AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015649

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015649.t1 MTR_1g115415 98.030 406 8 0 13 418 77 482 0.0 799
MS.gene015649.t1 MTR_8g105560 82.310 407 19 2 13 419 55 408 0.0 643
MS.gene015649.t1 MTR_5g068860 53.690 393 180 1 14 404 110 502 1.61e-151 440
MS.gene015649.t1 MTR_4g070060 25.000 360 260 4 40 392 235 591 7.62e-35 136
MS.gene015649.t1 MTR_6g003960 27.164 335 238 6 60 392 263 593 1.73e-27 115
MS.gene015649.t1 MTR_2g034600 27.972 286 162 5 144 391 208 487 1.09e-26 112
MS.gene015649.t1 MTR_2g034600 21.875 224 167 3 43 262 211 430 5.25e-12 67.8
MS.gene015649.t1 MTR_2g034600 27.972 286 162 5 144 391 269 548 1.24e-26 112
MS.gene015649.t1 MTR_2g034600 21.875 224 167 3 43 262 272 491 6.39e-12 67.8
MS.gene015649.t1 MTR_2g034600 27.972 286 162 5 144 391 273 552 1.41e-26 112
MS.gene015649.t1 MTR_2g034600 21.875 224 167 3 43 262 276 495 5.83e-12 67.8
MS.gene015649.t1 MTR_4g084630 22.436 312 198 5 81 387 47 319 6.70e-26 107
MS.gene015649.t1 MTR_4g084630 25.108 231 147 3 18 247 45 250 2.09e-17 83.2
MS.gene015649.t1 MTR_5g094610 24.373 279 200 7 97 368 176 450 7.64e-20 92.0
MS.gene015649.t1 MTR_5g094610 24.627 268 186 8 17 272 194 457 4.02e-16 80.5
MS.gene015649.t1 MTR_2g049780 26.923 208 116 3 217 388 99 306 4.16e-16 79.0
MS.gene015649.t1 MTR_5g041630 26.482 253 142 6 146 392 88 302 5.02e-14 72.8
MS.gene015649.t1 MTR_2g067230 23.659 317 151 11 81 392 75 305 1.38e-13 71.6
MS.gene015649.t1 MTR_3g092710 22.819 298 184 7 94 386 235 491 9.42e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015649.t1 AT2G44020 80.788 406 78 0 13 418 82 487 0.0 692
MS.gene015649.t1 AT4G02990 52.284 394 188 0 7 400 111 504 2.60e-151 440
MS.gene015649.t1 AT4G02990 52.284 394 188 0 7 400 111 504 2.60e-151 440
MS.gene015649.t1 AT2G21710 25.545 321 237 2 72 391 278 597 2.70e-38 146
MS.gene015649.t1 AT2G21710 26.267 217 155 2 36 247 309 525 2.97e-17 84.3
MS.gene015649.t1 AT1G78930 26.488 336 240 6 60 392 249 580 1.27e-31 127
MS.gene015649.t1 AT4G38160 25.547 274 195 4 123 390 54 324 6.34e-29 115
MS.gene015649.t1 AT4G38160 23.902 205 154 2 60 262 63 267 1.07e-15 78.2
MS.gene015649.t1 AT4G38160 25.547 274 195 4 123 390 54 324 6.34e-29 115
MS.gene015649.t1 AT4G38160 23.902 205 154 2 60 262 63 267 1.07e-15 78.2
MS.gene015649.t1 AT4G38160 25.547 274 195 4 123 390 54 324 1.10e-28 115
MS.gene015649.t1 AT4G38160 23.902 205 154 2 60 262 63 267 1.27e-15 78.2
MS.gene015649.t1 AT4G38160 25.547 274 195 4 123 390 54 324 1.60e-28 115
MS.gene015649.t1 AT4G38160 23.902 205 154 2 60 262 63 267 1.59e-15 78.2
MS.gene015649.t1 AT2G21710 23.571 280 212 2 72 350 278 556 7.56e-27 113
MS.gene015649.t1 AT2G21710 26.267 217 155 2 36 247 309 525 2.38e-17 84.7
MS.gene015649.t1 AT2G21710 23.381 278 211 2 72 348 278 554 6.54e-26 110
MS.gene015649.t1 AT2G21710 26.267 217 155 2 36 247 309 525 2.57e-17 84.3
MS.gene015649.t1 AT4G14605 24.731 372 262 8 20 387 111 468 5.06e-24 104
MS.gene015649.t1 AT4G14605 24.731 372 262 8 20 387 111 468 5.06e-24 104
MS.gene015649.t1 AT5G55580 26.484 219 154 4 153 366 119 335 2.53e-19 89.7
MS.gene015649.t1 AT5G55580 25.385 260 179 7 15 262 79 335 1.31e-16 81.6
MS.gene015649.t1 AT5G55580 23.853 218 160 3 79 294 117 330 2.00e-14 75.1
MS.gene015649.t1 AT5G55580 26.484 219 154 4 153 366 225 441 1.72e-18 87.8
MS.gene015649.t1 AT5G55580 25.385 260 179 7 15 262 185 441 1.64e-16 81.6
MS.gene015649.t1 AT5G55580 23.853 218 160 3 79 294 223 436 5.75e-14 73.9
MS.gene015649.t1 AT2G34620 27.138 269 153 8 127 392 68 296 1.70e-15 77.0
MS.gene015649.t1 AT5G54180 22.973 296 185 7 96 388 235 490 2.72e-15 78.2
MS.gene015649.t1 AT1G61980 24.118 340 235 10 72 398 81 410 8.65e-15 76.3
MS.gene015649.t1 AT1G61980 24.118 340 235 10 72 398 81 410 8.65e-15 76.3
MS.gene015649.t1 AT1G61980 24.118 340 235 10 72 398 81 410 8.65e-15 76.3
MS.gene015649.t1 AT2G03050 29.317 249 151 9 153 390 38 272 2.63e-13 70.5
MS.gene015649.t1 AT2G03050 29.317 249 151 9 153 390 39 273 2.98e-13 70.5
MS.gene015649.t1 AT5G55580 25.000 172 127 2 79 248 223 394 1.87e-12 68.9
MS.gene015649.t1 AT5G55580 26.943 193 129 5 15 195 185 377 2.65e-12 68.6
MS.gene015649.t1 AT2G36000 23.506 251 169 8 153 394 79 315 3.18e-12 67.8
MS.gene015649.t1 AT2G36000 23.387 248 167 8 153 391 79 312 8.06e-12 66.6
MS.gene015649.t1 AT1G62110 21.144 402 226 9 75 398 58 446 7.52e-11 64.3

Find 91 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTATCCTTTGATTT+TGG 0.073063 4.4:-1908098 MS.gene015649:CDS
GTTGAGTTTATTCAGAAATT+AGG 0.154219 4.4:-1908139 MS.gene015649:CDS
GTTGATTACTTGGTTAATTT+AGG 0.165369 4.4:-1907719 MS.gene015649:CDS
GCTCAGTATCCGCAGATTAT+TGG 0.227610 4.4:-1907557 MS.gene015649:CDS
TCCTGATGAATTGCAGGATT+TGG 0.241747 4.4:-1908197 MS.gene015649:CDS
TTGATTACTTGGTTAATTTA+GGG 0.248506 4.4:-1907718 MS.gene015649:CDS
GGATAAAATGTTCGTTGAAT+TGG 0.261081 4.4:-1907169 MS.gene015649:CDS
AGAATACTTCACTTATAGTT+TGG 0.295127 4.4:-1907234 MS.gene015649:CDS
CTCAGTATCCGCAGATTATT+GGG 0.297010 4.4:-1907556 MS.gene015649:CDS
CTTCGATTATCTCAAGGGTT+TGG 0.298946 4.4:-1908227 MS.gene015649:CDS
GTTGATTGTTTGATTAGTTT+TGG 0.307251 4.4:-1907611 MS.gene015649:CDS
CTCTTAAGCCTCTGGTATCT+AGG 0.309752 4.4:+1907197 None:intergenic
TTCGATTATCTCAAGGGTTT+GGG 0.314201 4.4:-1908226 MS.gene015649:CDS
TTGAGTTTATTCAGAAATTA+GGG 0.329984 4.4:-1908138 MS.gene015649:CDS
GATTATTGGGTTGCCTCTTA+AGG 0.337713 4.4:-1907543 MS.gene015649:CDS
CTTCAACCGTTGAAGTTATG+AGG 0.356463 4.4:-1908168 MS.gene015649:CDS
AATTATTCCTGATGAATTGC+AGG 0.358521 4.4:-1908203 MS.gene015649:CDS
CCTGTTATTAAGTTTCTTAG+AGG 0.361016 4.4:-1907941 MS.gene015649:CDS
AAACTATAAGTGAAGTATTC+TGG 0.362016 4.4:+1907236 None:intergenic
TCAAAATGTGATTATGAAAC+CGG 0.364444 4.4:-1907417 MS.gene015649:CDS
CTAATCAAACAATCAACATT+AGG 0.365413 4.4:+1907617 None:intergenic
CCTCTAAGAAACTTAATAAC+AGG 0.368936 4.4:+1907941 None:intergenic
TTAGTATTGGTGTTAATCCT+AGG 0.373470 4.4:-1907814 MS.gene015649:CDS
TCCCCTTGCTCTTAAGCCTC+TGG 0.375995 4.4:+1907189 None:intergenic
GAGATTTGAAGAGAGATTGC+AGG 0.401297 4.4:-1907126 MS.gene015649:CDS
GTCGCAGGATGTGGCTAGTA+TGG 0.403205 4.4:-1907366 MS.gene015649:CDS
GTAGCTTATCTTGTTAGTAT+TGG 0.406186 4.4:-1907827 MS.gene015649:CDS
CTCATAACTTCAACGGTTGA+AGG 0.413170 4.4:+1908169 None:intergenic
CTGAAAACTATGTCGTTTCC+TGG 0.419468 4.4:+1907041 None:intergenic
GAGAAAAGAGCTTATTTACT+TGG 0.423347 4.4:-1907665 MS.gene015649:CDS
ACCACCCTCGCAAACCCTTC+CGG 0.428125 4.4:+1907470 None:intergenic
GAAGACAATTTAGCCTTAAG+AGG 0.431995 4.4:+1907530 None:intergenic
GCAATCTCTCTTCAAATCTC+TGG 0.437449 4.4:+1907129 None:intergenic
GAATGAAGGACCTATACTTT+CGG 0.437668 4.4:+1907088 None:intergenic
TCCGGAAGGGTTTGCGAGGG+TGG 0.445823 4.4:-1907471 MS.gene015649:CDS
GGTGTTAATCCTAGGGATAT+TGG 0.451217 4.4:-1907806 MS.gene015649:CDS
TACTTCTTCAAAAGTGAGAT+GGG 0.459036 4.4:-1907287 MS.gene015649:CDS
GGAAGGGTTTGCGAGGGTGG+TGG 0.459551 4.4:-1907468 MS.gene015649:CDS
GAGGAAGGAATGTTTGCCTT+CGG 0.461475 4.4:-1907585 MS.gene015649:CDS
TCCAAATCCTGCAATTCATC+AGG 0.465291 4.4:+1908196 None:intergenic
ATCCTAGCTAGAATCTTCTT+AGG 0.491214 4.4:+1907692 None:intergenic
GGGATTTCTAGGTCTAAACT+TGG 0.492563 4.4:-1908022 MS.gene015649:CDS
ATAGGTCCTTCATTCCGTAT+TGG 0.501976 4.4:-1907080 MS.gene015649:CDS
TACCAGAGGCTTAAGAGCAA+GGG 0.502139 4.4:-1907191 MS.gene015649:CDS
CATCATCTTCGATTATCTCA+AGG 0.503798 4.4:-1908233 MS.gene015649:CDS
GGCAATACCGTCGCAGGATG+TGG 0.504137 4.4:-1907375 MS.gene015649:CDS
TTACTTCTTCAAAAGTGAGA+TGG 0.508844 4.4:-1907288 MS.gene015649:CDS
TCCTAGGGATATTGGTCCAA+TGG 0.513309 4.4:-1907798 MS.gene015649:CDS
GTTACATGGGGTGTAATTCA+AGG 0.515509 4.4:-1908282 None:intergenic
TTAACCAAGTAATCAACAAA+AGG 0.515918 4.4:+1907725 None:intergenic
TTTGAAGCTGAAGATTGATC+CGG 0.520863 4.4:-1907489 MS.gene015649:CDS
GATGTGGAGAAAGATGATAT+TGG 0.522013 4.4:-1907914 MS.gene015649:CDS
TAGTATTGGTGTTAATCCTA+GGG 0.522188 4.4:-1907813 MS.gene015649:CDS
TATATTGAAACCGAAAGTAT+AGG 0.527577 4.4:-1907098 MS.gene015649:CDS
TAAGGATACTGTGTAACCAT+TGG 0.531997 4.4:+1907782 None:intergenic
ATCATCTTCGATTATCTCAA+GGG 0.534022 4.4:-1908232 MS.gene015649:CDS
GCTCTAATTTCCCACCAATA+CGG 0.538425 4.4:+1907066 None:intergenic
GGTCCTTCATTCCGTATTGG+TGG 0.539928 4.4:-1907077 MS.gene015649:CDS
AGTTTAAACCCTAAAAGTTG+AGG 0.546911 4.4:+1907872 None:intergenic
AGCTGAAGATTGATCCGGAA+GGG 0.553058 4.4:-1907484 MS.gene015649:CDS
TTCCCACCAATACGGAATGA+AGG 0.553754 4.4:+1907074 None:intergenic
ACTCGCAGCGCAATCAATTG+AGG 0.555993 4.4:+1907332 None:intergenic
GTCCTTCATTCCGTATTGGT+GGG 0.557863 4.4:-1907076 MS.gene015649:CDS
TTCAACCGTTGAAGTTATGA+GGG 0.560167 4.4:-1908167 MS.gene015649:CDS
AGATTTGAAGAGAGATTGCA+GGG 0.561148 4.4:-1907125 MS.gene015649:CDS
ATACCAGAGGCTTAAGAGCA+AGG 0.565715 4.4:-1907192 MS.gene015649:CDS
CGCAAAGAGAAACTCGTTCG+CGG 0.567840 4.4:-1908258 MS.gene015649:CDS
GAAGATTCTAGCTAGGATGT+TGG 0.572863 4.4:-1907687 MS.gene015649:CDS
ACACTAGCATGCAAAACTTG+TGG 0.577739 4.4:+1907980 None:intergenic
TGGTAGGGCAATACCGTCGC+AGG 0.580954 4.4:-1907381 MS.gene015649:CDS
GCAAAGAGAAACTCGTTCGC+GGG 0.581503 4.4:-1908257 MS.gene015649:CDS
ACGTTCCCTCATAACTTCAA+CGG 0.581773 4.4:+1908162 None:intergenic
GAGGCCTGTAAAAGAGCTTG+TGG 0.585209 4.4:-1907264 MS.gene015649:CDS
ACACTACAGCCCAAAATCAA+AGG 0.590303 4.4:+1908088 None:intergenic
ACCAGAGGCTTAAGAGCAAG+GGG 0.605082 4.4:-1907190 MS.gene015649:CDS
GGTGGGAAATTAGAGCTACC+AGG 0.611291 4.4:-1907059 MS.gene015649:CDS
TTGATCCGGAAGGGTTTGCG+AGG 0.614047 4.4:-1907475 MS.gene015649:CDS
TGCCTAAGAAGATTCTAGCT+AGG 0.620780 4.4:-1907694 MS.gene015649:CDS
TCTTCAAAAGTGAGATGGGG+AGG 0.627180 4.4:-1907283 MS.gene015649:CDS
GTTTCTTAGAGGACTTGATG+TGG 0.627869 4.4:-1907930 MS.gene015649:CDS
GGTGGTGGAGAAGATGCCAC+AGG 0.628330 4.4:-1907453 MS.gene015649:CDS
ACCATTGGACCAATATCCCT+AGG 0.638044 4.4:+1907797 None:intergenic
ACTTCTTCAAAAGTGAGATG+GGG 0.645282 4.4:-1907286 MS.gene015649:CDS
TGATGAAGACTAACCACCTG+TGG 0.651476 4.4:+1907437 None:intergenic
TGATCCGGAAGGGTTTGCGA+GGG 0.652425 4.4:-1907474 MS.gene015649:CDS
AAGCTGAAGATTGATCCGGA+AGG 0.664980 4.4:-1907485 MS.gene015649:CDS
ATACTAGCCACATCCTGCGA+CGG 0.678965 4.4:+1907368 None:intergenic
GGTGGAGAAGATGCCACAGG+TGG 0.679410 4.4:-1907450 MS.gene015649:CDS
GGATACTGAGCAATAACCGA+AGG 0.689064 4.4:+1907569 None:intergenic
AGAGGCAACCCAATAATCTG+CGG 0.697237 4.4:+1907548 None:intergenic
GAATTAAACCTAGATACCAG+AGG 0.721224 4.4:-1907205 MS.gene015649:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAACTGAAAAAATATTGTT+GGG + chr4.4:1907809-1907828 None:intergenic 20.0%
!! TCAAACTGAAAAAATATTGT+TGG + chr4.4:1907810-1907829 None:intergenic 20.0%
!! TTGAGTTTATTCAGAAATTA+GGG - chr4.4:1907176-1907195 MS.gene015649:CDS 20.0%
!! TTGATTACTTGGTTAATTTA+GGG - chr4.4:1907596-1907615 MS.gene015649:CDS 20.0%
!!! AAAAATATCCTCAACTTTTA+GGG - chr4.4:1907434-1907453 MS.gene015649:CDS 20.0%
!!! TAGGGTATTTAGAAAAAATT+GGG - chr4.4:1907272-1907291 MS.gene015649:CDS 20.0%
!!! TTAGGGTATTTAGAAAAAAT+TGG - chr4.4:1907271-1907290 MS.gene015649:CDS 20.0%
! AGAATACTTCACTTATAGTT+TGG - chr4.4:1908080-1908099 MS.gene015649:CDS 25.0%
! CTAATCAAACAATCAACATT+AGG + chr4.4:1907700-1907719 None:intergenic 25.0%
! GTTGAGTTTATTCAGAAATT+AGG - chr4.4:1907175-1907194 MS.gene015649:CDS 25.0%
! GTTGATTACTTGGTTAATTT+AGG - chr4.4:1907595-1907614 MS.gene015649:CDS 25.0%
! TAGAAAAAATTGGGATTTCT+AGG - chr4.4:1907281-1907300 MS.gene015649:CDS 25.0%
! TCAAAATGTGATTATGAAAC+CGG - chr4.4:1907897-1907916 MS.gene015649:CDS 25.0%
! TTAACCAAGTAATCAACAAA+AGG + chr4.4:1907592-1907611 None:intergenic 25.0%
!! AAAAACATGATTCCTGTTTT+AGG - chr4.4:1907253-1907272 MS.gene015649:CDS 25.0%
!! AAAACATGATTCCTGTTTTA+GGG - chr4.4:1907254-1907273 MS.gene015649:CDS 25.0%
!! AAACTATAAGTGAAGTATTC+TGG + chr4.4:1908081-1908100 None:intergenic 25.0%
!! CAAAAATATCCTCAACTTTT+AGG - chr4.4:1907433-1907452 MS.gene015649:CDS 25.0%
!! TATATTGAAACCGAAAGTAT+AGG - chr4.4:1908216-1908235 MS.gene015649:CDS 25.0%
!! TTTTCTAAATACCCTAAAAC+AGG + chr4.4:1907268-1907287 None:intergenic 25.0%
!!! AAATCAGTATCCTTTGATTT+TGG - chr4.4:1907216-1907235 MS.gene015649:CDS 25.0%
!!! AATCAGTATCCTTTGATTTT+GGG - chr4.4:1907217-1907236 MS.gene015649:CDS 25.0%
!!! ACACAGTATCCTTATTTTTT+AGG - chr4.4:1907541-1907560 MS.gene015649:CDS 25.0%
!!! CACAGTATCCTTATTTTTTA+GGG - chr4.4:1907542-1907561 MS.gene015649:CDS 25.0%
!!! GTTGATTGTTTGATTAGTTT+TGG - chr4.4:1907703-1907722 MS.gene015649:CDS 25.0%
AATTATTCCTGATGAATTGC+AGG - chr4.4:1907111-1907130 MS.gene015649:CDS 30.0%
ACTCTCATCCCTAAAAAATA+AGG + chr4.4:1907553-1907572 None:intergenic 30.0%
AGTTTAAACCCTAAAAGTTG+AGG + chr4.4:1907445-1907464 None:intergenic 30.0%
ATCATCTTCGATTATCTCAA+GGG - chr4.4:1907082-1907101 MS.gene015649:CDS 30.0%
CCTGTTATTAAGTTTCTTAG+AGG - chr4.4:1907373-1907392 MS.gene015649:CDS 30.0%
GAGAAAAGAGCTTATTTACT+TGG - chr4.4:1907649-1907668 MS.gene015649:CDS 30.0%
GGATAAAATGTTCGTTGAAT+TGG - chr4.4:1908145-1908164 MS.gene015649:CDS 30.0%
GTAGCTTATCTTGTTAGTAT+TGG - chr4.4:1907487-1907506 MS.gene015649:CDS 30.0%
TACTTCTTCAAAAGTGAGAT+GGG - chr4.4:1908027-1908046 MS.gene015649:CDS 30.0%
TTACTTCTTCAAAAGTGAGA+TGG - chr4.4:1908026-1908045 MS.gene015649:CDS 30.0%
! CCTCTAAGAAACTTAATAAC+AGG + chr4.4:1907376-1907395 None:intergenic 30.0%
!! AAAGCCTTTTGTTGATTACT+TGG - chr4.4:1907585-1907604 MS.gene015649:CDS 30.0%
!! TAGTATTGGTGTTAATCCTA+GGG - chr4.4:1907501-1907520 MS.gene015649:CDS 30.0%
!! TTAGTATTGGTGTTAATCCT+AGG - chr4.4:1907500-1907519 MS.gene015649:CDS 30.0%
!!! CTTTTAGGGTTTAAACTTGA+AGG - chr4.4:1907448-1907467 MS.gene015649:CDS 30.0%
!!! GTTTGATTAGTTTTGGTTTG+AGG - chr4.4:1907710-1907729 MS.gene015649:CDS 30.0%
!!! TATTTTTTAGGGATGAGAGT+TGG - chr4.4:1907553-1907572 MS.gene015649:CDS 30.0%
ACTTCTTCAAAAGTGAGATG+GGG - chr4.4:1908028-1908047 MS.gene015649:CDS 35.0%
AGATTTGAAGAGAGATTGCA+GGG - chr4.4:1908189-1908208 MS.gene015649:CDS 35.0%
ATCCTAGCTAGAATCTTCTT+AGG + chr4.4:1907625-1907644 None:intergenic 35.0%
CATCATCTTCGATTATCTCA+AGG - chr4.4:1907081-1907100 MS.gene015649:CDS 35.0%
CTACCAAGTAAAAACTCAAC+CGG + chr4.4:1907919-1907938 None:intergenic 35.0%
GAATGAAGGACCTATACTTT+CGG + chr4.4:1908229-1908248 None:intergenic 35.0%
GAATTAAACCTAGATACCAG+AGG - chr4.4:1908109-1908128 MS.gene015649:CDS 35.0%
GATGTGGAGAAAGATGATAT+TGG - chr4.4:1907400-1907419 MS.gene015649:CDS 35.0%
TAAGGATACTGTGTAACCAT+TGG + chr4.4:1907535-1907554 None:intergenic 35.0%
TTCAACCGTTGAAGTTATGA+GGG - chr4.4:1907147-1907166 MS.gene015649:CDS 35.0%
TTCGATTATCTCAAGGGTTT+GGG - chr4.4:1907088-1907107 MS.gene015649:CDS 35.0%
! AAACCGGTTGAGTTTTTACT+TGG - chr4.4:1907913-1907932 MS.gene015649:CDS 35.0%
! GGTTGAGTTTTTACTTGGTA+GGG - chr4.4:1907918-1907937 MS.gene015649:CDS 35.0%
! TTTGAAGCTGAAGATTGATC+CGG - chr4.4:1907825-1907844 MS.gene015649:CDS 35.0%
!! GAAGACAATTTAGCCTTAAG+AGG + chr4.4:1907787-1907806 None:intergenic 35.0%
!!! GATTAGTTTTGGTTTGAGGA+AGG - chr4.4:1907714-1907733 MS.gene015649:CDS 35.0%
ACACTACAGCCCAAAATCAA+AGG + chr4.4:1907229-1907248 None:intergenic 40.0%
ACACTAGCATGCAAAACTTG+TGG + chr4.4:1907337-1907356 None:intergenic 40.0%
ACGTTCCCTCATAACTTCAA+CGG + chr4.4:1907155-1907174 None:intergenic 40.0%
ATAGGTCCTTCATTCCGTAT+TGG - chr4.4:1908234-1908253 MS.gene015649:CDS 40.0%
CTCAGTATCCGCAGATTATT+GGG - chr4.4:1907758-1907777 MS.gene015649:CDS 40.0%
CTCATAACTTCAACGGTTGA+AGG + chr4.4:1907148-1907167 None:intergenic 40.0%
CTTCAACCGTTGAAGTTATG+AGG - chr4.4:1907146-1907165 MS.gene015649:CDS 40.0%
CTTCGATTATCTCAAGGGTT+TGG - chr4.4:1907087-1907106 MS.gene015649:CDS 40.0%
GAGATTTGAAGAGAGATTGC+AGG - chr4.4:1908188-1908207 MS.gene015649:CDS 40.0%
GCAATCTCTCTTCAAATCTC+TGG + chr4.4:1908188-1908207 None:intergenic 40.0%
GCTCTAATTTCCCACCAATA+CGG + chr4.4:1908251-1908270 None:intergenic 40.0%
GGTGTTAATCCTAGGGATAT+TGG - chr4.4:1907508-1907527 MS.gene015649:CDS 40.0%
GTTTCTTAGAGGACTTGATG+TGG - chr4.4:1907384-1907403 MS.gene015649:CDS 40.0%
TCCAAATCCTGCAATTCATC+AGG + chr4.4:1907121-1907140 None:intergenic 40.0%
TCCTGATGAATTGCAGGATT+TGG - chr4.4:1907117-1907136 MS.gene015649:CDS 40.0%
! AACTCCACAAGCTCTTTTAC+AGG + chr4.4:1908057-1908076 None:intergenic 40.0%
! CGGTTGAGTTTTTACTTGGT+AGG - chr4.4:1907917-1907936 MS.gene015649:CDS 40.0%
! CTGAAAACTATGTCGTTTCC+TGG + chr4.4:1908276-1908295 None:intergenic 40.0%
! GAAGATTCTAGCTAGGATGT+TGG - chr4.4:1907627-1907646 MS.gene015649:CDS 40.0%
! GATTATTGGGTTGCCTCTTA+AGG - chr4.4:1907771-1907790 MS.gene015649:CDS 40.0%
! GGGATTTCTAGGTCTAAACT+TGG - chr4.4:1907292-1907311 MS.gene015649:CDS 40.0%
! TGATTTTGGGCTGTAGTGTT+CGG - chr4.4:1907230-1907249 MS.gene015649:CDS 40.0%
! TGCCTAAGAAGATTCTAGCT+AGG - chr4.4:1907620-1907639 MS.gene015649:CDS 40.0%
AAGCTGAAGATTGATCCGGA+AGG - chr4.4:1907829-1907848 MS.gene015649:CDS 45.0%
ACCATTGGACCAATATCCCT+AGG + chr4.4:1907520-1907539 None:intergenic 45.0%
AGAGGCAACCCAATAATCTG+CGG + chr4.4:1907769-1907788 None:intergenic 45.0%
AGCTGAAGATTGATCCGGAA+GGG - chr4.4:1907830-1907849 MS.gene015649:CDS 45.0%
ATACCAGAGGCTTAAGAGCA+AGG - chr4.4:1908122-1908141 MS.gene015649:CDS 45.0%
CTCTTAAGCCTCTGGTATCT+AGG + chr4.4:1908120-1908139 None:intergenic 45.0%
GAGGAAGGAATGTTTGCCTT+CGG - chr4.4:1907729-1907748 MS.gene015649:CDS 45.0%
GCTCAGTATCCGCAGATTAT+TGG - chr4.4:1907757-1907776 MS.gene015649:CDS 45.0%
GGATACTGAGCAATAACCGA+AGG + chr4.4:1907748-1907767 None:intergenic 45.0%
TACCAGAGGCTTAAGAGCAA+GGG - chr4.4:1908123-1908142 MS.gene015649:CDS 45.0%
TCCTAGGGATATTGGTCCAA+TGG - chr4.4:1907516-1907535 MS.gene015649:CDS 45.0%
TCTTCAAAAGTGAGATGGGG+AGG - chr4.4:1908031-1908050 MS.gene015649:CDS 45.0%
TGATGAAGACTAACCACCTG+TGG + chr4.4:1907880-1907899 None:intergenic 45.0%
TTCCCACCAATACGGAATGA+AGG + chr4.4:1908243-1908262 None:intergenic 45.0%
! GTCCTTCATTCCGTATTGGT+GGG - chr4.4:1908238-1908257 MS.gene015649:CDS 45.0%
ACCAGAGGCTTAAGAGCAAG+GGG - chr4.4:1908124-1908143 MS.gene015649:CDS 50.0%
ACTCGCAGCGCAATCAATTG+AGG + chr4.4:1907985-1908004 None:intergenic 50.0%
ATACTAGCCACATCCTGCGA+CGG + chr4.4:1907949-1907968 None:intergenic 50.0%
CGCAAAGAGAAACTCGTTCG+CGG - chr4.4:1907056-1907075 MS.gene015649:CDS 50.0%
GAGGCCTGTAAAAGAGCTTG+TGG - chr4.4:1908050-1908069 MS.gene015649:CDS 50.0%
GCAAAGAGAAACTCGTTCGC+GGG - chr4.4:1907057-1907076 MS.gene015649:CDS 50.0%
GGTCCTTCATTCCGTATTGG+TGG - chr4.4:1908237-1908256 MS.gene015649:CDS 50.0%
GGTGGGAAATTAGAGCTACC+AGG - chr4.4:1908255-1908274 MS.gene015649:CDS 50.0%
GTCGCAGGATGTGGCTAGTA+TGG - chr4.4:1907948-1907967 MS.gene015649:CDS 55.0%
TCCCCTTGCTCTTAAGCCTC+TGG + chr4.4:1908128-1908147 None:intergenic 55.0%
TGATCCGGAAGGGTTTGCGA+GGG - chr4.4:1907840-1907859 MS.gene015649:CDS 55.0%
TTGATCCGGAAGGGTTTGCG+AGG - chr4.4:1907839-1907858 MS.gene015649:CDS 55.0%
ACCACCCTCGCAAACCCTTC+CGG + chr4.4:1907847-1907866 None:intergenic 60.0%
GGCAATACCGTCGCAGGATG+TGG - chr4.4:1907939-1907958 MS.gene015649:CDS 60.0%
GGTGGAGAAGATGCCACAGG+TGG - chr4.4:1907864-1907883 MS.gene015649:CDS 60.0%
TGGTAGGGCAATACCGTCGC+AGG - chr4.4:1907933-1907952 MS.gene015649:CDS 60.0%
!! GGTGGTGGAGAAGATGCCAC+AGG - chr4.4:1907861-1907880 MS.gene015649:CDS 60.0%
GGAAGGGTTTGCGAGGGTGG+TGG - chr4.4:1907846-1907865 MS.gene015649:CDS 65.0%
TCCGGAAGGGTTTGCGAGGG+TGG - chr4.4:1907843-1907862 MS.gene015649:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 1907037 1908299 1907037 ID=MS.gene015649
chr4.4 mRNA 1907037 1908299 1907037 ID=MS.gene015649.t1;Parent=MS.gene015649
chr4.4 exon 1907037 1908299 1907037 ID=MS.gene015649.t1.exon1;Parent=MS.gene015649.t1
chr4.4 CDS 1907037 1908299 1907037 ID=cds.MS.gene015649.t1;Parent=MS.gene015649.t1
Gene Sequence

>MS.gene015649

ATGGGGTGTAATTCAAGGTCGCAAAGAGAAACTCGTTCGCGGGTCATCATCTTCGATTATCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGAAGTTATGAGGGAACGTGTTGAGTTTATTCAGAAATTAGGGTTAACGATTGATGATATAAATCAGTATCCTTTGATTTTGGGCTGTAGTGTTCGGAAAAACATGATTCCTGTTTTAGGGTATTTAGAAAAAATTGGGATTTCTAGGTCTAAACTTGGTGAATTTATTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGACTTGATGTGGAGAAAGATGATATTGGATTTGTGTTGCAAAAATATCCTCAACTTTTAGGGTTTAAACTTGAAGGTACTATGAGTACTTCAGTAGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTTTTGTTGATTACTTGGTTAATTTAGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATTTACTTGGCTATGATCTTGAAGAGACTGTGAAACCTAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTTTGCCTTCGGTTATTGCTCAGTATCCGCAGATTATTGGGTTGCCTCTTAAGGCTAAATTGTCTTCCCAACAATATTTTTTCAGTTTGAAGCTGAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCATCAAAATGTGATTATGAAACCGGTTGAGTTTTTACTTGGTAGGGCAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGTCCTCAATTGATTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTATTACTTCTTCAAAAGTGAGATGGGGAGGCCTGTAAAAGAGCTTGTGGAGTTTCCAGAATACTTCACTTATAGTTTGGAATCAAGAATTAAACCTAGATACCAGAGGCTTAAGAGCAAGGGGATAAAATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCAATTATATTGAAACCGAAAGTATAGGTCCTTCATTCCGTATTGGTGGGAAATTAGAGCTACCAGGAAACGACATAGTTTTCAGATGA
Protein sequence

>MS.gene015649.t1

MGCNSRSQRETRSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFIQKLGLTIDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPQLLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPFVDYLVNLGLPKKILARMLEKRAYLLGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLIALRVELMKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFRIGGKLELPGNDIVFR