Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014956.t1 | XP_003603229.1 | 97.7 | 304 | 5 | 1 | 1 | 302 | 1 | 304 | 2.60E-165 | 591.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014956.t1 | Q8IUS5 | 25.6 | 285 | 161 | 10 | 50 | 302 | 93 | 358 | 2.6e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014956.t1 | G7J939 | 97.7 | 304 | 5 | 1 | 1 | 302 | 1 | 304 | 1.9e-165 | 591.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014956 | MS.gene047420 | PPI |
| MS.gene014956 | MS.gene01173 | PPI |
| MS.gene014956 | MS.gene002205 | PPI |
| MS.gene014956 | MS.gene071915 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014956.t1 | MTR_3g105290 | 97.697 | 304 | 5 | 1 | 1 | 302 | 1 | 304 | 0.0 | 608 |
| MS.gene014956.t1 | MTR_3g105290 | 97.119 | 243 | 5 | 1 | 1 | 241 | 1 | 243 | 4.09e-176 | 486 |
| MS.gene014956.t1 | MTR_3g087050 | 39.322 | 295 | 176 | 3 | 5 | 298 | 6 | 298 | 5.64e-75 | 233 |
| MS.gene014956.t1 | MTR_5g064035 | 38.754 | 289 | 172 | 4 | 13 | 298 | 12 | 298 | 4.90e-69 | 217 |
| MS.gene014956.t1 | MTR_2g008880 | 39.661 | 295 | 174 | 4 | 6 | 298 | 9 | 301 | 1.20e-68 | 216 |
| MS.gene014956.t1 | MTR_5g020250 | 38.194 | 288 | 162 | 5 | 23 | 298 | 19 | 302 | 2.78e-62 | 200 |
| MS.gene014956.t1 | MTR_8g077290 | 37.801 | 291 | 162 | 5 | 23 | 298 | 19 | 305 | 5.22e-62 | 199 |
| MS.gene014956.t1 | MTR_5g020320 | 38.043 | 276 | 161 | 5 | 30 | 299 | 26 | 297 | 5.68e-60 | 194 |
| MS.gene014956.t1 | MTR_5g020260 | 37.370 | 289 | 165 | 6 | 23 | 299 | 19 | 303 | 2.96e-56 | 184 |
| MS.gene014956.t1 | MTR_8g077290 | 38.911 | 257 | 138 | 5 | 23 | 264 | 19 | 271 | 3.97e-55 | 180 |
| MS.gene014956.t1 | MTR_8g090060 | 32.542 | 295 | 162 | 4 | 6 | 298 | 5 | 264 | 1.30e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014956.t1 | AT5G21950 | 51.307 | 306 | 144 | 2 | 1 | 302 | 1 | 305 | 1.53e-116 | 338 |
| MS.gene014956.t1 | AT5G21950 | 51.307 | 306 | 144 | 2 | 1 | 302 | 53 | 357 | 1.18e-115 | 338 |
| MS.gene014956.t1 | AT4G33180 | 51.316 | 304 | 141 | 4 | 2 | 299 | 3 | 305 | 1.36e-110 | 323 |
| MS.gene014956.t1 | AT5G21950 | 52.239 | 268 | 123 | 2 | 1 | 264 | 1 | 267 | 2.79e-102 | 300 |
| MS.gene014956.t1 | AT5G21950 | 50.704 | 213 | 100 | 2 | 1 | 209 | 1 | 212 | 5.81e-73 | 224 |
| MS.gene014956.t1 | AT5G21950 | 50.704 | 213 | 100 | 2 | 1 | 209 | 1 | 212 | 5.81e-73 | 224 |
| MS.gene014956.t1 | AT5G21950 | 50.704 | 213 | 100 | 2 | 1 | 209 | 53 | 264 | 3.98e-72 | 224 |
| MS.gene014956.t1 | AT5G21950 | 50.704 | 213 | 100 | 2 | 1 | 209 | 53 | 264 | 3.98e-72 | 224 |
| MS.gene014956.t1 | AT4G33180 | 51.500 | 200 | 91 | 3 | 2 | 196 | 3 | 201 | 1.11e-69 | 216 |
| MS.gene014956.t1 | AT5G09430 | 36.120 | 299 | 183 | 4 | 6 | 298 | 11 | 307 | 1.99e-65 | 208 |
| MS.gene014956.t1 | AT4G39955 | 35.786 | 299 | 188 | 4 | 2 | 298 | 1 | 297 | 9.19e-64 | 204 |
| MS.gene014956.t1 | AT1G78210 | 37.544 | 285 | 170 | 6 | 20 | 298 | 19 | 301 | 6.88e-60 | 194 |
| MS.gene014956.t1 | AT1G72620 | 36.900 | 271 | 162 | 6 | 33 | 298 | 65 | 331 | 1.35e-56 | 186 |
| MS.gene014956.t1 | AT1G17430 | 35.333 | 300 | 176 | 9 | 7 | 298 | 40 | 329 | 5.41e-55 | 182 |
| MS.gene014956.t1 | AT2G18360 | 34.628 | 309 | 182 | 6 | 6 | 298 | 2 | 306 | 3.84e-53 | 176 |
| MS.gene014956.t1 | AT4G36610 | 34.247 | 292 | 170 | 6 | 23 | 298 | 19 | 304 | 1.27e-48 | 165 |
| MS.gene014956.t1 | AT2G18360 | 34.909 | 275 | 159 | 6 | 6 | 264 | 2 | 272 | 7.43e-46 | 156 |
Find 67 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCGGTTGTAAGAAATTT+AGG | 0.175192 | 3.2:-87030317 | None:intergenic |
| TGGAATAGTTGCGTATAATT+TGG | 0.256443 | 3.2:+87027994 | MS.gene014956:CDS |
| GTTCCCGATCTAATCTTCTT+TGG | 0.272608 | 3.2:+87027857 | MS.gene014956:CDS |
| TTGCAGGGTAATAAGTAAAA+AGG | 0.295321 | 3.2:+87030221 | MS.gene014956:intron |
| AGAGATTATACTCAGATAAT+AGG | 0.333887 | 3.2:+87028390 | MS.gene014956:intron |
| AAAGTAGTTATTGCAAGTTC+TGG | 0.338855 | 3.2:+87028046 | MS.gene014956:CDS |
| GAAAAGATGGAGCTTCTAAA+TGG | 0.345980 | 3.2:+87028416 | MS.gene014956:CDS |
| TTTCTTGAGGGACTTCTTAA+GGG | 0.369669 | 3.2:+87028219 | MS.gene014956:CDS |
| GGCAAGATTGGAATTGATAA+AGG | 0.387643 | 3.2:+87030242 | MS.gene014956:CDS |
| AAACATTTCACCTCTTCAAC+AGG | 0.392798 | 3.2:+87028466 | MS.gene014956:CDS |
| GGAAAATTGTTGGAGAAGAT+AGG | 0.395031 | 3.2:+87027935 | MS.gene014956:CDS |
| TATAATTTGGCGAAGATGTT+GGG | 0.398616 | 3.2:+87028007 | MS.gene014956:CDS |
| CTCGTCCTCATCCACGGTTT+CGG | 0.400394 | 3.2:+87027770 | MS.gene014956:CDS |
| ATACATACTCCTTCAATTCA+TGG | 0.401600 | 3.2:-87028619 | None:intergenic |
| CTTCTAAATGGATTGTCTAT+AGG | 0.430621 | 3.2:+87028428 | MS.gene014956:CDS |
| TACCTCCGCCGTTGTTTCAC+CGG | 0.432558 | 3.2:+87027656 | MS.gene014956:CDS |
| ATAATATTGTTGAATTCCTC+CGG | 0.432661 | 3.2:-87030294 | None:intergenic |
| CGCCGTTGTTTCACCGGCGC+CGG | 0.436167 | 3.2:+87027662 | MS.gene014956:CDS |
| TTCAACTGTTGAGGAGAAGA+AGG | 0.453370 | 3.2:-87028145 | None:intergenic |
| GGAATCAGTTGGAAAATTGT+TGG | 0.459337 | 3.2:+87027925 | MS.gene014956:CDS |
| TCCAGGAAGTTCTCGTATTG+TGG | 0.474193 | 3.2:+87028561 | MS.gene014956:intron |
| GTCCTATGGCGATGTGGCAA+TGG | 0.477842 | 3.2:+87027792 | MS.gene014956:CDS |
| AATTCATGGGCCATCTGCAC+GGG | 0.491317 | 3.2:-87028605 | None:intergenic |
| AAATGGATTGTCTATAGGAC+AGG | 0.491723 | 3.2:+87028433 | MS.gene014956:CDS |
| CATCCACGGTTTCGGTCCTA+TGG | 0.493553 | 3.2:+87027778 | MS.gene014956:CDS |
| GCAGATGGCCCATGAATTGA+AGG | 0.496257 | 3.2:+87028610 | MS.gene014956:CDS |
| GTGGCGTTGTTGAAAAGAGC+TGG | 0.502078 | 3.2:+87028094 | MS.gene014956:CDS |
| TTGAGATAAGAGACCGGCGC+CGG | 0.505406 | 3.2:-87027675 | None:intergenic |
| CATTTAGTTACCTGTTGAAG+AGG | 0.505749 | 3.2:-87028476 | None:intergenic |
| CCATCGTTTCTTAGTTTCGC+CGG | 0.509953 | 3.2:+87027620 | MS.gene014956:CDS |
| AGATAATAGGAAGGAAAAGA+TGG | 0.510309 | 3.2:+87028403 | MS.gene014956:CDS |
| GTATAATTTGGCGAAGATGT+TGG | 0.512839 | 3.2:+87028006 | MS.gene014956:CDS |
| CCAGGAAGTTCTCGTATTGT+GGG | 0.514777 | 3.2:+87028562 | MS.gene014956:intron |
| CAATATATTTCCCGTGCAGA+TGG | 0.516669 | 3.2:+87028595 | MS.gene014956:CDS |
| AGTTTCGCCGGCTTATACAA+CGG | 0.520083 | 3.2:+87027632 | MS.gene014956:CDS |
| CACGTGGTGGGAACGAGTTA+TGG | 0.520296 | 3.2:+87027971 | MS.gene014956:CDS |
| CGCCGGTGAAACAACGGCGG+AGG | 0.521427 | 3.2:-87027658 | None:intergenic |
| TCTCCAAAGAAGATTAGATC+GGG | 0.527590 | 3.2:-87027860 | None:intergenic |
| AAATTTCAAGCGGAATCAGT+TGG | 0.532529 | 3.2:+87027914 | MS.gene014956:CDS |
| TTCTCCAAAGAAGATTAGAT+CGG | 0.537749 | 3.2:-87027861 | None:intergenic |
| TGTGCCACAAATTGAAAAGC+CGG | 0.542764 | 3.2:+87030275 | MS.gene014956:CDS |
| GTTGTTGAAAAGAGCTGGAT+TGG | 0.546954 | 3.2:+87028099 | MS.gene014956:CDS |
| AGAGGTTGAAGTGTGGAGCT+AGG | 0.550512 | 3.2:-87027832 | None:intergenic |
| TACATACTCCTTCAATTCAT+GGG | 0.553495 | 3.2:-87028618 | None:intergenic |
| TAGGACCGAAACCGTGGATG+AGG | 0.554881 | 3.2:-87027775 | None:intergenic |
| CAATTCATGGGCCATCTGCA+CGG | 0.558178 | 3.2:-87028606 | None:intergenic |
| CCGTGGATGAGGACGAGAGA+AGG | 0.567087 | 3.2:-87027764 | None:intergenic |
| CCTTCTCTCGTCCTCATCCA+CGG | 0.567621 | 3.2:+87027764 | MS.gene014956:CDS |
| CGCCATTGCCACATCGCCAT+AGG | 0.577637 | 3.2:-87027794 | None:intergenic |
| GACCGGCGCCGGTGAAACAA+CGG | 0.598385 | 3.2:-87027664 | None:intergenic |
| ATTATACTCAGATAATAGGA+AGG | 0.616496 | 3.2:+87028394 | MS.gene014956:CDS |
| GAGGTAGCCGTTGTATAAGC+CGG | 0.623456 | 3.2:-87027639 | None:intergenic |
| CAGGAAGTTCTCGTATTGTG+GGG | 0.624648 | 3.2:+87028563 | MS.gene014956:intron |
| AGGAAGTTCTCGTATTGTGG+GGG | 0.630670 | 3.2:+87028564 | MS.gene014956:intron |
| AAGAACAGAGAAATTTCAAG+CGG | 0.633582 | 3.2:+87027904 | MS.gene014956:CDS |
| GTTTCGGTCCTATGGCGATG+TGG | 0.638713 | 3.2:+87027786 | MS.gene014956:CDS |
| CCGGCGAAACTAAGAAACGA+TGG | 0.642487 | 3.2:-87027620 | None:intergenic |
| AAGATTGGAATTGATAAAGG+AGG | 0.650039 | 3.2:+87030245 | MS.gene014956:CDS |
| GTGGTGGGAACGAGTTATGG+TGG | 0.651158 | 3.2:+87027974 | MS.gene014956:CDS |
| TCGCCATAGGACCGAAACCG+TGG | 0.671124 | 3.2:-87027781 | None:intergenic |
| AGATTAGATCGGGAACGTAG+AGG | 0.675856 | 3.2:-87027850 | None:intergenic |
| GGAAGTTCTCGTATTGTGGG+GGG | 0.676838 | 3.2:+87028565 | MS.gene014956:intron |
| GGAACGTAGAGGTTGAAGTG+TGG | 0.688244 | 3.2:-87027839 | None:intergenic |
| CATAACTCGTTCCCACCACG+TGG | 0.694739 | 3.2:-87027970 | None:intergenic |
| GCCACAAATTGAAAAGCCGG+AGG | 0.697095 | 3.2:+87030278 | MS.gene014956:CDS |
| CGGCGCCGGTGAAACAACGG+CGG | 0.720587 | 3.2:-87027661 | None:intergenic |
| TATGACAAAGAATCATAACG+TGG | 0.759539 | 3.2:+87028075 | MS.gene014956:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTCTCAAATATTTTAA+TGG | + | chr3.2:87029435-87029454 | MS.gene014956:intron | 10.0% |
| !!! | CATAGTTTTTTTTTTTTTTA+GGG | + | chr3.2:87028841-87028860 | MS.gene014956:intron | 10.0% |
| !!! | TGTAATTTTCTTAAAAAAAA+GGG | - | chr3.2:87029940-87029959 | None:intergenic | 10.0% |
| !!! | TTGTAATTTTCTTAAAAAAA+AGG | - | chr3.2:87029941-87029960 | None:intergenic | 10.0% |
| !! | AACTCTAAACTTTAATATAT+GGG | - | chr3.2:87029627-87029646 | None:intergenic | 15.0% |
| !! | ACTTATAATAAGTTCATAAT+GGG | + | chr3.2:87028704-87028723 | MS.gene014956:intron | 15.0% |
| !! | CATTTAATAAATAATGTATG+TGG | + | chr3.2:87029305-87029324 | MS.gene014956:intron | 15.0% |
| !! | CCTAAAAAAAAAAAAAACTA+TGG | - | chr3.2:87028843-87028862 | None:intergenic | 15.0% |
| !! | TGAATGAAATTCAATAATAA+GGG | - | chr3.2:87029091-87029110 | None:intergenic | 15.0% |
| !! | TTGAATGAAATTCAATAATA+AGG | - | chr3.2:87029092-87029111 | None:intergenic | 15.0% |
| !!! | CCATAGTTTTTTTTTTTTTT+AGG | + | chr3.2:87028840-87028859 | MS.gene014956:intron | 15.0% |
| !!! | TAAAATTAGTTTATAACCTA+TGG | - | chr3.2:87028877-87028896 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATTTTGTTTGAG+AGG | + | chr3.2:87030133-87030152 | MS.gene014956:intron | 15.0% |
| !! | AAAAAACTATGGATGATATT+TGG | - | chr3.2:87028832-87028851 | None:intergenic | 20.0% |
| !! | AAAAACTATGGATGATATTT+GGG | - | chr3.2:87028831-87028850 | None:intergenic | 20.0% |
| !! | AGTGTATCTATATGTTATTA+AGG | - | chr3.2:87028687-87028706 | None:intergenic | 20.0% |
| !! | CACTTATAATAAGTTCATAA+TGG | + | chr3.2:87028703-87028722 | MS.gene014956:intron | 20.0% |
| !! | CATTCAATAAATGATGTATA+TGG | - | chr3.2:87029344-87029363 | None:intergenic | 20.0% |
| !! | GAACTCTAAACTTTAATATA+TGG | - | chr3.2:87029628-87029647 | None:intergenic | 20.0% |
| !! | GTGTATCTATATGTTATTAA+GGG | - | chr3.2:87028686-87028705 | None:intergenic | 20.0% |
| !! | TTATTAAGGGAAAAGAAAAT+TGG | - | chr3.2:87028673-87028692 | None:intergenic | 20.0% |
| !!! | ACACATTTAATTTACTTGTA+CGG | - | chr3.2:87028507-87028526 | None:intergenic | 20.0% |
| !!! | ATCTAGTATTCCAATTTTAT+TGG | - | chr3.2:87028795-87028814 | None:intergenic | 20.0% |
| !!! | ATTCAATAATAAGGGTATAA+TGG | - | chr3.2:87029083-87029102 | None:intergenic | 20.0% |
| !!! | TCTAGTATTCCAATTTTATT+GGG | - | chr3.2:87028794-87028813 | None:intergenic | 20.0% |
| ! | AAGAAAAAATTAGGCACAAA+AGG | - | chr3.2:87028205-87028224 | None:intergenic | 25.0% |
| ! | AATAAGTAAAAAGGCAAGAT+TGG | + | chr3.2:87030230-87030249 | MS.gene014956:CDS | 25.0% |
| ! | AATATATGGGAAATGTTAAC+CGG | - | chr3.2:87029614-87029633 | None:intergenic | 25.0% |
| ! | ACAAAATATTATGCAGGATT+TGG | - | chr3.2:87028645-87028664 | None:intergenic | 25.0% |
| ! | ACATTTCAATAAACCCATTT+CGG | - | chr3.2:87030048-87030067 | None:intergenic | 25.0% |
| ! | AGAAAAAATTAGGCACAAAA+GGG | - | chr3.2:87028204-87028223 | None:intergenic | 25.0% |
| ! | AGAGATTATACTCAGATAAT+AGG | + | chr3.2:87028390-87028409 | MS.gene014956:intron | 25.0% |
| ! | ATAACCTATGGATGATATTT+GGG | - | chr3.2:87028865-87028884 | None:intergenic | 25.0% |
| ! | ATAATATTGTTGAATTCCTC+CGG | - | chr3.2:87030297-87030316 | None:intergenic | 25.0% |
| ! | ATATAAGATTGATTGATTGG+TGG | + | chr3.2:87028727-87028746 | MS.gene014956:intron | 25.0% |
| ! | ATTATACTCAGATAATAGGA+AGG | + | chr3.2:87028394-87028413 | MS.gene014956:CDS | 25.0% |
| ! | ATTTCGGTTGTAAGAAATTT+AGG | - | chr3.2:87030320-87030339 | None:intergenic | 25.0% |
| ! | CTTCTTATTAACTTATTGCA+GGG | + | chr3.2:87030206-87030225 | MS.gene014956:intron | 25.0% |
| ! | TATAACCTATGGATGATATT+TGG | - | chr3.2:87028866-87028885 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr3.2:87029121-87029140 | MS.gene014956:intron | 25.0% |
| ! | TCCTTATTAATTGTAGTTAG+TGG | - | chr3.2:87029125-87029144 | None:intergenic | 25.0% |
| ! | TTCACTATGTTAGGAATTTA+CGG | + | chr3.2:87029817-87029836 | MS.gene014956:intron | 25.0% |
| !!! | ATCAAATTTTTCAACTGTTG+AGG | - | chr3.2:87028157-87028176 | None:intergenic | 25.0% |
| !!! | TCTTACATTTGATTTGATGA+TGG | + | chr3.2:87029744-87029763 | MS.gene014956:intron | 25.0% |
| AAAATTATCCAATGGATCGA+TGG | + | chr3.2:87028933-87028952 | MS.gene014956:intron | 30.0% | |
| AAAGTAGTTATTGCAAGTTC+TGG | + | chr3.2:87028046-87028065 | MS.gene014956:CDS | 30.0% | |
| AAGAACAGAGAAATTTCAAG+CGG | + | chr3.2:87027904-87027923 | MS.gene014956:CDS | 30.0% | |
| AAGATTGGAATTGATAAAGG+AGG | + | chr3.2:87030245-87030264 | MS.gene014956:CDS | 30.0% | |
| AAGTCCCTCAAGAAAAAATT+AGG | - | chr3.2:87028214-87028233 | None:intergenic | 30.0% | |
| AATTACGTACCATGTATGTA+TGG | - | chr3.2:87028306-87028325 | None:intergenic | 30.0% | |
| AGATAATAGGAAGGAAAAGA+TGG | + | chr3.2:87028403-87028422 | MS.gene014956:CDS | 30.0% | |
| ATACATACTCCTTCAATTCA+TGG | - | chr3.2:87028622-87028641 | None:intergenic | 30.0% | |
| CCTGCAATAAGTTAATAAGA+AGG | - | chr3.2:87030208-87030227 | None:intergenic | 30.0% | |
| CCTTCTTATTAACTTATTGC+AGG | + | chr3.2:87030205-87030224 | MS.gene014956:intron | 30.0% | |
| GCAGAAACAAAATATTATGC+AGG | - | chr3.2:87028651-87028670 | None:intergenic | 30.0% | |
| GGGATATAAGATTGATTGAT+TGG | + | chr3.2:87028724-87028743 | MS.gene014956:intron | 30.0% | |
| GTGATGTGAAATTACCAAAA+TGG | + | chr3.2:87029914-87029933 | MS.gene014956:intron | 30.0% | |
| TACATACTCCTTCAATTCAT+GGG | - | chr3.2:87028621-87028640 | None:intergenic | 30.0% | |
| TAGATCCCAAAATTATCCAA+TGG | + | chr3.2:87028925-87028944 | MS.gene014956:intron | 30.0% | |
| TATAATTTGGCGAAGATGTT+GGG | + | chr3.2:87028007-87028026 | MS.gene014956:CDS | 30.0% | |
| TATGACAAAGAATCATAACG+TGG | + | chr3.2:87028075-87028094 | MS.gene014956:CDS | 30.0% | |
| TCACTATGTTAGGAATTTAC+GGG | + | chr3.2:87029818-87029837 | MS.gene014956:intron | 30.0% | |
| TGGAATAGTTGCGTATAATT+TGG | + | chr3.2:87027994-87028013 | MS.gene014956:CDS | 30.0% | |
| TTAGGGAAAATATCATCCAT+AGG | + | chr3.2:87028858-87028877 | MS.gene014956:intron | 30.0% | |
| TTCTCCAAAGAAGATTAGAT+CGG | - | chr3.2:87027864-87027883 | None:intergenic | 30.0% | |
| TTGCAGGGTAATAAGTAAAA+AGG | + | chr3.2:87030221-87030240 | MS.gene014956:intron | 30.0% | |
| ! | AAGTTTCTTACATTTGAGAC+CGG | + | chr3.2:87029379-87029398 | MS.gene014956:intron | 30.0% |
| ! | AAGTTTCTTACATTTGAGAC+CGG | - | chr3.2:87029398-87029379 | None:intergenic | 30.0% |
| ! | AGGTTTGTGCACAATTTTTA+AGG | - | chr3.2:87029231-87029250 | None:intergenic | 30.0% |
| ! | ATCGATCCATTGGATAATTT+TGG | - | chr3.2:87028934-87028953 | None:intergenic | 30.0% |
| ! | ATTGATTGATTGGTGGTTAT+GGG | + | chr3.2:87028734-87028753 | MS.gene014956:intron | 30.0% |
| ! | CTTAAAAAAAAGGGCCATTT+TGG | - | chr3.2:87029931-87029950 | None:intergenic | 30.0% |
| ! | TCGATCCATTGGATAATTTT+GGG | - | chr3.2:87028933-87028952 | None:intergenic | 30.0% |
| ! | TTGTTTTCTTAACCAATTCC+TGG | + | chr3.2:87029583-87029602 | MS.gene014956:intron | 30.0% |
| !! | ATTTTAATGGTCATGCTAAC+CGG | + | chr3.2:87029448-87029467 | MS.gene014956:intron | 30.0% |
| !! | CTTCTAAATGGATTGTCTAT+AGG | + | chr3.2:87028428-87028447 | MS.gene014956:CDS | 30.0% |
| !! | TTTTGTGTGGATTTGTTTGT+TGG | - | chr3.2:87027743-87027762 | None:intergenic | 30.0% |
| !!! | GATTTTTTGAGATAAGAGAC+CGG | - | chr3.2:87027684-87027703 | None:intergenic | 30.0% |
| !!! | TGTGCCTAATTTTTTCTTGA+GGG | + | chr3.2:87028207-87028226 | MS.gene014956:CDS | 30.0% |
| !!! | TTGTGCCTAATTTTTTCTTG+AGG | + | chr3.2:87028206-87028225 | MS.gene014956:CDS | 30.0% |
| AAACATTTCACCTCTTCAAC+AGG | + | chr3.2:87028466-87028485 | MS.gene014956:CDS | 35.0% | |
| AAATTTCAAGCGGAATCAGT+TGG | + | chr3.2:87027914-87027933 | MS.gene014956:CDS | 35.0% | |
| ACAATTTCTTGGCCTAAGTA+GGG | - | chr3.2:87028764-87028783 | None:intergenic | 35.0% | |
| ACGTAATTTGAACTCTCGTA+TGG | + | chr3.2:87028318-87028337 | MS.gene014956:intron | 35.0% | |
| AGATGAAAGAACACATGGAA+GGG | + | chr3.2:87029873-87029892 | MS.gene014956:intron | 35.0% | |
| ATCATCCTCATCATAACCTA+TGG | - | chr3.2:87029695-87029714 | None:intergenic | 35.0% | |
| ATTTCGCATTACTCATATCC+AGG | + | chr3.2:87028544-87028563 | MS.gene014956:intron | 35.0% | |
| CATGTATGCTTCACTATGTT+AGG | + | chr3.2:87029808-87029827 | MS.gene014956:intron | 35.0% | |
| CATTTAGTTACCTGTTGAAG+AGG | - | chr3.2:87028479-87028498 | None:intergenic | 35.0% | |
| GAAAAGATGGAGCTTCTAAA+TGG | + | chr3.2:87028416-87028435 | MS.gene014956:CDS | 35.0% | |
| GAACTCTCGTATGGTAAAAA+GGG | + | chr3.2:87028327-87028346 | MS.gene014956:intron | 35.0% | |
| GACTTCTTTAACCAGAATCA+TGG | - | chr3.2:87029477-87029496 | None:intergenic | 35.0% | |
| GATGGAGGTAGTGAAAAAAA+GGG | + | chr3.2:87029988-87030007 | MS.gene014956:intron | 35.0% | |
| GGAAAATTGTTGGAGAAGAT+AGG | + | chr3.2:87027935-87027954 | MS.gene014956:CDS | 35.0% | |
| GGAATCAGTTGGAAAATTGT+TGG | + | chr3.2:87027925-87027944 | MS.gene014956:CDS | 35.0% | |
| GGCAAGATTGGAATTGATAA+AGG | + | chr3.2:87030242-87030261 | MS.gene014956:CDS | 35.0% | |
| GTAAGCAGTCCCAATAAAAT+TGG | + | chr3.2:87028782-87028801 | MS.gene014956:intron | 35.0% | |
| GTATAATTTGGCGAAGATGT+TGG | + | chr3.2:87028006-87028025 | MS.gene014956:CDS | 35.0% | |
| GTGAATACACCATACATACA+TGG | + | chr3.2:87028294-87028313 | MS.gene014956:intron | 35.0% | |
| TACAATTTCTTGGCCTAAGT+AGG | - | chr3.2:87028765-87028784 | None:intergenic | 35.0% | |
| TCATCCTCATCATAACCTAT+GGG | - | chr3.2:87029694-87029713 | None:intergenic | 35.0% | |
| TCGTATGGTAAAAAGGGAAA+GGG | + | chr3.2:87028333-87028352 | MS.gene014956:intron | 35.0% | |
| TCTCAAAATAATACTCCCTC+CGG | - | chr3.2:87029401-87029420 | None:intergenic | 35.0% | |
| TCTCCAAAGAAGATTAGATC+GGG | - | chr3.2:87027863-87027882 | None:intergenic | 35.0% | |
| TGAACTCTCGTATGGTAAAA+AGG | + | chr3.2:87028326-87028345 | MS.gene014956:intron | 35.0% | |
| TGATGGAGGTAGTGAAAAAA+AGG | + | chr3.2:87029987-87030006 | MS.gene014956:intron | 35.0% | |
| TTAGCCCAAATATCATCCAT+AGG | + | chr3.2:87028824-87028843 | MS.gene014956:intron | 35.0% | |
| TTTCAATAAACCCATTTCGG+CGG | - | chr3.2:87030045-87030064 | None:intergenic | 35.0% | |
| TTTCTTGAGGGACTTCTTAA+GGG | + | chr3.2:87028219-87028238 | MS.gene014956:CDS | 35.0% | |
| ! | ACGAAACATCTCTCCATTTT+TGG | + | chr3.2:87027714-87027733 | MS.gene014956:CDS | 35.0% |
| ! | GATAAGTTGACATCATTACG+TGG | + | chr3.2:87029649-87029668 | MS.gene014956:intron | 35.0% |
| ! | GATTGATTGATTGGTGGTTA+TGG | + | chr3.2:87028733-87028752 | MS.gene014956:intron | 35.0% |
| ! | GATTTTTGCTCTTTGCTCTT+TGG | + | chr3.2:87029769-87029788 | MS.gene014956:intron | 35.0% |
| ! | GGGATCTAGTTTATAACCTA+TGG | - | chr3.2:87028913-87028932 | None:intergenic | 35.0% |
| ! | TTTTCTTGAGGGACTTCTTA+AGG | + | chr3.2:87028218-87028237 | MS.gene014956:CDS | 35.0% |
| !! | AAATGGATTGTCTATAGGAC+AGG | + | chr3.2:87028433-87028452 | MS.gene014956:CDS | 35.0% |
| !! | CGAAACATCTCTCCATTTTT+GGG | + | chr3.2:87027715-87027734 | MS.gene014956:CDS | 35.0% |
| !! | GAAACATCTCTCCATTTTTG+GGG | + | chr3.2:87027716-87027735 | MS.gene014956:CDS | 35.0% |
| !!! | AGACACTTATTTTGAGACGA+AGG | - | chr3.2:87028985-87029004 | None:intergenic | 35.0% |
| AAAGAGAGAACTGAGGGAAT+AGG | + | chr3.2:87029845-87029864 | MS.gene014956:intron | 40.0% | |
| AAATGTTAACCGGTGTTTCC+AGG | - | chr3.2:87029604-87029623 | None:intergenic | 40.0% | |
| AAGAGAGAACTGAGGGAATA+GGG | + | chr3.2:87029846-87029865 | MS.gene014956:intron | 40.0% | |
| ATGAAATGCCATCGATCCAT+TGG | - | chr3.2:87028944-87028963 | None:intergenic | 40.0% | |
| CAATATATTTCCCGTGCAGA+TGG | + | chr3.2:87028595-87028614 | MS.gene014956:CDS | 40.0% | |
| CATCCTCATCATAACCTATG+GGG | - | chr3.2:87029693-87029712 | None:intergenic | 40.0% | |
| CTCGTATGGTAAAAAGGGAA+AGG | + | chr3.2:87028332-87028351 | MS.gene014956:intron | 40.0% | |
| GAGAGAGATGAAAGAACACA+TGG | + | chr3.2:87029868-87029887 | MS.gene014956:intron | 40.0% | |
| GAGATGAAAGAACACATGGA+AGG | + | chr3.2:87029872-87029891 | MS.gene014956:intron | 40.0% | |
| GTTATGGGTTTACCCTACTT+AGG | + | chr3.2:87028749-87028768 | MS.gene014956:intron | 40.0% | |
| GTTCCCGATCTAATCTTCTT+TGG | + | chr3.2:87027857-87027876 | MS.gene014956:CDS | 40.0% | |
| GTTGTTGAAAAGAGCTGGAT+TGG | + | chr3.2:87028099-87028118 | MS.gene014956:CDS | 40.0% | |
| TAACCAATTCCTGGAAACAC+CGG | + | chr3.2:87029592-87029611 | MS.gene014956:intron | 40.0% | |
| TACAAAACAGCCATCCACAT+TGG | + | chr3.2:87029956-87029975 | MS.gene014956:intron | 40.0% | |
| TGGGACTGCTTACAATTTCT+TGG | - | chr3.2:87028775-87028794 | None:intergenic | 40.0% | |
| TGTGCCACAAATTGAAAAGC+CGG | + | chr3.2:87030275-87030294 | MS.gene014956:CDS | 40.0% | |
| TTAACCAGAATCATGGACAC+CGG | - | chr3.2:87029470-87029489 | None:intergenic | 40.0% | |
| TTCAACTGTTGAGGAGAAGA+AGG | - | chr3.2:87028148-87028167 | None:intergenic | 40.0% | |
| ! | TGTTTGTTGGACCCCAAAAA+TGG | - | chr3.2:87027730-87027749 | None:intergenic | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr3.2:87029383-87029402 | MS.gene014956:intron | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | - | chr3.2:87029402-87029383 | None:intergenic | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr3.2:87029382-87029401 | MS.gene014956:intron | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | - | chr3.2:87029401-87029382 | None:intergenic | 40.0% |
| ACACCCCATAGGTTATGATG+AGG | + | chr3.2:87029687-87029706 | MS.gene014956:intron | 45.0% | |
| AGAACACATGGAAGGGTTTG+AGG | + | chr3.2:87029880-87029899 | MS.gene014956:intron | 45.0% | |
| AGATTAGATCGGGAACGTAG+AGG | - | chr3.2:87027853-87027872 | None:intergenic | 45.0% | |
| AGCAACTCGTGTAAGTCATG+TGG | - | chr3.2:87030184-87030203 | None:intergenic | 45.0% | |
| AGGAAGTTCTCGTATTGTGG+GGG | + | chr3.2:87028564-87028583 | MS.gene014956:intron | 45.0% | |
| CAGGAAGTTCTCGTATTGTG+GGG | + | chr3.2:87028563-87028582 | MS.gene014956:intron | 45.0% | |
| CATACACATGCCAATGTGGA+TGG | - | chr3.2:87029969-87029988 | None:intergenic | 45.0% | |
| CATTGGCATGTGTATGATGG+AGG | + | chr3.2:87029973-87029992 | MS.gene014956:intron | 45.0% | |
| CCACATTGGCATGTGTATGA+TGG | + | chr3.2:87029970-87029989 | MS.gene014956:intron | 45.0% | |
| CCAGGAAGTTCTCGTATTGT+GGG | + | chr3.2:87028562-87028581 | MS.gene014956:intron | 45.0% | |
| CCATCATACACATGCCAATG+TGG | - | chr3.2:87029973-87029992 | None:intergenic | 45.0% | |
| CCATCGTTTCTTAGTTTCGC+CGG | + | chr3.2:87027620-87027639 | MS.gene014956:CDS | 45.0% | |
| GAACACATGGAAGGGTTTGA+GGG | + | chr3.2:87029881-87029900 | MS.gene014956:intron | 45.0% | |
| GCAACTCGTGTAAGTCATGT+GGG | - | chr3.2:87030183-87030202 | None:intergenic | 45.0% | |
| GGAGAGAAAGAGAGAACTGA+GGG | + | chr3.2:87029839-87029858 | MS.gene014956:intron | 45.0% | |
| TAACCGGTGTTTCCAGGAAT+TGG | - | chr3.2:87029598-87029617 | None:intergenic | 45.0% | |
| TCCAGGAAGTTCTCGTATTG+TGG | + | chr3.2:87028561-87028580 | MS.gene014956:intron | 45.0% | |
| ! | CTCTTTGCTCTTTGGAGACT+TGG | + | chr3.2:87029777-87029796 | MS.gene014956:intron | 45.0% |
| ! | GACGAGAGAAGGTTTTTGTG+TGG | - | chr3.2:87027756-87027775 | None:intergenic | 45.0% |
| ! | TCCTCCGGCTTTTCAATTTG+TGG | - | chr3.2:87030282-87030301 | None:intergenic | 45.0% |
| !! | AGTTTCGCCGGCTTATACAA+CGG | + | chr3.2:87027632-87027651 | MS.gene014956:CDS | 45.0% |
| AACTGAAACCACCGCCGAAA+TGG | + | chr3.2:87030031-87030050 | MS.gene014956:intron | 50.0% | |
| AATTCATGGGCCATCTGCAC+GGG | - | chr3.2:87028608-87028627 | None:intergenic | 50.0% | |
| ACTGAAACCACCGCCGAAAT+GGG | + | chr3.2:87030032-87030051 | MS.gene014956:intron | 50.0% | |
| AGAGGTTGAAGTGTGGAGCT+AGG | - | chr3.2:87027835-87027854 | None:intergenic | 50.0% | |
| CAATAAACCCATTTCGGCGG+TGG | - | chr3.2:87030042-87030061 | None:intergenic | 50.0% | |
| CAATTCATGGGCCATCTGCA+CGG | - | chr3.2:87028609-87028628 | None:intergenic | 50.0% | |
| CCCACAATACGAGAACTTCC+TGG | - | chr3.2:87028565-87028584 | None:intergenic | 50.0% | |
| CCGGCGAAACTAAGAAACGA+TGG | - | chr3.2:87027623-87027642 | None:intergenic | 50.0% | |
| CCTTAAACGACTACTCCCTC+CGG | + | chr3.2:87029248-87029267 | MS.gene014956:intron | 50.0% | |
| CTAACCGGTGTCCATGATTC+TGG | + | chr3.2:87029463-87029482 | MS.gene014956:intron | 50.0% | |
| CTCACTCTTCTACACCCCAT+AGG | + | chr3.2:87029676-87029695 | MS.gene014956:intron | 50.0% | |
| GAGGTAGCCGTTGTATAAGC+CGG | - | chr3.2:87027642-87027661 | None:intergenic | 50.0% | |
| GCAGATGGCCCATGAATTGA+AGG | + | chr3.2:87028610-87028629 | MS.gene014956:CDS | 50.0% | |
| GCCACAAATTGAAAAGCCGG+AGG | + | chr3.2:87030278-87030297 | MS.gene014956:CDS | 50.0% | |
| GGAACGTAGAGGTTGAAGTG+TGG | - | chr3.2:87027842-87027861 | None:intergenic | 50.0% | |
| GGAAGTTCTCGTATTGTGGG+GGG | + | chr3.2:87028565-87028584 | MS.gene014956:intron | 50.0% | |
| GGGAGAGAAAGAGAGAACTG+AGG | + | chr3.2:87029838-87029857 | MS.gene014956:intron | 50.0% | |
| GTGGCGTTGTTGAAAAGAGC+TGG | + | chr3.2:87028094-87028113 | MS.gene014956:CDS | 50.0% | |
| TCGTGTAAGTCATGTGGGCA+TGG | - | chr3.2:87030178-87030197 | None:intergenic | 50.0% | |
| !! | AGGTGTGAAAAAGTGCCACG+TGG | + | chr3.2:87027955-87027974 | MS.gene014956:CDS | 50.0% |
| !! | GTGAAAAAGTGCCACGTGGT+GGG | + | chr3.2:87027959-87027978 | MS.gene014956:CDS | 50.0% |
| !! | TGTGAAAAAGTGCCACGTGG+TGG | + | chr3.2:87027958-87027977 | MS.gene014956:CDS | 50.0% |
| CACATGGAAGGGTTTGAGGG+CGG | + | chr3.2:87029884-87029903 | MS.gene014956:intron | 55.0% | |
| CATAACTCGTTCCCACCACG+TGG | - | chr3.2:87027973-87027992 | None:intergenic | 55.0% | |
| CATCCACGGTTTCGGTCCTA+TGG | + | chr3.2:87027778-87027797 | MS.gene014956:CDS | 55.0% | |
| CCGGAGGGAGTAGTCGTTTA+AGG | - | chr3.2:87029251-87029270 | None:intergenic | 55.0% | |
| CCTTCTCTCGTCCTCATCCA+CGG | + | chr3.2:87027764-87027783 | MS.gene014956:CDS | 55.0% | |
| CTCGTCCTCATCCACGGTTT+CGG | + | chr3.2:87027770-87027789 | MS.gene014956:CDS | 55.0% | |
| GTCCTATGGCGATGTGGCAA+TGG | + | chr3.2:87027792-87027811 | MS.gene014956:CDS | 55.0% | |
| GTTTCGGTCCTATGGCGATG+TGG | + | chr3.2:87027786-87027805 | MS.gene014956:CDS | 55.0% | |
| TAGGACCGAAACCGTGGATG+AGG | - | chr3.2:87027778-87027797 | None:intergenic | 55.0% | |
| TTGAGATAAGAGACCGGCGC+CGG | - | chr3.2:87027678-87027697 | None:intergenic | 55.0% | |
| ! | CACGTGGTGGGAACGAGTTA+TGG | + | chr3.2:87027971-87027990 | MS.gene014956:CDS | 55.0% |
| ! | GTGGTGGGAACGAGTTATGG+TGG | + | chr3.2:87027974-87027993 | MS.gene014956:CDS | 55.0% |
| ! | TACCTCCGCCGTTGTTTCAC+CGG | + | chr3.2:87027656-87027675 | MS.gene014956:CDS | 55.0% |
| AGGGTTTGAGGGCGGTGTGT+TGG | + | chr3.2:87029892-87029911 | MS.gene014956:intron | 60.0% | |
| CCGTGGATGAGGACGAGAGA+AGG | - | chr3.2:87027767-87027786 | None:intergenic | 60.0% | |
| CGCCATTGCCACATCGCCAT+AGG | - | chr3.2:87027797-87027816 | None:intergenic | 60.0% | |
| TCGCCATAGGACCGAAACCG+TGG | - | chr3.2:87027784-87027803 | None:intergenic | 60.0% | |
| !! | GACCGGCGCCGGTGAAACAA+CGG | - | chr3.2:87027667-87027686 | None:intergenic | 65.0% |
| CGCCGGTGAAACAACGGCGG+AGG | - | chr3.2:87027661-87027680 | None:intergenic | 70.0% | |
| ! | CGCCGTTGTTTCACCGGCGC+CGG | + | chr3.2:87027662-87027681 | MS.gene014956:CDS | 70.0% |
| !! | CGGCGCCGGTGAAACAACGG+CGG | - | chr3.2:87027664-87027683 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87027614 | 87030344 | 87027614 | ID=MS.gene014956 |
| chr3.2 | mRNA | 87027614 | 87030344 | 87027614 | ID=MS.gene014956.t1;Parent=MS.gene014956 |
| chr3.2 | exon | 87027614 | 87028240 | 87027614 | ID=MS.gene014956.t1.exon1;Parent=MS.gene014956.t1 |
| chr3.2 | CDS | 87027614 | 87028240 | 87027614 | ID=cds.MS.gene014956.t1;Parent=MS.gene014956.t1 |
| chr3.2 | exon | 87028392 | 87028487 | 87028392 | ID=MS.gene014956.t1.exon2;Parent=MS.gene014956.t1 |
| chr3.2 | CDS | 87028392 | 87028487 | 87028392 | ID=cds.MS.gene014956.t1;Parent=MS.gene014956.t1 |
| chr3.2 | exon | 87028566 | 87028633 | 87028566 | ID=MS.gene014956.t1.exon3;Parent=MS.gene014956.t1 |
| chr3.2 | CDS | 87028566 | 87028633 | 87028566 | ID=cds.MS.gene014956.t1;Parent=MS.gene014956.t1 |
| chr3.2 | exon | 87030227 | 87030344 | 87030227 | ID=MS.gene014956.t1.exon4;Parent=MS.gene014956.t1 |
| chr3.2 | CDS | 87030227 | 87030344 | 87030227 | ID=cds.MS.gene014956.t1;Parent=MS.gene014956.t1 |
| Gene Sequence |
| Protein sequence |
