AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015434

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015434.t1 MTR_5g012530 97.778 540 12 0 1 540 1 540 0.0 1103
MS.gene015434.t1 MTR_4g078850 47.297 74 37 1 12 85 4 75 1.14e-15 79.0
MS.gene015434.t1 MTR_2g014480 46.753 77 39 1 12 88 4 78 1.29e-15 78.6
MS.gene015434.t1 MTR_2g014470 48.649 74 36 1 12 85 4 75 1.96e-15 78.2
MS.gene015434.t1 MTR_4g015840 47.297 74 37 1 12 85 4 75 6.01e-15 76.6
MS.gene015434.t1 MTR_8g006430 45.000 80 37 1 9 88 11 83 1.82e-14 75.9
MS.gene015434.t1 MTR_2g090705 45.946 74 38 1 12 85 4 75 6.07e-14 73.6
MS.gene015434.t1 MTR_5g004570 45.977 87 38 3 12 97 6 84 1.46e-13 71.2
MS.gene015434.t1 MTR_5g065860 43.662 71 37 1 11 81 47 114 1.84e-13 68.2
MS.gene015434.t1 MTR_1g110310 48.684 76 36 1 11 86 15 87 2.41e-13 72.4
MS.gene015434.t1 MTR_7g109340 48.000 75 36 2 11 85 25 96 2.94e-13 71.6
MS.gene015434.t1 MTR_3g087030 44.595 74 37 1 12 85 82 151 4.51e-13 71.6
MS.gene015434.t1 MTR_3g108020 43.243 74 40 1 12 85 4 75 1.19e-12 69.7
MS.gene015434.t1 MTR_2g008520 37.719 114 58 3 4 116 47 148 1.52e-12 66.6
MS.gene015434.t1 MTR_2g008540 37.719 114 58 3 4 116 47 148 1.52e-12 66.6
MS.gene015434.t1 MTR_2g104030 40.741 81 44 1 12 92 70 146 6.33e-12 68.2
MS.gene015434.t1 MTR_8g022310 42.254 71 38 1 11 78 9 79 1.45e-11 64.3
MS.gene015434.t1 MTR_8g022310 42.254 71 38 1 11 78 9 79 1.53e-11 63.9
MS.gene015434.t1 MTR_8g022310 42.254 71 38 1 11 78 9 79 1.60e-11 64.7
MS.gene015434.t1 MTR_8g022310 42.857 70 37 1 12 78 10 79 1.83e-11 63.9
MS.gene015434.t1 MTR_3g437850 38.158 76 46 1 12 87 2 76 3.11e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015434.t1 AT2G35720 63.498 526 189 1 10 535 13 535 0.0 696
MS.gene015434.t1 AT3G47940 48.052 77 37 2 12 87 4 78 1.05e-16 82.0
MS.gene015434.t1 AT1G59725 45.946 74 37 2 12 84 4 75 3.01e-16 80.5
MS.gene015434.t1 AT4G28480 45.455 77 40 1 12 88 4 78 2.13e-15 77.4
MS.gene015434.t1 AT2G20560 46.753 77 39 1 12 88 4 78 2.88e-15 77.8
MS.gene015434.t1 AT1G10350 44.000 75 40 1 12 86 4 76 3.70e-15 77.4
MS.gene015434.t1 AT4G28480 45.455 77 40 1 12 88 4 78 4.44e-15 77.4
MS.gene015434.t1 AT5G01390 45.205 73 38 1 12 84 4 74 5.07e-15 75.1
MS.gene015434.t1 AT5G01390 45.205 73 38 1 12 84 4 74 6.85e-15 74.7
MS.gene015434.t1 AT5G01390 45.205 73 38 1 12 84 4 74 9.16e-15 75.1
MS.gene015434.t1 AT3G08910 45.333 75 39 1 12 86 4 76 1.04e-14 75.9
MS.gene015434.t1 AT5G25530 44.444 81 43 1 12 92 4 82 1.31e-14 75.9
MS.gene015434.t1 AT5G01390 45.205 73 38 1 12 84 4 74 1.57e-14 75.5
MS.gene015434.t1 AT2G33735 42.857 70 37 1 8 77 18 84 8.50e-14 68.6
MS.gene015434.t1 AT2G33735 42.857 70 37 1 8 77 18 84 8.50e-14 68.6
MS.gene015434.t1 AT1G80030 45.333 75 37 1 12 86 75 145 7.23e-13 71.2
MS.gene015434.t1 AT1G80030 45.333 75 37 1 12 86 75 145 7.63e-13 71.2
MS.gene015434.t1 AT1G80030 45.333 75 37 1 12 86 75 145 7.63e-13 71.2
MS.gene015434.t1 AT1G80030 45.333 75 37 1 12 86 75 145 7.63e-13 71.2
MS.gene015434.t1 AT5G16650 41.250 80 44 1 2 81 1 77 9.63e-13 65.9
MS.gene015434.t1 AT3G62600 45.333 75 38 1 11 85 25 96 1.11e-12 69.7
MS.gene015434.t1 AT3G14200 43.590 78 44 0 1 78 1 78 1.53e-12 67.8
MS.gene015434.t1 AT2G21510 50.000 74 34 2 12 85 6 76 2.34e-12 68.9
MS.gene015434.t1 AT2G21510 50.000 74 34 2 12 85 6 76 2.34e-12 68.9
MS.gene015434.t1 AT2G21510 50.000 74 34 2 12 85 6 76 2.62e-12 68.9
MS.gene015434.t1 AT2G21510 50.000 74 34 2 12 85 6 76 2.62e-12 68.9
MS.gene015434.t1 AT2G21510 50.000 74 34 2 12 85 6 76 3.50e-12 68.2
MS.gene015434.t1 AT5G16650 41.250 80 44 1 2 81 1 77 3.52e-12 65.5
MS.gene015434.t1 AT2G22360 39.506 81 45 1 12 92 86 162 3.84e-12 68.9
MS.gene015434.t1 AT4G39960 42.857 77 38 2 10 85 83 154 4.46e-12 68.6
MS.gene015434.t1 AT4G39960 42.857 77 38 2 10 85 83 154 4.46e-12 68.6
MS.gene015434.t1 AT1G68370 43.210 81 42 2 11 90 16 93 8.00e-12 67.8
MS.gene015434.t1 AT1G59980 43.210 81 43 2 4 84 15 92 1.17e-11 67.0
MS.gene015434.t1 AT1G21080 45.455 77 39 2 12 88 6 79 1.66e-11 66.6
MS.gene015434.t1 AT1G21080 45.455 77 39 2 12 88 6 79 1.68e-11 66.6
MS.gene015434.t1 AT1G59980 43.210 81 43 2 4 84 15 92 1.70e-11 66.6
MS.gene015434.t1 AT4G39150 48.649 74 35 2 12 85 6 76 6.17e-11 64.7
MS.gene015434.t1 AT4G39150 48.649 74 35 2 12 85 6 76 6.17e-11 64.7
MS.gene015434.t1 AT4G39150 48.649 74 35 2 12 85 6 76 6.17e-11 64.7
MS.gene015434.t1 AT1G72416 35.443 79 49 1 12 88 5 83 8.63e-11 61.6
MS.gene015434.t1 AT1G72416 35.443 79 49 1 12 88 5 83 8.98e-11 61.6
MS.gene015434.t1 AT1G72416 35.443 79 49 1 12 88 5 83 9.31e-11 61.6

Find 122 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAGGTTTATGATATTTA+TGG 0.168325 5.4:-6547556 MS.gene015434:CDS
GCCGGTTTACGTTCACTAAT+TGG 0.209362 5.4:-6546129 MS.gene015434:CDS
TCAATCTTCCGGGACGATTT+TGG 0.212595 5.4:-6547413 MS.gene015434:CDS
CATCTTTCATGAGAGGATTT+TGG 0.213944 5.4:+6547641 None:intergenic
TTAAACCGTATTACCTTAAA+AGG 0.228193 5.4:-6541171 MS.gene015434:CDS
GGCTGCATTGGAGGAAGATT+TGG 0.245321 5.4:-6544988 MS.gene015434:CDS
CCAGCGCACAGTACTGAATT+TGG 0.281518 5.4:+6543618 None:intergenic
GATTTCTTCGTCGGAGGATT+CGG 0.296432 5.4:+6547711 None:intergenic
GATGGTGACGGTCTCTTTAG+AGG 0.353128 5.4:-6547364 MS.gene015434:CDS
TTTATATCCTGTGGATGCCC+TGG 0.364969 5.4:+6537703 None:intergenic
TTGAAATCTGGTTTGGAACT+TGG 0.365381 5.4:-6547523 MS.gene015434:CDS
AACAACTTGTATTCGTCAAA+TGG 0.369969 5.4:-6539806 MS.gene015434:CDS
GGTATGGAAGGATTGAAATC+TGG 0.376748 5.4:-6547535 MS.gene015434:CDS
TCATAAACCTGTCTCTTATT+CGG 0.380932 5.4:+6547565 None:intergenic
TCCAATTAGTGAACGTAAAC+CGG 0.384708 5.4:+6546128 None:intergenic
GGAAGGATTGAAATCTGGTT+TGG 0.386145 5.4:-6547530 MS.gene015434:CDS
TAATGATTCTGGTCAACTTA+AGG 0.387282 5.4:-6539723 MS.gene015434:intron
TGGAGAGGTTGAAGAGAAGA+AGG 0.387919 5.4:-6547462 MS.gene015434:CDS
TACAACAAAATGTAGCTAAT+AGG 0.392977 5.4:-6539901 MS.gene015434:CDS
ATTTCTTCGTCGGAGGATTC+GGG 0.394666 5.4:+6547712 None:intergenic
GCTGCATTGGAGGAAGATTT+GGG 0.396220 5.4:-6544987 MS.gene015434:CDS
TCCGCAAAGCTTATCGTCAA+TGG 0.396259 5.4:-6547690 MS.gene015434:CDS
GTTGTATGTAGTAGGACTTC+AGG 0.398493 5.4:-6543596 MS.gene015434:intron
CCCATTGACGATAAGCTTTG+CGG 0.402719 5.4:+6547689 None:intergenic
TTATATCCTGTGGATGCCCT+GGG 0.405887 5.4:+6537704 None:intergenic
CATTTGTTGTTTCTGACAGC+TGG 0.407604 5.4:+6545912 None:intergenic
CACGAAGGTGTAAAGAAATC+AGG 0.413837 5.4:-6537939 MS.gene015434:CDS
TAATACCTTGTGTTGATTGC+CGG 0.416603 5.4:+6537851 None:intergenic
CGAAATGTTGTTGGGATTGG+CGG 0.418527 5.4:-6546249 MS.gene015434:CDS
TGTAAAGAAATCAGGAATCA+TGG 0.420936 5.4:-6537931 MS.gene015434:CDS
AGGATTCGGGTGAGAGGTTG+AGG 0.426031 5.4:+6547725 None:intergenic
TTGAACCCTATGTTTGCTAC+TGG 0.427445 5.4:-6541862 MS.gene015434:CDS
TACAACAGTTTAGTTTCTCC+TGG 0.432887 5.4:+6537891 None:intergenic
TGTCAAAACGAAATGTTGTT+GGG 0.434109 5.4:-6546257 MS.gene015434:CDS
GTTGTTATGAAAGCGCTATA+TGG 0.436734 5.4:-6539845 MS.gene015434:CDS
AAATCTCATGGCTGCATTGG+AGG 0.439365 5.4:-6544997 MS.gene015434:CDS
CGTTGAATCTTTCTAATGCA+TGG 0.443709 5.4:-6545940 MS.gene015434:CDS
TTGTCAAAACGAAATGTTGT+TGG 0.453469 5.4:-6546258 MS.gene015434:CDS
GGCGGCAATTTAGCAGTTGA+AGG 0.457018 5.4:-6546231 MS.gene015434:CDS
AAGAAGGGAACATGAGAAGA+TGG 0.457897 5.4:-6547446 MS.gene015434:CDS
CTGGTTTGGAACTTGGTTCG+AGG 0.462985 5.4:-6547516 MS.gene015434:CDS
AAACGAAATGTTGTTGGGAT+TGG 0.467280 5.4:-6546252 MS.gene015434:CDS
AGATTAAAGCTGAGTTGGAG+AGG 0.468421 5.4:-6547477 MS.gene015434:CDS
GGTTTATGATATTTATGGTA+TGG 0.473781 5.4:-6547551 MS.gene015434:CDS
AAGAAACAAGCAATTAGAAA+CGG 0.479082 5.4:-6539876 MS.gene015434:CDS
TCTAAATCTCATGGCTGCAT+TGG 0.480181 5.4:-6545000 MS.gene015434:CDS
AGAAACAAGCAATTAGAAAC+GGG 0.485283 5.4:-6539875 MS.gene015434:CDS
TGAAGAGATTAAAGCTGAGT+TGG 0.485855 5.4:-6547482 MS.gene015434:CDS
TTCAGATCCGAATAAGAGAC+AGG 0.488853 5.4:-6547572 MS.gene015434:CDS
CCGCAAAGCTTATCGTCAAT+GGG 0.491774 5.4:-6547689 MS.gene015434:CDS
TAATATTTCTTTATATCCTG+TGG 0.491894 5.4:+6537694 None:intergenic
TATGATATTTATGGTATGGA+AGG 0.492093 5.4:-6547547 MS.gene015434:CDS
TTTCAGATACAACTCATGTT+GGG 0.497567 5.4:-6545377 MS.gene015434:intron
TGTTGTTTCTGACAGCTGGC+GGG 0.500265 5.4:+6545916 None:intergenic
TCTTCCATTGAGATGGAAGT+TGG 0.502607 5.4:-6543658 MS.gene015434:CDS
AGCTTTGCGGATTTCTTCGT+CGG 0.502755 5.4:+6547702 None:intergenic
GGAAGAAAGAAGACGAGAAA+AGG 0.504085 5.4:-6545328 MS.gene015434:CDS
TTAACAATGTCTTTGAGAGA+TGG 0.505493 5.4:-6545965 MS.gene015434:CDS
TCTGTGCCGCAGTATTTAGA+TGG 0.507210 5.4:-6547382 MS.gene015434:CDS
GCAATTAGAAACGGGTGGAC+TGG 0.509279 5.4:-6539867 MS.gene015434:CDS
ACCACCAACTTCCATCTCAA+TGG 0.513249 5.4:+6543654 None:intergenic
AGAACAAAGTAAAACGATGC+TGG 0.514699 5.4:+6541826 None:intergenic
TTTGGAACTTGGTTCGAGGT+TGG 0.521456 5.4:-6547512 MS.gene015434:CDS
GGAGAGGTTGAAGAGAAGAA+GGG 0.521692 5.4:-6547461 MS.gene015434:CDS
TGGAGATTTGAATTCTGTCG+TGG 0.521929 5.4:-6542676 MS.gene015434:CDS
ATTTCAGATACAACTCATGT+TGG 0.526912 5.4:-6545378 MS.gene015434:intron
CAACTCCTTTAGCTCGGCAC+AGG 0.529594 5.4:-6545063 MS.gene015434:intron
GGAGATTTGAATTCTGTCGT+GGG 0.529795 5.4:-6542675 MS.gene015434:CDS
GTAAAGAAATCAGGAATCAT+GGG 0.535679 5.4:-6537930 MS.gene015434:CDS
ACGACAGAATTCAAATCTCC+AGG 0.537158 5.4:+6542678 None:intergenic
TCCATTGAGATGGAAGTTGG+TGG 0.539674 5.4:-6543655 MS.gene015434:CDS
ATAGAATTTATTGCTTCAGC+CGG 0.541957 5.4:-6546147 MS.gene015434:CDS
TTGTTGTTTCTGACAGCTGG+CGG 0.544720 5.4:+6545915 None:intergenic
CCAAATTCAGTACTGTGCGC+TGG 0.546174 5.4:-6543618 MS.gene015434:CDS
ATTAAGTCATCAACTTTCTG+AGG 0.548247 5.4:-6546178 MS.gene015434:CDS
TCACAACCATCTGTAGCTGT+AGG 0.549045 5.4:-6545353 MS.gene015434:CDS
CAGCTGTCAGAAACAACAAA+TGG 0.555163 5.4:-6545911 MS.gene015434:CDS
GTTGAAGGACATCAAGGTGG+TGG 0.555707 5.4:-6546216 MS.gene015434:CDS
GACTGCCACTGCAGATGTGA+AGG 0.563742 5.4:-6545306 MS.gene015434:intron
TCACACTCATCTGCAACAGC+AGG 0.565108 5.4:-6545989 MS.gene015434:CDS
GCAGAAGGCTCTAGAGAAGG+AGG 0.565595 5.4:-6541143 MS.gene015434:CDS
TTAGCAGTTGAAGGACATCA+AGG 0.567675 5.4:-6546222 MS.gene015434:CDS
TTGTGCAGGTTCAAGAAGCA+AGG 0.572071 5.4:-6539949 MS.gene015434:intron
AGTTTAGTTTCTCCTGGACA+AGG 0.572083 5.4:+6537897 None:intergenic
CACAACCATCTGTAGCTGTA+GGG 0.573415 5.4:-6545352 MS.gene015434:CDS
TTCCACCCTACAGCTACAGA+TGG 0.578527 5.4:+6545347 None:intergenic
ATGGTGACGGTCTCTTTAGA+GGG 0.579960 5.4:-6547363 MS.gene015434:intron
AGATGGAAGTTGGTGGTGGA+AGG 0.580738 5.4:-6543648 MS.gene015434:CDS
ATTGAGATGGAAGTTGGTGG+TGG 0.583627 5.4:-6543652 MS.gene015434:CDS
TTTGCGGATTTCTTCGTCGG+AGG 0.586012 5.4:+6547705 None:intergenic
GTGCGCTGGTTGTATGTAGT+AGG 0.589823 5.4:-6543604 MS.gene015434:CDS
CGTCGGAGGATTCGGGTGAG+AGG 0.591705 5.4:+6547719 None:intergenic
GAGATTTGAATTCTGTCGTG+GGG 0.593603 5.4:-6542674 MS.gene015434:CDS
TATGTAGAGTACGCTCATGC+CGG 0.594747 5.4:-6537870 MS.gene015434:CDS
AACGCTCCAGTAGCAAACAT+AGG 0.595428 5.4:+6541856 None:intergenic
CCGCAGTATTTAGATGGTGA+CGG 0.596124 5.4:-6547376 MS.gene015434:CDS
ACGCTCCAGTAGCAAACATA+GGG 0.598281 5.4:+6541857 None:intergenic
GTGGCAGCATCTTTCATGAG+AGG 0.598579 5.4:+6547634 None:intergenic
TGATACCCCAGGGCATCCAC+AGG 0.599069 5.4:-6537710 MS.gene015434:CDS
CAAATTAGCCAAAATCGTCC+CGG 0.603920 5.4:+6547405 None:intergenic
AACCATCTGTAGCTGTAGGG+TGG 0.613280 5.4:-6545349 MS.gene015434:CDS
TAAGCAGAAGGCTCTAGAGA+AGG 0.614702 5.4:-6541146 MS.gene015434:CDS
CCTTAAAAGGAATAAGCAGA+AGG 0.619877 5.4:-6541158 MS.gene015434:CDS
TGAACAATTAGTGATACCCC+AGG 0.624180 5.4:-6537721 MS.gene015434:CDS
TGTGCAGGTTCAAGAAGCAA+GGG 0.640879 5.4:-6539948 MS.gene015434:intron
TACCGAGCTGATGTCTCGAA+AGG 0.642389 5.4:+6545039 None:intergenic
TAATTGGAGTGCAGACATCA+CGG 0.643892 5.4:-6546113 MS.gene015434:intron
AACAAGCAATTAGAAACGGG+TGG 0.644799 5.4:-6539872 MS.gene015434:CDS
AAGTACCTTCACATCTGCAG+TGG 0.655070 5.4:+6545301 None:intergenic
CAGAAGGCTCTAGAGAAGGA+GGG 0.666625 5.4:-6541142 MS.gene015434:CDS
TCATGCCGGCAATCAACACA+AGG 0.679169 5.4:-6537856 MS.gene015434:intron
TATATCCTGTGGATGCCCTG+GGG 0.680955 5.4:+6537705 None:intergenic
GTCCTTTCGAGACATCAGCT+CGG 0.682396 5.4:-6545041 MS.gene015434:CDS
AAGGGAACATGAGAAGATGG+TGG 0.692220 5.4:-6547443 MS.gene015434:CDS
AGATTTGAATTCTGTCGTGG+GGG 0.694309 5.4:-6542673 MS.gene015434:CDS
TCATTAACTAGAAAATTCAG+AGG 0.697331 5.4:+6539740 None:intergenic
GAACAATTAGTGATACCCCA+GGG 0.697876 5.4:-6537720 MS.gene015434:CDS
GCAGTTGAAGGACATCAAGG+TGG 0.714956 5.4:-6546219 MS.gene015434:CDS
TTGTTGATGCAGCTTCACGA+AGG 0.717990 5.4:-6537954 MS.gene015434:intron
AACTCGTTGAAAATTCTCAG+TGG 0.720687 5.4:+6547615 None:intergenic
GCATTGGAGGAAGATTTGGG+AGG 0.723138 5.4:-6544984 MS.gene015434:intron
CCGTCACCATCTAAATACTG+CGG 0.736185 5.4:+6547376 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr5.4 gene 6537704 6547794 6537704 ID=MS.gene015434
chr5.4 mRNA 6537704 6547794 6537704 ID=MS.gene015434.t1;Parent=MS.gene015434
chr5.4 exon 6547364 6547794 6547364 ID=MS.gene015434.t1.exon1;Parent=MS.gene015434.t1
chr5.4 CDS 6547364 6547794 6547364 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6546114 6546311 6546114 ID=MS.gene015434.t1.exon2;Parent=MS.gene015434.t1
chr5.4 CDS 6546114 6546311 6546114 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6545907 6546021 6545907 ID=MS.gene015434.t1.exon3;Parent=MS.gene015434.t1
chr5.4 CDS 6545907 6546021 6545907 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6545307 6545393 6545307 ID=MS.gene015434.t1.exon4;Parent=MS.gene015434.t1
chr5.4 CDS 6545307 6545393 6545307 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6544985 6545073 6544985 ID=MS.gene015434.t1.exon5;Parent=MS.gene015434.t1
chr5.4 CDS 6544985 6545073 6544985 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6543597 6543681 6543597 ID=MS.gene015434.t1.exon6;Parent=MS.gene015434.t1
chr5.4 CDS 6543597 6543681 6543597 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6542654 6542707 6542654 ID=MS.gene015434.t1.exon7;Parent=MS.gene015434.t1
chr5.4 CDS 6542654 6542707 6542654 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6541822 6541902 6541822 ID=MS.gene015434.t1.exon8;Parent=MS.gene015434.t1
chr5.4 CDS 6541822 6541902 6541822 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6541126 6541203 6541126 ID=MS.gene015434.t1.exon9;Parent=MS.gene015434.t1
chr5.4 CDS 6541126 6541203 6541126 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6539724 6539963 6539724 ID=MS.gene015434.t1.exon10;Parent=MS.gene015434.t1
chr5.4 CDS 6539724 6539963 6539724 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6537857 6537964 6537857 ID=MS.gene015434.t1.exon11;Parent=MS.gene015434.t1
chr5.4 CDS 6537857 6537964 6537857 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
chr5.4 exon 6537704 6537760 6537704 ID=MS.gene015434.t1.exon12;Parent=MS.gene015434.t1
chr5.4 CDS 6537704 6537760 6537704 ID=cds.MS.gene015434.t1;Parent=MS.gene015434.t1
Gene Sequence

>MS.gene015434

ATGATGGAACAAAACTCTGAACAAGACAATCGTGAACTCTACGCAATCCTCAACCTCTCACCCGAATCCTCCGACGAAGAAATCCGCAAAGCTTATCGTCAATGGGCACAAGCATATCATCCAGACAAGTACCAAAATCCTCTCATGAAAGATGCTGCCACTGAGAATTTTCAACGAGTTTGTGAAGCTTATGAGATTCTTTCAGATCCGAATAAGAGACAGGTTTATGATATTTATGGTATGGAAGGATTGAAATCTGGTTTGGAACTTGGTTCGAGGTTGGACAGAGCTGAAGAGATTAAAGCTGAGTTGGAGAGGTTGAAGAGAAGAAGGGAACATGAGAAGATGGTGGCAAGTTTTCAATCTTCCGGGACGATTTTGGCTAATTTGTCTGTGCCGCAGTATTTAGATGGTGACGGTCTCTTTAGAGGGTATGGTATTTCTCTTTAATTTCTGAAATGTGTGCGTATTGTTTGAATACAACCGATAGTTGATAAGCGAACTGATCGTGGATGAGTTTAAGCGAATAGTTGATAAGCTAGCTTGTAGTTGGCAGCGGATAAGCTAGTGTATTGAAATGGCAGTGTTTGGTAAAATTAGTTGTTGAATTAGCTGATAACTTTATTGTTTTTAAGTTTTGAAGTGTGTGTGTAAATATTGCTAAAAATGCATACCTTTTTGTTAGAATGGTTTTAAGTTTTGTTTGTTAAAAATAACTGATAACTGATAAGCTAGTTGATAGTGAATGAGCTTATAGCGGATAGCAGACAAGCTAGCTTGTAGTTGATAGTGGATAAGTTAGCGACAAAAGAAGACCTATAAAAATTATTAAGAGAAACTACTAAGAAAGGACTAGAGATTAATGAGTTGTAGATTAGACGGATAGTAATCAAATCACTAGAGGCAAAAGAAGACCTAGAAAAACTATAAGATAAACTATTAAGAAAAGTCCAGGGATTAATGAACTGGATATGGATATGATAGAACATTGCGGCATCGTTTGAATCATGTAGCCGACCCCACTTAATGGGATAAAGCTTGATTATTGTTGTTGTTGTGTGTGTACTGCTAAAAATGCATACCTTGTTGCAATAGTTTATCGATATTGGAACTCGAGTGTTAATGTACGCAATGATGGACAAAAACTGAAATCTCCTGGATGATATTATGCCCTGTGTTCTTGATTGAATTTTTATAGAAATATGTTCGTGGTCCAAGAGGTGTCAGTTTAATGGTAGCTGGACTTTGTAATCTCAAGGGACAGAGTTCGAATCCCACCTAAGACAATTTAAAATGGTCATTAATGCCACTTTTATAAATAAAAAGTTTCCCCTTCCTCAATTATTTAAAAAAATAAAAAAATAATGTTCCTGACAGTTAAATAATTGCTTCTTGTTGCGATGCATGTGTTGAGTTGAGATACCCATCCTTAGGATTTTATTTGAATGTTGATGTTTTTGTGTGTGATGTTTCTGAGCATCAGAATGGCAATGACGAGTGAAGTTCAGTCTCAATTGTCAAAACGAAATGTTGTTGGGATTGGCGGCAATTTAGCAGTTGAAGGACATCAAGGTGGTGGAGCTGCTAATGCTGTATTAAGTCATCAACTTTCTGAGGCTTCGTCAATAGAATTTATTGCTTCAGCCGGTTTACGTTCACTAATTGGAGTGCAGACATCACGGTTGGTTATTTGCTTTCTGCAAATCTATTTGAACAGTGTTCTTTTGTCAGTCCTAGTGATGATTTATGTGTTTCTCGTGCATCATGCCCCAGCGTTATATCATCACACTCATCTGCAACAGCAGGCTTAACAATGTCTTTGAGAGATGGTTCGTTGAATCTTTCTAATGCATGGACCCGCCAGCTGTCAGAAACAACAAATGGACATGTATGCTCTTCTATGCCTTGGACTTTTCTTTCTCATCTATGTTGTCATAACAAGATGAAAAATTGTACATAACTTTGTGCGGATATGCATATATCAGCTTAAAATAAGATCGATTTAATGATAACTATGGAAATGATTAATTTTACTGTGAGATTTGTTGATATCAAAATAATGTCCACTGCATCTGGCTTTCAACCAGAAAACCAGGATTACTTTGTATAAGCAACATACTAAATTCAAGGGAACAAAGGAATGATCTGTCTGCATGGTTTAGAATTTCTAAATGTGGGGGCATATTTTCCGACCTTGTAATAGATGAGTGTCAACAAAGTTTGTATGTTTGGTACTTTATCTAGCCAAGTTCCTTAAAATATAATTTGCGCCAGAATTGGCTCATATAAGTGTTGGCCAATTCAAAGCATTGGTGAGTTTGGCTTTTTGTTGCCTCAGGGATTATGAAACAGATTTGGAATATTCTCTATCTGTGATATGTTCTTCTCACGTGTATTTCAGATACAACTCATGTTGGGATCACAACCATCTGTAGCTGTAGGGTGGAAGAAAGAAGACGAGAAAAGGACTGCCACTGCAGATGTGAAGGTACTTCTTTATTTTCTGCAAAATCAGTCATTTGTACCGGACATTTTACGACCATATATTGATTAAAAGTTGTACAGTATGATCCACCATTCTACTCTGAAAAGGGGAGAGAAAAAAGTGACAGATCATGTGCTTCCATCTTTAGAATAATGGTCTTAGATGTTGCTAATCTGTATAGAAAAATTTATGCCTTTTATCTTTTCCTATACTAAATTCTTTCTCAACTCCTTTAGCTCGGCACAGGTCCTTTCGAGACATCAGCTCGGTATACTCATCGATTTTCTTCTAAATCTCATGGCTGCATTGGAGGAAGATTTGGGAGGTATGCAAATCTGATTAGCTGAAAATTTAGTATACCATACCGTCGTACTTAGATTTTGGTGACTAAATGCTTGCAATGTCACTGTATTGTTGGCAAAGGTCTATTGTGGATACTTGATAACATAAATATTTTGTTTGTTGAATATTGACTCGAAATCCAACTAATTTTACTCTGTTTCCATTGTTCATACCTTCTTTTTTATCTTAATGGTATATTTATAAAAAATAAATTATTGCTGTAGATTTTTTTAAAGGTCAATAGGGTTAGTTGATCCATCTAGTCAACACCTCCTTTTGAAAATCGATTAGGAATGGTTGCATATTACAATTGCCCTTGACATTGAATAATAAGAGGTTCCTTAGCCACTGACATTCCATACACCATCGTTTCTTTTGTTTTTATGCTGGGGTCTATTTTCTTGTTGGGAAAACTGCAAATATATAAAAGATGGCATCTAAATTTCCCTCTTTATGGGAATCAAAATGAAAGGATGAATTTTTTCTTCTCTTGATTAGAATTAAATTGAAAGGGAAAGGCCAGGATAAAGTGTGGAGCTGCTGCATTCGGATTCTTAAAGCAGTGGTTTCATTGAACATTTTTCTATTGAGGAATCTCATTCAGCATATATAAGAGATGGTGTCATGGTAACTGCTTTTCTGCAGATGGTAGTGTTGGAGAGTCAAAAGAATTAATTAATGAAATTTGAAGATATTGATAAAGGTATTAGGAAACATGTCTGTTGTCTAGGTTGAAGTAAAATAGAGCATATGGAACAAAAATTTATCAAGAGAGAAATTTCAGTGTAGAGGTGAAACTTGGAGAGTATACAACTCCACAAGGCGTTTTAAAATGTTACAAAGATGACGACGTTGCAATGATAAGTGATTACACAATAAAAAGTAAGATTGTGAATTGAGGTAGCTACAGTTGTAAAAAAGATGATACAGTCTCATCTTAGGTGGTTTGACATGCGTGGAGACGACCCAGGGAAGCACTACTTAGGAGAGTTGACAAGATTAAACATGAAATTTAGACTGGACAGGCCAATAGTTAGAATTTAGAAATGTAGGAGACCAAGAAAATTTATATCCCAAACCTTAAAGAGAGATCCAGAGATAAATGATATATCTTTTAAATTAAACAAGAGTTGGGAAAACTGCACTATCTTTTAAATTAAATACTTGATAGCCTGTAGGTGGTTATGCTAATAGATAAATGCTAATTTTACTCATTGACATTAAATTTTTGGATTTGTATGCAATTTGATTTTGAGTTTTTGACATTAAACCATTTGAACTTTTAGCTCTTCCATTGAGATGGAAGTTGGTGGTGGAAGGAAGTTATCCAAATTCAGTACTGTGCGCTGGTTGTATGTAGTAGGACTTCAGGTAATGCATTTAATGATTTCTTTTACAATTAACCATGTTTATCGTTCTTGTCTTTGTTTCCGTGATTAATTATAGCGGTTTAGGCTTAGGGTGAAAATCTTGTATTAACTGTTACTATTTAAACTAAAAACAAGAGAAGTGCTAGCAACACACTCTCTAACATACACTTTCTAACACACTCTCTATCATACACTTTCTAACACACTCTTTAAAAGGGCAGCCGGGTGCACTAATGCTCCCGCATACGCAGGGTCCAGGAAGGGGTCCCACCAATTGGTGTGTTGTAGGCAGCCTTACCCTGTTTTTTACACATGGGGCTGTTTCTAGGTACCTTTGAGTCACGTGACAACAACTTTACCGTTGCGCCAAGGCTCCCCCTTTTCTAACACACTCTTTGATTGGTTAAAATTCACATTGTTTCCACTGAATCATGTTGGACCCGTATAAATATTGTGGGACCTACACTAGCCTTTTCACTCCCCTTTTCCTCACCATACTAAAGAGACTGGCATGATTTCTGGGGCTCTACTTGTTAAAATACCCTGCTAAAATACTATGCAGTTTGTTTAGTTCTAGATCCAATCATCAAAAAGTTTATCTGGGATGTGGTACTTTAATGGTCCAAAAAATAACTTTTGCTCTTAAAGTACCCCATCCAAATTTTGAATTAAGCCATATTATATTTTTAATTTGTCACATTGATGGTTCCTTGTTTCCAGTTTCCACCTATGGAAATTTAAAGATTCCATTTCATGATCCTCCCTTCCCAACACTTTAGGGTTCCTCCCTTCCCCACACGTTAGGGTTCAATGCAAGATGTTTTTTTTTCTTCTCCCTTTGTTAATGATTTCTTGTATAAACTATCATACCATTTATTTAACCTTTTCAGGGTATTTCCTGGAGATTTGAATTCTGTCGTGGGGGTCAGAAGTTGATTATTCCTGTAAGAAGAGTCTTCTTTACATGTTTAACCTGATAGATGCTAGACACCATTTTGGGATTTGACTTTTATTCAGATGTTTTATATATGATGGTTTGTGTGTAATTTCTTTCTGATTGTTAAGATAAATCCCACCATTAGATCAAATGAGATATGATATGACTTGTTGATCCCATGGTGGAAAGAACACTTGTGCATGGTGCAAGCCATTTTACTTGTGTATGTGAGACAAGCCTAACAATTTTATTTTAGATAGGTTTTTCTTTTAATCGACTTTGGTAATTTGTCCAAAATTAAAGAAATAATTGCATTACAAGTTTGATTATATTAAAATGGACGTAAGATTTTATTAAGGGATGGAAGTGTAGATTTTAACTTAAAAGGGGAGGGGGATGTAATTCAAACTTCTCTCAGGGGAGTGAACTCTAATTTTCTTTAGTATGTTTTACATAAGAAGGAAGAGGGTGTATATTTTAACAAAAGAGGGGAGGGTAGTGTAATTTAAGCAACTCTTAGGGTAGAGGAGTGTAATTTACTCTTACTATTATTACTAATATTGATTTTGACTATCCTACCCTGTTTAGCTTCCTTTGTGAACTTCGGTACTGTAATTACCTTGAAACCTAATGTAATTGCTGAAAAATAATTTAGAAAATGTGTACATTTTTATAATCTTCATATAGTGCAGCAATTTAAATTTGCTTGTTTGACTTATATTGTTTCTTACTTGTTATATATGTATTATTACTTGCAGATTTTGCTGACGAATCATTTGAACCCTATGTTTGCTACTGGAGCGTTAGTTATTCCAGCATCGTTTTACTTTGTTCTGAAGGTGAATTCATATTATCTTTACGTTTATAACCTACTTGTTGAACCGTTTAAGTATTGTCAGTGCTATCTGGTAGTTTATTTCGTGAAGACCTATAAATATTTTTTATTCATGTTATTGTTAGTATTTTCCGTAAGTCATCATTATTCAGCAGGGTGAATTTTGGTTATTTAGAGTTTACTTTTCAATACAAATTAATTAAAAACTATATGGTTGCTTGCAATTGTCTCCATTGGAACAAAATAACACGCACAACTTACATCATCGAAGAATATAGCTTGCTCCATACCTGTTAATAAATTTCCCTTTCTAAATTTTGAGTGTACCTTTTCTAGTTCACAAGGTTGTCAGCTATTTTCGCTGCTACATTTATATTGATTCTTATTGTCTTTTGTTTTACCATTAGTTACAGAAATCTTGATCACCACTTTTTATCACAAAATATCTCTGGTGCAGAAATACCATACGAAGAATCAAGATAACTACTATTTTTTAGCTAATATGACATATGCACTCGTTTGATTTATTGAACAGCTTGGTGACATGTCCCTAATATTTAGCTAATTTAGATAACTTGTTTTGCTCAGAGATGCGCTTCTAATATTTGAGTTGTGTTTGCAGAAATTTGTCATTAAACCGTATTACCTTAAAAGGAATAAGCAGAAGGCTCTAGAGAAGGAGGGAAAAACTTCTACTCAGGTATGGGTGATTTTTATGGTATTAACTGAGTAGTGGTGTTAGGATGCAATACTTGTGTGTTGTTGTTTCTGGTGTGTAACTTGTACTCTTCTCATGTAAGATGGTCTATATTTTCTGGCTGTGTGATAACTACGTTAATAATTTGGGATTTACTAGTCAATGCATGATACAGGCACACCTTCCTATAATGAATGAAAAAAAATACTGTATCAGGAATTAGATTAACAGAATATATAACAACTTACAAAATGAAGCAAATAAATATTTAAGATTTGAAAAACCAATATTTAATAAATAATGAAAAAGGAACGGACATTTTATTTTATAATTGGGAAAAAATGCCGCAGAAAAAAGAGGAAGAAAGAAATATATAAACAAATGGAAAAAAGATTAACACTTCCTAAATGGTGGTGGTTGTCGGAGGTGAAGAGAGAAGAGAGTTGAGATGCAATGAATGAGAAGAGAGAAGTTGAGATGTAAATATTAGTTTTTTTGAAGAAATTCGAGATGTAAATTTTAACATAAACAGCCTATGTTTTTTAGGGTTTTTAACCCATTTGGGTTTCTAGTAAAAAAGAAACATGTTGGCCTGGGTTTGGGTCAGGTCTCAAGGCCCAATCTCAGTTTTCTCTGTTTTTTTTTAGTTTTTTTCCGCTATGGCCATCCAACTTCATTGTGTCTGCCATGTGAAAACCAATATGCTACTGCCATAGTTGGACAGTAAGATTTTTTCCTGCGAGTCACAAGTTCAATGCCTATTTGGATGGTGAATCTTTATAAATTTTCAATTGTACAGCCAGTGGCCTTTAGTTCCCCTTTCATTTCATATCTAGGTATCTAGCACTAGCCCAAAATACAGAGGGAGCTAGAATATGATTACTCCAAATGCCTCCTTTTAGTTCTTGGCTGTGATATCAAATAGTCAAATACAAATTCAGTTTGAGTCCTAATCATGAGGCTTACAAATGAGTTTTTCTCCGTTTGAGTCCTAATCATGAGGCTTACAAGTTTTCTCATTTATTTCCTGTCTGCATAAATGTGTGCATTTTGTTCCACTTTTTAGAAGTTACATGTCTTCCATAGAAGACATATCAGATCTGTTTTTGGTGAATAATATTGAGTTAACTTAACACCCCCTTCCTCTGCTTCCCCGGTTGTGCAGGTTCAAGAAGCAAGGGCAGCAGCAGAAAAAGCTCAGAAATTACAACAAAATGTAGCTAATAGGAAAAGAAACAAGCAATTAGAAACGGGTGGACTGGTTGTTATGAAAGCGCTATATGGAAGTGATACAGTTTTGAACAACTTGTATTCGTCAAATGGAACAAGTTTTGAATCTACTTCAGGAGTCATTGATGTTACAACACCTCTGAATTTTCTAGTTAATGATTCTGGTCAACTTAAGGTATGGTTCCTTGCTTTCTCTCAAAAAGTTATTCTTGACGTATGTTAATCACGAAGTTTGATTATTTACAACAATTAATTGTTCTGCTTGCTTATCAACATGAATAAAGATAATGCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGGTCTTGCTACAAGCCACCCTTTGGTGGTGTCTTTTAGCAAGTCACACCTCAAGGTGTGATTTTCACTTTTTAGTTATAACTTTGCTAAAAGCCACCTTCATAAAAGTAAGTTGGTGTCTTTTCGCAAATGCTCATAGAGTAACTTGCTAAAAGACACCTTCACAAAAGGTGTCTTCTAGCAAAACCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAGTCAGGATCCGTTGACACCAGGTGTAAGTCTTTAGACTTACACCAAATCTCAACCGTTAAAACTAATAAATCATACGGTCATTATAAAAATTGGATATTGGAACACGGCTAGCTCTTTCCCCTTCCTCATCGTAGTTTTTTCTCCAACAATGAAACTTGTGATTCCGTTTACTGTGGTTTGAGATCCATTCTGTCATCAACAATCTCACTTCTGCCATCACTTATGAATATTCATTGGTTCAAGACCTAAATGTTCTTAGTCATCGATAAACCTCCTAATGTGACAACAAATTTTTCTATGGACGAAAAATAATGAGATTCAATCAATTTAATGAATCCAAAGTAATTAAAAAAAAATCAATTTATCTTTTTATCCCCTTTTAGCGTTTCTTTTCATGATCGTAGAAAATTGTATGGGTATTGTACTATATATGATTATTACTGTATCAATTGAAGTTTTCTATTTTATACACATATTGCAATTATGATTGTTTTGAGAATTCAATAGTTTCAATTGCAATTAAATCCTTTGATTTCTGATCTGTCCACACACAACCCTTGGTTGTTGTTTGTTCTGGCAAAACTAACTGAAGGTTGCAGTTTGTGTAATGCTCTAACAATATCTCCTGTGATGTGTTCCTTATGTGGATATATTTTAAACCACACGATCGATTAAATTTAACGGTTGAGATTTGGTGTAAGTCTTTACACCTGGTGTCAACGGATCCTGACTCTCTCTCTCTCTCTCTCTATCTATCTATCTATATATATATATATATATATATATATATATATATATATATATATATAGGATATAGGATGGAATGGAATAATGTGCTGCAAACTCCTTTAATTAGGCATGATGGGTTAAAATTGAAATTTTGAGATGGAGACAGTAACTGAAAGTTAAGTATAGGGTTATACTTTTCTGTTTAATTTCTTGGACTGACATTAAATTTCTGGACCTTAAGTTTTACGTCAAAGAGATTTATGTTCTAAAGATGTGGTGAAGTTGTGTTTTCATTTTTCAATACATGTATTTGTTGACCAATTCATTAAACTCAACTCTGAAGTCTTAGACAATTTATCAACAGTGTAACCTTCCTTTATCGCGAAGATGCAAAAACCTACTTGAAAGGTCTTTCAACCACTTGTATATTTTTCATAACAAAAGCTAGTAAGCTACTACTTGTGTGAATTAAAGGCTGAATTTTGAGCAATTAATCCAGTAAAATCCTATTTAATGATATTTCTGAGGCCATATTGTAACTTCACCAAAATTAAGTTTTGGGAGCACACCTGAAATAATGGAAGTTCTGTTTGTTGATGCAGCTTCACGAAGGTGTAAAGAAATCAGGAATCATGGGATTTTGTGATCCTTGTCCAGGAGAAACTAAACTGTTGTATGTAGAGTACGCTCATGCCGGCAATCAACACAAGGTATTATCAGTTGCTCTTTTTACTGTTTAAGAAGTTTGGAGTATAAACCTTTTGCATCTGGTTGGTTGTATGGGCTAATTAAATTCTTTTAAACAGGTATTGGTTGGTGACTATGAACAATTAGTGATACCCCAGGGCATCCACAGGATATAA
Protein sequence

>MS.gene015434.t1

MMEQNSEQDNRELYAILNLSPESSDEEIRKAYRQWAQAYHPDKYQNPLMKDAATENFQRVCEAYEILSDPNKRQVYDIYGMEGLKSGLELGSRLDRAEEIKAELERLKRRREHEKMVASFQSSGTILANLSVPQYLDGDGLFRGMAMTSEVQSQLSKRNVVGIGGNLAVEGHQGGGAANAVLSHQLSEASSIEFIASAGLRSLIGVQTSRVISSHSSATAGLTMSLRDGSLNLSNAWTRQLSETTNGHIQLMLGSQPSVAVGWKKEDEKRTATADVKLGTGPFETSARYTHRFSSKSHGCIGGRFGSSSIEMEVGGGRKLSKFSTVRWLYVVGLQGISWRFEFCRGGQKLIIPILLTNHLNPMFATGALVIPASFYFVLKKFVIKPYYLKRNKQKALEKEGKTSTQVQEARAAAEKAQKLQQNVANRKRNKQLETGGLVVMKALYGSDTVLNNLYSSNGTSFESTSGVIDVTTPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGETKLLYVEYAHAGNQHKVLVGDYEQLVIPQGIHRI