AlfalfaGEDB | MS.gene014877

M. sativa cultivar XinJiangDaYe / MS.gene014877

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03789.16 PF03790.16 PF03791.16 PF05920.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014877.t1	KEH35909.1	95	416	9	2	1	416	1	404	1.30E-218	768.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014877.t1	O04136	69.3	433	77	11	1	383	1	427	6.3e-150	531.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014877.t1	A0A072V1N7	95.0	416	9	2	1	416	1	404	9.1e-219	768.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene014877.t1	TF	HB-KNOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene074258	MS.gene014877	PPI
MS.gene76034	MS.gene014877	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014877.t1	MTR_3g106400	96.635	416	2	2	1	416	1	404	0.0	830
MS.gene014877.t1	MTR_3g106400	96.345	383	2	2	1	383	1	371	0.0	761
MS.gene014877.t1	MTR_3g106400	96.345	383	2	2	1	383	1	371	0.0	761
MS.gene014877.t1	MTR_1g012960	66.970	439	86	8	1	383	1	436	0.0	557
MS.gene014877.t1	MTR_2g461240	66.006	353	79	6	31	382	42	354	1.87e-159	454
MS.gene014877.t1	MTR_4g116545	78.439	269	50	3	117	383	69	331	6.22e-152	433
MS.gene014877.t1	MTR_4g116545	80.078	256	43	3	117	370	69	318	1.11e-148	426
MS.gene014877.t1	MTR_5g011070	67.033	273	78	3	119	385	28	294	1.75e-128	373
MS.gene014877.t1	MTR_1g084060	35.249	261	122	8	119	367	20	245	1.43e-30	119
MS.gene014877.t1	MTR_1g084060	35.249	261	122	8	119	367	20	245	2.62e-30	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014877.t1	AT5G25220	65.217	437	80	12	1	383	1	419	0.0	511
MS.gene014877.t1	AT5G25220	65.138	436	80	12	1	382	1	418	3.26e-180	509
MS.gene014877.t1	AT5G11060	67.476	412	74	12	1	382	1	382	6.01e-174	492
MS.gene014877.t1	AT4G32040	62.895	380	126	8	6	383	13	379	4.85e-156	446
MS.gene014877.t1	AT4G32040	62.895	380	126	8	6	383	13	379	8.08e-156	445
MS.gene014877.t1	AT1G62990	62.759	290	99	4	96	382	7	290	5.50e-126	366
MS.gene014877.t1	AT1G70510	33.077	260	137	8	112	367	63	289	2.09e-29	117
MS.gene014877.t1	AT1G23380	32.616	279	143	9	119	389	86	327	9.62e-29	115
MS.gene014877.t1	AT1G70510	31.923	260	144	7	112	367	63	293	5.84e-28	112
MS.gene014877.t1	AT1G23380	32.384	281	143	10	119	389	86	329	7.20e-27	110

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Find 124 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTAAAATACCATGAAG+TGG	0.598924	3.3:-87357912	None:intergenic
AACCGGCGGTGTCGAGGTTG+AGG	0.460908	3.3:-87357546	None:intergenic
AAGCGGTGAGGCAACAGCGG+AGG	0.511964	3.3:+87357666	MS.gene014877:CDS
AATGCAGGTGATAAAAGTGA+CGG	0.675503	3.3:+87361473	MS.gene014877:CDS
AATGGTGGAGTGGGTTGTCT+TGG	0.431285	3.3:-87357378	None:intergenic
AATTGAAACAGATCAATAAC+TGG	0.381851	3.3:+87361294	MS.gene014877:CDS
ACAGGAGTTTCACCAGGGGA+AGG	0.636992	3.3:+87360203	MS.gene014877:intron
ACATGTCCGAGTCCATGCAA+TGG	0.642083	3.3:+87358730	MS.gene014877:CDS
ACCGCCGGTTCCCAATCCTC+CGG	0.570735	3.3:+87357559	MS.gene014877:CDS
ACCGGAGGATTGGGAACCGG+CGG	0.625286	3.3:-87357560	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAGCAAGGACAACT+GGG	-	chr3.3:87360006-87360025	None:intergenic	30.0%
AAAACATAATTACCCTCCAT+TGG	-	chr3.3:87358539-87358558	None:intergenic	30.0%
AAAGGTAAAATACCATGAAG+TGG	-	chr3.3:87357915-87357934	None:intergenic	30.0%
AAATTTGTGTCTACAGTAAC+TGG	-	chr3.3:87358594-87358613	None:intergenic	30.0%
AAGTGAAATTGAAACATGCA+CGG	+	chr3.3:87358136-87358155	MS.gene014877:intron	30.0%
AGTAATAATCAAGCCCTTAA+TGG	+	chr3.3:87359756-87359775	MS.gene014877:intron	30.0%
AGTCATTCATGCATAGTAAT+AGG	-	chr3.3:87358192-87358211	None:intergenic	30.0%
AGTGATGTTAATCTGTTTGA+TGG	+	chr3.3:87360269-87360288	MS.gene014877:CDS	30.0%
ATTCAAAGTACATGGTAGTT+TGG	-	chr3.3:87360065-87360084	None:intergenic	30.0%
ATTCATGACGTATTTGGTAT+AGG	-	chr3.3:87359435-87359454	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	87357364	87361508	87357364	ID=MS.gene014877
chr3.3	mRNA	87357364	87361508	87357364	ID=MS.gene014877.t1;Parent=MS.gene014877
chr3.3	exon	87357364	87357921	87357364	ID=MS.gene014877.t1.exon1;Parent=MS.gene014877.t1
chr3.3	CDS	87357364	87357921	87357364	ID=cds.MS.gene014877.t1;Parent=MS.gene014877.t1
chr3.3	exon	87358683	87358803	87358683	ID=MS.gene014877.t1.exon2;Parent=MS.gene014877.t1
chr3.3	CDS	87358683	87358803	87358683	ID=cds.MS.gene014877.t1;Parent=MS.gene014877.t1
chr3.3	exon	87360207	87360406	87360207	ID=MS.gene014877.t1.exon3;Parent=MS.gene014877.t1
chr3.3	CDS	87360207	87360406	87360207	ID=cds.MS.gene014877.t1;Parent=MS.gene014877.t1
chr3.3	exon	87360639	87360770	87360639	ID=MS.gene014877.t1.exon4;Parent=MS.gene014877.t1
chr3.3	CDS	87360639	87360770	87360639	ID=cds.MS.gene014877.t1;Parent=MS.gene014877.t1
chr3.3	exon	87361254	87361508	87361254	ID=MS.gene014877.t1.exon5;Parent=MS.gene014877.t1
chr3.3	CDS	87361254	87361508	87361254	ID=cds.MS.gene014877.t1;Parent=MS.gene014877.t1

Gene Sequence

>MS.gene014877

ATGGCGTATCACAACCAAGACAACCCACTCCACCATTTCACAGAACAACAACAACAACAACCAACCTCCGATCCTCACCACTCTTTCCAAACTGCACCTAACTGGCTCAACAACGCCCTTCTTCGCAACCTCGACACCAACGTCAACGCCACCGCCACAACCAACAACAACAGTACCAACTTCCTCAACCTCGACACCGCCGGTTCCCAATCCTCCGGTCAATGGCTCTCCCGTCCTGTCCTCCACCGAAACCACAGCGAAGTCATCGACGACGTCACCGGCGCTGGTATGAAGGCCGAGGAAAGCGGTGAGGCAACAGCGGAGGGAGTGATGAACTGGCAGAAAGCGAAACACAAAGGTGAAATAATGGCGCACCCGTTGTATGAACAGCTTCTATCAGCACACGTGTCGTGTTTGAGAATCGCCACGCCGGTTGACCAGTTGCCCAGGATCGACGCTCAGCTGGCAGAGTCACAGAATGTTGTTGCCAAGTACTCTGCGTTAGGACAACAGGGCATGCTTGATAACGATGATAATAAACAACTCGACCACTTCATGGTATTTTACCTTTCTCAATAATATTTACAAAAAATTGTGATTTTTTTTGTTTTATTTTATTTTTAAAAGCTTTGCGTGTCAATTAATGGATGGAAATGGATTTGGAAAATTTTCTCTCTCTCTGGACTCTGGGTGGTATTGACATGCTTTCTCTTTCTATGCAAAACTTAAATTTTAACTCGGCTTTGAATGAATCTAGTGTCCTTTTTTGCAAAAGTGAAATTGAAACATGCACGGTTGCTTCTTTTTTTTTTTTTTTTTCCTTTCCCTATTACTATGCATGAATGACTGAAAATAAGTCTAAAGTAGGATGATGATTACTTATTAATTAAAATAATTAAGGTAGCTAATGGTTCAATTTTGACCTTTTGAGCCTATCTTAACATGAACTTGACCTTTTGAGCTTATTTTAACATAAATTTGACCTTTTGAGCTTATTTTAACCGGCATGTTTATGTAGGGAGTTTGTCTTTTATTTGATTTCTACTTTCTTCTTCTTTTAATTACAATATTTTTTTTGTATGGTGGCATCTTTTTAGTTTTGATTCTTGTTATAGTAATTTTTTGCAATAATATTTTGGCGGTCCATGCGAGCTTCGATACATAAATCCTTGCCAATGGAGGGTAATTATGTTTTATTTTTTTATTTTTTTGTCGTGGAATATGATTCCAGTTACTGTAGACACAAATTTTGGTCAGTGCTAGAATTTATTTTCTGTTGTATGGTTACGGTTTTGAAATTTTCCTCGTTGATGTCGCAGTCGCATTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTCCAACAACATGTCCGAGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAACAGTCCTTACAAAGTCTAACAGGTACAGTAATATAATATATTCTTTGTCTGTTGATTGTTACATCTTAACTTAATAAATAAAAGTTATGCATGATAAAATAGAAATGTAATTTTTCCAAATTTTTGTTGCTTATTCCTAAAGATAAATTACACGAATGAAGTTTTTATAGGAAAAAATAGGAGTAATATGTGCTGCTGCCGCAGTATGTTTTCGGTTCAGTATAGGCCATAGGGTCTCATATTGGGATAGTTATTTATACTTTTCTCAATATAGGAATTATACGGGGTAACTTGTAACTTCATTTTCAAATTTTCTTACAAGCTCAATATTCAATGTTCAGCGTAACAATAAATGATAATTAAGATCTTAATGGTTGATAGTCAAAGAGGAACATGACTACAGGAATTAAAAGTTTCTTCCTTGTCCTGTACACCCTCCGGTCACTAATATAAGCAAAAAACTACATTTTAGGTTCATTCATTTAATGATGTATGTGGTCTATAATAAAGACCATGTGCATCATTAAATGAATGAATTTAAAATGTAGATTTTTGCTTATAATAGTGACCGGAGGGTGTATATATGAATTATTTGGGTTAGGGAAACTTCAAATCATCTTTGTTAACTTTATTAACATTCAAATATCAATCCTATACCAAATACGTCATGAATAATTTATAATGATATAATGGTCAAAATTTCTGTTTTCTAAATTTATTGAAACGAAGAATGAAGACTTTAGTAAAATAAATAAATAAAAATGTATTGAAGCTGTTATAGTTATACTGTATGGCCCAGTTGTCCTTGTTTTTTTGACAGAATTGTCCTTGCTCGTAGCATGTTATTATGCCAAACTATTATCCACCAAAAAAGATTAGCTAACTTGTTGTTCATACTAAACAGCAAAAGCATACATCACTTTTTCCAATTGGATATTAATCAATATGCAAAGTTCAGTGTAACAAGAAATAGTAGTAATAATCAAGCCCTTAATGGTTGATAGTCAAAGGAGGAACATGGCTACAGGAATTAAAAGTTCCTTCCTTGTCCCATATGAATTGTTTGGACTTTGGGTTAGGGAAACTTCAAATCTTTGTTAACTTTAATTAACATTAAAACATTGATCTTAAACCACATAATGAATAATTTATTAGTAAGATAGAATGGTCATAATTTCTGTGTTCTAAATGTATTGAAAACATCATAGTTATACTGTATGGCCCAGTTGTCCTTGCTTTTTTTTGACAGAATTGTCCTTACTTTTTAGCATGTTATTTTGCCAAACTACCATGTACTTTGAATATAGATACTTTTGTTAGATTAGCTAACTTGTTGCGCATAATAAACAGCAAAAGCACACAGCACTTTTTCCCATTAGATATGAGTACTAATTAAAGTGATGTTTATCTCCACATGTGTAACAGGAGTTTCACCAGGGGAAGGTACAGGAGCAACAATGTCTGAAGATGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGAGGTTTGGATGGTTCAGATAATAGCATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGTACGGTCCTCATGGATTACATTAAATGTTGAATAGGAAAGGTAGTAAATTAACTACAGATTTTAATATACTACTCTTCATTACCATCATTTCAAGTTTCAACACATTTTTCACTGTCTAGTGAAACTCATATATGATTCACTTTCACATGATTTAATGTAAGCTAATAGTAATATAAATTAAGTATATTCCGAAACGTGTATTAGAGAATGGGTTGCTCTTATTTTTGTAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGAAAACTTCCTGGTGACACAACCTCAGTACTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGTAAGAACTCTATATTGACTTTTACTAAAAAAATTATGAAATCCTTTTTCAGATTCAAAACATACTTGGTCATTTTAGTTTGCTAAACATTGATATTTTTTCGAACAATTTTGAATGAATTTAATGAATAGCAACATAGATGCCCTTGCTTGTCTATGATCAAGCATAGTGCACGTCATGTTTGAATAAACGACTTAATTGTGTGTTTATAGTATACATTTTTATTATATATAAGTACAATTATATGTTTTCATCTAAGTGATAAGTTGTTTTCATAAGCTATCTTAGATATCTTACGGAAATAAGTTGAAAAAAACATTTTATAGATCCAATCAGGTTCTCAAATATTTATGACAGCAGATAAACTCAAATAAACCATTCAAAATAGTTCACATGTTAGCGCGTACTTGTTGTCTCACAAGTCATAACCCACTAATCATTATTATTTTTAGTTCATCTTTGATATGTGTTTGTGCCTTTCAGGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACCGGGTTGCAATTGAAACAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGCGTTGAAGAGCAAGCGCAAGAGGTATTTCTATATTAAAAAAATAGTCCTTTTCATAATCTTAAATTTGCATGAACTCTGCACCGATCTTGAATTAGAAATAAGTAATGCAGGTGATAAAAGTGACGGTCGTTACATGTAA

Protein sequence

>MS.gene014877.t1

MAYHNQDNPLHHFTEQQQQQPTSDPHHSFQTAPNWLNNALLRNLDTNVNATATTNNNSTNFLNLDTAGSQSSGQWLSRPVLHRNHSEVIDDVTGAGMKAEESGEATAEGVMNWQKAKHKGEIMAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAESQNVVAKYSALGQQGMLDNDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNALKSKRKRYFYIKKIVLFIILNLHELCTDLELEISNAGDKSDGRYM