Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018065.t1 | XP_017418550.1 | 94.2 | 498 | 28 | 1 | 1 | 497 | 1 | 498 | 2.90E-262 | 914.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018065.t1 | Q9M8J9 | 75.0 | 372 | 93 | 0 | 35 | 406 | 30 | 401 | 8.7e-167 | 588.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018065.t1 | A0A371GAS9 | 89.1 | 497 | 46 | 2 | 1 | 497 | 1 | 489 | 2.1e-254 | 887.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018065 | MS.gene88846 | PPI |
| MS.gene006074 | MS.gene018065 | PPI |
| MS.gene33918 | MS.gene018065 | PPI |
| MS.gene60766 | MS.gene018065 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018065.t1 | MTR_7g094490 | 99.754 | 406 | 1 | 0 | 1 | 406 | 1 | 406 | 0.0 | 845 |
| MS.gene018065.t1 | MTR_1g072650 | 90.541 | 370 | 35 | 0 | 37 | 406 | 41 | 410 | 0.0 | 715 |
| MS.gene018065.t1 | MTR_5g087500 | 57.990 | 388 | 146 | 6 | 29 | 406 | 23 | 403 | 1.30e-156 | 451 |
| MS.gene018065.t1 | MTR_5g087500 | 61.934 | 331 | 117 | 5 | 29 | 355 | 23 | 348 | 1.62e-145 | 421 |
| MS.gene018065.t1 | MTR_7g086500 | 57.632 | 380 | 153 | 4 | 32 | 406 | 13 | 389 | 4.39e-145 | 422 |
| MS.gene018065.t1 | MTR_5g087500 | 61.398 | 329 | 119 | 4 | 29 | 353 | 23 | 347 | 4.83e-145 | 420 |
| MS.gene018065.t1 | MTR_7g086500 | 59.938 | 322 | 123 | 3 | 32 | 350 | 13 | 331 | 1.82e-130 | 382 |
| MS.gene018065.t1 | MTR_4g009630 | 60.335 | 179 | 71 | 0 | 35 | 213 | 23 | 201 | 5.17e-74 | 238 |
| MS.gene018065.t1 | MTR_4g009630 | 60.335 | 179 | 71 | 0 | 35 | 213 | 23 | 201 | 9.07e-73 | 236 |
| MS.gene018065.t1 | MTR_7g094500 | 100.000 | 92 | 0 | 0 | 406 | 497 | 2 | 93 | 2.25e-60 | 193 |
| MS.gene018065.t1 | MTR_7g104700 | 98.913 | 92 | 1 | 0 | 406 | 497 | 2 | 93 | 5.56e-60 | 192 |
| MS.gene018065.t1 | MTR_3g069000 | 52.973 | 185 | 87 | 0 | 200 | 384 | 51 | 235 | 3.52e-59 | 197 |
| MS.gene018065.t1 | MTR_1g104870 | 31.288 | 163 | 92 | 3 | 187 | 344 | 517 | 664 | 1.74e-16 | 82.8 |
| MS.gene018065.t1 | MTR_5g005940 | 31.875 | 160 | 95 | 2 | 187 | 344 | 514 | 661 | 2.24e-16 | 82.4 |
| MS.gene018065.t1 | MTR_7g094910 | 27.389 | 157 | 97 | 3 | 189 | 344 | 511 | 651 | 3.93e-14 | 75.5 |
| MS.gene018065.t1 | MTR_7g094900 | 27.389 | 157 | 97 | 3 | 189 | 344 | 530 | 670 | 3.97e-14 | 75.5 |
| MS.gene018065.t1 | MTR_3g088660 | 27.568 | 185 | 113 | 5 | 201 | 379 | 74 | 243 | 1.30e-12 | 68.2 |
| MS.gene018065.t1 | MTR_3g061090 | 27.815 | 151 | 94 | 3 | 197 | 345 | 83 | 220 | 1.95e-11 | 64.7 |
| MS.gene018065.t1 | MTR_1g029850 | 23.765 | 324 | 201 | 8 | 31 | 344 | 4 | 291 | 2.89e-11 | 65.1 |
| MS.gene018065.t1 | MTR_3g061090 | 27.815 | 151 | 94 | 3 | 197 | 345 | 155 | 292 | 3.04e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018065.t1 | AT3G06190 | 72.250 | 400 | 111 | 0 | 7 | 406 | 2 | 401 | 0.0 | 619 |
| MS.gene018065.t1 | AT5G19000 | 72.776 | 371 | 101 | 0 | 36 | 406 | 32 | 402 | 0.0 | 587 |
| MS.gene018065.t1 | AT5G19000 | 72.776 | 371 | 101 | 0 | 36 | 406 | 32 | 402 | 0.0 | 587 |
| MS.gene018065.t1 | AT5G19000 | 66.502 | 406 | 101 | 1 | 36 | 406 | 32 | 437 | 0.0 | 570 |
| MS.gene018065.t1 | AT3G06190 | 72.832 | 346 | 94 | 0 | 7 | 352 | 2 | 347 | 0.0 | 541 |
| MS.gene018065.t1 | AT2G39760 | 63.714 | 350 | 127 | 0 | 29 | 378 | 16 | 365 | 1.49e-170 | 487 |
| MS.gene018065.t1 | AT2G39760 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 5.68e-157 | 450 |
| MS.gene018065.t1 | AT2G39760 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 5.68e-157 | 450 |
| MS.gene018065.t1 | AT2G39760 | 64.286 | 322 | 115 | 0 | 29 | 350 | 16 | 337 | 1.16e-156 | 449 |
| MS.gene018065.t1 | AT3G03740 | 59.259 | 378 | 143 | 4 | 5 | 378 | 18 | 388 | 1.38e-156 | 453 |
| MS.gene018065.t1 | AT3G43700 | 54.756 | 389 | 163 | 6 | 1 | 382 | 1 | 383 | 8.78e-147 | 427 |
| MS.gene018065.t1 | AT5G21010 | 55.412 | 388 | 157 | 5 | 5 | 385 | 1 | 379 | 2.37e-144 | 420 |
| MS.gene018065.t1 | AT3G43700 | 54.972 | 362 | 150 | 6 | 1 | 355 | 1 | 356 | 9.22e-137 | 399 |
| MS.gene018065.t1 | AT3G43700 | 55.742 | 357 | 145 | 6 | 1 | 350 | 1 | 351 | 1.75e-136 | 398 |
| MS.gene018065.t1 | AT3G06190 | 71.094 | 256 | 74 | 0 | 7 | 262 | 2 | 257 | 5.27e-132 | 385 |
| MS.gene018065.t1 | AT3G06190 | 71.094 | 256 | 74 | 0 | 7 | 262 | 2 | 257 | 6.65e-132 | 384 |
| MS.gene018065.t1 | AT3G06190 | 69.231 | 260 | 79 | 1 | 7 | 265 | 2 | 261 | 2.50e-128 | 375 |
| MS.gene018065.t1 | AT1G03330 | 92.391 | 92 | 7 | 0 | 406 | 497 | 2 | 93 | 2.96e-56 | 182 |
| MS.gene018065.t1 | AT5G19330 | 28.283 | 198 | 117 | 4 | 187 | 379 | 519 | 696 | 6.60e-18 | 87.4 |
| MS.gene018065.t1 | AT5G13060 | 25.907 | 193 | 125 | 4 | 193 | 384 | 557 | 732 | 3.71e-14 | 75.5 |
Find 131 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAAGGCAATCATCTTTA+AGG | 0.151802 | 7.1:+13430695 | None:intergenic |
| TTTCGGTTGGTGGGTACGAC+TGG | 0.267781 | 7.1:-13431794 | MS.gene018065:CDS |
| AGTTGTAGCCACAGTATTAA+TGG | 0.285707 | 7.1:+13429946 | None:intergenic |
| TCTAACATTGGTCACCAATT+TGG | 0.290090 | 7.1:-13430601 | MS.gene018065:CDS |
| ATTGCAATGGAATATATCTT+TGG | 0.297756 | 7.1:+13430631 | None:intergenic |
| TTTCCAGCAGTTGACCAAAT+TGG | 0.308262 | 7.1:+13430587 | None:intergenic |
| CTTGATGGTAGCGACATAAA+TGG | 0.313292 | 7.1:-13429063 | MS.gene018065:CDS |
| TTACTGGGATGAACACAAAA+TGG | 0.317610 | 7.1:-13430069 | MS.gene018065:CDS |
| TTTGGTCAACTGCTGGAAAA+TGG | 0.327985 | 7.1:-13430583 | MS.gene018065:CDS |
| CCTGACATGCAAGAGCTTAC+TGG | 0.346812 | 7.1:-13430085 | MS.gene018065:CDS |
| CTTTCAAAGGGGATCGGGAT+TGG | 0.349830 | 7.1:-13431840 | MS.gene018065:CDS |
| TCCATCAGGGTAGAAATAAA+TGG | 0.352142 | 7.1:+13431770 | None:intergenic |
| TTCATTGCGCTTGCGAGTGA+TGG | 0.366715 | 7.1:-13431711 | MS.gene018065:CDS |
| TTTCAAAGGGGATCGGGATT+GGG | 0.367398 | 7.1:-13431839 | MS.gene018065:CDS |
| TTTCTCGTATTTCAAAGATT+TGG | 0.367543 | 7.1:-13426757 | MS.gene018065:CDS |
| CGAGCTTGATGTTAAGGTAT+TGG | 0.368384 | 7.1:+13426667 | None:intergenic |
| CCGCGGTATTTCAAGGTATA+AGG | 0.381273 | 7.1:+13431588 | None:intergenic |
| CCAGTAAGCTCTTGCATGTC+AGG | 0.381423 | 7.1:+13430085 | None:intergenic |
| TCCTCAACACTCTTTCCATC+AGG | 0.388296 | 7.1:+13431756 | None:intergenic |
| ATCTGTTCTGACTGAGCTAC+TGG | 0.388739 | 7.1:-13429148 | MS.gene018065:CDS |
| TTTCAAGAGTCCTCTCAAAA+TGG | 0.393526 | 7.1:+13431616 | None:intergenic |
| TGTCTTCAACTTTAATAGAC+TGG | 0.397130 | 7.1:+13430437 | None:intergenic |
| AAAATGGGCAACAACCTTGA+TGG | 0.400210 | 7.1:-13430053 | MS.gene018065:CDS |
| TTGCAATGGAATATATCTTT+GGG | 0.415668 | 7.1:+13430632 | None:intergenic |
| AAAAGCTGGGCTCTGAAAAC+AGG | 0.418885 | 7.1:+13430484 | None:intergenic |
| AAGATGGTTTCGCGGTTTCT+CGG | 0.425427 | 7.1:+13431970 | None:intergenic |
| CTTTCCCACTCTGATCCAAA+AGG | 0.428484 | 7.1:+13431658 | None:intergenic |
| GGCTAGATTTACTGAGCATT+CGG | 0.429590 | 7.1:-13429118 | MS.gene018065:CDS |
| GCCTTTCACTGTTTCTGTGA+TGG | 0.434181 | 7.1:+13431893 | None:intergenic |
| TGCCACAAGGAGAGAAGCCC+GGG | 0.436743 | 7.1:-13424039 | MS.gene018065:CDS |
| TATAAGCCTGAGCCTCTCTA+AGG | 0.439005 | 7.1:+13429997 | None:intergenic |
| ACTCGCTTTCAAAGGGGATC+GGG | 0.445344 | 7.1:-13431845 | MS.gene018065:CDS |
| CTTTCTGTTAATTGTAGTGT+TGG | 0.448249 | 7.1:-13430679 | MS.gene018065:CDS |
| GCCATTTATTTCTACCCTGA+TGG | 0.449168 | 7.1:-13431771 | MS.gene018065:CDS |
| GATGAGGAAGATGGCGATGA+TGG | 0.450032 | 7.1:+13431942 | None:intergenic |
| CATACTACCGCGGTATTTCA+AGG | 0.451447 | 7.1:+13431581 | None:intergenic |
| CGACGAAGTTGTCGCCGGTT+CGG | 0.453320 | 7.1:+13431920 | None:intergenic |
| TCGCACCAGTTCAAGATCAC+TGG | 0.462687 | 7.1:-13431870 | MS.gene018065:CDS |
| TGATGGATTTGAGTACTTGA+AGG | 0.465111 | 7.1:-13429181 | MS.gene018065:CDS |
| TCACCAATTTGGTCAACTGC+TGG | 0.470708 | 7.1:-13430590 | MS.gene018065:CDS |
| TTTGCTTTCAGCTTTCTGTA+AGG | 0.472959 | 7.1:-13424139 | MS.gene018065:intron |
| CTGACATGCAAGAGCTTACT+GGG | 0.474237 | 7.1:-13430084 | MS.gene018065:CDS |
| AATTGGTGACCAATGTTAGA+AGG | 0.476229 | 7.1:+13430604 | None:intergenic |
| TTCGGTTGGTGGGTACGACT+GGG | 0.480343 | 7.1:-13431793 | MS.gene018065:CDS |
| AGTTCAATGTCCACACCTTC+CGG | 0.482532 | 7.1:+13424071 | None:intergenic |
| AGCAGCCGCTAGAAGATGTT+GGG | 0.482623 | 7.1:+13430030 | None:intergenic |
| CTCGTATTTCAAAGATTTGG+TGG | 0.484680 | 7.1:-13426754 | MS.gene018065:CDS |
| GCCATCTTCCTCATCCGAAC+CGG | 0.485420 | 7.1:-13431934 | MS.gene018065:CDS |
| TCATTGCGCTTGCGAGTGAT+GGG | 0.488038 | 7.1:-13431710 | MS.gene018065:CDS |
| TTGATGGTAGCGACATAAAT+GGG | 0.492627 | 7.1:-13429062 | MS.gene018065:CDS |
| TGAGACAGACTGCTTTCAGC+TGG | 0.493739 | 7.1:+13429894 | None:intergenic |
| CACTGGGTACTCGCTTTCAA+AGG | 0.497134 | 7.1:-13431853 | MS.gene018065:CDS |
| ACTGGGTACTCGCTTTCAAA+GGG | 0.502570 | 7.1:-13431852 | MS.gene018065:CDS |
| GGCGATGATGGATTTGAAGA+TGG | 0.510513 | 7.1:+13431954 | None:intergenic |
| TACTCGCTTTCAAAGGGGAT+CGG | 0.513011 | 7.1:-13431846 | MS.gene018065:CDS |
| GTTATGCCTTAGAGAGGCTC+AGG | 0.515843 | 7.1:-13430003 | MS.gene018065:CDS |
| AGTTGTCGCCGGTTCGGATG+AGG | 0.516664 | 7.1:+13431926 | None:intergenic |
| AGTAGCTCAGTCAGAACAGA+TGG | 0.522563 | 7.1:+13429150 | None:intergenic |
| GTCTTCAACTTTAATAGACT+GGG | 0.522594 | 7.1:+13430438 | None:intergenic |
| GCCGGTTCGGATGAGGAAGA+TGG | 0.527058 | 7.1:+13431933 | None:intergenic |
| AGTACCCAGTGATCTTGAAC+TGG | 0.527135 | 7.1:+13431865 | None:intergenic |
| AGGAATGAAGCAATACTTGA+TGG | 0.534209 | 7.1:-13429078 | MS.gene018065:CDS |
| TCAGCTGTGATGCAAACTGA+TGG | 0.535341 | 7.1:-13429198 | MS.gene018065:intron |
| CAGCAGCCGCTAGAAGATGT+TGG | 0.535413 | 7.1:+13430029 | None:intergenic |
| TGTGGCTACAACTTTAGCCT+TGG | 0.535611 | 7.1:-13429936 | MS.gene018065:CDS |
| TACTGGGATGAACACAAAAT+GGG | 0.538886 | 7.1:-13430068 | MS.gene018065:CDS |
| ATGTGAGCTTTGAAGTGGAT+GGG | 0.539335 | 7.1:-13430549 | MS.gene018065:CDS |
| TTTGAGAGGACTCTTGAAAG+TGG | 0.547746 | 7.1:-13431612 | MS.gene018065:CDS |
| ATGCCACAAGGAGAGAAGCC+CGG | 0.548759 | 7.1:-13424040 | MS.gene018065:CDS |
| TAGAAGATGTTGGGCCATCA+AGG | 0.550820 | 7.1:+13430039 | None:intergenic |
| GAGTGGGAAAGAGAGGCATA+AGG | 0.552695 | 7.1:-13431646 | MS.gene018065:CDS |
| TGGGTACTTTGATCTCTCAT+AGG | 0.553110 | 7.1:+13430457 | None:intergenic |
| CAACTGCTGGAAAATGGTAA+AGG | 0.557886 | 7.1:-13430577 | MS.gene018065:CDS |
| TGGATCAGAGTGGGAAAGAG+AGG | 0.559531 | 7.1:-13431653 | MS.gene018065:CDS |
| CAACACTACAATTAACAGAA+AGG | 0.560566 | 7.1:+13430680 | None:intergenic |
| TGAAATACCGCGGTAGTATG+TGG | 0.562660 | 7.1:-13431578 | MS.gene018065:intron |
| GAGATACGTACAATTGCCTC+CGG | 0.563468 | 7.1:-13424090 | MS.gene018065:CDS |
| AGAATGCAAGGTTCCTCTGA+TGG | 0.563659 | 7.1:+13426695 | None:intergenic |
| CGCACCAGTTCAAGATCACT+GGG | 0.564063 | 7.1:-13431869 | MS.gene018065:CDS |
| TTTCCCACTCTGATCCAAAA+GGG | 0.564821 | 7.1:+13431659 | None:intergenic |
| GTTGTGAGGTCACGCACGGA+AGG | 0.565111 | 7.1:-13430655 | MS.gene018065:CDS |
| ACCCCGGGCTTCTCTCCTTG+TGG | 0.566921 | 7.1:+13424037 | None:intergenic |
| GCAATACCACCTTCTAACAT+TGG | 0.569252 | 7.1:-13430613 | MS.gene018065:CDS |
| ATTGTAGTGTTGGTGTTGTG+AGG | 0.569688 | 7.1:-13430669 | MS.gene018065:CDS |
| TGGATTTGAAGATGGTTTCG+CGG | 0.577032 | 7.1:+13431962 | None:intergenic |
| GTTAGAAGGTGGTATTGCAA+TGG | 0.578466 | 7.1:+13430618 | None:intergenic |
| TAGCGACATAAATGGGAGGC+GGG | 0.581746 | 7.1:-13429055 | MS.gene018065:intron |
| ACAGTGGTGTTGCTCTGCCA+AGG | 0.585829 | 7.1:+13429919 | None:intergenic |
| GTCTATTAAAGTTGAAGACA+TGG | 0.587011 | 7.1:-13430434 | MS.gene018065:CDS |
| GTAGCGACATAAATGGGAGG+CGG | 0.587515 | 7.1:-13429056 | MS.gene018065:CDS |
| CCTCAACACTCTTTCCATCA+GGG | 0.588059 | 7.1:+13431757 | None:intergenic |
| TCGTATTTCAAAGATTTGGT+GGG | 0.589671 | 7.1:-13426753 | MS.gene018065:CDS |
| CGCAATGAAAAGCGACACAT+AGG | 0.595341 | 7.1:+13431725 | None:intergenic |
| CTGCTTCATCAGAGGATCAG+TGG | 0.596818 | 7.1:-13424114 | MS.gene018065:CDS |
| TGTGAGCTTTGAAGTGGATG+GGG | 0.599589 | 7.1:-13430548 | MS.gene018065:CDS |
| GAGAGAGAGATACCATGTGA+GGG | 0.599690 | 7.1:+13426613 | None:intergenic |
| TTTGGTGGGAAGAGAAGTGA+CGG | 0.599876 | 7.1:-13426739 | MS.gene018065:CDS |
| ACAATTGCCTCCGGAAGGTG+TGG | 0.601280 | 7.1:-13424081 | MS.gene018065:CDS |
| AGAGAGAGAGATACCATGTG+AGG | 0.605635 | 7.1:+13426612 | None:intergenic |
| CTGCTTTCAGCTGGAAACAG+TGG | 0.607188 | 7.1:+13429903 | None:intergenic |
| TACGTACAATTGCCTCCGGA+AGG | 0.608966 | 7.1:-13424086 | MS.gene018065:CDS |
| GATGTGAGCTTTGAAGTGGA+TGG | 0.611734 | 7.1:-13430550 | MS.gene018065:CDS |
| TTAACAAAATCAACCACCCC+GGG | 0.612233 | 7.1:+13424022 | None:intergenic |
| TGTGTTTCAGGGGTTACAAG+CGG | 0.617806 | 7.1:-13430753 | MS.gene018065:intron |
| GTAAGGAACTGCTTCATCAG+AGG | 0.623322 | 7.1:-13424122 | MS.gene018065:CDS |
| GTATTGGTCAACAGAATGCA+AGG | 0.624995 | 7.1:+13426683 | None:intergenic |
| GATGTCGACGAAGTTGTCGC+CGG | 0.628940 | 7.1:+13431915 | None:intergenic |
| AAGTGATGTGAGCTTTGAAG+TGG | 0.629597 | 7.1:-13430554 | MS.gene018065:CDS |
| CCCTGATGGAAAGAGTGTTG+AGG | 0.639733 | 7.1:-13431757 | MS.gene018065:CDS |
| CTGATCGTTATGCCTTAGAG+AGG | 0.645940 | 7.1:-13430009 | MS.gene018065:CDS |
| TCCATCACAGAAACAGTGAA+AGG | 0.651002 | 7.1:-13431894 | MS.gene018065:CDS |
| TGGTGACCAATGTTAGAAGG+TGG | 0.651217 | 7.1:+13430607 | None:intergenic |
| AACTGTTGCATGATGCCACA+AGG | 0.651942 | 7.1:-13424052 | MS.gene018065:CDS |
| TGGTGTTGTGAGGTCACGCA+CGG | 0.652634 | 7.1:-13430659 | MS.gene018065:CDS |
| GATTGGGAAATACATAGCGT+CGG | 0.657071 | 7.1:-13431823 | MS.gene018065:CDS |
| ATTAACAAAATCAACCACCC+CGG | 0.669310 | 7.1:+13424021 | None:intergenic |
| GTAGCTCAGTCAGAACAGAT+GGG | 0.683418 | 7.1:+13429151 | None:intergenic |
| CTGGGTACTCGCTTTCAAAG+GGG | 0.684078 | 7.1:-13431851 | MS.gene018065:CDS |
| TCAATGTCCACACCTTCCGG+AGG | 0.686185 | 7.1:+13424074 | None:intergenic |
| GACTGAGCTACTGGAGTACG+TGG | 0.688714 | 7.1:-13429139 | MS.gene018065:CDS |
| ACAAGGAGAGAAGCCCGGGG+TGG | 0.693695 | 7.1:-13424035 | MS.gene018065:CDS |
| AGATGTCGCCATTAATACTG+TGG | 0.695960 | 7.1:-13429954 | MS.gene018065:CDS |
| AAGAACGATTTAGCCATCAG+AGG | 0.696928 | 7.1:-13426708 | MS.gene018065:CDS |
| CCTTATACCTTGAAATACCG+CGG | 0.699018 | 7.1:-13431588 | MS.gene018065:CDS |
| GATGGCCCAACATCTTCTAG+CGG | 0.704220 | 7.1:-13430035 | MS.gene018065:CDS |
| GCCACCTCTGAAAATCTCAG+AGG | 0.704264 | 7.1:-13429863 | MS.gene018065:intron |
| ATGGTAGCGACATAAATGGG+AGG | 0.709241 | 7.1:-13429059 | MS.gene018065:CDS |
| TATTAAAGTTGAAGACATGG+AGG | 0.710382 | 7.1:-13430431 | MS.gene018065:CDS |
| GCCACAAGGAGAGAAGCCCG+GGG | 0.716300 | 7.1:-13424038 | MS.gene018065:CDS |
| TCAAGACAGATACCCTCACA+TGG | 0.727038 | 7.1:-13426625 | MS.gene018065:intron |
| GAGCTTACCACATACTACCG+CGG | 0.744761 | 7.1:+13431571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 13424031 | 13432006 | 13424031 | ID=MS.gene018065 |
| chr7.1 | mRNA | 13424031 | 13432006 | 13424031 | ID=MS.gene018065.t1;Parent=MS.gene018065 |
| chr7.1 | exon | 13431579 | 13432006 | 13431579 | ID=MS.gene018065.t1.exon1;Parent=MS.gene018065.t1 |
| chr7.1 | CDS | 13431579 | 13432006 | 13431579 | ID=cds.MS.gene018065.t1;Parent=MS.gene018065.t1 |
| chr7.1 | exon | 13430417 | 13430765 | 13430417 | ID=MS.gene018065.t1.exon2;Parent=MS.gene018065.t1 |
| chr7.1 | CDS | 13430417 | 13430765 | 13430417 | ID=cds.MS.gene018065.t1;Parent=MS.gene018065.t1 |
| chr7.1 | exon | 13429864 | 13430140 | 13429864 | ID=MS.gene018065.t1.exon3;Parent=MS.gene018065.t1 |
| chr7.1 | CDS | 13429864 | 13430140 | 13429864 | ID=cds.MS.gene018065.t1;Parent=MS.gene018065.t1 |
| chr7.1 | exon | 13429056 | 13429216 | 13429056 | ID=MS.gene018065.t1.exon4;Parent=MS.gene018065.t1 |
| chr7.1 | CDS | 13429056 | 13429216 | 13429056 | ID=cds.MS.gene018065.t1;Parent=MS.gene018065.t1 |
| chr7.1 | exon | 13426626 | 13426784 | 13426626 | ID=MS.gene018065.t1.exon5;Parent=MS.gene018065.t1 |
| chr7.1 | CDS | 13426626 | 13426784 | 13426626 | ID=cds.MS.gene018065.t1;Parent=MS.gene018065.t1 |
| chr7.1 | exon | 13424031 | 13424150 | 13424031 | ID=MS.gene018065.t1.exon6;Parent=MS.gene018065.t1 |
| chr7.1 | CDS | 13424031 | 13424150 | 13424031 | ID=cds.MS.gene018065.t1;Parent=MS.gene018065.t1 |
| Gene Sequence |
| Protein sequence |