Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015730.t1 | XP_003630836.1 | 99.6 | 683 | 1 | 1 | 1 | 681 | 1 | 683 | 0.00E+00 | 1147.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015730.t1 | Q9LS42 | 74.2 | 691 | 166 | 3 | 1 | 681 | 1 | 689 | 7.0e-252 | 871.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015730.t1 | G7L912 | 99.6 | 683 | 1 | 1 | 1 | 681 | 1 | 683 | 0.0e+00 | 1147.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene015730 | MS.gene82345 | PPI |
MS.gene015730 | MS.gene56498 | PPI |
MS.gene015730 | MS.gene006825 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015730.t1 | MTR_8g103950 | 99.561 | 683 | 1 | 1 | 1 | 681 | 1 | 683 | 0.0 | 1370 |
MS.gene015730.t1 | MTR_8g103950 | 99.476 | 572 | 1 | 1 | 1 | 570 | 1 | 572 | 0.0 | 1131 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015730.t1 | AT3G18480 | 79.595 | 691 | 129 | 3 | 1 | 681 | 1 | 689 | 0.0 | 1100 |
Find 121 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCCGTCGTCTCCGCTTTC+TGG | 0.108455 | 4.3:+1928216 | MS.gene015730:CDS |
GAAAGTTCCTTTATGATCTT+TGG | 0.215035 | 4.3:-1934800 | None:intergenic |
CGAGCACAAACAATGCTTCT+TGG | 0.272686 | 4.3:+1931093 | MS.gene015730:CDS |
AGGCAGTTGAAGGAGAAAAT+TGG | 0.293467 | 4.3:+1935463 | MS.gene015730:CDS |
TTCAGAGATTAACTTCTCTT+TGG | 0.299122 | 4.3:-1932855 | None:intergenic |
TGCCTTGCTTAAGGGGTATC+AGG | 0.303133 | 4.3:+1929116 | MS.gene015730:CDS |
GATACAAGGAGTTGGGATTC+AGG | 0.303649 | 4.3:+1936440 | MS.gene015730:CDS |
GGCAGTTGAAGGAGAAAATT+GGG | 0.322531 | 4.3:+1935464 | MS.gene015730:CDS |
TGTCAGCTTTGAGTTATCTA+AGG | 0.361924 | 4.3:+1936772 | MS.gene015730:CDS |
CGAGCTTTGATCTTGATCTA+AGG | 0.368854 | 4.3:-1935243 | None:intergenic |
TTGTTTAATGCCTTGCTTAA+GGG | 0.370199 | 4.3:+1929108 | MS.gene015730:CDS |
ATGTTGAGAAAGTGGTTTCC+AGG | 0.371057 | 4.3:+1935566 | MS.gene015730:CDS |
ACAAACAATGCTTCTTGGTT+TGG | 0.373165 | 4.3:+1931098 | MS.gene015730:CDS |
TTCTTCACGTTCATTTGATA+AGG | 0.377695 | 4.3:-1932909 | None:intergenic |
AACTTCATCCATCAGGAGAT+TGG | 0.381423 | 4.3:-1931067 | None:intergenic |
TCCTTTATGATCTTTGGAAC+TGG | 0.384238 | 4.3:-1934794 | None:intergenic |
TTTGTTTAATGCCTTGCTTA+AGG | 0.387765 | 4.3:+1929107 | MS.gene015730:CDS |
CTTTCTCAACATTATAGTCT+TGG | 0.389435 | 4.3:-1935555 | None:intergenic |
TATAAAAGAATGCAAAAGTT+CGG | 0.398780 | 4.3:-1936707 | None:intergenic |
GGCAATGAAGAAAGAGCTTC+AGG | 0.400714 | 4.3:+1933967 | MS.gene015730:CDS |
CACTGCAATGCTTAATGAAA+AGG | 0.405025 | 4.3:+1932955 | MS.gene015730:CDS |
AAGTAGGCAATTAGAGCAAC+AGG | 0.405707 | 4.3:+1930371 | MS.gene015730:CDS |
GCAGTCAGAGAGATCGATTT+AGG | 0.415746 | 4.3:+1935282 | MS.gene015730:CDS |
ATAAAAGAATGCAAAAGTTC+GGG | 0.416558 | 4.3:-1936706 | None:intergenic |
TACAATCGGGTTGCATGTCT+TGG | 0.416848 | 4.3:+1936728 | MS.gene015730:CDS |
CAACACCTTCTTAGAACCCC+TGG | 0.427405 | 4.3:-1935584 | None:intergenic |
GGGATCTATCAGAGGCTAAT+CGG | 0.429590 | 4.3:+1934833 | MS.gene015730:CDS |
AGACTATAATGTTGAGAAAG+TGG | 0.435617 | 4.3:+1935558 | MS.gene015730:CDS |
CTCTTCAAGTCTTCGTATTG+TGG | 0.446914 | 4.3:-1930346 | None:intergenic |
CTCGTTCAACTTCATCCATC+AGG | 0.450947 | 4.3:-1931074 | None:intergenic |
AGAGAAAGTAAAAGAAATTG+TGG | 0.451660 | 4.3:+1930517 | MS.gene015730:CDS |
ACAGGAAATAAGGCAGTTGA+AGG | 0.452858 | 4.3:+1935453 | MS.gene015730:intron |
AAGGAACTTTCCTTGATGAC+TGG | 0.453666 | 4.3:+1934812 | MS.gene015730:CDS |
TCCAGTTCCAAAGATCATAA+AGG | 0.457304 | 4.3:+1934793 | MS.gene015730:CDS |
ATTCAATTGAGGCTGAAGAC+TGG | 0.460183 | 4.3:+1934156 | MS.gene015730:CDS |
TTTCTTTAGCACTCTGCAGC+TGG | 0.464259 | 4.3:-1930766 | None:intergenic |
AAAGCGGAGACGACGGAGAT+CGG | 0.467188 | 4.3:-1928212 | None:intergenic |
GCAGATAATGTTAAACTGTA+CGG | 0.472098 | 4.3:+1935517 | MS.gene015730:CDS |
GTCGTCTCCGCTTTCTGGAA+AGG | 0.473696 | 4.3:+1928221 | MS.gene015730:CDS |
GCAAGAGCTGGATAAGGATC+TGG | 0.474947 | 4.3:-1929219 | None:intergenic |
TTTGAACTCCGTGCTCAGTC+TGG | 0.477470 | 4.3:+1930836 | MS.gene015730:CDS |
ATACAAGGAGTTGGGATTCA+GGG | 0.479433 | 4.3:+1936441 | MS.gene015730:CDS |
GATCAAAGATACAAGGAGTT+GGG | 0.483830 | 4.3:+1936433 | MS.gene015730:CDS |
GAGCACGGAGTTCAAACAAC+TGG | 0.486238 | 4.3:-1930829 | None:intergenic |
GGTTTCCAGGGGTTCTAAGA+AGG | 0.490914 | 4.3:+1935579 | MS.gene015730:CDS |
AACTCACTTGAAGAATCAAC+AGG | 0.495755 | 4.3:+1930323 | MS.gene015730:CDS |
TGTTTAATGCCTTGCTTAAG+GGG | 0.498851 | 4.3:+1929109 | MS.gene015730:CDS |
AGATCAAAGATACAAGGAGT+TGG | 0.502305 | 4.3:+1936432 | MS.gene015730:CDS |
CAGATAATGTTAAACTGTAC+GGG | 0.503919 | 4.3:+1935518 | MS.gene015730:CDS |
AAACAAACTTGACTTATCCT+CGG | 0.505879 | 4.3:-1929091 | None:intergenic |
CCGAGCTAGAATCTGAGAAC+CGG | 0.509206 | 4.3:+1930262 | MS.gene015730:CDS |
ACTGAGGCAAGAGCTGGATA+AGG | 0.510141 | 4.3:-1929225 | None:intergenic |
CTGATAGATCCCAGTCATCA+AGG | 0.512241 | 4.3:-1934822 | None:intergenic |
AGCAGCGGACGATTTCTTCT+CGG | 0.512425 | 4.3:+1936478 | MS.gene015730:CDS |
AACAAACTTGACTTATCCTC+GGG | 0.514878 | 4.3:-1929090 | None:intergenic |
GCTCATCTCCTCCCCACTTG+TGG | 0.514899 | 4.3:-1934186 | None:intergenic |
TTCAATTGAGGCTGAAGACT+GGG | 0.516424 | 4.3:+1934157 | MS.gene015730:CDS |
TCCCTCTCCGATCCACTTGG+CGG | 0.520914 | 4.3:-1928176 | None:intergenic |
CCGGTTCTCAGATTCTAGCT+CGG | 0.521831 | 4.3:-1930262 | None:intergenic |
AGCTGACATTCTGTAGAGAC+AGG | 0.526667 | 4.3:-1936757 | None:intergenic |
ACACGAGCTAACACAGTTGA+AGG | 0.534521 | 4.3:+1934250 | MS.gene015730:CDS |
AGGAACTTTCCTTGATGACT+GGG | 0.534962 | 4.3:+1934813 | MS.gene015730:CDS |
TGTTGAGAAAGTGGTTTCCA+GGG | 0.535552 | 4.3:+1935567 | MS.gene015730:CDS |
GCTTAAGGGGTATCAGGAAG+AGG | 0.536160 | 4.3:+1929122 | MS.gene015730:CDS |
GGCTCAGATGAAACACTGGC+TGG | 0.536356 | 4.3:+1936877 | MS.gene015730:CDS |
GATATAGGAGGCTTCTATTG+TGG | 0.539708 | 4.3:+1933946 | MS.gene015730:intron |
TTGCAGGGAACAATTACTAC+AGG | 0.540685 | 4.3:+1930742 | MS.gene015730:intron |
GACTGGGAAGTGGCCACAAG+TGG | 0.542533 | 4.3:+1934173 | MS.gene015730:CDS |
GTGTCCCTCTCCGATCCACT+TGG | 0.542837 | 4.3:-1928179 | None:intergenic |
CAGTCCACGTGGAAGATCAA+TGG | 0.546836 | 4.3:-1936908 | None:intergenic |
GGTGGCAGAACTTTCAGCTA+AGG | 0.546982 | 4.3:+1934592 | MS.gene015730:CDS |
GAAGACTTGAAGAGCGAAGT+AGG | 0.548247 | 4.3:+1930355 | MS.gene015730:CDS |
ACAGCAACTGAGGCAAGAGC+TGG | 0.549391 | 4.3:-1929231 | None:intergenic |
GGAGTCTCCGCCAAGTGGAT+CGG | 0.552009 | 4.3:+1928169 | MS.gene015730:CDS |
TATGCAGAAGATCTTGAAAG+TGG | 0.552427 | 4.3:+1935702 | MS.gene015730:CDS |
AGTGGGTTATAATTCAATTG+AGG | 0.558132 | 4.3:+1934145 | MS.gene015730:CDS |
AATCAGACCTTTCCAGAAAG+CGG | 0.559556 | 4.3:-1928228 | None:intergenic |
ATCTTCCACGTGGACTGTAG+TGG | 0.562365 | 4.3:+1936914 | MS.gene015730:CDS |
ATCATCAGAATATGGATCAA+AGG | 0.565231 | 4.3:+1935216 | MS.gene015730:intron |
GTTGGAAGATGATATATCCA+AGG | 0.569133 | 4.3:+1934643 | MS.gene015730:CDS |
TCCGCCAAGTGGATCGGAGA+GGG | 0.574061 | 4.3:+1928175 | MS.gene015730:CDS |
GACGACGGAGATCGGAGAGT+TGG | 0.574510 | 4.3:-1928204 | None:intergenic |
ACTCGAAACAGCCGAGCAGA+AGG | 0.575671 | 4.3:+1934571 | MS.gene015730:CDS |
GGAAGTGGCCACAAGTGGGG+AGG | 0.576452 | 4.3:+1934178 | MS.gene015730:CDS |
TCTTGGTTTGGAGAGAGAGA+AGG | 0.577076 | 4.3:+1931110 | MS.gene015730:CDS |
TGAGGCTGAAGACTGGGAAG+TGG | 0.578334 | 4.3:+1934163 | MS.gene015730:CDS |
CTGGGAAGTGGCCACAAGTG+GGG | 0.580493 | 4.3:+1934175 | MS.gene015730:CDS |
TTTGATTACCAGACTGAGCA+CGG | 0.583328 | 4.3:-1930844 | None:intergenic |
TGGGGAGGAGATGAGCAAGA+TGG | 0.591522 | 4.3:+1934193 | MS.gene015730:CDS |
GGAAAGAGATCAAAGATACA+AGG | 0.597550 | 4.3:+1936426 | MS.gene015730:intron |
GAAAATGAAAGTTGAGCTTG+AGG | 0.599598 | 4.3:+1930284 | MS.gene015730:CDS |
AAGATTCTGAAACTAAGAAG+AGG | 0.601242 | 4.3:+1931780 | MS.gene015730:CDS |
CGAAACAGCCGAGCAGAAGG+TGG | 0.605027 | 4.3:+1934574 | MS.gene015730:CDS |
TGGTCATACATTCAGGCAGT+GGG | 0.605843 | 4.3:+1934128 | MS.gene015730:intron |
AGCAGAGGCCAATCTCCTGA+TGG | 0.608030 | 4.3:+1931059 | MS.gene015730:CDS |
AAGTTCTGCCACCTTCTGCT+CGG | 0.610438 | 4.3:-1934582 | None:intergenic |
GAGGGCAGCTAAGCAAGCAG+AGG | 0.612345 | 4.3:+1931044 | MS.gene015730:CDS |
TTTCCAGAAAGCGGAGACGA+CGG | 0.616138 | 4.3:-1928219 | None:intergenic |
AAATCTGTGTTAGATGAACA+AGG | 0.616404 | 4.3:+1928901 | MS.gene015730:CDS |
TAATCGGAGTGAGGTGTCTG+AGG | 0.620394 | 4.3:+1934849 | MS.gene015730:CDS |
TCATGGCTCAGATGAAACAC+TGG | 0.624075 | 4.3:+1936873 | MS.gene015730:CDS |
GCTTGAGGAATTTAGAACAG+AGG | 0.635432 | 4.3:+1930299 | MS.gene015730:CDS |
GTTAATCTCTGAATTGAACA+TGG | 0.637889 | 4.3:+1932865 | MS.gene015730:CDS |
ACTGGGAAGTGGCCACAAGT+GGG | 0.638410 | 4.3:+1934174 | MS.gene015730:CDS |
GTTGAGAAAGTGGTTTCCAG+GGG | 0.643846 | 4.3:+1935568 | MS.gene015730:CDS |
GACAGAATCACACTCAGCAG+CGG | 0.644787 | 4.3:+1936463 | MS.gene015730:CDS |
TGATGACTGGGATCTATCAG+AGG | 0.646009 | 4.3:+1934825 | MS.gene015730:CDS |
TTCCTGATACCCCTTAAGCA+AGG | 0.649337 | 4.3:-1929118 | None:intergenic |
AAAATGGAGTCTCCGCCAAG+TGG | 0.659317 | 4.3:+1928164 | None:intergenic |
ACGCTTGAGAGAGACAGAAG+AGG | 0.662085 | 4.3:+1935307 | MS.gene015730:CDS |
ATCAGAGGCTAATCGGAGTG+AGG | 0.670414 | 4.3:+1934840 | MS.gene015730:CDS |
GCTGGAACTCACAGCAACTG+AGG | 0.677059 | 4.3:-1929241 | None:intergenic |
TAAGCATCGCAATCTAGCAG+AGG | 0.677217 | 4.3:+1930544 | MS.gene015730:CDS |
TTTCAAGAAAGCTTCACCCG+AGG | 0.686730 | 4.3:+1929074 | MS.gene015730:CDS |
AATCTGTGTTAGATGAACAA+GGG | 0.690995 | 4.3:+1928902 | MS.gene015730:CDS |
GCAGTTGAAGGAGAAAATTG+GGG | 0.693185 | 4.3:+1935465 | MS.gene015730:CDS |
CTCCGCCAAGTGGATCGGAG+AGG | 0.701318 | 4.3:+1928174 | MS.gene015730:CDS |
GAAAATTGGGGTATTAACAG+CGG | 0.709114 | 4.3:+1935477 | MS.gene015730:CDS |
AGAACCATTGATCTTCCACG+TGG | 0.765127 | 4.3:+1936904 | MS.gene015730:CDS |
AAAATACAAGAAGATATACG+AGG | 0.768531 | 4.3:+1935746 | MS.gene015730:CDS |
TATACCCACTACAGTCCACG+TGG | 0.774860 | 4.3:-1936919 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 1928167 | 1936933 | 1928167 | ID=MS.gene015730 |
chr4.3 | mRNA | 1928167 | 1936933 | 1928167 | ID=MS.gene015730.t1;Parent=MS.gene015730 |
chr4.3 | exon | 1928167 | 1928242 | 1928167 | ID=MS.gene015730.t1.exon1;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1928167 | 1928242 | 1928167 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1928881 | 1928991 | 1928881 | ID=MS.gene015730.t1.exon2;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1928881 | 1928991 | 1928881 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1929073 | 1929251 | 1929073 | ID=MS.gene015730.t1.exon3;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1929073 | 1929251 | 1929073 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1930243 | 1930392 | 1930243 | ID=MS.gene015730.t1.exon4;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1930243 | 1930392 | 1930243 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1930512 | 1930600 | 1930512 | ID=MS.gene015730.t1.exon5;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1930512 | 1930600 | 1930512 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1930748 | 1930857 | 1930748 | ID=MS.gene015730.t1.exon6;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1930748 | 1930857 | 1930748 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1931037 | 1931131 | 1931037 | ID=MS.gene015730.t1.exon7;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1931037 | 1931131 | 1931037 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1931746 | 1931801 | 1931746 | ID=MS.gene015730.t1.exon8;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1931746 | 1931801 | 1931746 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1932811 | 1932976 | 1932811 | ID=MS.gene015730.t1.exon9;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1932811 | 1932976 | 1932811 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1933953 | 1934045 | 1933953 | ID=MS.gene015730.t1.exon10;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1933953 | 1934045 | 1933953 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1934143 | 1934271 | 1934143 | ID=MS.gene015730.t1.exon11;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1934143 | 1934271 | 1934143 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1934545 | 1934664 | 1934545 | ID=MS.gene015730.t1.exon12;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1934545 | 1934664 | 1934545 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1934784 | 1934870 | 1934784 | ID=MS.gene015730.t1.exon13;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1934784 | 1934870 | 1934784 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1935224 | 1935328 | 1935224 | ID=MS.gene015730.t1.exon14;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1935224 | 1935328 | 1935224 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1935457 | 1935600 | 1935457 | ID=MS.gene015730.t1.exon15;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1935457 | 1935600 | 1935457 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1935702 | 1935803 | 1935702 | ID=MS.gene015730.t1.exon16;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1935702 | 1935803 | 1935702 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1936427 | 1936506 | 1936427 | ID=MS.gene015730.t1.exon17;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1936427 | 1936506 | 1936427 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1936701 | 1936793 | 1936701 | ID=MS.gene015730.t1.exon18;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1936701 | 1936793 | 1936701 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
chr4.3 | exon | 1936873 | 1936933 | 1936873 | ID=MS.gene015730.t1.exon19;Parent=MS.gene015730.t1 |
chr4.3 | CDS | 1936873 | 1936933 | 1936873 | ID=cds.MS.gene015730.t1;Parent=MS.gene015730.t1 |
Gene Sequence |
Protein sequence |