Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014568.t1 | RHN65795.1 | 77.5 | 386 | 87 | 0 | 1 | 386 | 54 | 439 | 4.10E-163 | 584.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014568.t1 | Q9S7T8 | 54.9 | 390 | 172 | 4 | 1 | 386 | 1 | 390 | 1.3e-117 | 424.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014568.t1 | G7IW05 | 77.5 | 386 | 87 | 0 | 1 | 386 | 1 | 386 | 2.9e-163 | 584.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045585 | MS.gene014568 | PPI |
| MS.gene031697 | MS.gene014568 | PPI |
| MS.gene065944 | MS.gene014568 | PPI |
| MS.gene065945 | MS.gene014568 | PPI |
| MS.gene006610 | MS.gene014568 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014568.t1 | MTR_3g018740 | 77.461 | 386 | 87 | 0 | 1 | 386 | 1 | 386 | 0.0 | 600 |
| MS.gene014568.t1 | MTR_3g101010 | 75.641 | 390 | 92 | 2 | 1 | 388 | 1 | 389 | 0.0 | 569 |
| MS.gene014568.t1 | MTR_4g045707 | 69.870 | 385 | 115 | 1 | 4 | 388 | 5 | 388 | 0.0 | 530 |
| MS.gene014568.t1 | MTR_8g027395 | 68.653 | 386 | 118 | 2 | 3 | 388 | 15 | 397 | 0.0 | 530 |
| MS.gene014568.t1 | MTR_2g045980 | 70.256 | 390 | 108 | 3 | 1 | 386 | 1 | 386 | 0.0 | 528 |
| MS.gene014568.t1 | MTR_2g046030 | 69.487 | 390 | 111 | 3 | 1 | 386 | 1 | 386 | 0.0 | 526 |
| MS.gene014568.t1 | MTR_3g101030 | 66.917 | 399 | 109 | 5 | 10 | 388 | 34 | 429 | 0.0 | 514 |
| MS.gene014568.t1 | MTR_3g101180 | 65.736 | 394 | 122 | 4 | 5 | 386 | 6 | 398 | 6.31e-179 | 503 |
| MS.gene014568.t1 | MTR_8g027420 | 66.321 | 386 | 116 | 3 | 3 | 388 | 4 | 375 | 1.46e-178 | 501 |
| MS.gene014568.t1 | MTR_8g461160 | 67.263 | 391 | 121 | 3 | 2 | 386 | 3 | 392 | 2.97e-178 | 501 |
| MS.gene014568.t1 | MTR_3g048000 | 66.841 | 383 | 105 | 5 | 6 | 386 | 28 | 390 | 5.62e-178 | 501 |
| MS.gene014568.t1 | MTR_7g050810 | 64.213 | 394 | 130 | 4 | 3 | 388 | 14 | 404 | 3.77e-174 | 491 |
| MS.gene014568.t1 | MTR_7g451890 | 62.500 | 392 | 140 | 3 | 3 | 388 | 12 | 402 | 1.73e-173 | 489 |
| MS.gene014568.t1 | MTR_7g050750 | 62.245 | 392 | 141 | 3 | 3 | 388 | 6 | 396 | 2.57e-172 | 486 |
| MS.gene014568.t1 | MTR_3g101130 | 63.198 | 394 | 134 | 4 | 1 | 388 | 1 | 389 | 2.87e-171 | 483 |
| MS.gene014568.t1 | MTR_7g047780 | 63.010 | 392 | 138 | 3 | 3 | 388 | 12 | 402 | 9.00e-171 | 483 |
| MS.gene014568.t1 | MTR_4g088525 | 66.484 | 364 | 119 | 2 | 24 | 387 | 8 | 368 | 7.35e-170 | 479 |
| MS.gene014568.t1 | MTR_4g088535 | 66.227 | 379 | 109 | 4 | 5 | 383 | 7 | 366 | 7.47e-167 | 472 |
| MS.gene014568.t1 | MTR_3g015620 | 64.433 | 388 | 107 | 4 | 5 | 386 | 16 | 378 | 4.94e-162 | 459 |
| MS.gene014568.t1 | MTR_3g101050 | 63.731 | 386 | 112 | 6 | 8 | 386 | 32 | 396 | 3.17e-158 | 451 |
| MS.gene014568.t1 | MTR_3g102920 | 59.211 | 380 | 114 | 7 | 12 | 386 | 65 | 408 | 3.62e-140 | 405 |
| MS.gene014568.t1 | MTR_3g101190 | 54.639 | 388 | 100 | 4 | 1 | 388 | 1 | 312 | 6.31e-135 | 388 |
| MS.gene014568.t1 | MTR_3g018747 | 74.903 | 259 | 50 | 2 | 129 | 386 | 9 | 253 | 8.75e-133 | 380 |
| MS.gene014568.t1 | MTR_3g101200 | 54.897 | 388 | 145 | 4 | 3 | 386 | 29 | 390 | 1.79e-129 | 377 |
| MS.gene014568.t1 | MTR_3g111160 | 89.423 | 208 | 22 | 0 | 181 | 388 | 13 | 220 | 8.65e-127 | 364 |
| MS.gene014568.t1 | MTR_3g100995 | 68.504 | 254 | 76 | 2 | 136 | 388 | 14 | 264 | 4.56e-122 | 354 |
| MS.gene014568.t1 | MTR_7g050830 | 57.278 | 316 | 102 | 3 | 3 | 296 | 14 | 318 | 9.12e-118 | 345 |
| MS.gene014568.t1 | MTR_3g100010 | 57.372 | 312 | 85 | 4 | 30 | 308 | 42 | 338 | 2.97e-115 | 339 |
| MS.gene014568.t1 | MTR_3g015760 | 64.751 | 261 | 85 | 3 | 129 | 386 | 23 | 279 | 6.61e-107 | 316 |
| MS.gene014568.t1 | MTR_3g100520 | 63.182 | 220 | 69 | 2 | 170 | 388 | 1 | 209 | 9.14e-90 | 270 |
| MS.gene014568.t1 | MTR_3g111150 | 77.401 | 177 | 16 | 2 | 7 | 183 | 1 | 153 | 2.21e-88 | 265 |
| MS.gene014568.t1 | MTR_2g046410 | 67.805 | 205 | 61 | 2 | 186 | 386 | 144 | 347 | 6.40e-87 | 267 |
| MS.gene014568.t1 | MTR_3g099970 | 63.500 | 200 | 55 | 2 | 126 | 325 | 17 | 198 | 8.59e-84 | 254 |
| MS.gene014568.t1 | MTR_3g101110 | 56.780 | 236 | 71 | 2 | 132 | 362 | 71 | 280 | 1.77e-81 | 251 |
| MS.gene014568.t1 | MTR_3g114310 | 39.043 | 397 | 222 | 11 | 6 | 388 | 20 | 410 | 1.89e-79 | 250 |
| MS.gene014568.t1 | MTR_3g101020 | 58.289 | 187 | 50 | 2 | 203 | 388 | 1 | 160 | 3.76e-64 | 202 |
| MS.gene014568.t1 | MTR_3g102870 | 64.103 | 156 | 55 | 1 | 192 | 347 | 1 | 155 | 2.60e-63 | 201 |
| MS.gene014568.t1 | MTR_3g101150 | 63.291 | 158 | 51 | 3 | 235 | 386 | 1 | 157 | 1.49e-58 | 188 |
| MS.gene014568.t1 | MTR_3g100990 | 59.091 | 154 | 62 | 1 | 1 | 154 | 1 | 153 | 1.37e-51 | 180 |
| MS.gene014568.t1 | MTR_4g093550 | 66.667 | 87 | 29 | 0 | 2 | 88 | 3 | 89 | 4.30e-31 | 114 |
| MS.gene014568.t1 | MTR_6g046890 | 60.714 | 84 | 30 | 1 | 13 | 96 | 7 | 87 | 1.78e-24 | 98.2 |
| MS.gene014568.t1 | MTR_3g101140 | 61.842 | 76 | 25 | 2 | 316 | 388 | 42 | 116 | 2.74e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014568.t1 | AT1G47710 | 54.872 | 390 | 172 | 4 | 1 | 386 | 1 | 390 | 5.77e-152 | 434 |
| MS.gene014568.t1 | AT1G47710 | 54.872 | 390 | 172 | 4 | 1 | 386 | 28 | 417 | 4.11e-151 | 433 |
| MS.gene014568.t1 | AT3G45220 | 48.731 | 394 | 189 | 5 | 1 | 385 | 1 | 390 | 2.72e-127 | 372 |
| MS.gene014568.t1 | AT2G25240 | 49.100 | 389 | 187 | 6 | 1 | 385 | 1 | 382 | 3.36e-124 | 364 |
| MS.gene014568.t1 | AT2G26390 | 49.377 | 401 | 172 | 8 | 1 | 385 | 1 | 386 | 8.39e-124 | 363 |
| MS.gene014568.t1 | AT1G64030 | 45.685 | 394 | 182 | 7 | 1 | 385 | 1 | 371 | 6.77e-106 | 317 |
| MS.gene014568.t1 | AT2G14540 | 43.878 | 392 | 190 | 6 | 1 | 385 | 29 | 397 | 2.83e-102 | 308 |
| MS.gene014568.t1 | AT1G62170 | 42.025 | 395 | 194 | 6 | 1 | 385 | 62 | 431 | 1.60e-98 | 300 |
| MS.gene014568.t1 | AT2G35580 | 43.609 | 399 | 183 | 11 | 1 | 385 | 1 | 371 | 8.88e-97 | 293 |
| MS.gene014568.t1 | AT1G62170 | 38.785 | 428 | 194 | 7 | 1 | 385 | 62 | 464 | 7.49e-92 | 284 |
| MS.gene014568.t1 | AT1G64010 | 48.387 | 217 | 89 | 2 | 170 | 385 | 1 | 195 | 9.49e-65 | 205 |
| MS.gene014568.t1 | AT1G64010 | 47.525 | 202 | 83 | 2 | 185 | 385 | 2 | 181 | 3.55e-57 | 185 |
| MS.gene014568.t1 | AT1G63280 | 55.085 | 118 | 49 | 2 | 126 | 241 | 5 | 120 | 9.98e-37 | 130 |
| MS.gene014568.t1 | AT1G62160 | 42.000 | 200 | 87 | 4 | 192 | 385 | 42 | 218 | 4.05e-33 | 124 |
| MS.gene014568.t1 | AT1G51330 | 55.914 | 93 | 41 | 0 | 130 | 222 | 32 | 124 | 2.05e-28 | 110 |
| MS.gene014568.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 10 | 119 | 10 | 120 | 1.29e-13 | 67.4 |
Find 78 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCATTGTACTTTAG+AGG | 0.228573 | 3.3:+91882494 | MS.gene014568:CDS |
| TTCACTTCCTTACGCACTTC+TGG | 0.250709 | 3.3:-91882386 | None:intergenic |
| TTATCTCCACCTTTCTTATA+AGG | 0.278181 | 3.3:-91882662 | None:intergenic |
| GTCTGACTATAAGGCCTCTT+TGG | 0.314575 | 3.3:+91881786 | MS.gene014568:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.316269 | 3.3:-91882436 | None:intergenic |
| GTTGAGATGATCAGTTGATT+TGG | 0.329351 | 3.3:-91881629 | None:intergenic |
| AATCGTGTCGTCTGACTATA+AGG | 0.332269 | 3.3:+91881777 | MS.gene014568:CDS |
| TTCTGAGTGAAACTCTTGTT+TGG | 0.381738 | 3.3:-91881471 | None:intergenic |
| CAGGTGCTCAATCCACTTAC+CGG | 0.382564 | 3.3:+91883136 | MS.gene014568:CDS |
| ACCGGAACAATCATCTTTGT+TGG | 0.389749 | 3.3:+91883112 | MS.gene014568:CDS |
| CTTCGTCTTCCTTATAAGAA+AGG | 0.393399 | 3.3:+91882653 | MS.gene014568:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.393434 | 3.3:+91882707 | MS.gene014568:CDS |
| CTTCTTATTGCTTGTCATGA+AGG | 0.402863 | 3.3:-91882597 | None:intergenic |
| TTCCGTTGATTTCATATTCA+AGG | 0.404811 | 3.3:+91881810 | MS.gene014568:CDS |
| CGACCTTTGTCTTTCTCAAA+AGG | 0.405354 | 3.3:+91882781 | MS.gene014568:CDS |
| TGACTGAGCTGCCATTTAGA+AGG | 0.423575 | 3.3:-91882568 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.3:-91881750 | None:intergenic |
| TCTCCTTCGTCGATGGTGTA+TGG | 0.430979 | 3.3:+91881716 | MS.gene014568:CDS |
| AACAATCATCTTTGTTGGAC+AGG | 0.440935 | 3.3:+91883117 | MS.gene014568:CDS |
| TGCGTAAGGAAGTGAACATA+TGG | 0.443212 | 3.3:+91882393 | MS.gene014568:CDS |
| TCCAACAAAGATGATTGTTC+CGG | 0.452329 | 3.3:-91883113 | None:intergenic |
| GTGTAGGAACTCAGATTTAG+AGG | 0.453010 | 3.3:-91882756 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.3:+91882977 | MS.gene014568:CDS |
| CTCTCCGACGCTGCTCCTGC+CGG | 0.459274 | 3.3:+91881682 | MS.gene014568:CDS |
| GTAAAACCTCCAGCTGAGAA+AGG | 0.471088 | 3.3:-91882890 | None:intergenic |
| GTGCTCAGCATGATCGCTGC+TGG | 0.475334 | 3.3:+91881562 | MS.gene014568:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.3:-91881749 | None:intergenic |
| GAGTGAAACTCTTGTTTGGT+TGG | 0.477610 | 3.3:-91881467 | None:intergenic |
| CACCAAGATCACCCGGTAAG+TGG | 0.479483 | 3.3:-91883148 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.3:-91883082 | None:intergenic |
| ATTAAAGAACTTCTTCCTCC+AGG | 0.485712 | 3.3:+91882440 | MS.gene014568:CDS |
| TTTGGTTGGTGATTGACTCA+TGG | 0.489862 | 3.3:-91881453 | None:intergenic |
| TTCTTATTGCTTGTCATGAA+GGG | 0.490256 | 3.3:-91882596 | None:intergenic |
| AGACGACACGATTTGCTTGA+AGG | 0.492806 | 3.3:-91881767 | None:intergenic |
| ATGATCGCTGCTGGCTCTGA+TGG | 0.495156 | 3.3:+91881571 | MS.gene014568:CDS |
| GTTAAGCTATCAACTGATCC+TGG | 0.502275 | 3.3:-91882458 | None:intergenic |
| GAGAGTCGAGGTCCACCGGC+AGG | 0.505461 | 3.3:-91881697 | None:intergenic |
| ATGGTGGACTCTTCTCTTGT+GGG | 0.507953 | 3.3:+91882917 | MS.gene014568:CDS |
| GAAATATGTAAGTTACAGAA+AGG | 0.511718 | 3.3:-91882946 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.3:-91883081 | None:intergenic |
| CTGATTAGAGAAGATTTGAC+CGG | 0.517828 | 3.3:+91883094 | MS.gene014568:CDS |
| CACTGCTGCAATATTATCCA+AGG | 0.518182 | 3.3:+91883018 | MS.gene014568:CDS |
| CCTCGACTCTCCTTCGTCGA+TGG | 0.525076 | 3.3:+91881709 | MS.gene014568:CDS |
| GATGATCAGTTGATTTGGAT+CGG | 0.528836 | 3.3:-91881624 | None:intergenic |
| AGATGGAAAGCTAAAGCCCT+TGG | 0.532842 | 3.3:-91883035 | None:intergenic |
| GAAGGAGAGTCGAGGTCCAC+CGG | 0.533066 | 3.3:-91881701 | None:intergenic |
| AGCACAACTTGCAGCGACAA+TGG | 0.534900 | 3.3:-91881544 | None:intergenic |
| GCTACAAAGTCTAGTTGAGA+TGG | 0.536062 | 3.3:-91883052 | None:intergenic |
| TCTCGTATGCTGAAGGAGCT+AGG | 0.541126 | 3.3:+91882857 | MS.gene014568:CDS |
| AATGGTGGACTCTTCTCTTG+TGG | 0.543680 | 3.3:+91882916 | MS.gene014568:CDS |
| CATTGTACTTTAGAGGAGCA+TGG | 0.546324 | 3.3:+91882501 | MS.gene014568:CDS |
| GACACGATTTGCTTGAAGGA+AGG | 0.561491 | 3.3:-91881763 | None:intergenic |
| CGTCTTCCTTATAAGAAAGG+TGG | 0.568369 | 3.3:+91882656 | MS.gene014568:CDS |
| TTTGAGAAAGACAAAGGTCG+TGG | 0.572436 | 3.3:-91882778 | None:intergenic |
| AAAGACAAAGGTCGTGGTGT+AGG | 0.575620 | 3.3:-91882772 | None:intergenic |
| TCCGACGCTGCTCCTGCCGG+TGG | 0.579915 | 3.3:+91881685 | MS.gene014568:CDS |
| TTAGGCTCCAGAAGTGCGTA+AGG | 0.581412 | 3.3:+91882379 | MS.gene014568:intron |
| TACCTTGAATATGAAATCAA+CGG | 0.585355 | 3.3:-91881812 | None:intergenic |
| TCTAAATGGCAGCTCAGTCA+AGG | 0.587482 | 3.3:+91882571 | MS.gene014568:CDS |
| CTTGGATAATATTGCAGCAG+TGG | 0.588147 | 3.3:-91883017 | None:intergenic |
| TCCACCGGCAGGAGCAGCGT+CGG | 0.589894 | 3.3:-91881686 | None:intergenic |
| GAAATCAACGGAAGCCAAAG+AGG | 0.593112 | 3.3:-91881800 | None:intergenic |
| TGAAACTTCTCGTATGCTGA+AGG | 0.598857 | 3.3:+91882850 | MS.gene014568:CDS |
| TCGAGAAGTTGCTGTCGTGT+AGG | 0.602586 | 3.3:-91881595 | None:intergenic |
| GCGTAAGGAAGTGAACATAT+GGG | 0.604799 | 3.3:+91882394 | MS.gene014568:CDS |
| AGGTGCTCAATCCACTTACC+GGG | 0.607771 | 3.3:+91883137 | MS.gene014568:CDS |
| AGAAGGCGTTGAAGCTGCTG+CGG | 0.611204 | 3.3:+91882994 | MS.gene014568:CDS |
| CAGAAACAAGCTGTGAGGCG+AGG | 0.626579 | 3.3:-91881654 | None:intergenic |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.3:-91883078 | None:intergenic |
| ACAATGCATTAGCAAAGATG+AGG | 0.643645 | 3.3:-91882484 | None:intergenic |
| CACAGCAGAAACAAGCTGTG+AGG | 0.652997 | 3.3:-91881659 | None:intergenic |
| TAGCGATCACCAAGATCACC+CGG | 0.654012 | 3.3:-91883155 | None:intergenic |
| GATCAGTTGATTTGGATCGG+AGG | 0.660817 | 3.3:-91881621 | None:intergenic |
| ACTGCTGCAATATTATCCAA+GGG | 0.662517 | 3.3:+91883019 | MS.gene014568:CDS |
| TATCCATACACCATCGACGA+AGG | 0.669317 | 3.3:-91881719 | None:intergenic |
| TATGCTGAAGGAGCTAGGAG+TGG | 0.677919 | 3.3:+91882862 | MS.gene014568:CDS |
| AAGCTATCAACTGATCCTGG+AGG | 0.720518 | 3.3:-91882455 | None:intergenic |
| CCATCGACGAAGGAGAGTCG+AGG | 0.723381 | 3.3:-91881709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTTAAATTTGATA+TGG | + | chr3.3:91882352-91882371 | MS.gene014568:intron | 10.0% |
| !! | ATTTCATGTTAATTAACTAA+AGG | + | chr3.3:91881939-91881958 | MS.gene014568:intron | 15.0% |
| !!! | TAAATTTGATATGGTTTTTT+AGG | + | chr3.3:91882361-91882380 | MS.gene014568:intron | 15.0% |
| !!! | TCAAATGAAATTTTGAATTT+CGG | - | chr3.3:91882827-91882846 | None:intergenic | 15.0% |
| !! | ATAACACGAAATAAAAATAG+CGG | - | chr3.3:91881877-91881896 | None:intergenic | 20.0% |
| !! | ATGAAATATATATGCAAAGT+CGG | - | chr3.3:91881926-91881945 | None:intergenic | 20.0% |
| !! | TAAAAACTAATTGTTTGTGA+TGG | - | chr3.3:91881970-91881989 | None:intergenic | 20.0% |
| !!! | TAACTCTAAAAAATTTGAAG+AGG | - | chr3.3:91882219-91882238 | None:intergenic | 20.0% |
| !!! | TTATTTCGTGTTATTATTTG+TGG | + | chr3.3:91881883-91881902 | MS.gene014568:intron | 20.0% |
| !!! | TTTTATTTCATTAGCCAATT+TGG | + | chr3.3:91881996-91882015 | MS.gene014568:intron | 20.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.3:91883084-91883103 | None:intergenic | 25.0% |
| ! | GAAATATGTAAGTTACAGAA+AGG | - | chr3.3:91882949-91882968 | None:intergenic | 25.0% |
| ! | TACCTTGAATATGAAATCAA+CGG | - | chr3.3:91881815-91881834 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.3:91883085-91883104 | None:intergenic | 25.0% |
| ! | TGAAATATATATGCAAAGTC+GGG | - | chr3.3:91881925-91881944 | None:intergenic | 25.0% |
| ! | TGTTATTATTTGTGGTGTTT+CGG | + | chr3.3:91881891-91881910 | MS.gene014568:intron | 25.0% |
| ! | TTATGCAAATAGATCATATG+AGG | - | chr3.3:91882333-91882352 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.3:91882977-91882996 | MS.gene014568:CDS | 25.0% |
| !! | ATTGATTTCAGCACAAAATA+GGG | + | chr3.3:91882152-91882171 | MS.gene014568:intron | 25.0% |
| !! | TATGATTTTCACCTTCTAAA+TGG | + | chr3.3:91882557-91882576 | MS.gene014568:CDS | 25.0% |
| !!! | AAATCATTTTTGCTCCAAAT+TGG | - | chr3.3:91882013-91882032 | None:intergenic | 25.0% |
| !!! | AATTGCTGTTTTAGAAACAT+TGG | - | chr3.3:91882128-91882147 | None:intergenic | 25.0% |
| !!! | TATTGATTTCAGCACAAAAT+AGG | + | chr3.3:91882151-91882170 | MS.gene014568:intron | 25.0% |
| !!! | TTGTTTTGAGAACAAATGTT+TGG | - | chr3.3:91881500-91881519 | None:intergenic | 25.0% |
| AAGCTCTTGAAACATATTTC+TGG | + | chr3.3:91882085-91882104 | MS.gene014568:intron | 30.0% | |
| GAAATATATATGCAAAGTCG+GGG | - | chr3.3:91881924-91881943 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.3:91882439-91882458 | None:intergenic | 30.0% | |
| GTTATTATTTGTGGTGTTTC+GGG | + | chr3.3:91881892-91881911 | MS.gene014568:intron | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.3:91883081-91883100 | None:intergenic | 30.0% | |
| TTATCTCCACCTTTCTTATA+AGG | - | chr3.3:91882665-91882684 | None:intergenic | 30.0% | |
| TTCTTATTGCTTGTCATGAA+GGG | - | chr3.3:91882599-91882618 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.3:91882707-91882726 | MS.gene014568:CDS | 30.0% | |
| TTTCTTGATCCTTTAGCATA+CGG | + | chr3.3:91882253-91882272 | MS.gene014568:intron | 30.0% | |
| !! | AAAAATAGCGGATAGATTGT+AGG | - | chr3.3:91881865-91881884 | None:intergenic | 30.0% |
| !! | AAAATAGCGGATAGATTGTA+GGG | - | chr3.3:91881864-91881883 | None:intergenic | 30.0% |
| !! | TTCCGTTGATTTCATATTCA+AGG | + | chr3.3:91881810-91881829 | MS.gene014568:CDS | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.3:91883117-91883136 | MS.gene014568:CDS | 35.0% | |
| ACAATGCATTAGCAAAGATG+AGG | - | chr3.3:91882487-91882506 | None:intergenic | 35.0% | |
| ACTGCTGCAATATTATCCAA+GGG | + | chr3.3:91883019-91883038 | MS.gene014568:CDS | 35.0% | |
| AGCATACATAACCTTTGTGT+TGG | + | chr3.3:91882041-91882060 | MS.gene014568:intron | 35.0% | |
| ATTAAAGAACTTCTTCCTCC+AGG | + | chr3.3:91882440-91882459 | MS.gene014568:CDS | 35.0% | |
| ATTAGTGAAGACCAACACAA+AGG | - | chr3.3:91882055-91882074 | None:intergenic | 35.0% | |
| CTGATTAGAGAAGATTTGAC+CGG | + | chr3.3:91883094-91883113 | MS.gene014568:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.3:91882653-91882672 | MS.gene014568:CDS | 35.0% | |
| CTTCTTATTGCTTGTCATGA+AGG | - | chr3.3:91882600-91882619 | None:intergenic | 35.0% | |
| GCTAATGCATTGTACTTTAG+AGG | + | chr3.3:91882494-91882513 | MS.gene014568:CDS | 35.0% | |
| GTTGAGATGATCAGTTGATT+TGG | - | chr3.3:91881632-91881651 | None:intergenic | 35.0% | |
| TCCAACAAAGATGATTGTTC+CGG | - | chr3.3:91883116-91883135 | None:intergenic | 35.0% | |
| TTCTGAGTGAAACTCTTGTT+TGG | - | chr3.3:91881474-91881493 | None:intergenic | 35.0% | |
| ! | AGCTGGAGGTTTTACAAAAA+TGG | + | chr3.3:91882898-91882917 | MS.gene014568:CDS | 35.0% |
| ! | GACAATCCATCTTTTGCATT+TGG | - | chr3.3:91882716-91882735 | None:intergenic | 35.0% |
| ! | GTCAGCTTTAGTTGAAAAAG+TGG | + | chr3.3:91882733-91882752 | MS.gene014568:CDS | 35.0% |
| ! | TGGAGGTTTTACAAAAATGG+TGG | + | chr3.3:91882901-91882920 | MS.gene014568:CDS | 35.0% |
| ! | TGGGTTGAAAAAGAGACAAA+TGG | + | chr3.3:91882413-91882432 | MS.gene014568:CDS | 35.0% |
| !! | CTTCCTTTTGAGAAAGACAA+AGG | - | chr3.3:91882787-91882806 | None:intergenic | 35.0% |
| !! | CTTGAAACATATTTCTGGAG+TGG | + | chr3.3:91882090-91882109 | MS.gene014568:intron | 35.0% |
| !! | GATGATCAGTTGATTTGGAT+CGG | - | chr3.3:91881627-91881646 | None:intergenic | 35.0% |
| AATCGTGTCGTCTGACTATA+AGG | + | chr3.3:91881777-91881796 | MS.gene014568:CDS | 40.0% | |
| ACCGGAACAATCATCTTTGT+TGG | + | chr3.3:91883112-91883131 | MS.gene014568:CDS | 40.0% | |
| CACTGCTGCAATATTATCCA+AGG | + | chr3.3:91883018-91883037 | MS.gene014568:CDS | 40.0% | |
| CGACCTTTGTCTTTCTCAAA+AGG | + | chr3.3:91882781-91882800 | MS.gene014568:CDS | 40.0% | |
| CGTCTTCCTTATAAGAAAGG+TGG | + | chr3.3:91882656-91882675 | MS.gene014568:CDS | 40.0% | |
| CTTGGATAATATTGCAGCAG+TGG | - | chr3.3:91883020-91883039 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.3:91881752-91881771 | None:intergenic | 40.0% | |
| GCGTAAGGAAGTGAACATAT+GGG | + | chr3.3:91882394-91882413 | MS.gene014568:CDS | 40.0% | |
| GCTACAAAGTCTAGTTGAGA+TGG | - | chr3.3:91883055-91883074 | None:intergenic | 40.0% | |
| GTGTAGGAACTCAGATTTAG+AGG | - | chr3.3:91882759-91882778 | None:intergenic | 40.0% | |
| GTTAAGCTATCAACTGATCC+TGG | - | chr3.3:91882461-91882480 | None:intergenic | 40.0% | |
| TGAAACTTCTCGTATGCTGA+AGG | + | chr3.3:91882850-91882869 | MS.gene014568:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.3:91881753-91881772 | None:intergenic | 40.0% | |
| TGCGTAAGGAAGTGAACATA+TGG | + | chr3.3:91882393-91882412 | MS.gene014568:CDS | 40.0% | |
| TTTGAGAAAGACAAAGGTCG+TGG | - | chr3.3:91882781-91882800 | None:intergenic | 40.0% | |
| ! | CATTGTACTTTAGAGGAGCA+TGG | + | chr3.3:91882501-91882520 | MS.gene014568:CDS | 40.0% |
| ! | GAGTGAAACTCTTGTTTGGT+TGG | - | chr3.3:91881470-91881489 | None:intergenic | 40.0% |
| !! | TTTGGTTGGTGATTGACTCA+TGG | - | chr3.3:91881456-91881475 | None:intergenic | 40.0% |
| AAAGACAAAGGTCGTGGTGT+AGG | - | chr3.3:91882775-91882794 | None:intergenic | 45.0% | |
| AAGCTATCAACTGATCCTGG+AGG | - | chr3.3:91882458-91882477 | None:intergenic | 45.0% | |
| AGATGGAAAGCTAAAGCCCT+TGG | - | chr3.3:91883038-91883057 | None:intergenic | 45.0% | |
| GAAATCAACGGAAGCCAAAG+AGG | - | chr3.3:91881803-91881822 | None:intergenic | 45.0% | |
| GTAAAACCTCCAGCTGAGAA+AGG | - | chr3.3:91882893-91882912 | None:intergenic | 45.0% | |
| GTCTGACTATAAGGCCTCTT+TGG | + | chr3.3:91881786-91881805 | MS.gene014568:CDS | 45.0% | |
| TATCCATACACCATCGACGA+AGG | - | chr3.3:91881722-91881741 | None:intergenic | 45.0% | |
| TCTAAATGGCAGCTCAGTCA+AGG | + | chr3.3:91882571-91882590 | MS.gene014568:CDS | 45.0% | |
| TTCACTTCCTTACGCACTTC+TGG | - | chr3.3:91882389-91882408 | None:intergenic | 45.0% | |
| ! | AGACGACACGATTTGCTTGA+AGG | - | chr3.3:91881770-91881789 | None:intergenic | 45.0% |
| ! | GACACGATTTGCTTGAAGGA+AGG | - | chr3.3:91881766-91881785 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCTCAGCTGG+AGG | + | chr3.3:91882884-91882903 | MS.gene014568:CDS | 45.0% |
| ! | TGACTGAGCTGCCATTTAGA+AGG | - | chr3.3:91882571-91882590 | None:intergenic | 45.0% |
| !! | AATGGTGGACTCTTCTCTTG+TGG | + | chr3.3:91882916-91882935 | MS.gene014568:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+GGG | + | chr3.3:91882917-91882936 | MS.gene014568:CDS | 45.0% |
| !! | GATCAGTTGATTTGGATCGG+AGG | - | chr3.3:91881624-91881643 | None:intergenic | 45.0% |
| !! | GTGGTTTTACCTTTCTCAGC+TGG | + | chr3.3:91882881-91882900 | MS.gene014568:CDS | 45.0% |
| AGCACAACTTGCAGCGACAA+TGG | - | chr3.3:91881547-91881566 | None:intergenic | 50.0% | |
| AGGTGCTCAATCCACTTACC+GGG | + | chr3.3:91883137-91883156 | MS.gene014568:CDS | 50.0% | |
| CACAGCAGAAACAAGCTGTG+AGG | - | chr3.3:91881662-91881681 | None:intergenic | 50.0% | |
| CAGGTGCTCAATCCACTTAC+CGG | + | chr3.3:91883136-91883155 | MS.gene014568:CDS | 50.0% | |
| GTCGATCAGCCGTATGCTAA+AGG | - | chr3.3:91882265-91882284 | None:intergenic | 50.0% | |
| TATGCTGAAGGAGCTAGGAG+TGG | + | chr3.3:91882862-91882881 | MS.gene014568:CDS | 50.0% | |
| TCGAGAAGTTGCTGTCGTGT+AGG | - | chr3.3:91881598-91881617 | None:intergenic | 50.0% | |
| TCTCCTTCGTCGATGGTGTA+TGG | + | chr3.3:91881716-91881735 | MS.gene014568:CDS | 50.0% | |
| TCTCGTATGCTGAAGGAGCT+AGG | + | chr3.3:91882857-91882876 | MS.gene014568:CDS | 50.0% | |
| ! | TTAGGCTCCAGAAGTGCGTA+AGG | + | chr3.3:91882379-91882398 | MS.gene014568:intron | 50.0% |
| CAGAAACAAGCTGTGAGGCG+AGG | - | chr3.3:91881657-91881676 | None:intergenic | 55.0% | |
| !! | AGAAGGCGTTGAAGCTGCTG+CGG | + | chr3.3:91882994-91883013 | MS.gene014568:CDS | 55.0% |
| !! | ATGATCGCTGCTGGCTCTGA+TGG | + | chr3.3:91881571-91881590 | MS.gene014568:CDS | 55.0% |
| CCATCGACGAAGGAGAGTCG+AGG | - | chr3.3:91881712-91881731 | None:intergenic | 60.0% | |
| CCTCGACTCTCCTTCGTCGA+TGG | + | chr3.3:91881709-91881728 | MS.gene014568:CDS | 60.0% | |
| GAAGGAGAGTCGAGGTCCAC+CGG | - | chr3.3:91881704-91881723 | None:intergenic | 60.0% | |
| GTGCTCAGCATGATCGCTGC+TGG | + | chr3.3:91881562-91881581 | MS.gene014568:CDS | 60.0% | |
| CTCTCCGACGCTGCTCCTGC+CGG | + | chr3.3:91881682-91881701 | MS.gene014568:CDS | 70.0% | |
| GAGAGTCGAGGTCCACCGGC+AGG | - | chr3.3:91881700-91881719 | None:intergenic | 70.0% | |
| TCCACCGGCAGGAGCAGCGT+CGG | - | chr3.3:91881689-91881708 | None:intergenic | 70.0% | |
| TCCGACGCTGCTCCTGCCGG+TGG | + | chr3.3:91881685-91881704 | MS.gene014568:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91881445 | 91883162 | 91881445 | ID=MS.gene014568 |
| chr3.3 | mRNA | 91881445 | 91883162 | 91881445 | ID=MS.gene014568.t1;Parent=MS.gene014568 |
| chr3.3 | exon | 91881445 | 91881831 | 91881445 | ID=MS.gene014568.t1.exon1;Parent=MS.gene014568.t1 |
| chr3.3 | CDS | 91881445 | 91881831 | 91881445 | ID=cds.MS.gene014568.t1;Parent=MS.gene014568.t1 |
| chr3.3 | exon | 91882383 | 91883162 | 91882383 | ID=MS.gene014568.t1.exon2;Parent=MS.gene014568.t1 |
| chr3.3 | CDS | 91882383 | 91883162 | 91882383 | ID=cds.MS.gene014568.t1;Parent=MS.gene014568.t1 |
| Gene Sequence |
| Protein sequence |
