Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016202.t1 | XP_003588985.1 | 94.4 | 250 | 14 | 0 | 112 | 361 | 31 | 280 | 3.50E-132 | 481.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016202.t1 | G7I9X5 | 94.4 | 250 | 14 | 0 | 112 | 361 | 31 | 280 | 2.5e-132 | 481.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047175 | MS.gene016202 | PPI |
| MS.gene002071 | MS.gene016202 | PPI |
| MS.gene072034 | MS.gene016202 | PPI |
| MS.gene016202 | MS.gene00645 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016202.t1 | MTR_1g016080 | 94.915 | 236 | 12 | 0 | 126 | 361 | 45 | 280 | 1.37e-156 | 441 |
| MS.gene016202.t1 | MTR_3g104420 | 67.315 | 257 | 84 | 0 | 105 | 361 | 16 | 272 | 8.85e-129 | 370 |
| MS.gene016202.t1 | MTR_2g006770 | 43.404 | 235 | 133 | 0 | 119 | 353 | 17 | 251 | 3.61e-65 | 208 |
| MS.gene016202.t1 | MTR_8g089715 | 40.517 | 232 | 135 | 1 | 120 | 348 | 15 | 246 | 8.18e-62 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016202.t1 | AT5G11870 | 54.694 | 245 | 109 | 2 | 117 | 360 | 26 | 269 | 1.21e-97 | 291 |
| MS.gene016202.t1 | AT5G11870 | 54.622 | 238 | 106 | 2 | 117 | 353 | 26 | 262 | 4.69e-94 | 281 |
| MS.gene016202.t1 | AT1G71190 | 42.105 | 247 | 142 | 1 | 113 | 358 | 11 | 257 | 3.50e-60 | 195 |
| MS.gene016202.t1 | AT1G71190 | 35.366 | 246 | 119 | 1 | 113 | 358 | 11 | 216 | 2.30e-47 | 161 |
Find 82 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAGGAGAGCGTGGAATTT+TGG | 0.177744 | 1.2:-6429095 | None:intergenic |
| CTATTCTATGCTGGAATTAT+AGG | 0.182046 | 1.2:+6429446 | MS.gene016202:CDS |
| TATTCTATGCTGGAATTATA+GGG | 0.258418 | 1.2:+6429447 | MS.gene016202:CDS |
| CGTTATCAGCGGGCACTCTT+TGG | 0.268066 | 1.2:+6430897 | MS.gene016202:CDS |
| GCTGACTTGCGCAATCTTCT+TGG | 0.276021 | 1.2:+6429130 | MS.gene016202:CDS |
| GGAATTATAGGGGTAGCTTT+TGG | 0.299826 | 1.2:+6429458 | MS.gene016202:CDS |
| ACTATACTCACTCAAGATAT+TGG | 0.300455 | 1.2:+6430724 | MS.gene016202:CDS |
| GCAGGAGCAGCAACAGTATA+TGG | 0.301758 | 1.2:-6426737 | None:intergenic |
| ACAGGGAGCGTAAGTTTAAA+AGG | 0.336107 | 1.2:+6430971 | MS.gene016202:CDS |
| GTGATCACATTCACCGTGTT+GGG | 0.344613 | 1.2:-6429244 | None:intergenic |
| GCAGAACTTATGATGATATT+CGG | 0.357442 | 1.2:+6430634 | MS.gene016202:intron |
| GGTTTAGTTCTTACTCTTGA+AGG | 0.365060 | 1.2:+6429298 | MS.gene016202:CDS |
| AGAGAATTGGCCAGCGGATT+GGG | 0.369422 | 1.2:+6430434 | MS.gene016202:CDS |
| AGTCTTGTGGGACACTTTGC+CGG | 0.373549 | 1.2:+6429517 | MS.gene016202:CDS |
| CACAAGACTCTATCGTTATC+AGG | 0.387981 | 1.2:-6429503 | None:intergenic |
| AGTTTGGTTATTGAGAGAAT+TGG | 0.409279 | 1.2:+6430421 | MS.gene016202:CDS |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 1.2:+6424903 | MS.gene016202:CDS |
| GAATATGACATTTGGTGAAC+AGG | 0.417124 | 1.2:+6424859 | MS.gene016202:CDS |
| TTAGTGTGATGCTCATCTAC+AGG | 0.457946 | 1.2:+6430953 | MS.gene016202:CDS |
| TTGCCTACGCGTTCTCCTAC+AGG | 0.459407 | 1.2:+6426834 | MS.gene016202:CDS |
| GAGAGAATTGGCCAGCGGAT+TGG | 0.461721 | 1.2:+6430433 | MS.gene016202:CDS |
| TAGCTAAAGGAAGAATGAAC+TGG | 0.473251 | 1.2:-6430671 | None:intergenic |
| TTAGTTCTCAAGCAGAGATA+TGG | 0.474235 | 1.2:+6429414 | MS.gene016202:intron |
| GGTTATGAGAATATGACATT+TGG | 0.482364 | 1.2:+6424851 | MS.gene016202:CDS |
| TTCATAAACAACACAAGTAA+AGG | 0.483567 | 1.2:-6430488 | None:intergenic |
| TGCTGATGTCGAGCATCAGC+AGG | 0.498672 | 1.2:-6426755 | None:intergenic |
| TTTGGGAGAGAAGAGAAAGA+AGG | 0.500392 | 1.2:-6429077 | None:intergenic |
| GATTGCGCAAGTCAGCGAAT+TGG | 0.503286 | 1.2:-6429123 | None:intergenic |
| TTACTTGTGTTGTTTATGAA+CGG | 0.506820 | 1.2:+6430491 | MS.gene016202:CDS |
| TATCGTTATCAGGCTTCAAA+TGG | 0.512826 | 1.2:-6429493 | None:intergenic |
| TGATAACGATAGAGTCTTGT+GGG | 0.513805 | 1.2:+6429505 | MS.gene016202:CDS |
| TGTGATCACATTCACCGTGT+TGG | 0.514498 | 1.2:-6429245 | None:intergenic |
| TATGGACATGGAGCAGGAGC+AGG | 0.514515 | 1.2:-6426719 | None:intergenic |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 1.2:+6424908 | MS.gene016202:CDS |
| GGAGCAGGAGCAGGCTGATG+TGG | 0.516780 | 1.2:-6426710 | None:intergenic |
| CTCAAGCAGAGATATGGTCT+TGG | 0.517070 | 1.2:+6429420 | MS.gene016202:CDS |
| CCGAGGTGTCGAGGTGGTAG+AGG | 0.522389 | 1.2:-6426784 | None:intergenic |
| ATTGCAGCGTATGGAGGAGC+AGG | 0.525892 | 1.2:-6426686 | None:intergenic |
| CACAAGTAAAGGCTGCGAAA+AGG | 0.526322 | 1.2:-6430477 | None:intergenic |
| ACAGTATATGGACATGGAGC+AGG | 0.531075 | 1.2:-6426725 | None:intergenic |
| TTTGGAACACTTGTGCTTAG+CGG | 0.540650 | 1.2:+6430915 | MS.gene016202:CDS |
| AAGTAAAGGCTGCGAAAAGG+AGG | 0.541078 | 1.2:-6430474 | None:intergenic |
| TGGTGGTGAGTAGGAGAGCG+TGG | 0.543307 | 1.2:-6429103 | None:intergenic |
| TGCGCAAGTCAGCGAATTGG+TGG | 0.545924 | 1.2:-6429120 | None:intergenic |
| GCAGCTGCTGCAATAGCTAA+AGG | 0.548300 | 1.2:-6430684 | None:intergenic |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.551388 | 1.2:+6424830 | None:intergenic |
| TCTTGGATACTATTCTATGC+TGG | 0.553325 | 1.2:+6429437 | MS.gene016202:CDS |
| TCAGCGAATTGGTGGTGAGT+AGG | 0.573822 | 1.2:-6429112 | None:intergenic |
| GCAAATAACTACGTTATCAG+CGG | 0.576718 | 1.2:+6430886 | MS.gene016202:CDS |
| TGATCACATTCACCGTGTTG+GGG | 0.577459 | 1.2:-6429243 | None:intergenic |
| CAAATAACTACGTTATCAGC+GGG | 0.577528 | 1.2:+6430887 | MS.gene016202:CDS |
| TAGTGTGATGCTCATCTACA+GGG | 0.584946 | 1.2:+6430954 | MS.gene016202:CDS |
| TACAACACATCCCAATCCGC+TGG | 0.586145 | 1.2:-6430444 | None:intergenic |
| GGTGTTCCTCCGAGGTGTCG+AGG | 0.594651 | 1.2:-6426793 | None:intergenic |
| AACGCGTAGGCAACAGCTAG+AGG | 0.604172 | 1.2:-6426824 | None:intergenic |
| TTAGTTCTTACTCTTGAAGG+AGG | 0.606045 | 1.2:+6429301 | MS.gene016202:CDS |
| CTGATAACGATAGAGTCTTG+TGG | 0.611073 | 1.2:+6429504 | MS.gene016202:CDS |
| TGATGTGGAATTGCAGCGTA+TGG | 0.612637 | 1.2:-6426695 | None:intergenic |
| CAGCGCGGCATGCTTCCTGT+AGG | 0.615727 | 1.2:-6426849 | None:intergenic |
| CTTGAGTGAGTATAGTCAGA+GGG | 0.627291 | 1.2:-6430717 | None:intergenic |
| AGGCAACAGCTAGAGGCTGA+AGG | 0.632611 | 1.2:-6426817 | None:intergenic |
| AGTAAAGGCTGCGAAAAGGA+GGG | 0.633786 | 1.2:-6430473 | None:intergenic |
| ATTCTATGCTGGAATTATAG+GGG | 0.637655 | 1.2:+6429448 | MS.gene016202:CDS |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 1.2:+6424904 | MS.gene016202:CDS |
| TGATAACGTAGTTATTTGCA+CGG | 0.644610 | 1.2:-6430882 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 1.2:+6424902 | MS.gene016202:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.649765 | 1.2:+6424888 | MS.gene016202:CDS |
| GCAGCAACAGTATATGGACA+TGG | 0.650396 | 1.2:-6426731 | None:intergenic |
| CCTCTACCACCTCGACACCT+CGG | 0.650507 | 1.2:+6426784 | MS.gene016202:CDS |
| ACTTGGGGCTGGAGATGCTG+AGG | 0.650883 | 1.2:+6424919 | MS.gene016202:CDS |
| CTGAAGGTGGTGTTCCTCCG+AGG | 0.657668 | 1.2:-6426801 | None:intergenic |
| CAACAGCTAGAGGCTGAAGG+TGG | 0.666922 | 1.2:-6426814 | None:intergenic |
| TCTTGAGTGAGTATAGTCAG+AGG | 0.667258 | 1.2:-6430718 | None:intergenic |
| TTTCACAGGTGTCCCCAACA+CGG | 0.676395 | 1.2:+6429231 | MS.gene016202:intron |
| GCACTAATGGCAGATGATGG+TGG | 0.681415 | 1.2:+6430378 | MS.gene016202:intron |
| TGTGGAATTGCAGCGTATGG+AGG | 0.686228 | 1.2:-6426692 | None:intergenic |
| GTTCCTCCGAGGTGTCGAGG+TGG | 0.691424 | 1.2:-6426790 | None:intergenic |
| CTACCACCTCGACACCTCGG+AGG | 0.710057 | 1.2:+6426787 | MS.gene016202:CDS |
| AACCAAACTAGAGAAAAGTG+AGG | 0.710937 | 1.2:-6430407 | None:intergenic |
| TTATTGAGAGAATTGGCCAG+CGG | 0.722249 | 1.2:+6430428 | MS.gene016202:CDS |
| CTTCCTGTAGGAGAACGCGT+AGG | 0.739077 | 1.2:-6426837 | None:intergenic |
| TCAACATCTAATACTCAGCG+CGG | 0.743894 | 1.2:-6426864 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 6424833 | 6431792 | 6424833 | ID=MS.gene016202 |
| chr1.2 | mRNA | 6424833 | 6431792 | 6424833 | ID=MS.gene016202.t1;Parent=MS.gene016202 |
| chr1.2 | exon | 6424833 | 6424980 | 6424833 | ID=MS.gene016202.t1.exon1;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6424833 | 6424980 | 6424833 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| chr1.2 | exon | 6426684 | 6426872 | 6426684 | ID=MS.gene016202.t1.exon2;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6426684 | 6426872 | 6426684 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| chr1.2 | exon | 6429056 | 6429151 | 6429056 | ID=MS.gene016202.t1.exon3;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6429056 | 6429151 | 6429056 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| chr1.2 | exon | 6429239 | 6429338 | 6429239 | ID=MS.gene016202.t1.exon4;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6429239 | 6429338 | 6429239 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| chr1.2 | exon | 6429418 | 6429538 | 6429418 | ID=MS.gene016202.t1.exon5;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6429418 | 6429538 | 6429418 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| chr1.2 | exon | 6430391 | 6430512 | 6430391 | ID=MS.gene016202.t1.exon6;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6430391 | 6430512 | 6430391 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| chr1.2 | exon | 6430638 | 6430759 | 6430638 | ID=MS.gene016202.t1.exon7;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6430638 | 6430759 | 6430638 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| chr1.2 | exon | 6430833 | 6430992 | 6430833 | ID=MS.gene016202.t1.exon8;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6430833 | 6430992 | 6430833 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| chr1.2 | exon | 6431765 | 6431792 | 6431765 | ID=MS.gene016202.t1.exon9;Parent=MS.gene016202.t1 |
| chr1.2 | CDS | 6431765 | 6431792 | 6431765 | ID=cds.MS.gene016202.t1;Parent=MS.gene016202.t1 |
| Gene Sequence |
| Protein sequence |