGG 0.654523 3.1:+91742092 None:intergenic
ACCTGAATACGTATACCCAC+AGG 0.654631 3.1:-91741541 MS.gene014300:intron
GTAGCCATAACCTCCAACGT+AGG 0.685657 3.1:+91742157 None:intergenic
GTCATCACTGATAAGAACAC+CGG 0.699829 3.1:-91742867 MS.gene014300:CDS
CCGCTACCTTGCATAAACTG+AGG 0.704628 3.1:+91740079 None:intergenic
TTGGGTCAAGCTGTTCCTGG+CGG 0.707255 3.1:-91741337 MS.gene014300:CDS
GTGTGATTAATGGCATACCA+GGG 0.710100 3.1:-91743053 None:intergenic
AGCATACCATATGAGATTGG+GGG 0.719081 3.1:+91742386 None:intergenic
GTTCTTATCAGTGATGACGA+CGG 0.732189 3.1:+91742872 None:intergenic
ATTCAAGTCCCATATCCTAG+CGG 0.771653 3.1:-91741211 MS.gene014300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAATTAAAAAATAT+AGG - chr3.1:91742776-91742795 MS.gene014300:intron 0.0%
!! AAAAATAAAATATAAATTCC+CGG + chr3.1:91742462-91742481 None:intergenic 10.0%
!! AAATTTATGTACAAAATTAA+GGG - chr3.1:91742726-91742745 MS.gene014300:intron 10.0%
!! TAAATTTATGTACAAAATTA+AGG - chr3.1:91742725-91742744 MS.gene014300:intron 10.0%
!! TGATAAATTATTTAATGTAA+CGG + chr3.1:91742081-91742100 None:intergenic 10.0%
!!! ATATCAGTTTTTTTTTTATT+TGG - chr3.1:91741585-91741604 MS.gene014300:intron 10.0%
!!! CTAGTAAATTTTTTTTTTTT+TGG + chr3.1:91742338-91742357 None:intergenic 10.0%
!!! TAATTTTGTACATAAATTTA+GGG + chr3.1:91742725-91742744 None:intergenic 10.0%
!!! TTAATTTTGTACATAAATTT+AGG + chr3.1:91742726-91742745 None:intergenic 10.0%
!! AAAAAAAATTTACTAGAACA+TGG - chr3.1:91742342-91742361 MS.gene014300:intron 15.0%
!! AAAAAAATTTACTAGAACAT+GGG - chr3.1:91742343-91742362 MS.gene014300:intron 15.0%
!! AAAATAAAATATAAATTCCC+GGG + chr3.1:91742461-91742480 None:intergenic 15.0%
!! AATGTTAATTCCAATATATA+TGG + chr3.1:91742560-91742579 None:intergenic 15.0%
!! ATATAAACAAAGAAAGAAAT+AGG + chr3.1:91740339-91740358 None:intergenic 15.0%
!! ATGTTAATTCCAATATATAT+GGG + chr3.1:91742559-91742578 None:intergenic 15.0%
!! TATAAACAAAGAAAGAAATA+GGG + chr3.1:91740338-91740357 None:intergenic 15.0%
!! TGTTTATATTCTATCATATA+AGG - chr3.1:91740350-91740369 MS.gene014300:intron 15.0%
!!! AAATTTTTTTTTTTTTGGTC+AGG + chr3.1:91742333-91742352 None:intergenic 15.0%
!!! ATAATGATAATTTTATTCCT+AGG - chr3.1:91741989-91742008 MS.gene014300:intron 15.0%
!! AATACAACTATTTATCCTTA+TGG - chr3.1:91741737-91741756 MS.gene014300:intron 20.0%
!! TAAATAATTTATCAGAACGT+GGG - chr3.1:91742087-91742106 MS.gene014300:intron 20.0%
!! TATTATTATTAGCAGATTGA+CGG + chr3.1:91741079-91741098 None:intergenic 20.0%
!! TTAAATAATTTATCAGAACG+TGG - chr3.1:91742086-91742105 MS.gene014300:intron 20.0%
!! TTATTTACTATAGAATGACT+TGG - chr3.1:91740546-91740565 MS.gene014300:intron 20.0%
!!! AATTATCATTATTGTTTTCC+TGG + chr3.1:91741981-91742000 None:intergenic 20.0%
!!! ATTATCATTATTGTTTTCCT+GGG + chr3.1:91741980-91741999 None:intergenic 20.0%
!!! GATCTTTTCAACATTATATT+TGG - chr3.1:91741505-91741524 MS.gene014300:intron 20.0%
!!! GATTTCTTCTTATCTTTTAT+AGG - chr3.1:91740868-91740887 MS.gene014300:intron 20.0%
!!! GTTTTGTAATATATGATAGA+AGG - chr3.1:91742748-91742767 MS.gene014300:intron 20.0%
!!! GTTTTTTTTTTATTTGGCTT+AGG - chr3.1:91741591-91741610 MS.gene014300:intron 20.0%
! AAACAAAAGCCCATATATAT+TGG - chr3.1:91742547-91742566 MS.gene014300:intron 25.0%
! AAATAATTTATCAGAACGTG+GGG - chr3.1:91742088-91742107 MS.gene014300:intron 25.0%
! AATTTGAGAAAATGATGACA+TGG - chr3.1:91740413-91740432 MS.gene014300:intron 25.0%
! ACAATGCATTATTATATGCA+GGG - chr3.1:91742241-91742260 MS.gene014300:intron 25.0%
! ACATGGAGACTAATATTAAA+TGG + chr3.1:91741414-91741433 None:intergenic 25.0%
! ACTTTAAATTCTGTGCAAAT+AGG - chr3.1:91742928-91742947 MS.gene014300:CDS 25.0%
! ATTTATCCTTATGGACAATT+GGG - chr3.1:91741746-91741765 MS.gene014300:intron 25.0%
! GTAATATATGATAGAAGGTT+GGG - chr3.1:91742753-91742772 MS.gene014300:intron 25.0%
! TACTTGATTAGTAGTTAGTT+AGG - chr3.1:91741248-91741267 MS.gene014300:CDS 25.0%
! TATTTATCCTTATGGACAAT+TGG - chr3.1:91741745-91741764 MS.gene014300:intron 25.0%
! TCACATATATATCTATGTGT+CGG - chr3.1:91740438-91740457 MS.gene014300:intron 25.0%
! TGTAATATATGATAGAAGGT+TGG - chr3.1:91742752-91742771 MS.gene014300:intron 25.0%
! TTATTACATCCAATTGACAT+AGG + chr3.1:91741383-91741402 None:intergenic 25.0%
!! AGTTGTTATTGCATTAACAT+TGG + chr3.1:91741855-91741874 None:intergenic 25.0%
!! ATTTAATATTAGTCTCCATG+TGG - chr3.1:91741413-91741432 MS.gene014300:CDS 25.0%
!! CATTTCTTTGAAAAAATCCT+AGG + chr3.1:91742009-91742028 None:intergenic 25.0%
!! TACAATGTTCAACAATGTTT+TGG + chr3.1:91740394-91740413 None:intergenic 25.0%
!! TCTTCTTATCTTTTATAGGA+CGG - chr3.1:91740872-91740891 MS.gene014300:intron 25.0%
!! TTTAATATTAGTCTCCATGT+GGG - chr3.1:91741414-91741433 MS.gene014300:CDS 25.0%
!!! AATTCTTAACAAGCATTGAT+TGG - chr3.1:91742610-91742629 MS.gene014300:intron 25.0%
!!! CTAGTCATTTTTATTCACAT+GGG + chr3.1:91742188-91742207 None:intergenic 25.0%
!!! GTTTTATCTTTTCAGGTATA+CGG - chr3.1:91741530-91741549 MS.gene014300:intron 25.0%
!!! TCTAGTCATTTTTATTCACA+TGG + chr3.1:91742189-91742208 None:intergenic 25.0%
!!! TTCGTAAGTATTTGATTTTC+AGG - chr3.1:91742956-91742975 MS.gene014300:CDS 25.0%
!!! TTTGGTTGTTTTATCTTTTC+AGG - chr3.1:91741523-91741542 MS.gene014300:intron 25.0%
AAAAAAACTGATATGACCTG+TGG + chr3.1:91741579-91741598 None:intergenic 30.0%
AAAAAACTGATATGACCTGT+GGG + chr3.1:91741578-91741597 None:intergenic 30.0%
AAGCAATGTATATTCTATGC+AGG + chr3.1:91740839-91740858 None:intergenic 30.0%
AATAGCATACCATATGAGAT+TGG + chr3.1:91740721-91740740 None:intergenic 30.0%
ACCTTATAAGGTGAATAAGT+GGG + chr3.1:91742290-91742309 None:intergenic 30.0%
ACTTATACTAAAGTCTTCGT+TGG - chr3.1:91740135-91740154 MS.gene014300:intron 30.0%
AGTCAAAAAAACACGATAAC+TGG + chr3.1:91741176-91741195 None:intergenic 30.0%
ATAGCATACCATATGAGATT+GGG + chr3.1:91740720-91740739 None:intergenic 30.0%
ATGAATGATACGACATATGT+AGG - chr3.1:91742682-91742701 MS.gene014300:intron 30.0%
ATGGCTGTTCATAAACAAAA+AGG + chr3.1:91742506-91742525 None:intergenic 30.0%
CAATGCATTATTATATGCAG+GGG - chr3.1:91742242-91742261 MS.gene014300:intron 30.0%
CTATCTTATATGCATGGAAT+TGG - chr3.1:91740572-91740591 MS.gene014300:intron 30.0%
CTCCAAATTGTTCAAAGTAA+CGG + chr3.1:91740197-91740216 None:intergenic 30.0%
CTTAAGGTCTATCAATGTAA+TGG + chr3.1:91742034-91742053 None:intergenic 30.0%
CTTGCAAGAATATGTTGTAT+AGG + chr3.1:91741228-91741247 None:intergenic 30.0%
GAAAATTCTATTACCAGGAA+TGG + chr3.1:91742155-91742174 None:intergenic 30.0%
GACAATGCATTATTATATGC+AGG - chr3.1:91742240-91742259 MS.gene014300:intron 30.0%
GAGAAACAATAAATTGTGGT+TGG + chr3.1:91743003-91743022 None:intergenic 30.0%
GGAACAAAAATAATATGCCT+AGG + chr3.1:91742397-91742416 None:intergenic 30.0%
GTATAAGTAGTATCTCCAAA+AGG + chr3.1:91740123-91740142 None:intergenic 30.0%
GTCAAAAAAACACGATAACT+GGG + chr3.1:91741175-91741194 None:intergenic 30.0%
TATGGAAAACCTATGTCAAT+TGG - chr3.1:91741371-91741390 MS.gene014300:CDS 30.0%
TGAGGAGAAACAATAAATTG+TGG + chr3.1:91743007-91743026 None:intergenic 30.0%
TGGCTGTTCATAAACAAAAA+GGG + chr3.1:91742505-91742524 None:intergenic 30.0%
TGGTTTCTATCTTATATGCA+TGG - chr3.1:91740566-91740585 MS.gene014300:intron 30.0%
TGTAACTGCTAAAATAAGCA+TGG + chr3.1:91741138-91741157 None:intergenic 30.0%
! ATTTTTATTCACATGGGAGA+GGG + chr3.1:91742182-91742201 None:intergenic 30.0%
! CAATGCTTGTTAAGAATTGA+AGG + chr3.1:91742608-91742627 None:intergenic 30.0%
! CAATTGTTGAATTCTCCTTT+TGG - chr3.1:91740105-91740124 MS.gene014300:CDS 30.0%
! CTTCTTATCTTTTATAGGAC+GGG - chr3.1:91740873-91740892 MS.gene014300:intron 30.0%
! TAATTGAAGTTCTGATCAAC+AGG - chr3.1:91742799-91742818 MS.gene014300:intron 30.0%
!!! AGTTATCGTGTTTTTTTGAC+TGG - chr3.1:91741175-91741194 MS.gene014300:intron 30.0%
!!! TTCCTTTTTTGTGAGTAATG+AGG + chr3.1:91742057-91742076 None:intergenic 30.0%
AAAGAACCATAACACAGGAA+AGG + chr3.1:91741111-91741130 None:intergenic 35.0%
AAGAATTTCCACTTGTGACT+CGG - chr3.1:91741932-91741951 MS.gene014300:intron 35.0%
AGCCTCATTACTCACAAAAA+AGG - chr3.1:91742052-91742071 MS.gene014300:intron 35.0%
ATATAAATTCCCGGGAATAG+AGG + chr3.1:91742453-91742472 None:intergenic 35.0%
CAAAGAATATCCACCAAAGA+TGG + chr3.1:91742525-91742544 None:intergenic 35.0%
CAACAGTACCTTCAGATATA+TGG - chr3.1:91741698-91741717 MS.gene014300:intron 35.0%
CACAAGTGGAAATTCTTTCT+TGG + chr3.1:91741929-91741948 None:intergenic 35.0%
CACCTTATAAGGTGAATAAG+TGG + chr3.1:91742291-91742310 None:intergenic 35.0%
CCTAGGAATAAATAATACCG+AGG + chr3.1:91742380-91742399 None:intergenic 35.0%
CCTCGGTATTATTTATTCCT+AGG - chr3.1:91742377-91742396 MS.gene014300:intron 35.0%
CCTTATAAGGTGAATAAGTG+GGG + chr3.1:91742289-91742308 None:intergenic 35.0%
CTTATATGCATGGAATTGGA+GGG - chr3.1:91740576-91740595 MS.gene014300:intron 35.0%
GAAAAAGGAATTCCTGTGTT+TGG + chr3.1:91742426-91742445 None:intergenic 35.0%
GAATGGTTTATCCTCCTTAT+GGG - chr3.1:91740998-91741017 MS.gene014300:intron 35.0%
GGAAAGTTATTCCAAAGGAA+TGG + chr3.1:91741959-91741978 None:intergenic 35.0%
TAGAAGGGCTAATTGTAACT+TGG - chr3.1:91740669-91740688 MS.gene014300:intron 35.0%
TAGCATACCATATGAGATTG+GGG + chr3.1:91740719-91740738 None:intergenic 35.0%
TATACTAAAGTCTTCGTTGG+TGG - chr3.1:91740138-91740157 MS.gene014300:intron 35.0%
TCTTATATGCATGGAATTGG+AGG - chr3.1:91740575-91740594 MS.gene014300:intron 35.0%
TGGCTAGAATTCACCTTATA+AGG + chr3.1:91742302-91742321 None:intergenic 35.0%
TGTTTATGAACAGCCATCTT+TGG - chr3.1:91742509-91742528 MS.gene014300:intron 35.0%
TTGCACACTATTGCAAAAAC+TGG - chr3.1:91741035-91741054 MS.gene014300:intron 35.0%
TTTGTGAGTAATGAGGCTTA+AGG + chr3.1:91742050-91742069 None:intergenic 35.0%
! AGTAGCTAGTCTGTAAAGAA+TGG - chr3.1:91742824-91742843 MS.gene014300:intron 35.0%
! CATAGGTTTTCCATATACAG+TGG + chr3.1:91741366-91741385 None:intergenic 35.0%
! CATTTTTATTCACATGGGAG+AGG + chr3.1:91742183-91742202 None:intergenic 35.0%
! TCCTGTTATTGATGGTAGAA+GGG - chr3.1:91740654-91740673 MS.gene014300:intron 35.0%
! TTTTTATTCACATGGGAGAG+GGG + chr3.1:91742181-91742200 None:intergenic 35.0%
AACTTCTACCGTGTCCAATA+GGG - chr3.1:91741650-91741669 MS.gene014300:intron 40.0%
AAGGAATTCCTGTGTTTGGT+AGG + chr3.1:91742422-91742441 None:intergenic 40.0%
AAGGGTTGTACATACCCTAT+TGG + chr3.1:91741667-91741686 None:intergenic 40.0%
AATCACTGGTCCACTGTATA+TGG - chr3.1:91741353-91741372 MS.gene014300:CDS 40.0%
AATTCCTGTGTTTGGTAGGA+AGG + chr3.1:91742418-91742437 None:intergenic 40.0%
AATTGTAACTTGGCTTCGCA+TGG - chr3.1:91740679-91740698 MS.gene014300:intron 40.0%
ACCAGTGATTACCAAATCTC+GGG + chr3.1:91741284-91741303 None:intergenic 40.0%
ACTGGTATATGTCAGTGATG+AGG - chr3.1:91741193-91741212 MS.gene014300:intron 40.0%
ACTGTTGTTGACCAGCATAA+GGG + chr3.1:91741685-91741704 None:intergenic 40.0%
ACTTTCCTATGGCTATCAAC+AGG - chr3.1:91740975-91740994 MS.gene014300:intron 40.0%
AGAATTTCCACTTGTGACTC+GGG - chr3.1:91741933-91741952 MS.gene014300:intron 40.0%
AGCATACCATATGAGATTGG+GGG + chr3.1:91740718-91740737 None:intergenic 40.0%
ATAGTTGTATTCATCGCACC+AGG + chr3.1:91741728-91741747 None:intergenic 40.0%
ATTAACATTGGACCCACCAT+AGG + chr3.1:91741843-91741862 None:intergenic 40.0%
ATTCAAGTCCCATATCCTAG+CGG - chr3.1:91741890-91741909 MS.gene014300:intron 40.0%
CACATACACTTATCAGCTGT+TGG - chr3.1:91742639-91742658 MS.gene014300:intron 40.0%
CATGGTTATACAGCAATGCA+GGG - chr3.1:91741788-91741807 MS.gene014300:intron 40.0%
CCATGCTAGTATGATCAACA+CGG + chr3.1:91740516-91740535 None:intergenic 40.0%
CCCCACTTATTCACCTTATA+AGG - chr3.1:91742286-91742305 MS.gene014300:intron 40.0%
CTACCATCAATAACAGGACT+TGG + chr3.1:91740652-91740671 None:intergenic 40.0%
CTTTCCTATGGCTATCAACA+GGG - chr3.1:91740976-91740995 MS.gene014300:intron 40.0%
GACACAAAGAACCATAACAC+AGG + chr3.1:91741116-91741135 None:intergenic 40.0%
GACCAGTGATTACCAAATCT+CGG + chr3.1:91741285-91741304 None:intergenic 40.0%
GAGATGAAAATCCCGAGATT+TGG - chr3.1:91741270-91741289 MS.gene014300:CDS 40.0%
GATCCAAGTCCTGTTATTGA+TGG - chr3.1:91740646-91740665 MS.gene014300:intron 40.0%
GCTGATAAGTGTATGTGATC+TGG + chr3.1:91742636-91742655 None:intergenic 40.0%
GGAAATTCTTTCTTGGACAG+AGG + chr3.1:91741922-91741941 None:intergenic 40.0%
GGAATGGTTTATCCTCCTTA+TGG - chr3.1:91740997-91741016 MS.gene014300:intron 40.0%
GGTGGGAAAATTCTATTACC+AGG + chr3.1:91742160-91742179 None:intergenic 40.0%
GGTTGCAAACTTCCAACATA+AGG + chr3.1:91740913-91740932 None:intergenic 40.0%
GTCATCACTGATAAGAACAC+CGG - chr3.1:91740234-91740253 MS.gene014300:intron 40.0%
GTTTCTCCTCAGTTTATGCA+AGG - chr3.1:91743016-91743035 MS.gene014300:CDS 40.0%
TAAGGTGAATTCTAGCCACT+AGG - chr3.1:91742304-91742323 MS.gene014300:intron 40.0%
TACCAACAACCACTTTCCTA+TGG - chr3.1:91740964-91740983 MS.gene014300:intron 40.0%
TACTGTTGTTGACCAGCATA+AGG + chr3.1:91741686-91741705 None:intergenic 40.0%
TCATGGTTATACAGCAATGC+AGG - chr3.1:91741787-91741806 MS.gene014300:intron 40.0%
TCCTGGGAAAGTTATTCCAA+AGG + chr3.1:91741964-91741983 None:intergenic 40.0%
TGTACATACCCTATTGGACA+CGG + chr3.1:91741661-91741680 None:intergenic 40.0%
TTAACATTGGACCCACCATA+GGG + chr3.1:91741842-91741861 None:intergenic 40.0%
TTAGATGCACAATGCAGATG+TGG + chr3.1:91741454-91741473 None:intergenic 40.0%
TTATGAACAGCCATCTTTGG+TGG - chr3.1:91742512-91742531 MS.gene014300:intron 40.0%
! AAGCCTTATCTCACTAAGTG+GGG - chr3.1:91741327-91741346 MS.gene014300:CDS 40.0%
! ACAATAAATTGTGGTTGGCC+TGG + chr3.1:91742998-91743017 None:intergenic 40.0%
! CAAGCCTTATCTCACTAAGT+GGG - chr3.1:91741326-91741345 MS.gene014300:CDS 40.0%
! CATGGGTTAAGTAGATTCCT+CGG - chr3.1:91742360-91742379 MS.gene014300:intron 40.0%
! CGCCGTTACTTTGAACAATT+TGG - chr3.1:91740192-91740211 MS.gene014300:intron 40.0%
! GGTTGTTGTTGTTGTTGTAG+TGG + chr3.1:91741307-91741326 None:intergenic 40.0%
! GTCCTGTTATTGATGGTAGA+AGG - chr3.1:91740653-91740672 MS.gene014300:intron 40.0%
! GTTCTTATCAGTGATGACGA+CGG + chr3.1:91740232-91740251 None:intergenic 40.0%
! TAAAGTCTTCGTTGGTGGAT+TGG - chr3.1:91740143-91740162 MS.gene014300:intron 40.0%
! TATTAGTCTCCATGTGGGTA+AGG - chr3.1:91741419-91741438 MS.gene014300:CDS 40.0%
! TTTTTCCCATCCTCTATTCC+CGG - chr3.1:91742440-91742459 MS.gene014300:CDS 40.0%
!! AATGAGTTTTGCTCTGAACG+TGG - chr3.1:91742124-91742143 MS.gene014300:CDS 40.0%
!! ATGAGTTTTGCTCTGAACGT+GGG - chr3.1:91742125-91742144 MS.gene014300:CDS 40.0%
!! TCACCTCTAAAGCATGATTC+TGG + chr3.1:91741487-91741506 None:intergenic 40.0%
!! TCCTTTGGAATAACTTTCCC+AGG - chr3.1:91741960-91741979 MS.gene014300:intron 40.0%
!! TCTATGCAGGAAGAGTATTC+TGG + chr3.1:91740826-91740845 None:intergenic 40.0%
!! TGTTGATAGCCATAGGAAAG+TGG + chr3.1:91740976-91740995 None:intergenic 40.0%
!!! CTTTTCAGGTATACGGCATA+TGG - chr3.1:91741537-91741556 MS.gene014300:intron 40.0%
AAATTCCCGGGAATAGAGGA+TGG + chr3.1:91742449-91742468 None:intergenic 45.0%
AATTCCCGGGAATAGAGGAT+GGG + chr3.1:91742448-91742467 None:intergenic 45.0%
ACCTGAATACGTATACCCAC+AGG - chr3.1:91741560-91741579 MS.gene014300:intron 45.0%
ACCTGTGGGTATACGTATTC+AGG + chr3.1:91741564-91741583 None:intergenic 45.0%
ACGCCAGAATCATGCTTTAG+AGG - chr3.1:91741481-91741500 MS.gene014300:intron 45.0%
AGACCAGCATCTCCTTATGT+TGG - chr3.1:91740898-91740917 MS.gene014300:intron 45.0%
AGCCATAGGAAAGTGGTTGT+TGG + chr3.1:91740969-91740988 None:intergenic 45.0%
AGGTGTGTCAAGTGTCCAAT+AGG + chr3.1:91740466-91740485 None:intergenic 45.0%
ATCAGATTGTGCCCTATGGT+GGG - chr3.1:91741828-91741847 MS.gene014300:intron 45.0%
ATCTATGTGTCGGACCCTAT+TGG - chr3.1:91740448-91740467 MS.gene014300:intron 45.0%
ATGCAGGGTTATACAGTACC+AGG - chr3.1:91741803-91741822 MS.gene014300:intron 45.0%
CAACTTCTACCGTGTCCAAT+AGG - chr3.1:91741649-91741668 MS.gene014300:intron 45.0%
CAGGCACACCATATATCTGA+AGG + chr3.1:91741709-91741728 None:intergenic 45.0%
CATTATTATATGCAGGGGCC+GGG - chr3.1:91742247-91742266 MS.gene014300:intron 45.0%
CCACTTAGTGAGATAAGGCT+TGG + chr3.1:91741328-91741347 None:intergenic 45.0%
CCTCAGTTTATGCAAGGTAG+CGG - chr3.1:91743022-91743041 MS.gene014300:CDS 45.0%
CTATGGCTATCAACAGGGAA+TGG - chr3.1:91740981-91741000 MS.gene014300:intron 45.0%
CTCGAACTTGATCCTGAACT+TGG + chr3.1:91740075-91740094 None:intergenic 45.0%
CTCTTGCCTTTCCTGTGTTA+TGG - chr3.1:91741102-91741121 MS.gene014300:intron 45.0%
CTTCAGATATATGGTGTGCC+TGG - chr3.1:91741707-91741726 MS.gene014300:intron 45.0%
CTTCCAACATAAGGAGATGC+TGG + chr3.1:91740904-91740923 None:intergenic 45.0%
GCATTATTATATGCAGGGGC+CGG - chr3.1:91742246-91742265 MS.gene014300:intron 45.0%
GCCCTTCTACCATCAATAAC+AGG + chr3.1:91740658-91740677 None:intergenic 45.0%
GCTAGGATATGGGACTTGAA+TGG + chr3.1:91741891-91741910 None:intergenic 45.0%
GCTTGACCCAATTGTCCATA+AGG + chr3.1:91741755-91741774 None:intergenic 45.0%
GGACACGGTAGAAGTTGAAA+AGG + chr3.1:91741646-91741665 None:intergenic 45.0%
GGGAATAGAGGATGGGAAAA+AGG + chr3.1:91742441-91742460 None:intergenic 45.0%
GGTATGTACAACCCTTATGC+TGG - chr3.1:91741671-91741690 MS.gene014300:intron 45.0%
GGTGTGTCAAGTGTCCAATA+GGG + chr3.1:91740465-91740484 None:intergenic 45.0%
TATCCTCCTTATGGGTGAGT+GGG - chr3.1:91741006-91741025 MS.gene014300:intron 45.0%
TGCACAATGCAGATGTGGTT+AGG + chr3.1:91741449-91741468 None:intergenic 45.0%
TGCTAGTATGATCAACACGG+TGG + chr3.1:91740513-91740532 None:intergenic 45.0%
TGTTCCTTCCTACCAAACAC+AGG - chr3.1:91742411-91742430 MS.gene014300:CDS 45.0%
TTAGGAACACCTTACCCACA+TGG + chr3.1:91741431-91741450 None:intergenic 45.0%
TTATCCTCCTTATGGGTGAG+TGG - chr3.1:91741005-91741024 MS.gene014300:intron 45.0%
! CAGGATCAAGTTCGAGTTCT+GGG - chr3.1:91740079-91740098 MS.gene014300:CDS 45.0%
! CCAAGCCTTATCTCACTAAG+TGG - chr3.1:91741325-91741344 MS.gene014300:CDS 45.0%
! CCGTGTTGATCATACTAGCA+TGG - chr3.1:91740513-91740532 MS.gene014300:intron 45.0%
! TCAGGATCAAGTTCGAGTTC+TGG - chr3.1:91740078-91740097 MS.gene014300:CDS 45.0%
! TCCCGAGATTTGGTAATCAC+TGG - chr3.1:91741280-91741299 MS.gene014300:CDS 45.0%
! TCTCATCAGATCAGAAGTGC+CGG - chr3.1:91740485-91740504 MS.gene014300:intron 45.0%
! TGCATGGAATTGGAGGGTAT+AGG - chr3.1:91740582-91740601 MS.gene014300:intron 45.0%
! TTTTCCCATCCTCTATTCCC+GGG - chr3.1:91742441-91742460 MS.gene014300:CDS 45.0%
!! CATTCCCTGTTGATAGCCAT+AGG + chr3.1:91740983-91741002 None:intergenic 45.0%
!! TTTTTGGTCAGGTAGCCTAG+TGG + chr3.1:91742322-91742341 None:intergenic 45.0%
AACAGGACTTGGATCAGCAC+AGG + chr3.1:91740641-91740660 None:intergenic 50.0%
AAGAACACCGGACGATCCAA+AGG - chr3.1:91740246-91740265 MS.gene014300:intron 50.0%
ACCAACTGAGCTATGCTCAC+AGG + chr3.1:91742218-91742237 None:intergenic 50.0%
ACGCCCCACTTAGTGAGATA+AGG + chr3.1:91741333-91741352 None:intergenic 50.0%
ACTAAGTGGGGCGTAATCAC+TGG - chr3.1:91741339-91741358 MS.gene014300:CDS 50.0%
AGGACTGTACCGCTAGGATA+TGG + chr3.1:91741902-91741921 None:intergenic 50.0%
CAATTGGGTCAAGCTGTTCC+TGG - chr3.1:91741761-91741780 MS.gene014300:intron 50.0%
CATCAGATTGTGCCCTATGG+TGG - chr3.1:91741827-91741846 MS.gene014300:intron 50.0%
CCGCTACCTTGCATAAACTG+AGG + chr3.1:91743025-91743044 None:intergenic 50.0%
GCTCACAAAACCGTAGCCTT+TGG + chr3.1:91740265-91740284 None:intergenic 50.0%
GGACTGTACCGCTAGGATAT+GGG + chr3.1:91741901-91741920 None:intergenic 50.0%
GGATATGGGACTTGAATGGC+AGG + chr3.1:91741887-91741906 None:intergenic 50.0%
GGCACTTCTGATCTGATGAG+AGG + chr3.1:91740486-91740505 None:intergenic 50.0%
GGTCATCAGATTGTGCCCTA+TGG - chr3.1:91741824-91741843 MS.gene014300:intron 50.0%
GTAGCCATAACCTCCAACGT+AGG + chr3.1:91740947-91740966 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+AGG - chr3.1:91742218-91742237 MS.gene014300:intron 50.0%
TAGGGCACAATCTGATGACC+TGG + chr3.1:91741824-91741843 None:intergenic 50.0%
TATGATCAACACGGTGGCAC+CGG + chr3.1:91740507-91740526 None:intergenic 50.0%
TATTCACATGGGAGAGGGGT+GGG + chr3.1:91742177-91742196 None:intergenic 50.0%
TCCTGTGAGCATAGCTCAGT+TGG - chr3.1:91742214-91742233 MS.gene014300:CDS 50.0%
TTATTCACATGGGAGAGGGG+TGG + chr3.1:91742178-91742197 None:intergenic 50.0%
TTGATCCTGAACTTGGACCC+TGG + chr3.1:91740068-91740087 None:intergenic 50.0%
! GAACGTGGGTTTTCCATTCC+TGG - chr3.1:91742139-91742158 MS.gene014300:CDS 50.0%
!! AATTGTGGTTGGCCTGGAAC+TGG + chr3.1:91742992-91743011 None:intergenic 50.0%
!! CTTCGTTGGTGGATTGGCAT+GGG - chr3.1:91740149-91740168 MS.gene014300:intron 50.0%
!! TCTTCGTTGGTGGATTGGCA+TGG - chr3.1:91740148-91740167 MS.gene014300:intron 50.0%
AACCTCCAACGTAGGCACCA+CGG + chr3.1:91740939-91740958 None:intergenic 55.0%
ACCGGACGATCCAAAGGCTA+CGG - chr3.1:91740252-91740271 MS.gene014300:intron 55.0%
ACCGTAGCCTTTGGATCGTC+CGG + chr3.1:91740256-91740275 None:intergenic 55.0%
AGCGGTCCTGACCAAACAGA+TGG - chr3.1:91743040-91743059 MS.gene014300:CDS 55.0%
CAGCATCCCACTCACCCATA+AGG + chr3.1:91741015-91741034 None:intergenic 55.0%
CATCCCACTCACCCATAAGG+AGG + chr3.1:91741012-91741031 None:intergenic 55.0%
CGTGGACCCCCAATCTCATA+TGG - chr3.1:91740709-91740728 MS.gene014300:intron 55.0%
GCATACCAGGGTCCAAGTTC+AGG - chr3.1:91740060-91740079 MS.gene014300:CDS 55.0%
GCTGTATAACCATGACCGCC+AGG + chr3.1:91741782-91741801 None:intergenic 55.0%
GGAATTGCTGCACCAGTTCC+AGG - chr3.1:91742977-91742996 MS.gene014300:CDS 55.0%
GGTGACTTTCCGTGATCCAG+AGG - chr3.1:91740603-91740622 MS.gene014300:intron 55.0%
GGTGCCTACGTTGGAGGTTA+TGG - chr3.1:91740940-91740959 MS.gene014300:intron 55.0%
TATGAGATTGGGGGTCCACG+TGG + chr3.1:91740709-91740728 None:intergenic 55.0%
TCAGAACGTGGGGAACACAC+TGG - chr3.1:91742098-91742117 MS.gene014300:intron 55.0%
TCCTAGCAGCCTCTGGATCA+CGG + chr3.1:91740615-91740634 None:intergenic 55.0%
TGGGACTTGAATGGCAGGCA+CGG + chr3.1:91741882-91741901 None:intergenic 55.0%
TTGGGTCAAGCTGTTCCTGG+CGG - chr3.1:91741764-91741783 MS.gene014300:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+AGG + chr3.1:91742280-91742299 None:intergenic 55.0%
! TGTGACTCGGGCCATTCCTT+TGG - chr3.1:91741945-91741964 MS.gene014300:intron 55.0%
ACCTCCAACGTAGGCACCAC+GGG + chr3.1:91740938-91740957 None:intergenic 60.0%
CAAGCTGTTCCTGGCGGTCA+TGG - chr3.1:91741770-91741789 MS.gene014300:intron 60.0%
GGAAGTTTGCAACCAGCCCG+TGG - chr3.1:91740919-91740938 MS.gene014300:intron 60.0%
GGAATGGCCCGAGTCACAAG+TGG + chr3.1:91741943-91741962 None:intergenic 60.0%
GGACAGAGGACTGTACCGCT+AGG + chr3.1:91741908-91741927 None:intergenic 60.0%
GGGACTTGAATGGCAGGCAC+GGG + chr3.1:91741881-91741900 None:intergenic 60.0%
GGTGTCCGAGGTTCGAAACC+CGG + chr3.1:91742268-91742287 None:intergenic 60.0%
TCCGTGATCCAGAGGCTGCT+AGG - chr3.1:91740611-91740630 MS.gene014300:intron 60.0%
AGGGGCCGGGTTTCGAACCT+CGG - chr3.1:91742260-91742279 MS.gene014300:intron 65.0%
CAGGCTCTCCTAGCAGCCTC+TGG + chr3.1:91740622-91740641 None:intergenic 65.0%
GCTTCGCATGGTCGTCCACG+TGG - chr3.1:91740691-91740710 MS.gene014300:intron 65.0%
CCAACGTAGGCACCACGGGC+TGG + chr3.1:91740934-91740953 None:intergenic 70.0%
CCAGCCCGTGGTGCCTACGT+TGG - chr3.1:91740931-91740950 MS.gene014300:intron 70.0%
GCCCGTGGTGCCTACGTTGG+AGG - chr3.1:91740934-91740953 MS.gene014300:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 91740057 91743066 91740057 ID=MS.gene014300
chr3.1 mRNA 91740057 91743066 91740057 ID=MS.gene014300.t1;Parent=MS.gene014300
chr3.1 exon 91742845 91743066 91742845 ID=MS.gene014300.t1.exon1;Parent=MS.gene014300.t1
chr3.1 CDS 91742845 91743066 91742845 ID=cds.MS.gene014300.t1;Parent=MS.gene014300.t1
chr3.1 exon 91742393 91742519 91742393 ID=MS.gene014300.t1.exon2;Parent=MS.gene014300.t1
chr3.1 CDS 91742393 91742519 91742393 ID=cds.MS.gene014300.t1;Parent=MS.gene014300.t1
chr3.1 exon 91742104 91742233 91742104 ID=MS.gene014300.t1.exon3;Parent=MS.gene014300.t1
chr3.1 CDS 91742104 91742233 91742104 ID=cds.MS.gene014300.t1;Parent=MS.gene014300.t1
chr3.1 exon 91741542 91741578 91741542 ID=MS.gene014300.t1.exon4;Parent=MS.gene014300.t1
chr3.1 CDS 91741542 91741578 91741542 ID=cds.MS.gene014300.t1;Parent=MS.gene014300.t1
chr3.1 exon 91741212 91741452 91741212 ID=MS.gene014300.t1.exon5;Parent=MS.gene014300.t1
chr3.1 CDS 91741212 91741452 91741212 ID=cds.MS.gene014300.t1;Parent=MS.gene014300.t1
chr3.1 exon 91740057 91740145 91740057 ID=MS.gene014300.t1.exon6;Parent=MS.gene014300.t1
chr3.1 CDS 91740057 91740145 91740057 ID=cds.MS.gene014300.t1;Parent=MS.gene014300.t1
Gene Sequence

>MS.gene014300

ATGGCATACCAGGGTCCAAGTTCAGGATCAAGTTCGAGTTCTGGGTTTCAATTGTTGAATTCTCCTTTTGGAGATACTACTTATACTAAAGTCTTCGTTGGTGGATTGGCATGGGAGACTCAGAGTGAAACTATGCGCCGTTACTTTGAACAATTTGGAGATATTCTTGAAGCCGTCGTCATCACTGATAAGAACACCGGACGATCCAAAGGCTACGGTTTTGTGAGCATCTTTGCTTTTATCAATTCATTTATTAGTTGTTGACATTACTATTACTACCCTATTTCTTTCTTTGTTTATATTCTATCATATAAGGCTATAACTCATTTTATTACCAAAACATTGTTGAACATTGTAATTTGAGAAAATGATGACATGGAATCACATATATATCTATGTGTCGGACCCTATTGGACACTTGACACACCTCTCATCAGATCAGAAGTGCCGGTGCCACCGTGTTGATCATACTAGCATGGTTGCATTTTTTTATTTACTATAGAATGACTTGGTTTCTATCTTATATGCATGGAATTGGAGGGTATAGGTGACTTTCCGTGATCCAGAGGCTGCTAGGAGAGCCTGTGCTGATCCAAGTCCTGTTATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCGCATGGTCGTCCACGTGGACCCCCAATCTCATATGGTATGCTATTATTTCTTAACAAATGAGTTTATTCTCAAGTGATGTTATATTATTCTTTGATATGCATAGCAGTCTGCTGCAACTTGAAGTTTCCAGAATACTCTTCCTGCATAGAATATACATTGCTTCTATTTTCTGATTTCTTCTTATCTTTTATAGGACGGGTAAGACCAGCATCTCCTTATGTTGGAAGTTTGCAACCAGCCCGTGGTGCCTACGTTGGAGGTTATGGCTACCAACAACCACTTTCCTATGGCTATCAACAGGGAATGGTTTATCCTCCTTATGGGTGAGTGGGATGCTGTTGCACACTATTGCAAAAACTGGATTTGAAGATTATTTTCACCGTCAATCTGCTAATAATAATAATGCTCTTGCCTTTCCTGTGTTATGGTTCTTTGTGTCCATGCTTATTTTAGCAGTTACATAACTCTTTTTGAACCCAGTTATCGTGTTTTTTTGACTGGTATATGTCAGTGATGAGGTCAACTAGACCTATACAACATATTCTTGCAAGTACTTGATTAGTAGTTAGTTAGGAGATGAAAATCCCGAGATTTGGTAATCACTGGTCCACTACAACAACAACAACAACCAAGCCTTATCTCACTAAGTGGGGCGTAATCACTGGTCCACTGTATATGGAAAACCTATGTCAATTGGATGTAATAAACTAATGACCATTTAATATTAGTCTCCATGTGGGTAAGGTGTTCCTAACCACATCTGCATTGTGCATCTAAATGTATCACGCCAGAATCATGCTTTAGAGGTGATCTTTTCAACATTATATTTGGTTGTTTTATCTTTTCAGGTATACGGCATATGGACCTGAATACGTATACCCACAGGTCATATCAGTTTTTTTTTTATTTGGCTTAGGATAAATGTCTATTATTTGTGAAACGCTGACCTTTTCAACTTCTACCGTGTCCAATAGGGTATGTACAACCCTTATGCTGGTCAACAACAGTACCTTCAGATATATGGTGTGCCTGGTGCGATGAATACAACTATTTATCCTTATGGACAATTGGGTCAAGCTGTTCCTGGCGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGGTCCAATGTTAATGCAATAACAACTTCACCCGTGCCTGCCATTCAAGTCCCATATCCTAGCGGTACAGTCCTCTGTCCAAGAAAGAATTTCCACTTGTGACTCGGGCCATTCCTTTGGAATAACTTTCCCAGGAAAACAATAATGATAATTTTATTCCTAGGATTTTTTCAAAGAAATGAACCATTACATTGATAGACCTTAAGCCTCATTACTCACAAAAAAGGAAACCGTTACATTAAATAATTTATCAGAACGTGGGGAACACACTGGTAAAATGAGTTTTGCTCTGAACGTGGGTTTTCCATTCCTGGTAATAGAATTTTCCCACCCCTCTCCCATGTGAATAAAAATGACTAGAACATGTCCTGTGAGCATAGCTCAGTTGGTAGGACAATGCATTATTATATGCAGGGGCCGGGTTTCGAACCTCGGACACCCCACTTATTCACCTTATAAGGTGAATTCTAGCCACTAGGCTACCTGACCAAAAAAAAAAAAATTTACTAGAACATGGGTTAAGTAGATTCCTCGGTATTATTTATTCCTAGGCATATTATTTTTGTTCCTTCCTACCAAACACAGGAATTCCTTTTTCCCATCCTCTATTCCCGGGAATTTATATTTTATTTTTTTATTTCTGAAACAAATGCTCCCTTTTTGTTTATGAACAGCCATCTTTGGTGGATATTCTTTGAGAAACAAAAGCCCATATATATTGGAATTAACATTCATTTGAAAACATATTAGCAAATAACCTTCAATTCTTAACAAGCATTGATTGGCCAGATCACATACACTTATCAGCTGTTGGTATATAAATAAATGAGATTAATGAATGATACGACATATGTAGGCAATTTCAGTTGTCAAACCCTAAATTTATGTACAAAATTAAGGGTTTTGTAATATATGATAGAAGGTTGGGTTTATTTAATTAAAAAATATAGGTAATTGAAGTTCTGATCAACAGGAAAGTAGCTAGTCTGTAAAGAATGGAGATTCGTTTTATATGTACAGTGTTGTAAGATTGCATATAGAGCAAGTCATTAAAATCTATTGATTATTATTTAGCACAAAACTTTAAATTCTGTGCAAATAGGTGTGATTCGTAAGTATTTGATTTTCAGGAATTGCTGCACCAGTTCCAGGCCAACCACAATTTATTGTTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGATGGTTGA
Protein sequence

>MS.gene014300.t1

MAYQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQGMYNPYAGQQQYLQIYGVPGAMNTTIYPYGQLGQAVPGGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPVPAIQVPYPSGIAAPVPGQPQFIVSPQFMQGSGPDQTDG