Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015227.t1 | XP_003611628.1 | 97.3 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 4.80E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015227.t1 | Q8VZJ7 | 64.2 | 279 | 99 | 1 | 11 | 289 | 7 | 284 | 4.4e-102 | 372.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015227.t1 | G7K3W6 | 97.3 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 3.4e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015227 | MS.gene56734 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015227.t1 | MTR_5g016090 | 97.270 | 293 | 8 | 0 | 1 | 293 | 1 | 293 | 0.0 | 595 |
| MS.gene015227.t1 | MTR_4g095370 | 71.622 | 296 | 82 | 2 | 1 | 294 | 1 | 296 | 8.96e-159 | 444 |
| MS.gene015227.t1 | MTR_5g016090 | 97.059 | 170 | 5 | 0 | 1 | 170 | 1 | 170 | 7.99e-119 | 341 |
| MS.gene015227.t1 | MTR_4g095370 | 67.633 | 207 | 65 | 2 | 1 | 205 | 1 | 207 | 1.60e-98 | 288 |
| MS.gene015227.t1 | MTR_4g095370 | 67.476 | 206 | 65 | 2 | 1 | 204 | 1 | 206 | 5.82e-98 | 287 |
| MS.gene015227.t1 | MTR_8g074810 | 45.455 | 209 | 105 | 5 | 84 | 287 | 68 | 272 | 5.43e-57 | 185 |
| MS.gene015227.t1 | MTR_5g022960 | 45.673 | 208 | 106 | 4 | 84 | 287 | 79 | 283 | 5.86e-57 | 185 |
| MS.gene015227.t1 | MTR_8g074890 | 43.750 | 208 | 110 | 4 | 84 | 287 | 67 | 271 | 8.58e-55 | 179 |
| MS.gene015227.t1 | MTR_8g074880 | 43.602 | 211 | 104 | 5 | 84 | 286 | 116 | 319 | 1.46e-53 | 177 |
| MS.gene015227.t1 | MTR_3g114670 | 36.525 | 282 | 151 | 7 | 13 | 286 | 12 | 273 | 2.89e-52 | 172 |
| MS.gene015227.t1 | MTR_8g074830 | 43.269 | 208 | 111 | 4 | 84 | 287 | 71 | 275 | 3.13e-52 | 172 |
| MS.gene015227.t1 | MTR_2g020800 | 42.222 | 225 | 117 | 6 | 69 | 286 | 28 | 246 | 2.33e-49 | 166 |
| MS.gene015227.t1 | MTR_6g009440 | 42.439 | 205 | 110 | 5 | 86 | 286 | 54 | 254 | 5.21e-49 | 165 |
| MS.gene015227.t1 | MTR_2g020800 | 42.731 | 227 | 115 | 7 | 69 | 286 | 28 | 248 | 1.72e-48 | 164 |
| MS.gene015227.t1 | MTR_1g116810 | 41.148 | 209 | 118 | 4 | 84 | 291 | 76 | 280 | 5.10e-47 | 159 |
| MS.gene015227.t1 | MTR_4g118560 | 40.807 | 223 | 117 | 6 | 73 | 286 | 27 | 243 | 5.16e-47 | 159 |
| MS.gene015227.t1 | MTR_8g074870 | 42.453 | 212 | 93 | 6 | 84 | 287 | 29 | 219 | 1.48e-46 | 156 |
| MS.gene015227.t1 | MTR_3g114610 | 41.346 | 208 | 108 | 7 | 84 | 286 | 97 | 295 | 3.68e-44 | 152 |
| MS.gene015227.t1 | MTR_3g114590 | 41.627 | 209 | 105 | 5 | 84 | 286 | 65 | 262 | 5.08e-44 | 158 |
| MS.gene015227.t1 | MTR_3g114590 | 36.036 | 222 | 115 | 10 | 68 | 286 | 262 | 459 | 2.73e-29 | 117 |
| MS.gene015227.t1 | MTR_5g022960 | 38.281 | 128 | 76 | 2 | 84 | 211 | 79 | 203 | 2.30e-23 | 95.1 |
| MS.gene015227.t1 | MTR_3g051200 | 37.692 | 130 | 69 | 5 | 98 | 223 | 25 | 146 | 4.41e-18 | 79.7 |
| MS.gene015227.t1 | MTR_6g053720 | 24.046 | 262 | 166 | 7 | 27 | 284 | 4 | 236 | 4.68e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015227.t1 | AT4G33910 | 64.158 | 279 | 99 | 1 | 11 | 289 | 7 | 284 | 9.51e-133 | 378 |
| MS.gene015227.t1 | AT2G23096 | 55.197 | 279 | 114 | 4 | 13 | 291 | 6 | 273 | 3.01e-109 | 318 |
| MS.gene015227.t1 | AT1G20270 | 37.324 | 284 | 154 | 9 | 10 | 286 | 14 | 280 | 1.58e-56 | 184 |
| MS.gene015227.t1 | AT3G28490 | 44.660 | 206 | 105 | 4 | 86 | 286 | 35 | 236 | 3.59e-53 | 175 |
| MS.gene015227.t1 | AT5G66060 | 42.584 | 209 | 113 | 4 | 83 | 287 | 78 | 283 | 4.20e-53 | 175 |
| MS.gene015227.t1 | AT3G28480 | 42.439 | 205 | 110 | 4 | 86 | 286 | 59 | 259 | 2.19e-50 | 169 |
| MS.gene015227.t1 | AT4G35810 | 39.904 | 208 | 116 | 5 | 83 | 285 | 80 | 283 | 5.49e-49 | 164 |
| MS.gene015227.t1 | AT4G35810 | 39.904 | 208 | 116 | 5 | 83 | 285 | 80 | 283 | 5.49e-49 | 164 |
| MS.gene015227.t1 | AT2G17720 | 40.865 | 208 | 112 | 5 | 84 | 285 | 81 | 283 | 9.33e-49 | 164 |
| MS.gene015227.t1 | AT5G18900 | 42.130 | 216 | 116 | 5 | 77 | 286 | 31 | 243 | 6.32e-47 | 159 |
| MS.gene015227.t1 | AT3G06300 | 41.346 | 208 | 111 | 5 | 86 | 286 | 41 | 244 | 5.09e-46 | 157 |
| MS.gene015227.t1 | AT2G43080 | 37.559 | 213 | 128 | 3 | 78 | 289 | 72 | 280 | 2.07e-45 | 155 |
| MS.gene015227.t1 | AT3G28480 | 39.713 | 209 | 118 | 4 | 86 | 286 | 59 | 267 | 1.56e-42 | 149 |
| MS.gene015227.t1 | AT4G35820 | 35.533 | 197 | 96 | 6 | 83 | 270 | 88 | 262 | 8.99e-34 | 124 |
| MS.gene015227.t1 | AT5G66060 | 40.690 | 145 | 81 | 3 | 84 | 228 | 79 | 218 | 3.31e-28 | 109 |
| MS.gene015227.t1 | AT1G20270 | 30.542 | 203 | 127 | 5 | 9 | 211 | 13 | 201 | 7.65e-25 | 99.4 |
| MS.gene015227.t1 | AT1G20270 | 30.542 | 203 | 127 | 5 | 9 | 211 | 13 | 201 | 7.65e-25 | 99.4 |
| MS.gene015227.t1 | AT4G25600 | 28.704 | 216 | 123 | 5 | 74 | 286 | 50 | 237 | 5.48e-18 | 82.4 |
| MS.gene015227.t1 | AT4G25600 | 28.358 | 201 | 109 | 6 | 91 | 286 | 3 | 173 | 2.59e-14 | 71.2 |
| MS.gene015227.t1 | AT4G25600 | 28.358 | 201 | 109 | 6 | 91 | 286 | 15 | 185 | 2.67e-14 | 71.2 |
| MS.gene015227.t1 | AT4G25600 | 28.141 | 199 | 112 | 5 | 91 | 286 | 6 | 176 | 2.74e-14 | 71.2 |
Find 72 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTACTTCGATTCCATTTC+AGG | 0.136860 | 5.4:-9541606 | MS.gene015227:intron |
| TGTTCTGCACTTGCAAAATT+AGG | 0.198134 | 5.4:+9540825 | None:intergenic |
| AACATGGTCTCCCCACCTTC+TGG | 0.295643 | 5.4:+9537478 | None:intergenic |
| GCATTCAATCCCGCGGAATA+TGG | 0.304254 | 5.4:-9539083 | MS.gene015227:CDS |
| GGGAGCTGCCCCGTTATTAA+AGG | 0.306596 | 5.4:-9535988 | MS.gene015227:CDS |
| TTCTTTCTCGCTGGTTTCTT+CGG | 0.322163 | 5.4:-9541872 | MS.gene015227:CDS |
| CACTTCTCCCCTTTAATAAC+GGG | 0.340000 | 5.4:+9535979 | None:intergenic |
| ATATAACATCCTCCGCTATA+AGG | 0.351944 | 5.4:-9539135 | MS.gene015227:CDS |
| TTACCCTTTGGCTCTCTTGT+GGG | 0.364054 | 5.4:+9539060 | None:intergenic |
| AAGAATTCACAAACCTGAAA+TGG | 0.370922 | 5.4:+9541593 | None:intergenic |
| CCGGATCAATTGTACCATTA+GGG | 0.382344 | 5.4:+9537254 | None:intergenic |
| CTTCGTTCTCAAGCTCCAAT+TGG | 0.383586 | 5.4:+9541934 | None:intergenic |
| ACCGGATCAATTGTACCATT+AGG | 0.386423 | 5.4:+9537253 | None:intergenic |
| GGAGACCATGTTTCCGTTTG+AGG | 0.393798 | 5.4:-9537467 | MS.gene015227:intron |
| TCGCGTAACATCAATCTTGA+TGG | 0.411469 | 5.4:+9540762 | None:intergenic |
| CAGTTTCTTCCATTACTCTC+AGG | 0.413346 | 5.4:-9541846 | MS.gene015227:intron |
| TGCATCTTCTTCTTTCTCGC+TGG | 0.415401 | 5.4:-9541881 | MS.gene015227:CDS |
| CGAAAACGGTTAAAGCCAAT+TGG | 0.420066 | 5.4:-9541949 | MS.gene015227:CDS |
| GAAAGAAGAAGATGCATAAG+AGG | 0.422059 | 5.4:+9541888 | None:intergenic |
| CCACTTCTCCCCTTTAATAA+CGG | 0.432353 | 5.4:+9535978 | None:intergenic |
| CCCTAATGGTACAATTGATC+CGG | 0.439660 | 5.4:-9537254 | MS.gene015227:intron |
| GATACCTCTCCATGAGTCTT+GGG | 0.445486 | 5.4:+9539942 | None:intergenic |
| GGAGCTGCCCCGTTATTAAA+GGG | 0.447230 | 5.4:-9535987 | MS.gene015227:CDS |
| CTTACCCTTTGGCTCTCTTG+TGG | 0.448126 | 5.4:+9539059 | None:intergenic |
| GGGTTGCTACAAAGTGGATA+AGG | 0.448780 | 5.4:-9535957 | MS.gene015227:CDS |
| CAGCGCTTCTGAGGACAAAA+CGG | 0.463571 | 5.4:-9540012 | MS.gene015227:CDS |
| TGATACCTCTCCATGAGTCT+TGG | 0.468148 | 5.4:+9539941 | None:intergenic |
| GGTTGCTACAAAGTGGATAA+GGG | 0.497654 | 5.4:-9535956 | MS.gene015227:CDS |
| AATCCAAATGAAAGCGAAAA+CGG | 0.504969 | 5.4:-9541963 | None:intergenic |
| TCTTGTGGGCCATATTCCGC+GGG | 0.507942 | 5.4:+9539074 | None:intergenic |
| GAGCACCGTTTGTTGCATGC+TGG | 0.515078 | 5.4:-9541647 | MS.gene015227:CDS |
| AGCGCTTCTGAGGACAAAAC+GGG | 0.516147 | 5.4:-9540011 | MS.gene015227:CDS |
| TTGTTGCATGCTGGAGAGTC+CGG | 0.518286 | 5.4:-9541638 | MS.gene015227:CDS |
| TAACAGATGTTCCAGAAGGT+GGG | 0.520217 | 5.4:-9537489 | MS.gene015227:CDS |
| TGGCGTGAGAGTGAGATTGC+TGG | 0.520269 | 5.4:-9541693 | MS.gene015227:CDS |
| AACATCCTCCGCTATAAGGT+TGG | 0.521133 | 5.4:-9539131 | MS.gene015227:CDS |
| CCGTTATTAAAGGGGAGAAG+TGG | 0.527804 | 5.4:-9535978 | MS.gene015227:CDS |
| TAATAACGGGGCAGCTCCCA+TGG | 0.528613 | 5.4:+9535992 | None:intergenic |
| TTAACAGATGTTCCAGAAGG+TGG | 0.530944 | 5.4:-9537490 | MS.gene015227:CDS |
| AGAAACAGAGGAAGGTACAA+AGG | 0.544545 | 5.4:-9540736 | MS.gene015227:CDS |
| ACTCTCCAGCATGCAACAAA+CGG | 0.553944 | 5.4:+9541642 | None:intergenic |
| AACAGATGTTCCAGAAGGTG+GGG | 0.556390 | 5.4:-9537488 | MS.gene015227:CDS |
| CGAAGTAATGAAATTATCAC+CGG | 0.556524 | 5.4:+9541619 | None:intergenic |
| CTCTTGTGGGCCATATTCCG+CGG | 0.560435 | 5.4:+9539073 | None:intergenic |
| CGTTATTAAAGGGGAGAAGT+GGG | 0.569773 | 5.4:-9535977 | MS.gene015227:CDS |
| CTTTGGCAGACATCACTCCA+TGG | 0.570191 | 5.4:-9536009 | MS.gene015227:intron |
| ATGTGATAGCATAATTGAGA+TGG | 0.580962 | 5.4:-9540802 | MS.gene015227:CDS |
| ATCAAGCCTCAGAAGGGAGA+CGG | 0.584518 | 5.4:-9537298 | MS.gene015227:CDS |
| ATGGCCCACAAGAGAGCCAA+AGG | 0.587118 | 5.4:-9539064 | MS.gene015227:CDS |
| TGTGTAGAATGGGTCGAACA+TGG | 0.592846 | 5.4:-9537359 | MS.gene015227:intron |
| GAAACAGAGGAAGGTACAAA+GGG | 0.602245 | 5.4:-9540735 | MS.gene015227:CDS |
| AGAAGTCCGTCTCCCTTCTG+AGG | 0.603684 | 5.4:+9537292 | None:intergenic |
| TTAGGAAAGTATAAAGCGCG+TGG | 0.604523 | 5.4:+9540843 | None:intergenic |
| TTTGGCAGACATCACTCCAT+GGG | 0.605744 | 5.4:-9536008 | MS.gene015227:intron |
| AGAAGTGGGTTGCTACAAAG+TGG | 0.608156 | 5.4:-9535963 | MS.gene015227:CDS |
| TATGTTTATCAGCGCTTCTG+AGG | 0.608404 | 5.4:-9540021 | MS.gene015227:CDS |
| TTTGTCCAACCTTATAGCGG+AGG | 0.613087 | 5.4:+9539126 | None:intergenic |
| ATCAAGATTGATGTTACGCG+AGG | 0.628769 | 5.4:-9540760 | MS.gene015227:CDS |
| TATTTAACAGATGTTCCAGA+AGG | 0.629276 | 5.4:-9537493 | MS.gene015227:CDS |
| AAAATCGGTGAAGGATGAGA+CGG | 0.638103 | 5.4:-9541669 | MS.gene015227:CDS |
| TGGCCCACAAGAGAGCCAAA+GGG | 0.641180 | 5.4:-9539063 | MS.gene015227:intron |
| CGCGAGGGAGAAACAGAGGA+AGG | 0.642901 | 5.4:-9540744 | MS.gene015227:CDS |
| TAGCATAATTGAGATGGCAA+AGG | 0.646432 | 5.4:-9540796 | MS.gene015227:CDS |
| TAGGAAAGTATAAAGCGCGT+GGG | 0.646893 | 5.4:+9540844 | None:intergenic |
| ATGCATAAGAGGAAAACAGA+AGG | 0.650557 | 5.4:+9541899 | None:intergenic |
| CTATGATGCATTCAATCCCG+CGG | 0.659764 | 5.4:-9539090 | MS.gene015227:CDS |
| GAGCTGCCCCGTTATTAAAG+GGG | 0.661369 | 5.4:-9535986 | MS.gene015227:CDS |
| GTACAAAGGGAATCAGAACA+AGG | 0.662305 | 5.4:-9540722 | MS.gene015227:intron |
| TCAAGATTGATGTTACGCGA+GGG | 0.665505 | 5.4:-9540759 | MS.gene015227:CDS |
| AATTCCCAAGACTCATGGAG+AGG | 0.667424 | 5.4:-9539946 | MS.gene015227:intron |
| GTTACGCGAGGGAGAAACAG+AGG | 0.681875 | 5.4:-9540748 | MS.gene015227:CDS |
| ACTTCTCCCCTTTAATAACG+GGG | 0.700100 | 5.4:+9535980 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+GGG | + | chr5.4:9541295-9541276 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr5.4:9541277-9541296 | MS.gene015227:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr5.4:9541296-9541277 | None:intergenic | 0.0% |
| !! | AAATAGAAATTCAAAAAATA+TGG | - | chr5.4:9539385-9539404 | MS.gene015227:intron | 10.0% |
| !! | AAGTTCAATTAAAAAAATAA+AGG | + | chr5.4:9538974-9538993 | None:intergenic | 10.0% |
| !!! | AATGTAAATGTAAAATTTTA+AGG | + | chr5.4:9540180-9540199 | None:intergenic | 10.0% |
| !!! | ATAACAATTTATTCAAATTT+TGG | + | chr5.4:9536728-9536747 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTCAAATAATTAT+TGG | - | chr5.4:9536599-9536618 | MS.gene015227:intron | 10.0% |
| !!! | ATTTTTGAGTTTAATAAAAT+AGG | - | chr5.4:9539240-9539259 | MS.gene015227:intron | 10.0% |
| !!! | ATTTTTTTATTTTGTTTTAC+TGG | - | chr5.4:9536126-9536145 | MS.gene015227:intron | 10.0% |
| !!! | TCACTAATTTTAAAAAAATA+AGG | - | chr5.4:9541235-9541254 | MS.gene015227:intron | 10.0% |
| !!! | TTTTTGAGTTTAATAAAATA+GGG | - | chr5.4:9539241-9539260 | MS.gene015227:intron | 10.0% |
| !! | ACTAAATTCATACAATATTT+CGG | - | chr5.4:9539993-9540012 | MS.gene015227:CDS | 15.0% |
| !! | ACTTACAAATAAATTCTAAT+TGG | - | chr5.4:9539798-9539817 | MS.gene015227:intron | 15.0% |
| !! | TAAATTTCAAAAGAAAGTAA+TGG | - | chr5.4:9541085-9541104 | MS.gene015227:intron | 15.0% |
| !!! | AAAAAGTTCGATTTTAAAAT+AGG | - | chr5.4:9539211-9539230 | MS.gene015227:intron | 15.0% |
| !!! | AAAAGTTCGATTTTAAAATA+GGG | - | chr5.4:9539212-9539231 | MS.gene015227:intron | 15.0% |
| !!! | ATGCTAATGATTATTAATTT+TGG | + | chr5.4:9540077-9540096 | None:intergenic | 15.0% |
| !!! | GAATAAATTGTTATTGTTTT+GGG | - | chr5.4:9536734-9536753 | MS.gene015227:intron | 15.0% |
| !!! | TGAATAAATTGTTATTGTTT+TGG | - | chr5.4:9536733-9536752 | MS.gene015227:intron | 15.0% |
| !!! | TTTTGAGTTTAATAAAATAG+GGG | - | chr5.4:9539242-9539261 | MS.gene015227:intron | 15.0% |
| !! | AATAATGTTAAGTAAGAGAA+AGG | - | chr5.4:9540819-9540838 | MS.gene015227:CDS | 20.0% |
| !! | ACAAGAATAAAAATACTAAC+CGG | + | chr5.4:9540657-9540676 | None:intergenic | 20.0% |
| !! | ACTGTGATTTAATCAAAAAT+TGG | - | chr5.4:9537256-9537275 | MS.gene015227:CDS | 20.0% |
| !! | ACTTAACATTATTTCATTAC+TGG | + | chr5.4:9540812-9540831 | None:intergenic | 20.0% |
| !! | ATAATGTTAAGTAAGAGAAA+GGG | - | chr5.4:9540820-9540839 | MS.gene015227:CDS | 20.0% |
| !! | CAATCTTTCTATATAATCTT+TGG | - | chr5.4:9541863-9541882 | MS.gene015227:CDS | 20.0% |
| !! | GCATTACAATTAAAACATAA+AGG | - | chr5.4:9538438-9538457 | MS.gene015227:intron | 20.0% |
| !! | TAAAGGGATTATTATTAACA+AGG | + | chr5.4:9539287-9539306 | None:intergenic | 20.0% |
| !! | TGAATAAATTTAGTTGAGAA+TGG | - | chr5.4:9540142-9540161 | MS.gene015227:intron | 20.0% |
| !! | TGCAACAAATGTAAAAATAT+AGG | + | chr5.4:9539003-9539022 | None:intergenic | 20.0% |
| !! | TTAATCAAAAATTGGAGATA+CGG | - | chr5.4:9537264-9537283 | MS.gene015227:CDS | 20.0% |
| !! | TTCATGAGTTTGATAAAATA+GGG | + | chr5.4:9538945-9538964 | None:intergenic | 20.0% |
| !! | TTTACATTTACATTCCTTTA+AGG | - | chr5.4:9540186-9540205 | MS.gene015227:intron | 20.0% |
| !! | TTTCATGAGTTTGATAAAAT+AGG | + | chr5.4:9538946-9538965 | None:intergenic | 20.0% |
| !!! | AAAATCAAAAAGAACTTGTT+TGG | + | chr5.4:9538665-9538684 | None:intergenic | 20.0% |
| !!! | AAACATTTTAGTTCTGTTTT+GGG | + | chr5.4:9538171-9538190 | None:intergenic | 20.0% |
| !!! | AAAGTTCGATTTTAAAATAG+GGG | - | chr5.4:9539213-9539232 | MS.gene015227:intron | 20.0% |
| !!! | AATATAAGATGTTTTCAATC+TGG | - | chr5.4:9541565-9541584 | MS.gene015227:intron | 20.0% |
| !!! | ATCAATTTAAAGTGAATCAT+GGG | + | chr5.4:9537734-9537753 | None:intergenic | 20.0% |
| !!! | ATTTTCAATGTTACTTGAAT+AGG | - | chr5.4:9536927-9536946 | MS.gene015227:intron | 20.0% |
| !!! | ATTTTTTATTCGCTTTTTTG+TGG | - | chr5.4:9537698-9537717 | MS.gene015227:intron | 20.0% |
| !!! | CTGTATAATTTGCATATTTA+AGG | - | chr5.4:9540875-9540894 | MS.gene015227:intron | 20.0% |
| !!! | GGTTTTGTAACAAATTTAAA+TGG | - | chr5.4:9537230-9537249 | MS.gene015227:intron | 20.0% |
| !!! | TAAACATTTTAGTTCTGTTT+TGG | + | chr5.4:9538172-9538191 | None:intergenic | 20.0% |
| !!! | TTGGTTCAATCATTTAATTT+TGG | - | chr5.4:9536457-9536476 | MS.gene015227:intron | 20.0% |
| !!! | TTGTAAATTTTGATTAGGAT+CGG | - | chr5.4:9536663-9536682 | MS.gene015227:intron | 20.0% |
| !!! | TTTGAGTTTAATAAAATAGG+GGG | - | chr5.4:9539243-9539262 | MS.gene015227:intron | 20.0% |
| !!! | TTTTTTTAGTGATATTCTCT+TGG | + | chr5.4:9539541-9539560 | None:intergenic | 20.0% |
| ! | AAAATAAGGTAGAGAAAATG+AGG | - | chr5.4:9541249-9541268 | MS.gene015227:intron | 25.0% |
| ! | AAATAGAAGAGCAAACATAA+AGG | + | chr5.4:9537452-9537471 | None:intergenic | 25.0% |
| ! | ACAAAAATTACGGTCTTAAA+TGG | + | chr5.4:9538510-9538529 | None:intergenic | 25.0% |
| ! | ACAATTAAAACATAAAGGCA+AGG | - | chr5.4:9538443-9538462 | MS.gene015227:intron | 25.0% |
| ! | ACAGCAAATATGAAAATAGA+GGG | - | chr5.4:9539185-9539204 | MS.gene015227:intron | 25.0% |
| ! | ACATTATTTCATTACTGGTA+TGG | + | chr5.4:9540807-9540826 | None:intergenic | 25.0% |
| ! | ATGAAAGACATGTTTGTATA+TGG | - | chr5.4:9538408-9538427 | MS.gene015227:intron | 25.0% |
| ! | ATTGTCTTTAGATACACTAT+TGG | + | chr5.4:9539077-9539096 | None:intergenic | 25.0% |
| ! | CTCATGTATTGAAACATTAA+AGG | + | chr5.4:9537661-9537680 | None:intergenic | 25.0% |
| ! | CTTTAATGTTTCAATACATG+AGG | - | chr5.4:9537659-9537678 | MS.gene015227:intron | 25.0% |
| ! | GAGTAGAATAATTAACTACA+TGG | - | chr5.4:9537209-9537228 | MS.gene015227:intron | 25.0% |
| ! | GCATTATTATTGTGTAGAAT+GGG | - | chr5.4:9540520-9540539 | MS.gene015227:intron | 25.0% |
| ! | TAGAGTTCATCTTCTATAAT+TGG | - | chr5.4:9539305-9539324 | MS.gene015227:intron | 25.0% |
| ! | TATAGAAGATGAACTCTAAA+GGG | + | chr5.4:9539303-9539322 | None:intergenic | 25.0% |
| ! | TCATGAGTTTGATAAAATAG+GGG | + | chr5.4:9538944-9538963 | None:intergenic | 25.0% |
| ! | TCATGTAAACAGAAAAATCA+CGG | + | chr5.4:9536334-9536353 | None:intergenic | 25.0% |
| ! | TGCATTATTATTGTGTAGAA+TGG | - | chr5.4:9540519-9540538 | MS.gene015227:intron | 25.0% |
| ! | TGGTATAAAATGTTGTCAAA+TGG | - | chr5.4:9536767-9536786 | MS.gene015227:intron | 25.0% |
| ! | TTATAGAAGATGAACTCTAA+AGG | + | chr5.4:9539304-9539323 | None:intergenic | 25.0% |
| !! | AAAACTCGTAACTTGTAATT+TGG | - | chr5.4:9539773-9539792 | MS.gene015227:intron | 25.0% |
| !! | AAAGTAGATTTTACCTCAAA+CGG | + | chr5.4:9540438-9540457 | None:intergenic | 25.0% |
| !! | AATAGACTTAATTACGCTTT+TGG | - | chr5.4:9538916-9538935 | MS.gene015227:intron | 25.0% |
| !! | AATTGATGATTATACTTACG+AGG | - | chr5.4:9537747-9537766 | MS.gene015227:intron | 25.0% |
| !! | AATTGATTCATTGGTAAACA+TGG | + | chr5.4:9538474-9538493 | None:intergenic | 25.0% |
| !! | ACACACAATTTCAAGATTTT+AGG | - | chr5.4:9540919-9540938 | MS.gene015227:intron | 25.0% |
| !! | CATCAATTTAAAGTGAATCA+TGG | + | chr5.4:9537735-9537754 | None:intergenic | 25.0% |
| !! | TAATGTTGTTGGATTTTAGA+AGG | + | chr5.4:9537781-9537800 | None:intergenic | 25.0% |
| !! | TTCAATGAAATGCTTTTACT+GGG | - | chr5.4:9541677-9541696 | MS.gene015227:CDS | 25.0% |
| !! | TTGCATATTTAAGGTTTGAA+TGG | - | chr5.4:9540884-9540903 | MS.gene015227:intron | 25.0% |
| !! | TTTACATGATGTTTTATGCT+AGG | - | chr5.4:9536345-9536364 | MS.gene015227:intron | 25.0% |
| !!! | AACATTTTAGTTCTGTTTTG+GGG | + | chr5.4:9538170-9538189 | None:intergenic | 25.0% |
| !!! | AAGTTCGATTTTAAAATAGG+GGG | - | chr5.4:9539214-9539233 | MS.gene015227:intron | 25.0% |
| !!! | AGTTTTGTGAATTGATTCAT+TGG | + | chr5.4:9538483-9538502 | None:intergenic | 25.0% |
| !!! | CAGTGTTGTAAATTTTGATT+AGG | - | chr5.4:9536658-9536677 | MS.gene015227:intron | 25.0% |
| !!! | GTGTTTTTTGCACTAAAAAA+TGG | - | chr5.4:9539039-9539058 | MS.gene015227:intron | 25.0% |
| !!! | TATAATTTTGAGGATTGCAT+TGG | - | chr5.4:9540561-9540580 | MS.gene015227:intron | 25.0% |
| AAAGTGAAAATCACACCTTA+AGG | + | chr5.4:9541348-9541367 | None:intergenic | 30.0% | |
| AACAATTTGTGAAGGTAGTA+AGG | - | chr5.4:9538211-9538230 | MS.gene015227:intron | 30.0% | |
| AAGAAAAAACCTGAGAGTAA+TGG | + | chr5.4:9536055-9536074 | None:intergenic | 30.0% | |
| AAGAATTCACAAACCTGAAA+TGG | + | chr5.4:9536299-9536318 | None:intergenic | 30.0% | |
| AAGCTCCTGATATGATTTAA+TGG | + | chr5.4:9537820-9537839 | None:intergenic | 30.0% | |
| AATTCATCTAGTAAGATGAG+TGG | + | chr5.4:9539732-9539751 | None:intergenic | 30.0% | |
| ACAAGAACTAAGCTATTGTT+TGG | - | chr5.4:9537315-9537334 | MS.gene015227:CDS | 30.0% | |
| ACACCTTCATAAAAGTAAGT+TGG | - | chr5.4:9541389-9541408 | MS.gene015227:intron | 30.0% | |
| ACTTACAAATGTATTGAAGC+TGG | - | chr5.4:9537355-9537374 | MS.gene015227:CDS | 30.0% | |
| ACTTGAAAACTTACACACAT+AGG | - | chr5.4:9539653-9539672 | MS.gene015227:intron | 30.0% | |
| AGAGATTAAAGACAAGAGAA+GGG | - | chr5.4:9541113-9541132 | MS.gene015227:intron | 30.0% | |
| ATAAGAGACACCTTCATAAA+AGG | - | chr5.4:9541444-9541463 | MS.gene015227:intron | 30.0% | |
| ATGAGTTTGATAAAATAGGG+GGG | + | chr5.4:9538942-9538961 | None:intergenic | 30.0% | |
| ATGTGATAGCATAATTGAGA+TGG | - | chr5.4:9537087-9537106 | MS.gene015227:intron | 30.0% | |
| ATGTTATATGCCTGAAACAT+GGG | + | chr5.4:9538743-9538762 | None:intergenic | 30.0% | |
| ATTTCATTACTGGTATGGTA+TGG | + | chr5.4:9540802-9540821 | None:intergenic | 30.0% | |
| CAAACATGTCTTTCATGTAA+TGG | + | chr5.4:9538404-9538423 | None:intergenic | 30.0% | |
| CATGAGTTTGATAAAATAGG+GGG | + | chr5.4:9538943-9538962 | None:intergenic | 30.0% | |
| CATTCTGAGTAAAAAACAGT+TGG | + | chr5.4:9540338-9540357 | None:intergenic | 30.0% | |
| CGAAGTAATGAAATTATCAC+CGG | + | chr5.4:9536273-9536292 | None:intergenic | 30.0% | |
| CTTACAAATGTATTGAAGCT+GGG | - | chr5.4:9537356-9537375 | MS.gene015227:intron | 30.0% | |
| GACAGCAAATATGAAAATAG+AGG | - | chr5.4:9539184-9539203 | MS.gene015227:intron | 30.0% | |
| GACATGTTTGTATATGGAAA+TGG | - | chr5.4:9538414-9538433 | MS.gene015227:intron | 30.0% | |
| GATGGTTTCTAAATTATCTG+AGG | - | chr5.4:9538713-9538732 | MS.gene015227:intron | 30.0% | |
| GCAGTAATAGTATACATTGA+CGG | + | chr5.4:9538601-9538620 | None:intergenic | 30.0% | |
| GTAATGTTAGTGTAATCAGT+TGG | - | chr5.4:9536438-9536457 | MS.gene015227:intron | 30.0% | |
| TAAAGACCAACAATTTGTGA+AGG | - | chr5.4:9538203-9538222 | MS.gene015227:intron | 30.0% | |
| TAGAGATTAAAGACAAGAGA+AGG | - | chr5.4:9541112-9541131 | MS.gene015227:intron | 30.0% | |
| TATTTAACAGATGTTCCAGA+AGG | - | chr5.4:9540396-9540415 | MS.gene015227:intron | 30.0% | |
| TCCAATCATATCTTGTCATA+TGG | + | chr5.4:9538571-9538590 | None:intergenic | 30.0% | |
| TCCATATGACAAGATATGAT+TGG | - | chr5.4:9538567-9538586 | MS.gene015227:intron | 30.0% | |
| TGGTTCCATTAAATCATATC+AGG | - | chr5.4:9537812-9537831 | MS.gene015227:intron | 30.0% | |
| TTAAAAATCAAGCCTCAGAA+GGG | - | chr5.4:9540585-9540604 | MS.gene015227:intron | 30.0% | |
| TTACTACCTTCACAAATTGT+TGG | + | chr5.4:9538212-9538231 | None:intergenic | 30.0% | |
| TTCCTTGAGTATGAGTATTA+AGG | - | chr5.4:9538628-9538647 | MS.gene015227:intron | 30.0% | |
| TTGAAACATTAAAGGATCAC+TGG | + | chr5.4:9537653-9537672 | None:intergenic | 30.0% | |
| TTTAAAAATCAAGCCTCAGA+AGG | - | chr5.4:9540584-9540603 | MS.gene015227:intron | 30.0% | |
| TTTATCAAGTGTGTTTCTCT+TGG | + | chr5.4:9539605-9539624 | None:intergenic | 30.0% | |
| ! | AGAACTTGTTTGGAGATAAA+AGG | + | chr5.4:9538655-9538674 | None:intergenic | 30.0% |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr5.4:9541457-9541476 | None:intergenic | 30.0% |
| ! | ATTGAAAACCTCTTCTTTTC+AGG | - | chr5.4:9538691-9538710 | MS.gene015227:intron | 30.0% |
| ! | ATTTTTGTCCAACCTTATAG+CGG | + | chr5.4:9538769-9538788 | None:intergenic | 30.0% |
| ! | CAATGTTACTTGAATAGGAT+CGG | - | chr5.4:9536932-9536951 | MS.gene015227:intron | 30.0% |
| ! | CATATTTAAGGTTTGAATGG+AGG | - | chr5.4:9540887-9540906 | MS.gene015227:intron | 30.0% |
| ! | CTTCAATGAAATGCTTTTAC+TGG | - | chr5.4:9541676-9541695 | MS.gene015227:CDS | 30.0% |
| ! | GGCAAATGCTAATATGTTTT+AGG | - | chr5.4:9539819-9539838 | MS.gene015227:intron | 30.0% |
| ! | TTAGTTGAAATCAGCGTTTT+TGG | - | chr5.4:9536368-9536387 | MS.gene015227:intron | 30.0% |
| ! | TTGGATAGACTAGTCATATA+GGG | + | chr5.4:9540319-9540338 | None:intergenic | 30.0% |
| ! | TTTTAACAAGTCACACCTTA+AGG | - | chr5.4:9541330-9541349 | MS.gene015227:intron | 30.0% |
| ! | TTTTATTCGTTGTTCCCTAA+TGG | - | chr5.4:9540621-9540640 | MS.gene015227:intron | 30.0% |
| ! | TTTTGTTCTAACTTACCCTT+TGG | + | chr5.4:9538844-9538863 | None:intergenic | 30.0% |
| ! | TTTTTGTGTGTGCCTATAAT+GGG | + | chr5.4:9539144-9539163 | None:intergenic | 30.0% |
| !! | ACACCAACTTACTTTTATGA+AGG | + | chr5.4:9541395-9541414 | None:intergenic | 30.0% |
| !! | AGGAATGTCTACTTTTAAGA+AGG | + | chr5.4:9539452-9539471 | None:intergenic | 30.0% |
| !! | CAGTAAAAGCATTTCATTGA+AGG | + | chr5.4:9541678-9541697 | None:intergenic | 30.0% |
| !! | GGAATGTCTACTTTTAAGAA+GGG | + | chr5.4:9539451-9539470 | None:intergenic | 30.0% |
| !! | TAAAGACAATCTCACTTTTG+AGG | - | chr5.4:9539087-9539106 | MS.gene015227:CDS | 30.0% |
| !! | TATGTGTGTAAGTTTTCAAG+TGG | + | chr5.4:9539654-9539673 | None:intergenic | 30.0% |
| !! | TTCTATTTCTGTGAGTCTTA+TGG | + | chr5.4:9537291-9537310 | None:intergenic | 30.0% |
| !!! | ACATTTTAGTTCTGTTTTGG+GGG | + | chr5.4:9538169-9538188 | None:intergenic | 30.0% |
| !!! | ACTTTTTTTACTCGTCTTCT+GGG | - | chr5.4:9540693-9540712 | MS.gene015227:intron | 30.0% |
| !!! | CTGTTTTTTACTCAGAATGT+CGG | - | chr5.4:9540339-9540358 | MS.gene015227:intron | 30.0% |
| !!! | GTAAAATTTTAAGGTCCTCT+GGG | + | chr5.4:9540171-9540190 | None:intergenic | 30.0% |
| !!! | TGTAAAATTTTAAGGTCCTC+TGG | + | chr5.4:9540172-9540191 | None:intergenic | 30.0% |
| !!! | TTTTTTGTGTGTGCCTATAA+TGG | + | chr5.4:9539145-9539164 | None:intergenic | 30.0% |
| AAAATCTGTGATGTCAATCG+CGG | + | chr5.4:9536860-9536879 | None:intergenic | 35.0% | |
| AAACATTAAAGGATCACTGG+AGG | + | chr5.4:9537650-9537669 | None:intergenic | 35.0% | |
| AAGGATTGTAATTGGCAAGT+CGG | - | chr5.4:9540847-9540866 | MS.gene015227:CDS | 35.0% | |
| ACAAAAATTCCCAAGACTCA+TGG | - | chr5.4:9537938-9537957 | MS.gene015227:intron | 35.0% | |
| ACAACATTATGTCACAGTGA+TGG | - | chr5.4:9537792-9537811 | MS.gene015227:intron | 35.0% | |
| AGTGAGATTGCTGGAAAAAT+CGG | - | chr5.4:9536205-9536224 | MS.gene015227:intron | 35.0% | |
| ATAGGCACACACAAAAAACA+CGG | - | chr5.4:9539147-9539166 | MS.gene015227:intron | 35.0% | |
| ATATAACATCCTCCGCTATA+AGG | - | chr5.4:9538754-9538773 | MS.gene015227:intron | 35.0% | |
| ATGCATAAGAGGAAAACAGA+AGG | + | chr5.4:9535993-9536012 | None:intergenic | 35.0% | |
| ATTTATTCTTACTCCGACCA+CGG | + | chr5.4:9538535-9538554 | None:intergenic | 35.0% | |
| CATTACTTCGATTCCATTTC+AGG | - | chr5.4:9536283-9536302 | MS.gene015227:intron | 35.0% | |
| CTGGAAATTGTTCGAAGTAA+CGG | - | chr5.4:9536145-9536164 | MS.gene015227:intron | 35.0% | |
| GAAAGAAGAAGATGCATAAG+AGG | + | chr5.4:9536004-9536023 | None:intergenic | 35.0% | |
| GACCTTAATACTCATACTCA+AGG | + | chr5.4:9538633-9538652 | None:intergenic | 35.0% | |
| GATGTTATATGCCTGAAACA+TGG | + | chr5.4:9538744-9538763 | None:intergenic | 35.0% | |
| TAGCATAATTGAGATGGCAA+AGG | - | chr5.4:9537093-9537112 | MS.gene015227:intron | 35.0% | |
| TCACTGTGACATAATGTTGT+TGG | + | chr5.4:9537792-9537811 | None:intergenic | 35.0% | |
| TCTATAGCATTACTGCATAG+CGG | - | chr5.4:9536803-9536822 | MS.gene015227:intron | 35.0% | |
| TGTTAAAAGACACCACCAAA+GGG | + | chr5.4:9541318-9541337 | None:intergenic | 35.0% | |
| TGTTATATGCCTGAAACATG+GGG | + | chr5.4:9538742-9538761 | None:intergenic | 35.0% | |
| TGTTCTGCACTTGCAAAATT+AGG | + | chr5.4:9537067-9537086 | None:intergenic | 35.0% | |
| TGTTGCAAAAATGACCACTT+GGG | + | chr5.4:9538370-9538389 | None:intergenic | 35.0% | |
| TTGTTAAAAGACACCACCAA+AGG | + | chr5.4:9541319-9541338 | None:intergenic | 35.0% | |
| TTGTTGCAAAAATGACCACT+TGG | + | chr5.4:9538371-9538390 | None:intergenic | 35.0% | |
| ! | AATGAAATGCTTTTACTGGG+TGG | - | chr5.4:9541680-9541699 | MS.gene015227:CDS | 35.0% |
| ! | ACACCTTTGATCAAAAGTGT+TGG | + | chr5.4:9536516-9536535 | None:intergenic | 35.0% |
| ! | ATCGATTTCATATTAGAGCG+AGG | - | chr5.4:9540765-9540784 | MS.gene015227:CDS | 35.0% |
| ! | GGACAGTAGCTATAATTTTG+AGG | - | chr5.4:9540551-9540570 | MS.gene015227:intron | 35.0% |
| ! | GTTGGATAGACTAGTCATAT+AGG | + | chr5.4:9540320-9540339 | None:intergenic | 35.0% |
| ! | GTTTTCCAGGAAGATGAATA+TGG | - | chr5.4:9536176-9536195 | MS.gene015227:intron | 35.0% |
| ! | TTTTACCTCAAACGGAAACA+TGG | + | chr5.4:9540430-9540449 | None:intergenic | 35.0% |
| ! | TTTTGTGTGTGCCTATAATG+GGG | + | chr5.4:9539143-9539162 | None:intergenic | 35.0% |
| !! | AAAACCTCTTCTTTTCAGGA+TGG | - | chr5.4:9538695-9538714 | MS.gene015227:intron | 35.0% |
| !! | AATTGTTCGAAGTAACGGAT+CGG | - | chr5.4:9536150-9536169 | MS.gene015227:intron | 35.0% |
| !! | CACAAATTGTTGGTCTTTAG+TGG | + | chr5.4:9538202-9538221 | None:intergenic | 35.0% |
| !! | TTTTACTCAGAATGTCGGTT+CGG | - | chr5.4:9540344-9540363 | MS.gene015227:intron | 35.0% |
| !!! | ATTTTAGTTCTGTTTTGGGG+GGG | + | chr5.4:9538167-9538186 | None:intergenic | 35.0% |
| !!! | CACTTTTTTTACTCGTCTTC+TGG | - | chr5.4:9540692-9540711 | MS.gene015227:intron | 35.0% |
| !!! | CATTTTAGTTCTGTTTTGGG+GGG | + | chr5.4:9538168-9538187 | None:intergenic | 35.0% |
| !!! | GTTTTTGGTTGAGATGATTG+CGG | - | chr5.4:9536383-9536402 | MS.gene015227:intron | 35.0% |
| !!! | TTCATCTTTTTCAACAGCTC+TGG | - | chr5.4:9537845-9537864 | MS.gene015227:intron | 35.0% |
| !!! | TTGTTTTGGGATACGCTATT+TGG | - | chr5.4:9536747-9536766 | MS.gene015227:intron | 35.0% |
| AAAATCGGTGAAGGATGAGA+CGG | - | chr5.4:9536220-9536239 | MS.gene015227:intron | 40.0% | |
| AAGACGAGAGATAGGAAGAA+AGG | - | chr5.4:9539414-9539433 | MS.gene015227:intron | 40.0% | |
| AAGTAAGAGAAAGGGCGAAA+AGG | - | chr5.4:9540828-9540847 | MS.gene015227:CDS | 40.0% | |
| ACACACAAAAAACACGGGTT+GGG | - | chr5.4:9539153-9539172 | MS.gene015227:intron | 40.0% | |
| ACCGGATCAATTGTACCATT+AGG | + | chr5.4:9540639-9540658 | None:intergenic | 40.0% | |
| ACTGGAGGACATTATGTTGA+CGG | + | chr5.4:9537635-9537654 | None:intergenic | 40.0% | |
| ACTTCTCCCCTTTAATAACG+GGG | + | chr5.4:9541912-9541931 | None:intergenic | 40.0% | |
| AGGGCGAAAAGGATTGTAAT+TGG | - | chr5.4:9540839-9540858 | MS.gene015227:CDS | 40.0% | |
| AGTGTGAAAGTCCCCATTAT+AGG | - | chr5.4:9539129-9539148 | MS.gene015227:CDS | 40.0% | |
| ATCAAGATTGATGTTACGCG+AGG | - | chr5.4:9537129-9537148 | MS.gene015227:intron | 40.0% | |
| ATGCACGTTCATCCAATTAG+AGG | - | chr5.4:9540269-9540288 | MS.gene015227:intron | 40.0% | |
| ATTATGTGAGTCGAGATGCA+GGG | + | chr5.4:9540463-9540482 | None:intergenic | 40.0% | |
| ATTGCTGGAAAAATCGGTGA+AGG | - | chr5.4:9536211-9536230 | MS.gene015227:intron | 40.0% | |
| ATTGTAATTGGCAAGTCGGT+TGG | - | chr5.4:9540851-9540870 | MS.gene015227:CDS | 40.0% | |
| CAAATGTATTGAAGCTGGGT+TGG | - | chr5.4:9537360-9537379 | MS.gene015227:intron | 40.0% | |
| CAATAGCATTTCTTCCCAAG+TGG | - | chr5.4:9538353-9538372 | MS.gene015227:intron | 40.0% | |
| CACTAAAGAAAGGCGAACTT+TGG | + | chr5.4:9539113-9539132 | None:intergenic | 40.0% | |
| CACTTCTCCCCTTTAATAAC+GGG | + | chr5.4:9541913-9541932 | None:intergenic | 40.0% | |
| CAGTTTCTTCCATTACTCTC+AGG | - | chr5.4:9536043-9536062 | MS.gene015227:intron | 40.0% | |
| CATCCAATTAGAGGCTTAGA+CGG | - | chr5.4:9540278-9540297 | MS.gene015227:intron | 40.0% | |
| CCACTTCTCCCCTTTAATAA+CGG | + | chr5.4:9541914-9541933 | None:intergenic | 40.0% | |
| CCCTAATGGTACAATTGATC+CGG | - | chr5.4:9540635-9540654 | MS.gene015227:intron | 40.0% | |
| CCGGATCAATTGTACCATTA+GGG | + | chr5.4:9540638-9540657 | None:intergenic | 40.0% | |
| CGAAAACGGTTAAAGCCAAT+TGG | - | chr5.4:9535940-9535959 | MS.gene015227:CDS | 40.0% | |
| CGTTATTAAAGGGGAGAAGT+GGG | - | chr5.4:9541912-9541931 | MS.gene015227:CDS | 40.0% | |
| CGTTCAATCAACGACCTTAA+AGG | + | chr5.4:9540203-9540222 | None:intergenic | 40.0% | |
| GAAACCATCCTGAAAAGAAG+AGG | + | chr5.4:9538702-9538721 | None:intergenic | 40.0% | |
| GAAATGCTGAGATTCACAAC+TGG | + | chr5.4:9541737-9541756 | None:intergenic | 40.0% | |
| GACCACGGGAACAAAAATTA+CGG | + | chr5.4:9538520-9538539 | None:intergenic | 40.0% | |
| GATTATACTTACGAGGAGTG+AGG | - | chr5.4:9537754-9537773 | MS.gene015227:intron | 40.0% | |
| GCGGATCGCATAAATAAAAG+AGG | + | chr5.4:9536841-9536860 | None:intergenic | 40.0% | |
| GCGTGACTTTAGGCAAAAAA+AGG | - | chr5.4:9539362-9539381 | MS.gene015227:intron | 40.0% | |
| GGGACTTTCACACTAAAGAA+AGG | + | chr5.4:9539123-9539142 | None:intergenic | 40.0% | |
| GGTTGCTACAAAGTGGATAA+GGG | - | chr5.4:9541933-9541952 | MS.gene015227:CDS | 40.0% | |
| GTACAAAGGGAATCAGAACA+AGG | - | chr5.4:9537167-9537186 | MS.gene015227:intron | 40.0% | |
| GTGAAACAGAAAAGCAGTGT+TGG | + | chr5.4:9538139-9538158 | None:intergenic | 40.0% | |
| TAACAGATGTTCCAGAAGGT+GGG | - | chr5.4:9540400-9540419 | MS.gene015227:intron | 40.0% | |
| TAGGCACACACAAAAAACAC+GGG | - | chr5.4:9539148-9539167 | MS.gene015227:intron | 40.0% | |
| TATGTTTATCAGCGCTTCTG+AGG | - | chr5.4:9537868-9537887 | MS.gene015227:intron | 40.0% | |
| TATTATGTGAGTCGAGATGC+AGG | + | chr5.4:9540464-9540483 | None:intergenic | 40.0% | |
| TCAAGATTGATGTTACGCGA+GGG | - | chr5.4:9537130-9537149 | MS.gene015227:intron | 40.0% | |
| TCGCGTAACATCAATCTTGA+TGG | + | chr5.4:9537130-9537149 | None:intergenic | 40.0% | |
| TCGGTAAATAGCACCTACAA+TGG | - | chr5.4:9536682-9536701 | MS.gene015227:intron | 40.0% | |
| TGATAAGTCACTGTGTCAGT+GGG | + | chr5.4:9539491-9539510 | None:intergenic | 40.0% | |
| TTAACAGATGTTCCAGAAGG+TGG | - | chr5.4:9540399-9540418 | MS.gene015227:intron | 40.0% | |
| TTGATAAGTCACTGTGTCAG+TGG | + | chr5.4:9539492-9539511 | None:intergenic | 40.0% | |
| TTTATTCTTACTCCGACCAC+GGG | + | chr5.4:9538534-9538553 | None:intergenic | 40.0% | |
| ! | AACAGAAAAGCAGTGTTGGA+AGG | + | chr5.4:9538135-9538154 | None:intergenic | 40.0% |
| ! | AGAAACAGAGGAAGGTACAA+AGG | - | chr5.4:9537153-9537172 | MS.gene015227:intron | 40.0% |
| ! | ATTGAAGCTGGGTTGGATTA+TGG | - | chr5.4:9537367-9537386 | MS.gene015227:intron | 40.0% |
| ! | CTTGGGAATTTTTGTTGCTC+TGG | + | chr5.4:9537933-9537952 | None:intergenic | 40.0% |
| ! | GAAACAGAGGAAGGTACAAA+GGG | - | chr5.4:9537154-9537173 | MS.gene015227:intron | 40.0% |
| ! | GATGTTTTCAATCTGGACTC+TGG | - | chr5.4:9541572-9541591 | MS.gene015227:intron | 40.0% |
| ! | GCACCAACACTTTTGATCAA+AGG | - | chr5.4:9536510-9536529 | MS.gene015227:intron | 40.0% |
| ! | GTAATTTTTGTTCCCGTGGT+CGG | - | chr5.4:9538519-9538538 | MS.gene015227:intron | 40.0% |
| ! | TAGGAAAGTATAAAGCGCGT+GGG | + | chr5.4:9537048-9537067 | None:intergenic | 40.0% |
| ! | TCTTGCTAACTTGCGCTTTA+AGG | + | chr5.4:9539949-9539968 | None:intergenic | 40.0% |
| ! | TTAGGAAAGTATAAAGCGCG+TGG | + | chr5.4:9537049-9537068 | None:intergenic | 40.0% |
| ! | TTTTGCCTAAAGTCACGCAA+AGG | + | chr5.4:9539360-9539379 | None:intergenic | 40.0% |
| ! | TTTTGTTACAAGCCACCCTT+TGG | - | chr5.4:9541300-9541319 | MS.gene015227:intron | 40.0% |
| !! | ACACACATAGGTTGATGAGT+CGG | - | chr5.4:9539665-9539684 | MS.gene015227:intron | 40.0% |
| !! | CTTTTGATCAAAGGTGTGTC+TGG | - | chr5.4:9536519-9536538 | MS.gene015227:intron | 40.0% |
| !! | TTCTTTCTCGCTGGTTTCTT+CGG | - | chr5.4:9536017-9536036 | MS.gene015227:intron | 40.0% |
| AACAGATGTTCCAGAAGGTG+GGG | - | chr5.4:9540401-9540420 | MS.gene015227:intron | 45.0% | |
| AACATCCTCCGCTATAAGGT+TGG | - | chr5.4:9538758-9538777 | MS.gene015227:intron | 45.0% | |
| AAGTCACGCAAAGGTAGAGA+CGG | + | chr5.4:9539351-9539370 | None:intergenic | 45.0% | |
| AATTCCCAAGACTCATGGAG+AGG | - | chr5.4:9537943-9537962 | MS.gene015227:intron | 45.0% | |
| ACTCTCCAGCATGCAACAAA+CGG | + | chr5.4:9536250-9536269 | None:intergenic | 45.0% | |
| ACTTCCTCTCTACTAGTGAG+TGG | - | chr5.4:9537548-9537567 | MS.gene015227:intron | 45.0% | |
| AGAGAAGGGACTTACATCAC+AGG | - | chr5.4:9541127-9541146 | MS.gene015227:intron | 45.0% | |
| AGTTGAGAATGGTTTCCCAG+AGG | - | chr5.4:9540153-9540172 | MS.gene015227:intron | 45.0% | |
| CAAAAATGAAGCCACCTGCA+TGG | + | chr5.4:9540373-9540392 | None:intergenic | 45.0% | |
| CACACACAAAAAACACGGGT+TGG | - | chr5.4:9539152-9539171 | MS.gene015227:intron | 45.0% | |
| CATGTATGTCAGTGTAGCGT+TGG | + | chr5.4:9536561-9536580 | None:intergenic | 45.0% | |
| CCGTTATTAAAGGGGAGAAG+TGG | - | chr5.4:9541911-9541930 | MS.gene015227:CDS | 45.0% | |
| CGAGAGATAGGAAGAAAGGT+AGG | - | chr5.4:9539418-9539437 | MS.gene015227:intron | 45.0% | |
| CTATGATGCATTCAATCCCG+CGG | - | chr5.4:9538799-9538818 | MS.gene015227:intron | 45.0% | |
| CTCTACCTTTGCGTGACTTT+AGG | - | chr5.4:9539352-9539371 | MS.gene015227:intron | 45.0% | |
| CTTCGTTCTCAAGCTCCAAT+TGG | + | chr5.4:9535958-9535977 | None:intergenic | 45.0% | |
| GATACCTCTCCATGAGTCTT+GGG | + | chr5.4:9537950-9537969 | None:intergenic | 45.0% | |
| GATCCGTCTAAGCCTCTAAT+TGG | + | chr5.4:9540284-9540303 | None:intergenic | 45.0% | |
| GGAAGACTTCATGCAGTTCT+TGG | - | chr5.4:9537569-9537588 | MS.gene015227:intron | 45.0% | |
| GGACGTAAAAGACGAGAGAT+AGG | - | chr5.4:9539406-9539425 | MS.gene015227:intron | 45.0% | |
| GGGTTGCTACAAAGTGGATA+AGG | - | chr5.4:9541932-9541951 | MS.gene015227:CDS | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr5.4:9541315-9541334 | None:intergenic | 45.0% | |
| TACATTAGCAAGCGAGCAGT+GGG | + | chr5.4:9537988-9538007 | None:intergenic | 45.0% | |
| TACCAAAGTAGCGCCATTGT+AGG | + | chr5.4:9536698-9536717 | None:intergenic | 45.0% | |
| TCACGCCATATTCATCTTCC+TGG | + | chr5.4:9536184-9536203 | None:intergenic | 45.0% | |
| TCACTAGTAGAGAGGAAGTC+AGG | + | chr5.4:9537547-9537566 | None:intergenic | 45.0% | |
| TCATGCAGTTCTTGGATCAC+AGG | - | chr5.4:9537577-9537596 | MS.gene015227:intron | 45.0% | |
| TCGACGAGTCATGACATGTT+TGG | - | chr5.4:9536624-9536643 | MS.gene015227:intron | 45.0% | |
| TCTTCCACTCACTAGTAGAG+AGG | + | chr5.4:9537555-9537574 | None:intergenic | 45.0% | |
| TGATACCTCTCCATGAGTCT+TGG | + | chr5.4:9537951-9537970 | None:intergenic | 45.0% | |
| TGCATCTTCTTCTTTCTCGC+TGG | - | chr5.4:9536008-9536027 | MS.gene015227:intron | 45.0% | |
| TGTGTAGAATGGGTCGAACA+TGG | - | chr5.4:9540530-9540549 | MS.gene015227:intron | 45.0% | |
| TTACATTAGCAAGCGAGCAG+TGG | + | chr5.4:9537989-9538008 | None:intergenic | 45.0% | |
| TTTGGCAGACATCACTCCAT+GGG | - | chr5.4:9541881-9541900 | MS.gene015227:CDS | 45.0% | |
| TTTGTCCAACCTTATAGCGG+AGG | + | chr5.4:9538766-9538785 | None:intergenic | 45.0% | |
| ! | GACCGTAATTTTTGTTCCCG+TGG | - | chr5.4:9538515-9538534 | MS.gene015227:intron | 45.0% |
| ! | GTGTTCCTCAGATTTTGAGC+TGG | - | chr5.4:9537020-9537039 | MS.gene015227:intron | 45.0% |
| ! | GTTTTCAATCTGGACTCTGG+AGG | - | chr5.4:9541575-9541594 | MS.gene015227:intron | 45.0% |
| !! | AGAAGTGGGTTGCTACAAAG+TGG | - | chr5.4:9541926-9541945 | MS.gene015227:CDS | 45.0% |
| !! | CATCACGCAAAAGCATTGAC+AGG | + | chr5.4:9538291-9538310 | None:intergenic | 45.0% |
| !! | TTACCCTTTGGCTCTCTTGT+GGG | + | chr5.4:9538832-9538851 | None:intergenic | 45.0% |
| !! | AAAGTTAATATAATAATATT+TGG | - | chr5.4:9539863-9539882 | MS.gene015227:intron | 5.0% |
| !! | GAATAAAAAATAATATATTT+CGG | + | chr5.4:9537689-9537708 | None:intergenic | 5.0% |
| ACAAGTCATGTGCCGTGATC+GGG | + | chr5.4:9539700-9539719 | None:intergenic | 50.0% | |
| ACATTAGCAAGCGAGCAGTG+GGG | + | chr5.4:9537987-9538006 | None:intergenic | 50.0% | |
| AGTAGAGAGGAAGTCAGGAC+TGG | + | chr5.4:9537542-9537561 | None:intergenic | 50.0% | |
| AGTCACGCAAAGGTAGAGAC+GGG | + | chr5.4:9539350-9539369 | None:intergenic | 50.0% | |
| ATCAAGCCTCAGAAGGGAGA+CGG | - | chr5.4:9540591-9540610 | MS.gene015227:intron | 50.0% | |
| CACAAGTCATGTGCCGTGAT+CGG | + | chr5.4:9539701-9539720 | None:intergenic | 50.0% | |
| CACCTACAATGGCGCTACTT+TGG | - | chr5.4:9536693-9536712 | MS.gene015227:intron | 50.0% | |
| CAGGATTACTGCAGCATCGT+TGG | + | chr5.4:9538272-9538291 | None:intergenic | 50.0% | |
| CGGAGTTCAAATCCCGATCA+CGG | - | chr5.4:9539685-9539704 | MS.gene015227:intron | 50.0% | |
| CTGAGGAATCCCCATGTTTC+AGG | - | chr5.4:9538730-9538749 | MS.gene015227:intron | 50.0% | |
| CTTTGGCAGACATCACTCCA+TGG | - | chr5.4:9541880-9541899 | MS.gene015227:CDS | 50.0% | |
| GAGCTGCCCCGTTATTAAAG+GGG | - | chr5.4:9541903-9541922 | MS.gene015227:CDS | 50.0% | |
| GCATTCAATCCCGCGGAATA+TGG | - | chr5.4:9538806-9538825 | MS.gene015227:intron | 50.0% | |
| GGAGACCATGTTTCCGTTTG+AGG | - | chr5.4:9540422-9540441 | MS.gene015227:intron | 50.0% | |
| GGAGCTGCCCCGTTATTAAA+GGG | - | chr5.4:9541902-9541921 | MS.gene015227:CDS | 50.0% | |
| GGGTTCCAGCTCAAAATCTG+AGG | + | chr5.4:9537028-9537047 | None:intergenic | 50.0% | |
| GTAGAGAGGAAGTCAGGACT+GGG | + | chr5.4:9537541-9537560 | None:intergenic | 50.0% | |
| TGTCAGTGGGTAGACGATGA+GGG | + | chr5.4:9539478-9539497 | None:intergenic | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | - | chr5.4:9541303-9541322 | MS.gene015227:intron | 50.0% | |
| TTGTTGCATGCTGGAGAGTC+CGG | - | chr5.4:9536251-9536270 | MS.gene015227:intron | 50.0% | |
| TTTACTGGGTGGTGAGACGA+AGG | - | chr5.4:9541691-9541710 | MS.gene015227:CDS | 50.0% | |
| ! | AACGGATCGGTGAGTTTTCC+AGG | - | chr5.4:9536163-9536182 | MS.gene015227:intron | 50.0% |
| ! | AGCGCTTCTGAGGACAAAAC+GGG | - | chr5.4:9537878-9537897 | MS.gene015227:intron | 50.0% |
| ! | CAGCGCTTCTGAGGACAAAA+CGG | - | chr5.4:9537877-9537896 | MS.gene015227:intron | 50.0% |
| !! | CTTACCCTTTGGCTCTCTTG+TGG | + | chr5.4:9538833-9538852 | None:intergenic | 50.0% |
| !!! | GTTCTGTTTTGGGGGGGAAA+TGG | + | chr5.4:9538161-9538180 | None:intergenic | 50.0% |
| AACATGGTCTCCCCACCTTC+TGG | + | chr5.4:9540414-9540433 | None:intergenic | 55.0% | |
| AGAAGTCCGTCTCCCTTCTG+AGG | + | chr5.4:9540600-9540619 | None:intergenic | 55.0% | |
| ATGGCCCACAAGAGAGCCAA+AGG | - | chr5.4:9538825-9538844 | MS.gene015227:intron | 55.0% | |
| ATTAGCAAGCGAGCAGTGGG+GGG | + | chr5.4:9537985-9538004 | None:intergenic | 55.0% | |
| CATTAGCAAGCGAGCAGTGG+GGG | + | chr5.4:9537986-9538005 | None:intergenic | 55.0% | |
| CGCAAAGGTAGAGACGGGAA+AGG | + | chr5.4:9539345-9539364 | None:intergenic | 55.0% | |
| CTCTTGTGGGCCATATTCCG+CGG | + | chr5.4:9538819-9538838 | None:intergenic | 55.0% | |
| GGGAGCTGCCCCGTTATTAA+AGG | - | chr5.4:9541901-9541920 | MS.gene015227:CDS | 55.0% | |
| GTCAGTGGGTAGACGATGAG+GGG | + | chr5.4:9539477-9539496 | None:intergenic | 55.0% | |
| GTGTCAGTGGGTAGACGATG+AGG | + | chr5.4:9539479-9539498 | None:intergenic | 55.0% | |
| GTTACGCGAGGGAGAAACAG+AGG | - | chr5.4:9537141-9537160 | MS.gene015227:intron | 55.0% | |
| TCTTGTGGGCCATATTCCGC+GGG | + | chr5.4:9538818-9538837 | None:intergenic | 55.0% | |
| TGGCCCACAAGAGAGCCAAA+GGG | - | chr5.4:9538826-9538845 | MS.gene015227:intron | 55.0% | |
| TGGCGTGAGAGTGAGATTGC+TGG | - | chr5.4:9536196-9536215 | MS.gene015227:intron | 55.0% | |
| TGGGTAGACGATGAGGGGTA+AGG | + | chr5.4:9539472-9539491 | None:intergenic | 55.0% | |
| ! | GAGCACCGTTTGTTGCATGC+TGG | - | chr5.4:9536242-9536261 | MS.gene015227:intron | 55.0% |
| ! | TAATAACGGGGCAGCTCCCA+TGG | + | chr5.4:9541900-9541919 | None:intergenic | 55.0% |
| !! | TGTCGGTTCGGTTACCATGC+AGG | - | chr5.4:9540356-9540375 | MS.gene015227:intron | 55.0% |
| CGCGAGGGAGAAACAGAGGA+AGG | - | chr5.4:9537145-9537164 | MS.gene015227:intron | 60.0% | |
| !! | CGGTTCGGTTACCATGCAGG+TGG | - | chr5.4:9540359-9540378 | MS.gene015227:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 9535933 | 9541978 | 9535933 | ID=MS.gene015227 |
| chr5.4 | mRNA | 9535933 | 9541978 | 9535933 | ID=MS.gene015227.t1;Parent=MS.gene015227 |
| chr5.4 | exon | 9541847 | 9541978 | 9541847 | ID=MS.gene015227.t1.exon1;Parent=MS.gene015227.t1 |
| chr5.4 | CDS | 9541847 | 9541978 | 9541847 | ID=cds.MS.gene015227.t1;Parent=MS.gene015227.t1 |
| chr5.4 | exon | 9541607 | 9541726 | 9541607 | ID=MS.gene015227.t1.exon2;Parent=MS.gene015227.t1 |
| chr5.4 | CDS | 9541607 | 9541726 | 9541607 | ID=cds.MS.gene015227.t1;Parent=MS.gene015227.t1 |
| chr5.4 | exon | 9540723 | 9540880 | 9540723 | ID=MS.gene015227.t1.exon3;Parent=MS.gene015227.t1 |
| chr5.4 | CDS | 9540723 | 9540880 | 9540723 | ID=cds.MS.gene015227.t1;Parent=MS.gene015227.t1 |
| chr5.4 | exon | 9539947 | 9540049 | 9539947 | ID=MS.gene015227.t1.exon4;Parent=MS.gene015227.t1 |
| chr5.4 | CDS | 9539947 | 9540049 | 9539947 | ID=cds.MS.gene015227.t1;Parent=MS.gene015227.t1 |
| chr5.4 | exon | 9539064 | 9539159 | 9539064 | ID=MS.gene015227.t1.exon5;Parent=MS.gene015227.t1 |
| chr5.4 | CDS | 9539064 | 9539159 | 9539064 | ID=cds.MS.gene015227.t1;Parent=MS.gene015227.t1 |
| chr5.4 | exon | 9537468 | 9537533 | 9537468 | ID=MS.gene015227.t1.exon6;Parent=MS.gene015227.t1 |
| chr5.4 | CDS | 9537468 | 9537533 | 9537468 | ID=cds.MS.gene015227.t1;Parent=MS.gene015227.t1 |
| chr5.4 | exon | 9537255 | 9537374 | 9537255 | ID=MS.gene015227.t1.exon7;Parent=MS.gene015227.t1 |
| chr5.4 | CDS | 9537255 | 9537374 | 9537255 | ID=cds.MS.gene015227.t1;Parent=MS.gene015227.t1 |
| chr5.4 | exon | 9535933 | 9536022 | 9535933 | ID=MS.gene015227.t1.exon8;Parent=MS.gene015227.t1 |
| chr5.4 | CDS | 9535933 | 9536022 | 9535933 | ID=cds.MS.gene015227.t1;Parent=MS.gene015227.t1 |
| Gene Sequence |
| Protein sequence |
