AlfalfaGEDB | MS.gene015640

M. sativa cultivar XinJiangDaYe / MS.gene015640

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF13041.9 PF14432.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015640.t1	XP_003630975.1	93.7	701	44	0	1	701	1	701	0.00E+00	1327.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015640.t1	Q9LW63	58.5	715	271	6	10	701	4	715	2.8e-235	816.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015640.t1	G7LBG4	93.7	701	44	0	1	701	1	701	0.0e+00	1327.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000659	MS.gene015640	PPI
MS.gene000667	MS.gene015640	PPI
MS.gene015640	MS.gene93423	PPI
MS.gene015640	MS.gene056886	PPI
MS.gene015640	MS.gene81754	PPI
MS.gene015640	MS.gene023776	PPI
MS.gene015640	MS.gene78889	PPI
MS.gene015640	MS.gene71564	PPI
MS.gene015640	MS.gene93812	PPI
MS.gene015640	MS.gene000654	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015640.t1	MTR_8g105720	96.148	701	27	0	1	701	1	701	0.0	1397
MS.gene015640.t1	MTR_7g076350	39.443	682	360	5	55	701	24	687	8.26e-174	516
MS.gene015640.t1	MTR_7g083820	40.246	651	356	5	65	701	41	672	4.90e-172	508
MS.gene015640.t1	MTR_8g107740	38.574	687	398	6	22	701	116	785	2.04e-168	503
MS.gene015640.t1	MTR_8g107740	30.068	439	271	8	64	490	62	476	2.88e-58	211
MS.gene015640.t1	MTR_8g107740	23.630	292	216	4	276	563	55	343	2.73e-19	93.2
MS.gene015640.t1	MTR_4g113830	38.943	719	408	10	6	701	28	738	9.64e-165	491
MS.gene015640.t1	MTR_8g065730	36.828	725	405	8	27	701	27	748	1.62e-164	491
MS.gene015640.t1	MTR_8g065730	23.492	315	208	10	6	312	275	564	1.78e-17	87.4
MS.gene015640.t1	MTR_5g095690	38.818	626	366	4	76	701	203	811	3.90e-161	485

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015640.t1	AT3G23330	59.716	705	260	5	18	701	14	715	0.0	842
MS.gene015640.t1	AT3G23330	63.964	555	183	3	162	701	54	606	0.0	728
MS.gene015640.t1	AT3G23330	26.977	215	135	6	23	234	147	342	2.52e-16	83.2
MS.gene015640.t1	AT3G12770	39.028	679	390	8	27	701	36	694	5.73e-172	509
MS.gene015640.t1	AT1G20230	36.289	733	404	10	27	701	33	760	1.52e-171	510
MS.gene015640.t1	AT3G26782	40.573	663	356	7	58	701	16	659	1.76e-171	506
MS.gene015640.t1	AT1G08070	37.698	695	404	8	31	701	52	741	2.75e-162	485
MS.gene015640.t1	AT1G08070	40.065	619	351	5	101	701	21	637	7.27e-162	481
MS.gene015640.t1	AT1G08070	27.644	416	260	11	21	421	72	461	1.30e-33	137
MS.gene015640.t1	AT3G57430	36.761	710	419	8	5	701	198	890	9.40e-162	489

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Find 167 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTGGTAACATTAACA+TGG	0.676991	4.1:-1490084	MS.gene015640:CDS
AAACAAGGAAACAACATCAA+GGG	0.631990	4.1:+1489977	None:intergenic
AAAGAATATTCGAGTGTGCA+CGG	0.572790	4.1:-1489241	MS.gene015640:CDS
AAATTTATTGCAAAGATTGT+TGG	0.402173	4.1:-1489201	MS.gene015640:CDS
AACAAGACCCGTTCTTGAAA+TGG	0.414290	4.1:+1489142	None:intergenic
AACACTGTTGGCTGCTTGCA+GGG	0.405350	4.1:-1489700	MS.gene015640:CDS
AACAGTATGGAGAGGGATTT+TGG	0.186162	4.1:-1489849	MS.gene015640:CDS
AACATGGCAATTGGGTGGAA+CGG	0.566305	4.1:+1490892	None:intergenic
AAGAACGGGTCTTGTTCATG+TGG	0.596449	4.1:-1489135	MS.gene015640:CDS
AAGGGAGTTGAAGAGGTGGA+GGG	0.569974	4.1:+1491021	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGGAAACAACATCAA+GGG	+	chr4.1:1490353-1490372	None:intergenic	30.0%
AGAACACACATGAGAAAAAA+GGG	-	chr4.1:1490784-1490803	MS.gene015640:CDS	30.0%
AGAATGGTGAATTTGATAGA+GGG	-	chr4.1:1490035-1490054	MS.gene015640:CDS	30.0%
CATGAATGTATAGTTAGACT+TGG	-	chr4.1:1490172-1490191	MS.gene015640:CDS	30.0%
GAGCATGTTGATGTTAATAA+AGG	-	chr4.1:1489836-1489855	MS.gene015640:CDS	30.0%
GATTTCATTTCTAACATGAG+AGG	-	chr4.1:1490577-1490596	MS.gene015640:CDS	30.0%
TAAGTTCCTTATCAACATCA+TGG	+	chr4.1:1490978-1490997	None:intergenic	30.0%
TATGCTAAGTTTCATAATGC+AGG	-	chr4.1:1489584-1489603	MS.gene015640:CDS	30.0%
TATTGCAAAGATTGTTGGAA+GGG	-	chr4.1:1491131-1491150	MS.gene015640:CDS	30.0%
TTATGTCATTGACACAAATC+AGG	-	chr4.1:1490948-1490967	MS.gene015640:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	1489122	1491227	1489122	ID=MS.gene015640
chr4.1	mRNA	1489122	1491227	1489122	ID=MS.gene015640.t1;Parent=MS.gene015640
chr4.1	exon	1489122	1491227	1489122	ID=MS.gene015640.t1.exon1;Parent=MS.gene015640.t1
chr4.1	CDS	1489122	1491227	1489122	ID=cds.MS.gene015640.t1;Parent=MS.gene015640.t1

Gene Sequence

>MS.gene015640

ATGAGTAATTCCACACAACACACGATCAGCAACATCCTAAGAAAAACCTCAAACAAAACACTTTCAGTTTCAACAAGACAAGCAAAACAACTACACGCACACATCGTAAAAACCAAAGGAACATTGCACTCCGACAACATCCTCGTACTCTCACTCTACTCAAACCTCAACCTCTTACACCATTCCCTCCACCTCTTCAACTCCCTTCCATCTCCTCCACCACCTCTTGCATGGTCTTCTATAATCAAATGCTACACTTCTCACTCTCTTCTTCACCTTTCCTTCTCTTCCTTCAACTCCATGCGCTCTCTCTCCGTTCCACCCAATTGCCATGTTTTCCCTTCTCTTCTCAAAGCTTCCACTCTTTTGAAACACCGTAAACTCGCTCATTCGCTCCACGCTTGCACCGTTCGGCTCGGTCTTGATTCTGATCTCTATATTGCCAACGCACTAATCAATATGTATGCTAAGTTTCATAATGCAGGCAAGGTGTTTGATGTATTTCCTAAGAGAGGGGAATCTGGGATTGATTGTGTTAAGAAGGTTTTTGATATGATGCATGTTAGGGATGTTGTCTCGTGGAATACTCTTATTGCGGGGTTTGCTCAAAATGGGATGTATATTGAAGCATTGGACATGGTTAGAGAGATGGGGAAGAATGGTAAATTGAAGCCGGATTCGTTCACTCTTTCGAGTATTCTTCCTATTTTCGCGGAGCATGTTGATGTTAATAAAGGAAAAGAGATTCATGGGTATGGTGTAAGAAATGGGTTTGATGGGGATGTTTTTATTGGGAGTAGTTTGATTGATATGTATGCAAAGTGTAATAGACTGGAATGTTCGCTGCGTGCTTTTTACATTTTGCCAAGGAAAGATGCTATTTCTTGGAACTCTATCATTGCTGGTTGTGTGCAGAATGGTGAATTTGATAGAGGGCTTGGATTTTTTCGCCGGATGTTGAAGGAAAATGTGAAACCTATGGCTGTTTCTTTCTCTAGTGTTATACCTGCTTGTGCTCATTTGACTGCTTTGAATTTGGGGAGGCAGCTTCATGAATGTATAGTTAGACTTGGTTTTGATGATAATGAGTTTATAGCTAGCTCTCTAGTGGACATGTATGCAAAATGTGGTAACATTAACATGGCTAGATATGTTTTTGATAGAATAGAGAAGTGTGACATGGTGGCGTGGACTGCCATCATTATGGGATGTGCAATGCACGGGCATGCCCTTGATGTTGTTTCCTTGTTTGAGAACATGTTGGGGGATGGAGTAAGGCCTTGTTATGTGGCATTCATGGCTGTTTTGACTGCGTGTAGTCATGCTGGGTTGGTAGATGAAGGTTGGAGGTATTTTAACAGTATGGAGAGGGATTTTGGAATTGCTCCTGGTTTGGAGCACTATGCTGCTGTTGCTGACCTGCTTGGTAGAGCTGGAAGATTGGAGGAAGCTTATGATTTCATTTCTAACATGAGAGGAGTACAACCCACTGGGAGTGTGTGGTCAACACTGTTGGCTGCTTGCAGGGCTCGTAAGAGTGTTGAATTAGCTGAAAAGGTTCTTGACAAGTTACTTTTGGTTGACTCTGAAAACATGGGGGCTTATGTTTTAATGTCAAACATCTATTCAGCTGCATGGAGATGGAAAGACGCTGCAAGATTGAGAACACACATGAGAAAAAAGGGCTTGAAGAAAACCCCTGCATGCAGCTGGATAGAAGTTGGAAATCAAGTGCATACTTTTATGGCTGGAGATAAATCACATCCTTATTATGACAAAATCAACAAGGCATTGGATGTTTTATTGGAACAGATGGAGAAAGAAGGTTATGTCATTGACACAAATCAGGTGCTCCATGATGTTGATAAGGAACTTAAACGTGAGTTGTTACACAATCATAGTGAGAGACTTGCCATAGCATATGGCATCATTAGCACTACTGCTGGTGCAACCATCCGAGTAATAAAGAATATTCGAGTGTGCACGGACTGCCACACTGCAATTAAATTTATTGCAAAGATTGTTGGAAGGGAAATCGTGGTGAGGGATAACAGCCGATTTCACCATTTCAAGAACGGGTCTTGTTCATGTGGTGATTATTGGTGA

Protein sequence

>MS.gene015640.t1

MSNSTQHTISNILRKTSNKTLSVSTRQAKQLHAHIVKTKGTLHSDNILVLSLYSNLNLLHHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNCHVFPSLLKASTLLKHRKLAHSLHACTVRLGLDSDLYIANALINMYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMHVRDVVSWNTLIAGFAQNGMYIEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYGVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALNLGRQLHECIVRLGFDDNEFIASSLVDMYAKCGNINMARYVFDRIEKCDMVAWTAIIMGCAMHGHALDVVSLFENMLGDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSTLLAACRARKSVELAEKVLDKLLLVDSENMGAYVLMSNIYSAAWRWKDAARLRTHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDKELKRELLHNHSERLAIAYGIISTTAGATIRVIKNIRVCTDCHTAIKFIAKIVGREIVVRDNSRFHHFKNGSCSCGDYW