AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018118

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018118.t1 MTR_7g095220 99.710 345 1 0 1 345 1 345 0.0 707
MS.gene018118.t1 MTR_3g085570 30.620 258 157 7 2 250 33 277 2.04e-25 105
MS.gene018118.t1 MTR_8g080370 30.415 217 136 5 2 214 49 254 2.97e-22 97.1
MS.gene018118.t1 MTR_8g085600 30.769 195 121 5 4 194 77 261 2.89e-21 94.4
MS.gene018118.t1 MTR_4g114110 30.986 213 132 6 2 210 79 280 2.96e-20 91.7
MS.gene018118.t1 MTR_2g008440 31.004 229 122 6 2 194 41 269 4.89e-19 88.2
MS.gene018118.t1 MTR_2g102370 28.111 217 129 6 3 200 2 210 2.42e-18 85.5
MS.gene018118.t1 MTR_2g094093 27.554 323 187 15 4 300 20 321 3.72e-18 84.7
MS.gene018118.t1 MTR_8g030940 25.723 311 197 10 4 294 25 321 1.68e-17 82.8
MS.gene018118.t1 MTR_4g011900 26.522 230 142 6 3 214 4 224 3.54e-17 82.0
MS.gene018118.t1 MTR_0105s0130 23.148 324 201 10 4 297 89 394 4.22e-17 82.4
MS.gene018118.t1 MTR_0345s0010 23.148 324 201 10 4 297 89 394 5.28e-17 82.0
MS.gene018118.t1 MTR_0105s0170 23.148 324 201 10 4 297 102 407 7.06e-17 81.6
MS.gene018118.t1 MTR_1330s0010 23.148 324 201 10 4 297 102 407 7.58e-17 81.6
MS.gene018118.t1 MTR_0105s0040 22.162 370 233 12 4 343 187 531 1.35e-16 81.3
MS.gene018118.t1 MTR_0105s0020 22.840 324 202 10 4 297 89 394 1.91e-16 80.5
MS.gene018118.t1 MTR_2g019230 29.493 217 136 7 4 213 52 258 9.38e-16 78.2
MS.gene018118.t1 MTR_7g096420 28.899 218 140 7 4 210 34 247 1.69e-15 77.4
MS.gene018118.t1 MTR_3g108860 28.767 219 119 6 3 213 16 205 7.43e-15 75.1
MS.gene018118.t1 MTR_7g029290 25.079 315 191 13 8 295 59 355 7.63e-15 75.5
MS.gene018118.t1 MTR_6g023805 24.380 242 148 7 8 231 60 284 4.97e-14 72.8
MS.gene018118.t1 MTR_0496s0010 21.184 321 207 9 4 295 71 374 6.11e-14 72.8
MS.gene018118.t1 MTR_8g085650 24.830 294 160 9 3 259 6 275 1.66e-13 70.9
MS.gene018118.t1 MTR_4g022400 22.523 333 196 10 2 297 66 373 2.56e-13 70.9
MS.gene018118.t1 MTR_7g070320 30.049 203 111 10 65 253 489 674 2.69e-13 71.2
MS.gene018118.t1 MTR_8g468030 23.645 203 137 4 13 214 159 344 1.41e-12 68.9
MS.gene018118.t1 MTR_4g108280 24.186 215 143 5 2 214 29 225 2.16e-12 67.8
MS.gene018118.t1 MTR_3g094850 27.136 199 118 4 2 192 7 186 4.16e-12 67.0
MS.gene018118.t1 MTR_4g022260 21.605 324 206 9 4 297 71 376 6.29e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018118.t1 AT3G63220 67.536 345 112 0 1 345 1 345 1.82e-180 503
MS.gene018118.t1 AT3G63220 67.536 345 112 0 1 345 8 352 3.07e-180 503
MS.gene018118.t1 AT3G63220 67.536 345 112 0 1 345 8 352 3.07e-180 503
MS.gene018118.t1 AT1G16250 29.659 381 216 12 4 343 8 377 1.73e-34 130
MS.gene018118.t1 AT1G16250 29.659 381 216 12 4 343 8 377 1.73e-34 130
MS.gene018118.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene018118.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene018118.t1 AT1G67480 31.776 214 133 4 4 214 39 242 6.27e-24 101
MS.gene018118.t1 AT1G55270 32.308 195 118 5 4 194 78 262 2.83e-22 97.4
MS.gene018118.t1 AT2G24540 30.500 200 116 4 4 194 28 213 2.28e-21 94.4
MS.gene018118.t1 AT1G27420 27.692 195 132 3 2 191 8 198 1.04e-18 86.3
MS.gene018118.t1 AT4G03030 30.769 221 133 7 4 207 38 255 1.39e-18 86.7
MS.gene018118.t1 AT1G80440 27.876 226 140 6 3 214 2 218 2.92e-18 85.1
MS.gene018118.t1 AT1G14330 22.327 318 206 6 4 295 94 396 2.98e-17 82.8
MS.gene018118.t1 AT5G03000 28.814 236 141 8 4 229 39 257 2.94e-16 79.3
MS.gene018118.t1 AT5G03020 28.571 189 116 5 10 191 22 198 4.18e-16 78.6
MS.gene018118.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene018118.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene018118.t1 AT2G02870 23.013 239 169 3 4 242 117 340 1.84e-15 77.4
MS.gene018118.t1 AT5G02980 27.083 240 128 6 2 215 11 229 6.05e-15 75.1
MS.gene018118.t1 AT1G30090 30.594 219 131 9 4 213 53 259 8.36e-15 75.5
MS.gene018118.t1 AT3G27150 23.988 321 193 11 12 301 78 378 1.03e-14 75.1
MS.gene018118.t1 AT3G27150 23.988 321 193 11 12 301 78 378 1.03e-14 75.1
MS.gene018118.t1 AT1G26930 23.944 213 142 5 4 214 71 265 1.07e-13 72.0
MS.gene018118.t1 AT1G55270 32.812 128 74 4 69 194 19 136 1.72e-13 70.5
MS.gene018118.t1 AT2G22030 27.411 197 122 4 2 192 23 204 2.34e-13 70.9
MS.gene018118.t1 AT3G61350 29.255 188 111 6 4 183 21 194 5.48e-13 69.7
MS.gene018118.t1 AT3G61350 29.255 188 111 6 4 183 21 194 5.48e-13 69.7
MS.gene018118.t1 AT2G21950 28.634 227 135 8 2 214 18 231 6.74e-13 69.3
MS.gene018118.t1 AT3G43710 27.426 237 147 7 5 231 26 247 6.85e-13 69.3
MS.gene018118.t1 AT3G46050 26.364 220 139 6 5 215 18 223 3.36e-12 67.4
MS.gene018118.t1 AT4G19330 24.797 246 153 7 8 238 34 262 8.07e-12 66.2
MS.gene018118.t1 AT4G29370 26.577 222 136 9 2 213 23 227 1.18e-11 65.9
MS.gene018118.t1 AT4G33900 27.895 190 126 4 8 188 15 202 2.58e-11 64.7

Find 97 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGGCCCACTGTTGGATTA+TGG 0.219380 7.1:-12768518 None:intergenic
TAGCTTTGGATGGAGGTAAA+AGG 0.268586 7.1:-12768176 None:intergenic
CACCTTATTGCAACAGCATC+AGG 0.322901 7.1:-12768139 None:intergenic
GGGGCCCACTGTTGGATTAT+GGG 0.332679 7.1:-12768517 None:intergenic
AGAATTGGGTTTGCAATGAT+TGG 0.333271 7.1:+12768946 MS.gene018118:CDS
AGGTCCAATGGCAGTAGTTC+AGG 0.344387 7.1:+12768834 MS.gene018118:CDS
TAGAGGTTGTCTCTCGTTCT+TGG 0.348117 7.1:+12768197 MS.gene018118:CDS
TTATCAGATGTTGATGTTCT+CGG 0.371892 7.1:+12769039 MS.gene018118:CDS
ACCGTGTCATTGGAGCTATT+TGG 0.377305 7.1:-12769089 None:intergenic
TACATGATTGGAGGCGTCAT+TGG 0.386097 7.1:+12768985 MS.gene018118:CDS
TACAGTTGCCATACATTCTC+TGG 0.396615 7.1:-12768307 None:intergenic
GCTGGAAAGTTGTTTGTCAT+TGG 0.404038 7.1:+12768415 MS.gene018118:CDS
GGTGATGATTTATACATGAT+TGG 0.404282 7.1:+12768973 MS.gene018118:CDS
AGAACATCAACATCTGATAA+TGG 0.409101 7.1:-12769036 None:intergenic
TCCCTGATGCTGTTGCAATA+AGG 0.411155 7.1:+12768137 MS.gene018118:CDS
GATGTTGATGTTCTCGGACT+TGG 0.411384 7.1:+12769045 MS.gene018118:CDS
TAGACAATGCAGGGGCTAGA+TGG 0.415228 7.1:+12768785 MS.gene018118:CDS
ATAATGTCTGAACTGATTGA+AGG 0.416927 7.1:+12768112 None:intergenic
ACCAATCACTATTCCTGAAC+AGG 0.430627 7.1:-12768716 None:intergenic
CAACTTTCCAGCTGCGGATA+CGG 0.435951 7.1:-12768404 None:intergenic
TTGGACCTGACAGATGGAAC+TGG 0.437231 7.1:+12769004 MS.gene018118:CDS
ACAGCATGCAAACATAGAAC+GGG 0.441369 7.1:-12768560 None:intergenic
AATGGGAAAATTGTTGTCGC+TGG 0.444336 7.1:+12768589 MS.gene018118:CDS
ATGACCCTCTTAGAGATCTC+TGG 0.444585 7.1:+12768329 MS.gene018118:CDS
CGAGAGACAACCTCTAGCTT+TGG 0.447447 7.1:-12768190 None:intergenic
GTACCACGACACCGTGTCAT+TGG 0.449231 7.1:-12769099 None:intergenic
GCCTGTTCAGGAATAGTGAT+TGG 0.449318 7.1:+12768715 MS.gene018118:CDS
TGATAGTTCTGGGCTATGAA+TGG 0.452045 7.1:-12768227 None:intergenic
ACTCAAAATTCAGCCTGTTC+AGG 0.453864 7.1:+12768703 MS.gene018118:CDS
AATCCAACAGTGGGCCCCTC+GGG 0.459039 7.1:+12768522 MS.gene018118:CDS
AGCAAGGTGCCTGGTCTTTG+AGG 0.462553 7.1:-12768371 None:intergenic
ATGTCCCAGTTCCATCTGTC+AGG 0.465004 7.1:-12769009 None:intergenic
GAGGAGTGCGAGTGGCTTCA+AGG 0.467583 7.1:+12768814 MS.gene018118:CDS
ACCAGGCACCTTGCTCACTT+TGG 0.468091 7.1:+12768379 MS.gene018118:CDS
CGGTGTCGTGGTACCATTGT+TGG 0.476922 7.1:+12769108 MS.gene018118:CDS
CTGGTCTTTGAGGGAAGAAC+GGG 0.478632 7.1:-12768361 None:intergenic
TAATCCAACAGTGGGCCCCT+CGG 0.485586 7.1:+12768521 MS.gene018118:CDS
ATCATAAAGCAAGACAAAGA+AGG 0.487099 7.1:+12768886 MS.gene018118:CDS
AGCTTTGGATGGAGGTAAAA+GGG 0.491803 7.1:-12768175 None:intergenic
AAGCCCGAGGGGCCCACTGT+TGG 0.494183 7.1:-12768525 None:intergenic
ACCAAAGTGAGCAAGGTGCC+TGG 0.495529 7.1:-12768380 None:intergenic
TTTGGTGCCGTATCCGCAGC+TGG 0.498780 7.1:+12768397 MS.gene018118:CDS
GGAGTCCATACATCCTTCTC+AGG 0.502640 7.1:-12768661 None:intergenic
GCAAGGTGCCTGGTCTTTGA+GGG 0.508996 7.1:-12768370 None:intergenic
GCATCCTGAACTACTGCCAT+TGG 0.513611 7.1:-12768838 None:intergenic
ATGGGAAAATTGTTGTCGCT+GGG 0.520052 7.1:+12768590 MS.gene018118:CDS
CCGTTCTTCCCTCAAAGACC+AGG 0.521677 7.1:+12768362 MS.gene018118:CDS
GGAAAGTTGTTTGTCATTGG+CGG 0.525545 7.1:+12768418 MS.gene018118:CDS
CACAGCATGCAAACATAGAA+CGG 0.534363 7.1:-12768561 None:intergenic
ACGATCCTGAGAAGGATGTA+TGG 0.540634 7.1:+12768656 MS.gene018118:CDS
GCACTTTGTGTTATGAGCAA+TGG 0.543239 7.1:+12768859 MS.gene018118:CDS
GGAGCTATTTGGCGCCAAGT+TGG 0.544319 7.1:-12769078 None:intergenic
GGGAAAATTGTTGTCGCTGG+GGG 0.549666 7.1:+12768592 MS.gene018118:CDS
GATGATTTATACATGATTGG+AGG 0.550401 7.1:+12768976 MS.gene018118:CDS
AAAACATCCATCGTGATCAC+CGG 0.551179 7.1:-12768467 None:intergenic
GGGCCCACTGTTGGATTATG+GGG 0.555055 7.1:-12768516 None:intergenic
TCATAAAGCAAGACAAAGAA+GGG 0.555728 7.1:+12768887 MS.gene018118:CDS
GGGTTTGCAATGATTGGACT+AGG 0.558189 7.1:+12768952 MS.gene018118:CDS
CTTTGAGGGAAGAACGGGAA+GGG 0.565020 7.1:-12768356 None:intergenic
CCTGGTCTTTGAGGGAAGAA+CGG 0.568560 7.1:-12768362 None:intergenic
GTGCGATGAAGATCAGGCAT+TGG 0.570847 7.1:-12768682 None:intergenic
CCATCGTGATCACCGGTCGA+AGG 0.573037 7.1:-12768460 None:intergenic
AGACAACCTCTAGCTTTGGA+TGG 0.574344 7.1:-12768186 None:intergenic
GTAATCCAGAGATCTCTAAG+AGG 0.575936 7.1:-12768334 None:intergenic
GCCAAATAGCTCCAATGACA+CGG 0.582259 7.1:+12769088 MS.gene018118:CDS
TTACCTCCATCCAAAGCTAG+AGG 0.588537 7.1:+12768180 MS.gene018118:CDS
GCGTCATTGGACCTGACAGA+TGG 0.590626 7.1:+12768998 MS.gene018118:CDS
GGAACAAGCATTGAAGCCCG+AGG 0.593474 7.1:-12768538 None:intergenic
GAACAAGCATTGAAGCCCGA+GGG 0.596251 7.1:-12768537 None:intergenic
TGTTCAGGAATAGTGATTGG+TGG 0.597908 7.1:+12768718 MS.gene018118:CDS
CGAGTGGCTTCAAGGTCCAA+TGG 0.598467 7.1:+12768822 MS.gene018118:CDS
CAACCTCTAGCTTTGGATGG+AGG 0.602511 7.1:-12768183 None:intergenic
AAGTTGTTTGTCATTGGCGG+TGG 0.603362 7.1:+12768421 MS.gene018118:CDS
CCTTCGACCGGTGATCACGA+TGG 0.605134 7.1:+12768460 MS.gene018118:CDS
TGGACCTGACAGATGGAACT+GGG 0.607636 7.1:+12769005 MS.gene018118:CDS
ACAGGAGGTTGCTTCATCTG+AGG 0.609268 7.1:+12768258 MS.gene018118:CDS
GGTAAAAGGGAACGCGTGCA+AGG 0.612187 7.1:-12768162 None:intergenic
GTCATATGACCAGACTTCGT+CGG 0.615421 7.1:-12768494 None:intergenic
AGAAATGTACGATCCTGAGA+AGG 0.617500 7.1:+12768648 MS.gene018118:CDS
ACCTTATTGCAACAGCATCA+GGG 0.622347 7.1:-12768138 None:intergenic
ATACGGCACCAAAGTGAGCA+AGG 0.624375 7.1:-12768387 None:intergenic
TGACCCCATAATCCAACAGT+GGG 0.628215 7.1:+12768513 MS.gene018118:CDS
GATCAAAAGCACAGACACAC+AGG 0.628483 7.1:-12768285 None:intergenic
GATGCTGTTGATCCTTCGAC+CGG 0.628985 7.1:+12768448 MS.gene018118:CDS
TAATCCAGAGATCTCTAAGA+GGG 0.633713 7.1:-12768333 None:intergenic
CATCAGTGTACAACCAACAA+TGG 0.634433 7.1:-12769121 None:intergenic
GCTCCAATGACACGGTGTCG+TGG 0.641084 7.1:+12769096 MS.gene018118:CDS
TTGGTAGTGAGAGACCAACT+TGG 0.641441 7.1:+12769064 MS.gene018118:CDS
AACAAGCATTGAAGCCCGAG+GGG 0.644286 7.1:-12768536 None:intergenic
TGGGAAAATTGTTGTCGCTG+GGG 0.645794 7.1:+12768591 MS.gene018118:CDS
GGATCGTCGAGGAGTGCGAG+TGG 0.648916 7.1:+12768806 MS.gene018118:CDS
GACAAACAACTTTCCAGCTG+CGG 0.655991 7.1:-12768410 None:intergenic
AAAGATGCATGTACTGCACA+AGG 0.662171 7.1:+12768741 MS.gene018118:CDS
ATGACCCCATAATCCAACAG+TGG 0.692852 7.1:+12768512 MS.gene018118:CDS
CAGCATGCAAACATAGAACG+GGG 0.697725 7.1:-12768559 None:intergenic
TCTTTGAGGGAAGAACGGGA+AGG 0.697994 7.1:-12768357 None:intergenic
AGGGGCTAGATGGATCGTCG+AGG 0.760201 7.1:+12768795 MS.gene018118:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAGATTTTAAAAAGAGAAT+TGG + chr7.1:12768931-12768950 MS.gene018118:CDS 20.0%
!!! CAGATTTTAAAAAGAGAATT+GGG + chr7.1:12768932-12768951 MS.gene018118:CDS 20.0%
AGAACATCAACATCTGATAA+TGG - chr7.1:12769039-12769058 None:intergenic 30.0%
AGAACTATCAAAAATTCGAC+AGG + chr7.1:12768240-12768259 MS.gene018118:CDS 30.0%
ATCATAAAGCAAGACAAAGA+AGG + chr7.1:12768886-12768905 MS.gene018118:CDS 30.0%
GATGATTTATACATGATTGG+AGG + chr7.1:12768976-12768995 MS.gene018118:CDS 30.0%
GGTGATGATTTATACATGAT+TGG + chr7.1:12768973-12768992 MS.gene018118:CDS 30.0%
TCATAAAGCAAGACAAAGAA+GGG + chr7.1:12768887-12768906 MS.gene018118:CDS 30.0%
TTATCAGATGTTGATGTTCT+CGG + chr7.1:12769039-12769058 MS.gene018118:CDS 30.0%
!! GTCGAATTTTTGATAGTTCT+GGG - chr7.1:12768240-12768259 None:intergenic 30.0%
!! TGTCGAATTTTTGATAGTTC+TGG - chr7.1:12768241-12768260 None:intergenic 30.0%
ACTATCAAAAATTCGACAGG+AGG + chr7.1:12768243-12768262 MS.gene018118:CDS 35.0%
AGAATTGGGTTTGCAATGAT+TGG + chr7.1:12768946-12768965 MS.gene018118:CDS 35.0%
! CTTTTGATCCAGAGAATGTA+TGG + chr7.1:12768299-12768318 MS.gene018118:CDS 35.0%
! TAATCCAGAGATCTCTAAGA+GGG - chr7.1:12768336-12768355 None:intergenic 35.0%
!! TTGCATGCTGTGTTTTGAAT+GGG + chr7.1:12768572-12768591 MS.gene018118:CDS 35.0%
!! TTTGCATGCTGTGTTTTGAA+TGG + chr7.1:12768571-12768590 MS.gene018118:CDS 35.0%
!!! TGCAAGTTTTAGACAATGCA+GGG + chr7.1:12768776-12768795 MS.gene018118:CDS 35.0%
AAAACATCCATCGTGATCAC+CGG - chr7.1:12768470-12768489 None:intergenic 40.0%
AAAGATGCATGTACTGCACA+AGG + chr7.1:12768741-12768760 MS.gene018118:CDS 40.0%
AATGGGAAAATTGTTGTCGC+TGG + chr7.1:12768589-12768608 MS.gene018118:CDS 40.0%
ACAGCATGCAAACATAGAAC+GGG - chr7.1:12768563-12768582 None:intergenic 40.0%
ACCAATCACTATTCCTGAAC+AGG - chr7.1:12768719-12768738 None:intergenic 40.0%
ACCTTATTGCAACAGCATCA+GGG - chr7.1:12768141-12768160 None:intergenic 40.0%
ACTCAAAATTCAGCCTGTTC+AGG + chr7.1:12768703-12768722 MS.gene018118:CDS 40.0%
AGAAATGTACGATCCTGAGA+AGG + chr7.1:12768648-12768667 MS.gene018118:CDS 40.0%
ATGGGAAAATTGTTGTCGCT+GGG + chr7.1:12768590-12768609 MS.gene018118:CDS 40.0%
CACAGCATGCAAACATAGAA+CGG - chr7.1:12768564-12768583 None:intergenic 40.0%
CATCAGTGTACAACCAACAA+TGG - chr7.1:12769124-12769143 None:intergenic 40.0%
GCACTTTGTGTTATGAGCAA+TGG + chr7.1:12768859-12768878 MS.gene018118:CDS 40.0%
GCTGGAAAGTTGTTTGTCAT+TGG + chr7.1:12768415-12768434 MS.gene018118:CDS 40.0%
GGAAAGTTGTTTGTCATTGG+CGG + chr7.1:12768418-12768437 MS.gene018118:CDS 40.0%
GTAATCCAGAGATCTCTAAG+AGG - chr7.1:12768337-12768356 None:intergenic 40.0%
TACAGTTGCCATACATTCTC+TGG - chr7.1:12768310-12768329 None:intergenic 40.0%
TGTTCAGGAATAGTGATTGG+TGG + chr7.1:12768718-12768737 MS.gene018118:CDS 40.0%
!! AGCTTTGGATGGAGGTAAAA+GGG - chr7.1:12768178-12768197 None:intergenic 40.0%
!! TAGCTTTGGATGGAGGTAAA+AGG - chr7.1:12768179-12768198 None:intergenic 40.0%
!! TGATAGTTCTGGGCTATGAA+TGG - chr7.1:12768230-12768249 None:intergenic 40.0%
!! TTTTGAGTGCGATGAAGATC+AGG - chr7.1:12768691-12768710 None:intergenic 40.0%
!!! GCAAGTTTTAGACAATGCAG+GGG + chr7.1:12768777-12768796 MS.gene018118:CDS 40.0%
!!! GTGCAAGTTTTAGACAATGC+AGG + chr7.1:12768775-12768794 MS.gene018118:CDS 40.0%
AAGTTGTTTGTCATTGGCGG+TGG + chr7.1:12768421-12768440 MS.gene018118:CDS 45.0%
ACGATCCTGAGAAGGATGTA+TGG + chr7.1:12768656-12768675 MS.gene018118:CDS 45.0%
ATGACCCCATAATCCAACAG+TGG + chr7.1:12768512-12768531 MS.gene018118:CDS 45.0%
ATGACCCTCTTAGAGATCTC+TGG + chr7.1:12768329-12768348 MS.gene018118:CDS 45.0%
CACCTTATTGCAACAGCATC+AGG - chr7.1:12768142-12768161 None:intergenic 45.0%
CAGCATGCAAACATAGAACG+GGG - chr7.1:12768562-12768581 None:intergenic 45.0%
GACAAACAACTTTCCAGCTG+CGG - chr7.1:12768413-12768432 None:intergenic 45.0%
GATGTTGATGTTCTCGGACT+TGG + chr7.1:12769045-12769064 MS.gene018118:CDS 45.0%
GCCAAATAGCTCCAATGACA+CGG + chr7.1:12769088-12769107 MS.gene018118:CDS 45.0%
GCCTGTTCAGGAATAGTGAT+TGG + chr7.1:12768715-12768734 MS.gene018118:CDS 45.0%
GGGTTTGCAATGATTGGACT+AGG + chr7.1:12768952-12768971 MS.gene018118:CDS 45.0%
GTCATATGACCAGACTTCGT+CGG - chr7.1:12768497-12768516 None:intergenic 45.0%
TAGAGGTTGTCTCTCGTTCT+TGG + chr7.1:12768197-12768216 MS.gene018118:CDS 45.0%
TCCCTGATGCTGTTGCAATA+AGG + chr7.1:12768137-12768156 MS.gene018118:CDS 45.0%
TGACCCCATAATCCAACAGT+GGG + chr7.1:12768513-12768532 MS.gene018118:CDS 45.0%
TGGGAAAATTGTTGTCGCTG+GGG + chr7.1:12768591-12768610 MS.gene018118:CDS 45.0%
TTACCTCCATCCAAAGCTAG+AGG + chr7.1:12768180-12768199 MS.gene018118:CDS 45.0%
! ACCGTGTCATTGGAGCTATT+TGG - chr7.1:12769092-12769111 None:intergenic 45.0%
! GATCAAAAGCACAGACACAC+AGG - chr7.1:12768288-12768307 None:intergenic 45.0%
!! AGACAACCTCTAGCTTTGGA+TGG - chr7.1:12768189-12768208 None:intergenic 45.0%
!! TACATGATTGGAGGCGTCAT+TGG + chr7.1:12768985-12769004 MS.gene018118:CDS 45.0%
!! TTGGTAGTGAGAGACCAACT+TGG + chr7.1:12769064-12769083 MS.gene018118:CDS 45.0%
ACAGGAGGTTGCTTCATCTG+AGG + chr7.1:12768258-12768277 MS.gene018118:CDS 50.0%
AGGTCCAATGGCAGTAGTTC+AGG + chr7.1:12768834-12768853 MS.gene018118:CDS 50.0%
ATACGGCACCAAAGTGAGCA+AGG - chr7.1:12768390-12768409 None:intergenic 50.0%
ATGTCCCAGTTCCATCTGTC+AGG - chr7.1:12769012-12769031 None:intergenic 50.0%
CAACTTTCCAGCTGCGGATA+CGG - chr7.1:12768407-12768426 None:intergenic 50.0%
GATGCTGTTGATCCTTCGAC+CGG + chr7.1:12768448-12768467 MS.gene018118:CDS 50.0%
GCATCCTGAACTACTGCCAT+TGG - chr7.1:12768841-12768860 None:intergenic 50.0%
GGAGTCCATACATCCTTCTC+AGG - chr7.1:12768664-12768683 None:intergenic 50.0%
GGGAAAATTGTTGTCGCTGG+GGG + chr7.1:12768592-12768611 MS.gene018118:CDS 50.0%
GTGCGATGAAGATCAGGCAT+TGG - chr7.1:12768685-12768704 None:intergenic 50.0%
TAGACAATGCAGGGGCTAGA+TGG + chr7.1:12768785-12768804 MS.gene018118:CDS 50.0%
TGGACCTGACAGATGGAACT+GGG + chr7.1:12769005-12769024 MS.gene018118:CDS 50.0%
TTGGACCTGACAGATGGAAC+TGG + chr7.1:12769004-12769023 MS.gene018118:CDS 50.0%
! CCTGGTCTTTGAGGGAAGAA+CGG - chr7.1:12768365-12768384 None:intergenic 50.0%
! CGAGAGACAACCTCTAGCTT+TGG - chr7.1:12768193-12768212 None:intergenic 50.0%
! CTGGTCTTTGAGGGAAGAAC+GGG - chr7.1:12768364-12768383 None:intergenic 50.0%
! CTTTGAGGGAAGAACGGGAA+GGG - chr7.1:12768359-12768378 None:intergenic 50.0%
! GTTTTGCAACCGACGAAGTC+TGG + chr7.1:12768485-12768504 MS.gene018118:CDS 50.0%
! TCTTTGAGGGAAGAACGGGA+AGG - chr7.1:12768360-12768379 None:intergenic 50.0%
!! AACAAGCATTGAAGCCCGAG+GGG - chr7.1:12768539-12768558 None:intergenic 50.0%
!! CAACCTCTAGCTTTGGATGG+AGG - chr7.1:12768186-12768205 None:intergenic 50.0%
!! GAACAAGCATTGAAGCCCGA+GGG - chr7.1:12768540-12768559 None:intergenic 50.0%
ACCAGGCACCTTGCTCACTT+TGG + chr7.1:12768379-12768398 MS.gene018118:CDS 55.0%
AGGGGCCCACTGTTGGATTA+TGG - chr7.1:12768521-12768540 None:intergenic 55.0%
CCGTTCTTCCCTCAAAGACC+AGG + chr7.1:12768362-12768381 MS.gene018118:CDS 55.0%
CGAGTGGCTTCAAGGTCCAA+TGG + chr7.1:12768822-12768841 MS.gene018118:CDS 55.0%
GCGTCATTGGACCTGACAGA+TGG + chr7.1:12768998-12769017 MS.gene018118:CDS 55.0%
GGAGCTATTTGGCGCCAAGT+TGG - chr7.1:12769081-12769100 None:intergenic 55.0%
GGGCCCACTGTTGGATTATG+GGG - chr7.1:12768519-12768538 None:intergenic 55.0%
GGGGCCCACTGTTGGATTAT+GGG - chr7.1:12768520-12768539 None:intergenic 55.0%
GGTAAAAGGGAACGCGTGCA+AGG - chr7.1:12768165-12768184 None:intergenic 55.0%
GTACCACGACACCGTGTCAT+TGG - chr7.1:12769102-12769121 None:intergenic 55.0%
TAATCCAACAGTGGGCCCCT+CGG + chr7.1:12768521-12768540 MS.gene018118:CDS 55.0%
! ACCAAAGTGAGCAAGGTGCC+TGG - chr7.1:12768383-12768402 None:intergenic 55.0%
! AGCAAGGTGCCTGGTCTTTG+AGG - chr7.1:12768374-12768393 None:intergenic 55.0%
! GCAAGGTGCCTGGTCTTTGA+GGG - chr7.1:12768373-12768392 None:intergenic 55.0%
!! CGGTGTCGTGGTACCATTGT+TGG + chr7.1:12769108-12769127 MS.gene018118:CDS 55.0%
!! GGAACAAGCATTGAAGCCCG+AGG - chr7.1:12768541-12768560 None:intergenic 55.0%
AATCCAACAGTGGGCCCCTC+GGG + chr7.1:12768522-12768541 MS.gene018118:CDS 60.0%
AGGGGCTAGATGGATCGTCG+AGG + chr7.1:12768795-12768814 MS.gene018118:CDS 60.0%
CCATCGTGATCACCGGTCGA+AGG - chr7.1:12768463-12768482 None:intergenic 60.0%
CCTTCGACCGGTGATCACGA+TGG + chr7.1:12768460-12768479 MS.gene018118:CDS 60.0%
! GAGGAGTGCGAGTGGCTTCA+AGG + chr7.1:12768814-12768833 MS.gene018118:CDS 60.0%
! GCTCCAATGACACGGTGTCG+TGG + chr7.1:12769096-12769115 MS.gene018118:CDS 60.0%
!! TTTGGTGCCGTATCCGCAGC+TGG + chr7.1:12768397-12768416 MS.gene018118:CDS 60.0%
! GGATCGTCGAGGAGTGCGAG+TGG + chr7.1:12768806-12768825 MS.gene018118:CDS 65.0%
AAGCCCGAGGGGCCCACTGT+TGG - chr7.1:12768528-12768547 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 12768115 12769152 12768115 ID=MS.gene018118
chr7.1 mRNA 12768115 12769152 12768115 ID=MS.gene018118.t1;Parent=MS.gene018118
chr7.1 exon 12768115 12769152 12768115 ID=MS.gene018118.t1.exon1;Parent=MS.gene018118.t1
chr7.1 CDS 12768115 12769152 12768115 ID=cds.MS.gene018118.t1;Parent=MS.gene018118.t1
Gene Sequence

>MS.gene018118

ATGTCTGAACTGATTGAAGGACTCCCTGATGCTGTTGCAATAAGGTGCCTTGCACGCGTTCCCTTTTACCTCCATCCAAAGCTAGAGGTTGTCTCTCGTTCTTGGCAAGCAGCCATTCATAGCCCAGAACTATCAAAAATTCGACAGGAGGTTGCTTCATCTGAGGATCTCCTGTGTGTCTGTGCTTTTGATCCAGAGAATGTATGGCAACTGTATGACCCTCTTAGAGATCTCTGGATTACCCTTCCCGTTCTTCCCTCAAAGACCAGGCACCTTGCTCACTTTGGTGCCGTATCCGCAGCTGGAAAGTTGTTTGTCATTGGCGGTGGAAGTGATGCTGTTGATCCTTCGACCGGTGATCACGATGGATGTTTTGCAACCGACGAAGTCTGGTCATATGACCCCATAATCCAACAGTGGGCCCCTCGGGCTTCAATGCTTGTTCCCCGTTCTATGTTTGCATGCTGTGTTTTGAATGGGAAAATTGTTGTCGCTGGGGGATTCACTAGCTGTAGAAAAACAATCTCTCAAGCAGAAATGTACGATCCTGAGAAGGATGTATGGACTCCAATGCCTGATCTTCATCGCACTCAAAATTCAGCCTGTTCAGGAATAGTGATTGGTGGAAAGATGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGGCTAGATGGATCGTCGAGGAGTGCGAGTGGCTTCAAGGTCCAATGGCAGTAGTTCAGGATGCACTTTGTGTTATGAGCAATGGATCTATCATAAAGCAAGACAAAGAAGGGAGAAAGATTGTAAGTTCAGCAACAGATTTTAAAAAGAGAATTGGGTTTGCAATGATTGGACTAGGTGATGATTTATACATGATTGGAGGCGTCATTGGACCTGACAGATGGAACTGGGACATTAAGCCATTATCAGATGTTGATGTTCTCGGACTTGGTAGTGAGAGACCAACTTGGCGCCAAATAGCTCCAATGACACGGTGTCGTGGTACCATTGTTGGTTGTACACTGATGAGAATTTAA
Protein sequence

>MS.gene018118.t1

MSELIEGLPDAVAIRCLARVPFYLHPKLEVVSRSWQAAIHSPELSKIRQEVASSEDLLCVCAFDPENVWQLYDPLRDLWITLPVLPSKTRHLAHFGAVSAAGKLFVIGGGSDAVDPSTGDHDGCFATDEVWSYDPIIQQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKTISQAEMYDPEKDVWTPMPDLHRTQNSACSGIVIGGKMHVLHKDMSTVQVLDNAGARWIVEECEWLQGPMAVVQDALCVMSNGSIIKQDKEGRKIVSSATDFKKRIGFAMIGLGDDLYMIGGVIGPDRWNWDIKPLSDVDVLGLGSERPTWRQIAPMTRCRGTIVGCTLMRI