Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018581.t1 | XP_003625478.1 | 71.1 | 509 | 16 | 1 | 1 | 378 | 6 | 514 | 3.60E-120 | 441.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018581.t1 | A2Q5K6 | 71.1 | 509 | 16 | 1 | 1 | 378 | 6 | 514 | 2.6e-120 | 441.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81951 | MS.gene018581 | PPI |
| MS.gene02648 | MS.gene018581 | PPI |
| MS.gene018581 | MS.gene013681 | PPI |
| MS.gene018581 | MS.gene02491 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018581.t1 | MTR_7g099570 | 93.333 | 315 | 20 | 1 | 1 | 314 | 6 | 320 | 0.0 | 574 |
| MS.gene018581.t1 | MTR_7g099570 | 96.923 | 65 | 2 | 0 | 314 | 378 | 450 | 514 | 2.47e-38 | 146 |
| MS.gene018581.t1 | MTR_1g069110 | 40.404 | 396 | 167 | 5 | 1 | 378 | 15 | 359 | 7.03e-89 | 277 |
| MS.gene018581.t1 | MTR_7g099580 | 68.205 | 195 | 61 | 1 | 1 | 194 | 9 | 203 | 1.34e-87 | 270 |
| MS.gene018581.t1 | MTR_7g099550 | 58.095 | 105 | 39 | 1 | 63 | 167 | 136 | 235 | 1.09e-30 | 118 |
| MS.gene018581.t1 | MTR_8g069880 | 26.804 | 388 | 234 | 11 | 7 | 377 | 10 | 364 | 2.83e-25 | 107 |
| MS.gene018581.t1 | MTR_2g101310 | 28.470 | 281 | 187 | 7 | 32 | 308 | 134 | 404 | 1.74e-23 | 103 |
| MS.gene018581.t1 | MTR_2g101310 | 28.470 | 281 | 187 | 7 | 32 | 308 | 134 | 404 | 2.36e-23 | 102 |
| MS.gene018581.t1 | MTR_8g072510 | 22.646 | 393 | 245 | 10 | 16 | 385 | 22 | 378 | 9.49e-23 | 100 |
| MS.gene018581.t1 | MTR_7g021090 | 24.257 | 404 | 245 | 13 | 4 | 387 | 9 | 371 | 1.47e-22 | 99.4 |
| MS.gene018581.t1 | MTR_2g101320 | 29.630 | 216 | 144 | 3 | 32 | 247 | 134 | 341 | 1.01e-21 | 98.2 |
| MS.gene018581.t1 | MTR_1g115575 | 25.450 | 389 | 245 | 13 | 4 | 383 | 135 | 487 | 3.55e-21 | 96.3 |
| MS.gene018581.t1 | MTR_8g073260 | 25.455 | 330 | 206 | 8 | 7 | 325 | 14 | 314 | 5.31e-21 | 95.1 |
| MS.gene018581.t1 | MTR_8g068990 | 24.444 | 405 | 247 | 8 | 7 | 395 | 15 | 376 | 6.43e-21 | 94.7 |
| MS.gene018581.t1 | MTR_3g016210 | 30.387 | 181 | 112 | 4 | 16 | 187 | 22 | 197 | 1.97e-20 | 93.2 |
| MS.gene018581.t1 | MTR_1g059930 | 30.052 | 193 | 121 | 4 | 4 | 187 | 12 | 199 | 3.26e-20 | 92.8 |
| MS.gene018581.t1 | MTR_8g062410 | 30.612 | 196 | 122 | 3 | 4 | 190 | 10 | 200 | 8.77e-20 | 91.7 |
| MS.gene018581.t1 | MTR_8g039620 | 25.076 | 331 | 215 | 7 | 4 | 325 | 14 | 320 | 1.61e-19 | 90.5 |
| MS.gene018581.t1 | MTR_7g451420 | 30.526 | 190 | 118 | 3 | 7 | 187 | 12 | 196 | 1.34e-18 | 86.7 |
| MS.gene018581.t1 | MTR_8g066670 | 23.280 | 378 | 244 | 12 | 16 | 378 | 1087 | 1433 | 2.11e-17 | 85.5 |
| MS.gene018581.t1 | MTR_8g467780 | 30.688 | 189 | 117 | 3 | 7 | 186 | 14 | 197 | 8.06e-17 | 82.4 |
| MS.gene018581.t1 | MTR_7g100390 | 30.542 | 203 | 125 | 5 | 2 | 199 | 82 | 273 | 8.46e-17 | 82.8 |
| MS.gene018581.t1 | MTR_3g105650 | 28.571 | 182 | 116 | 3 | 16 | 188 | 17 | 193 | 1.50e-16 | 81.6 |
| MS.gene018581.t1 | MTR_1g032100 | 23.563 | 348 | 238 | 9 | 39 | 382 | 94 | 417 | 1.09e-15 | 79.3 |
| MS.gene018581.t1 | MTR_2g096190 | 30.392 | 204 | 126 | 5 | 2 | 200 | 99 | 291 | 1.81e-15 | 78.6 |
| MS.gene018581.t1 | MTR_4g062100 | 24.501 | 351 | 200 | 8 | 30 | 372 | 133 | 426 | 1.82e-15 | 78.6 |
| MS.gene018581.t1 | MTR_8g105260 | 27.230 | 213 | 143 | 5 | 39 | 250 | 101 | 302 | 3.53e-14 | 74.7 |
| MS.gene018581.t1 | MTR_7g100430 | 23.669 | 338 | 224 | 9 | 39 | 372 | 161 | 468 | 6.23e-14 | 73.9 |
| MS.gene018581.t1 | MTR_7g117620 | 25.195 | 385 | 208 | 11 | 2 | 372 | 114 | 432 | 6.87e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018581.t1 | AT4G10720 | 26.835 | 395 | 248 | 14 | 7 | 380 | 8 | 382 | 3.59e-27 | 112 |
| MS.gene018581.t1 | AT4G10720 | 27.246 | 334 | 213 | 11 | 7 | 330 | 8 | 321 | 2.64e-25 | 107 |
| MS.gene018581.t1 | AT5G51160 | 25.532 | 329 | 215 | 9 | 65 | 377 | 42 | 356 | 2.64e-25 | 107 |
| MS.gene018581.t1 | AT5G54610 | 33.028 | 218 | 133 | 5 | 11 | 220 | 12 | 224 | 2.59e-23 | 101 |
| MS.gene018581.t1 | AT5G54620 | 31.336 | 217 | 135 | 4 | 2 | 209 | 3 | 214 | 7.89e-23 | 100 |
| MS.gene018581.t1 | AT5G15500 | 24.557 | 395 | 248 | 10 | 2 | 380 | 4 | 364 | 1.89e-22 | 99.4 |
| MS.gene018581.t1 | AT1G14480 | 30.097 | 206 | 130 | 5 | 4 | 200 | 5 | 205 | 9.67e-20 | 91.3 |
| MS.gene018581.t1 | AT1G14500 | 28.641 | 206 | 133 | 3 | 4 | 200 | 5 | 205 | 5.40e-19 | 89.0 |
| MS.gene018581.t1 | AT3G12360 | 26.087 | 391 | 240 | 13 | 4 | 383 | 121 | 473 | 1.01e-18 | 89.0 |
| MS.gene018581.t1 | AT3G12360 | 26.087 | 391 | 240 | 13 | 4 | 383 | 133 | 485 | 1.06e-18 | 89.0 |
| MS.gene018581.t1 | AT2G31820 | 26.786 | 392 | 220 | 15 | 4 | 372 | 193 | 540 | 1.41e-18 | 88.6 |
| MS.gene018581.t1 | AT1G14480 | 32.317 | 164 | 102 | 3 | 4 | 163 | 5 | 163 | 3.13e-18 | 86.7 |
| MS.gene018581.t1 | AT3G09550 | 23.773 | 387 | 254 | 12 | 4 | 383 | 154 | 506 | 2.67e-16 | 81.6 |
| MS.gene018581.t1 | AT3G09550 | 23.773 | 387 | 254 | 12 | 4 | 383 | 147 | 499 | 2.94e-16 | 81.3 |
| MS.gene018581.t1 | AT3G09550 | 23.773 | 387 | 254 | 12 | 4 | 383 | 147 | 499 | 2.94e-16 | 81.3 |
| MS.gene018581.t1 | AT5G60070 | 29.524 | 210 | 99 | 6 | 2 | 206 | 106 | 271 | 3.13e-15 | 78.2 |
| MS.gene018581.t1 | AT1G05640 | 26.074 | 349 | 209 | 12 | 39 | 372 | 191 | 505 | 4.47e-15 | 77.8 |
| MS.gene018581.t1 | AT5G50140 | 25.342 | 292 | 180 | 10 | 35 | 306 | 26 | 299 | 1.67e-14 | 75.9 |
| MS.gene018581.t1 | AT5G02620 | 24.041 | 391 | 240 | 15 | 4 | 372 | 60 | 415 | 3.04e-14 | 75.1 |
| MS.gene018581.t1 | AT5G02620 | 24.041 | 391 | 240 | 15 | 4 | 372 | 60 | 415 | 3.04e-14 | 75.1 |
| MS.gene018581.t1 | AT5G02620 | 24.041 | 391 | 240 | 15 | 4 | 372 | 60 | 415 | 3.04e-14 | 75.1 |
| MS.gene018581.t1 | AT1G07710 | 29.279 | 222 | 106 | 6 | 2 | 217 | 99 | 275 | 4.66e-14 | 74.3 |
| MS.gene018581.t1 | AT1G07710 | 29.279 | 222 | 106 | 6 | 2 | 217 | 99 | 275 | 4.66e-14 | 74.3 |
| MS.gene018581.t1 | AT5G54710 | 23.837 | 344 | 214 | 9 | 55 | 382 | 182 | 493 | 5.89e-14 | 74.3 |
| MS.gene018581.t1 | AT5G54710 | 23.837 | 344 | 214 | 9 | 55 | 382 | 227 | 538 | 6.09e-14 | 74.3 |
| MS.gene018581.t1 | AT2G24600 | 25.806 | 248 | 143 | 7 | 38 | 256 | 39 | 274 | 4.81e-11 | 65.1 |
| MS.gene018581.t1 | AT2G24600 | 25.806 | 248 | 143 | 7 | 38 | 256 | 39 | 274 | 4.81e-11 | 65.1 |
| MS.gene018581.t1 | AT2G24600 | 25.600 | 250 | 145 | 7 | 36 | 256 | 37 | 274 | 6.61e-11 | 64.7 |
| MS.gene018581.t1 | AT2G24600 | 25.600 | 250 | 145 | 7 | 36 | 256 | 37 | 274 | 6.61e-11 | 64.7 |
Find 74 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGAGGGTAACAATATTT+TGG | 0.140494 | 7.4:-10824595 | MS.gene018581:CDS |
| TCGCGAATCAAGCAAGTTTC+TGG | 0.144507 | 7.4:+10824846 | None:intergenic |
| TGCACTTATCAACTCCTTAA+TGG | 0.167211 | 7.4:+10824770 | None:intergenic |
| CTCTATGATGCATCATTAAA+AGG | 0.232530 | 7.4:-10825116 | MS.gene018581:CDS |
| ACCCGAATAGTTTCTGTTTC+CGG | 0.272426 | 7.4:+10824744 | None:intergenic |
| TGCATCACTATGTGTGCTTT+TGG | 0.293332 | 7.4:-10823319 | MS.gene018581:CDS |
| GGTTACGCTTGTCCTGATTA+TGG | 0.311723 | 7.4:-10823429 | MS.gene018581:CDS |
| GTAAAGAAGCTATGTGTAAT+GGG | 0.322353 | 7.4:+10825012 | None:intergenic |
| GAAAATCCTCTGCCACACTA+TGG | 0.322481 | 7.4:-10822908 | MS.gene018581:CDS |
| TATCAAACGAGGACAAATTA+AGG | 0.325515 | 7.4:-10824565 | MS.gene018581:intron |
| AGCTCTTAAAGCTTCTGTTT+TGG | 0.341636 | 7.4:+10824178 | None:intergenic |
| TGCCGGAAACAGAAACTATT+CGG | 0.348258 | 7.4:-10824746 | MS.gene018581:CDS |
| CTAGAATTGTGTTCTGGGTT+AGG | 0.351230 | 7.4:-10823083 | MS.gene018581:CDS |
| GAAAACACACAAGTGCAAAA+TGG | 0.355298 | 7.4:+10824695 | None:intergenic |
| AAATAGCTAGAATTGTGTTC+TGG | 0.368470 | 7.4:-10823089 | MS.gene018581:intron |
| TTAGTCCACCGGGCGGTGTT+TGG | 0.379011 | 7.4:-10823473 | MS.gene018581:CDS |
| AAAATGAATTTAAGATAATC+TGG | 0.381714 | 7.4:+10823363 | None:intergenic |
| TAGTCCACCGGGCGGTGTTT+GGG | 0.381761 | 7.4:-10823472 | MS.gene018581:CDS |
| TTACACATAGCTTCTTTACT+TGG | 0.383128 | 7.4:-10825008 | MS.gene018581:CDS |
| CTTCATCTAGCTTCGGCAAA+AGG | 0.398211 | 7.4:-10824906 | MS.gene018581:CDS |
| GTCCTCTCATTACAGCAAAA+TGG | 0.410295 | 7.4:+10824802 | None:intergenic |
| GAAACTCTACTTAGAATTAG+AGG | 0.414613 | 7.4:+10825056 | None:intergenic |
| AGGACGCGTAGGAACCATTA+AGG | 0.421682 | 7.4:-10824784 | MS.gene018581:CDS |
| AATAGCTAGAATTGTGTTCT+GGG | 0.426330 | 7.4:-10823088 | MS.gene018581:intron |
| TTCACATCAGCTGCTAAGTT+GGG | 0.430939 | 7.4:+10824948 | None:intergenic |
| AGTAAAGAAGCTATGTGTAA+TGG | 0.433633 | 7.4:+10825011 | None:intergenic |
| ATCGATGATTGTTGTGGTTG+TGG | 0.434864 | 7.4:+10823906 | None:intergenic |
| TTGTGTTCTGGGTTAGGTCT+AGG | 0.438558 | 7.4:-10823077 | MS.gene018581:CDS |
| TTTAAGAGCTTTATATATGT+TGG | 0.440411 | 7.4:-10824165 | MS.gene018581:CDS |
| CTGCAGTTGTAGGATATGTT+TGG | 0.441485 | 7.4:-10823389 | MS.gene018581:CDS |
| TGTAATGGGGTTTCAGAGAA+TGG | 0.449861 | 7.4:+10825026 | None:intergenic |
| GTTCACATCAGCTGCTAAGT+TGG | 0.450012 | 7.4:+10824947 | None:intergenic |
| ATCTAAGTTAAAAGTAGAAA+AGG | 0.458916 | 7.4:-10823030 | MS.gene018581:intron |
| TTGCCCTCTTCATCTAGCTT+CGG | 0.469951 | 7.4:-10824913 | MS.gene018581:CDS |
| GCCGGAAACAGAAACTATTC+GGG | 0.478264 | 7.4:-10824745 | MS.gene018581:CDS |
| GAAGCAGGAACTGCAGTTGT+AGG | 0.479785 | 7.4:-10823399 | MS.gene018581:CDS |
| TTCATCTAGCTTCGGCAAAA+GGG | 0.485961 | 7.4:-10824905 | MS.gene018581:CDS |
| TCAGTCAGTAATTAGTCCAC+CGG | 0.487845 | 7.4:-10823484 | MS.gene018581:intron |
| AACTGTTGAGGATCATTCCT+TGG | 0.489385 | 7.4:+10824032 | None:intergenic |
| GTATGGCTAGCAAAATCTCT+TGG | 0.489498 | 7.4:+10824134 | None:intergenic |
| TCAAAATGTGTTGAATTGTA+TGG | 0.493536 | 7.4:+10824117 | None:intergenic |
| AAAATCCTCTGCCACACTAT+GGG | 0.517000 | 7.4:-10822907 | MS.gene018581:CDS |
| GGAGTTGATAAGTGCAATGC+CGG | 0.532038 | 7.4:-10824763 | MS.gene018581:CDS |
| TGCTTCCCATAGTGTGGCAG+AGG | 0.532654 | 7.4:+10822902 | None:intergenic |
| GAACAACATTCACAAATCAA+TGG | 0.538302 | 7.4:-10824005 | MS.gene018581:CDS |
| TGGGAAGAAGATACAACAAA+AGG | 0.543938 | 7.4:-10823453 | MS.gene018581:CDS |
| CTCCTCTCATTGATTCAACA+AGG | 0.545286 | 7.4:+10824646 | None:intergenic |
| AACAGAAACTATTCGGGTGA+TGG | 0.549369 | 7.4:-10824739 | MS.gene018581:CDS |
| TCTTCTTCCCAAACACCGCC+CGG | 0.555882 | 7.4:+10823465 | None:intergenic |
| GCCACACTATGGGAAGCACT+TGG | 0.556613 | 7.4:-10822897 | MS.gene018581:CDS |
| TTTGTCTTCTAAAGACAAAG+AGG | 0.558670 | 7.4:-10824610 | MS.gene018581:CDS |
| TCCAAGTGCTTCCCATAGTG+TGG | 0.571682 | 7.4:+10822896 | None:intergenic |
| CAGTCAGTAATTAGTCCACC+GGG | 0.572133 | 7.4:-10823483 | MS.gene018581:CDS |
| TTGTCTTCTAAAGACAAAGA+GGG | 0.575204 | 7.4:-10824609 | MS.gene018581:CDS |
| TTAGATATTTGTGGAGGACG+AGG | 0.576543 | 7.4:+10823047 | None:intergenic |
| GCAGCTGATGTGAACTCAGA+AGG | 0.582169 | 7.4:-10824939 | MS.gene018581:CDS |
| ATGGCTGAGATTGATGATCA+TGG | 0.588724 | 7.4:-10824720 | MS.gene018581:CDS |
| AAACTCTACTTAGAATTAGA+GGG | 0.589124 | 7.4:+10825057 | None:intergenic |
| TCATTTATCGATGATTGTTG+TGG | 0.602451 | 7.4:+10823900 | None:intergenic |
| TTTGCCGAAGCTAGATGAAG+AGG | 0.604364 | 7.4:+10824909 | None:intergenic |
| ATCCTTGTTGAATCAATGAG+AGG | 0.608497 | 7.4:-10824648 | MS.gene018581:CDS |
| TCTGGGTTAGGTCTAGGCGC+AGG | 0.609783 | 7.4:-10823071 | MS.gene018581:CDS |
| CTCATTACAGCAAAATGGAG+AGG | 0.616904 | 7.4:+10824807 | None:intergenic |
| TTGCCGAAGCTAGATGAAGA+GGG | 0.617908 | 7.4:+10824910 | None:intergenic |
| GAAGAAGATACAACAAAAGG+TGG | 0.625546 | 7.4:-10823450 | MS.gene018581:CDS |
| GCTGTAATGAGAGGACGCGT+AGG | 0.625908 | 7.4:-10824795 | MS.gene018581:CDS |
| TTTAACTTAGATATTTGTGG+AGG | 0.636829 | 7.4:+10823041 | None:intergenic |
| TAAAGAAGCTATGTGTAATG+GGG | 0.652798 | 7.4:+10825013 | None:intergenic |
| AAGATCATGTTAACTCACCA+AGG | 0.659607 | 7.4:-10824049 | MS.gene018581:CDS |
| GATGATTGTTGTGGTTGTGG+AGG | 0.661128 | 7.4:+10823909 | None:intergenic |
| TCTTCCCAAACACCGCCCGG+TGG | 0.662288 | 7.4:+10823468 | None:intergenic |
| TGTTGTTCTAGTAACTGTTG+AGG | 0.666844 | 7.4:+10824020 | None:intergenic |
| TTGGATTTAGCTATCAAACG+AGG | 0.710414 | 7.4:-10824576 | MS.gene018581:CDS |
| TCAGTAATTAGTCCACCGGG+CGG | 0.788117 | 7.4:-10823480 | MS.gene018581:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATAAAAGAAAACTACA+AGG | - | chr7.4:10823659-10823678 | MS.gene018581:intron | 15.0% |
| !!! | AAAATGAATTTAAGATAATC+TGG | + | chr7.4:10824642-10824661 | None:intergenic | 15.0% |
| !! | ACTATAAACTTATTATGAAG+AGG | + | chr7.4:10824726-10824745 | None:intergenic | 20.0% |
| !! | ATCCAATTATTCATATGAAA+AGG | + | chr7.4:10823717-10823736 | None:intergenic | 20.0% |
| !! | ATCTAAGTTAAAAGTAGAAA+AGG | - | chr7.4:10824972-10824991 | MS.gene018581:CDS | 20.0% |
| !! | ATTCTATAGAAAATGTGATT+AGG | + | chr7.4:10824828-10824847 | None:intergenic | 20.0% |
| !! | TCATAATAAGTTTATAGTGT+GGG | - | chr7.4:10824728-10824747 | MS.gene018581:CDS | 20.0% |
| !! | TTCATAATAAGTTTATAGTG+TGG | - | chr7.4:10824727-10824746 | MS.gene018581:CDS | 20.0% |
| !! | TTTCAACAACAGATAAATTT+AGG | - | chr7.4:10823468-10823487 | MS.gene018581:CDS | 20.0% |
| !!! | AACCTTTTCATATGAATAAT+TGG | - | chr7.4:10823712-10823731 | MS.gene018581:intron | 20.0% |
| !!! | ACTTTTAACTTAGATATTTG+TGG | + | chr7.4:10824967-10824986 | None:intergenic | 20.0% |
| !!! | TTTAAGAGCTTTATATATGT+TGG | - | chr7.4:10823837-10823856 | MS.gene018581:intron | 20.0% |
| ! | AAACTCTACTTAGAATTAGA+GGG | + | chr7.4:10822948-10822967 | None:intergenic | 25.0% |
| ! | AAAGACAAGAGAACAATTAA+TGG | - | chr7.4:10824464-10824483 | MS.gene018581:intron | 25.0% |
| ! | AACAAATACCTAATAAACCA+AGG | - | chr7.4:10824426-10824445 | MS.gene018581:intron | 25.0% |
| ! | AATAAGATGAAAGTCTATTG+TGG | - | chr7.4:10823560-10823579 | MS.gene018581:intron | 25.0% |
| ! | ATTCATATGAAAAGGTTTCA+AGG | + | chr7.4:10823709-10823728 | None:intergenic | 25.0% |
| ! | TCAAAATGTGTTGAATTGTA+TGG | + | chr7.4:10823888-10823907 | None:intergenic | 25.0% |
| ! | TTCATATGAAAAGGTTTCAA+GGG | + | chr7.4:10823708-10823727 | None:intergenic | 25.0% |
| ! | TTCTATAGAATTCGTGATTT+AGG | - | chr7.4:10824837-10824856 | MS.gene018581:CDS | 25.0% |
| !! | TGTTTTCTATAATCATCTAG+AGG | - | chr7.4:10823323-10823342 | MS.gene018581:CDS | 25.0% |
| !! | TTTAACTTAGATATTTGTGG+AGG | + | chr7.4:10824964-10824983 | None:intergenic | 25.0% |
| !! | TTTTATCTATCCAATAACCT+TGG | + | chr7.4:10824446-10824465 | None:intergenic | 25.0% |
| AAATAGCTAGAATTGTGTTC+TGG | - | chr7.4:10824913-10824932 | MS.gene018581:CDS | 30.0% | |
| AACAACATGAACACAATAGA+TGG | - | chr7.4:10824382-10824401 | MS.gene018581:intron | 30.0% | |
| AAGCTTAAATTGATAGGAGT+TGG | + | chr7.4:10825047-10825066 | None:intergenic | 30.0% | |
| AATAGCTAGAATTGTGTTCT+GGG | - | chr7.4:10824914-10824933 | MS.gene018581:CDS | 30.0% | |
| ACAACATGAACACAATAGAT+GGG | - | chr7.4:10824383-10824402 | MS.gene018581:intron | 30.0% | |
| ACCTAATAAACCAAGGTTAT+TGG | - | chr7.4:10824433-10824452 | MS.gene018581:intron | 30.0% | |
| AGCTTAAATTGATAGGAGTT+GGG | + | chr7.4:10825046-10825065 | None:intergenic | 30.0% | |
| AGTAAAGAAGCTATGTGTAA+TGG | + | chr7.4:10822994-10823013 | None:intergenic | 30.0% | |
| CACATGAAGCTTAAATTGAT+AGG | + | chr7.4:10825053-10825072 | None:intergenic | 30.0% | |
| CTCTATGATGCATCATTAAA+AGG | - | chr7.4:10822886-10822905 | MS.gene018581:CDS | 30.0% | |
| GAAACTCTACTTAGAATTAG+AGG | + | chr7.4:10822949-10822968 | None:intergenic | 30.0% | |
| GAACAACATTCACAAATCAA+TGG | - | chr7.4:10823997-10824016 | MS.gene018581:CDS | 30.0% | |
| GAATGTGTAATTTCTTGTGT+AGG | + | chr7.4:10824279-10824298 | None:intergenic | 30.0% | |
| GTAAAGAAGCTATGTGTAAT+GGG | + | chr7.4:10822993-10823012 | None:intergenic | 30.0% | |
| GTTATATCTTGGTTGGAATT+TGG | - | chr7.4:10824859-10824878 | MS.gene018581:CDS | 30.0% | |
| TAAAGAAGCTATGTGTAATG+GGG | + | chr7.4:10822992-10823011 | None:intergenic | 30.0% | |
| TATCAAACGAGGACAAATTA+AGG | - | chr7.4:10823437-10823456 | MS.gene018581:CDS | 30.0% | |
| TCATTTATCGATGATTGTTG+TGG | + | chr7.4:10824105-10824124 | None:intergenic | 30.0% | |
| TCCAATAACCTTGGTTTATT+AGG | + | chr7.4:10824437-10824456 | None:intergenic | 30.0% | |
| TTACACATAGCTTCTTTACT+TGG | - | chr7.4:10822994-10823013 | MS.gene018581:intron | 30.0% | |
| ! | CAAAGAGGGTAACAATATTT+TGG | - | chr7.4:10823407-10823426 | MS.gene018581:CDS | 30.0% |
| ! | CTTTTAATGATGCATCATAG+AGG | + | chr7.4:10822888-10822907 | None:intergenic | 30.0% |
| ! | GATTTAGGTTATATCTTGGT+TGG | - | chr7.4:10824852-10824871 | MS.gene018581:CDS | 30.0% |
| ! | GCATATGCAAATGTAGTTTT+TGG | + | chr7.4:10825024-10825043 | None:intergenic | 30.0% |
| ! | TAAGTTTATAGTGTGGGTTT+TGG | - | chr7.4:10824734-10824753 | MS.gene018581:CDS | 30.0% |
| ! | TATGTTGCTTACATACATGT+GGG | - | chr7.4:10824785-10824804 | MS.gene018581:CDS | 30.0% |
| ! | TCGTGATTTAGGTTATATCT+TGG | - | chr7.4:10824848-10824867 | MS.gene018581:CDS | 30.0% |
| ! | TTAGAATTAGAGGGTCTTTT+TGG | + | chr7.4:10822939-10822958 | None:intergenic | 30.0% |
| ! | TTGTCTTCTAAAGACAAAGA+GGG | - | chr7.4:10823393-10823412 | MS.gene018581:CDS | 30.0% |
| ! | TTTGTCTTCTAAAGACAAAG+AGG | - | chr7.4:10823392-10823411 | MS.gene018581:CDS | 30.0% |
| !! | TAAGCTTCATGTGTTGATTT+AGG | - | chr7.4:10825060-10825079 | MS.gene018581:CDS | 30.0% |
| AAGATCATGTTAACTCACCA+AGG | - | chr7.4:10823953-10823972 | MS.gene018581:CDS | 35.0% | |
| AGTTGTAGAGGATGACTAAT+CGG | + | chr7.4:10824153-10824172 | None:intergenic | 35.0% | |
| ATCCTTGTTGAATCAATGAG+AGG | - | chr7.4:10823354-10823373 | MS.gene018581:CDS | 35.0% | |
| GAAAACACACAAGTGCAAAA+TGG | + | chr7.4:10823310-10823329 | None:intergenic | 35.0% | |
| GAAATTACACATTCATCACC+AGG | - | chr7.4:10824285-10824304 | MS.gene018581:intron | 35.0% | |
| GAAGAAGATACAACAAAAGG+TGG | - | chr7.4:10824552-10824571 | MS.gene018581:intron | 35.0% | |
| GCTTCACAAAAACCATAATC+AGG | + | chr7.4:10824588-10824607 | None:intergenic | 35.0% | |
| TGCACTTATCAACTCCTTAA+TGG | + | chr7.4:10823235-10823254 | None:intergenic | 35.0% | |
| TGGGAAGAAGATACAACAAA+AGG | - | chr7.4:10824549-10824568 | MS.gene018581:intron | 35.0% | |
| TGTTGTTCATTAGCTATGCT+TGG | + | chr7.4:10824369-10824388 | None:intergenic | 35.0% | |
| TGTTGTTCTAGTAACTGTTG+AGG | + | chr7.4:10823985-10824004 | None:intergenic | 35.0% | |
| TTCATGAAAGAGAGTCATGT+AGG | + | chr7.4:10825001-10825020 | None:intergenic | 35.0% | |
| TTGGATTTAGCTATCAAACG+AGG | - | chr7.4:10823426-10823445 | MS.gene018581:CDS | 35.0% | |
| ! | AGCTCTTAAAGCTTCTGTTT+TGG | + | chr7.4:10823827-10823846 | None:intergenic | 35.0% |
| ! | GATTATGGTTTTTGTGAAGC+AGG | - | chr7.4:10824588-10824607 | MS.gene018581:CDS | 35.0% |
| ! | GTATGTTGCTTACATACATG+TGG | - | chr7.4:10824784-10824803 | MS.gene018581:CDS | 35.0% |
| ! | TTTTGTGGAGGATCATTGTT+TGG | + | chr7.4:10824048-10824067 | None:intergenic | 35.0% |
| !! | GAAGGATTTGTTAGTTGTAG+AGG | + | chr7.4:10824165-10824184 | None:intergenic | 35.0% |
| !! | TCTTAAAGCTTCTGTTTTGG+AGG | + | chr7.4:10823824-10823843 | None:intergenic | 35.0% |
| !!! | TGTGATGGTTGTTGATTTTG+TGG | + | chr7.4:10824063-10824082 | None:intergenic | 35.0% |
| AAAATCCTCTGCCACACTAT+GGG | - | chr7.4:10825095-10825114 | MS.gene018581:CDS | 40.0% | |
| AACAGAAACTATTCGGGTGA+TGG | - | chr7.4:10823263-10823282 | MS.gene018581:intron | 40.0% | |
| AACTGTTGAGGATCATTCCT+TGG | + | chr7.4:10823973-10823992 | None:intergenic | 40.0% | |
| ACCCGAATAGTTTCTGTTTC+CGG | + | chr7.4:10823261-10823280 | None:intergenic | 40.0% | |
| AGTCTATTGTGGCAGATAGA+AGG | - | chr7.4:10823571-10823590 | MS.gene018581:intron | 40.0% | |
| ATCGATGATTGTTGTGGTTG+TGG | + | chr7.4:10824099-10824118 | None:intergenic | 40.0% | |
| ATGAACACAATAGATGGGAC+AGG | - | chr7.4:10824388-10824407 | MS.gene018581:intron | 40.0% | |
| CTCATTACAGCAAAATGGAG+AGG | + | chr7.4:10823198-10823217 | None:intergenic | 40.0% | |
| CTGCAGTTGTAGGATATGTT+TGG | - | chr7.4:10824613-10824632 | MS.gene018581:CDS | 40.0% | |
| CTTACATACATGTGGGCATT+GGG | - | chr7.4:10824792-10824811 | MS.gene018581:CDS | 40.0% | |
| GGTGGTTATGAAGGACTATT+GGG | + | chr7.4:10824192-10824211 | None:intergenic | 40.0% | |
| GTATGGCTAGCAAAATCTCT+TGG | + | chr7.4:10823871-10823890 | None:intergenic | 40.0% | |
| GTCCTCTCATTACAGCAAAA+TGG | + | chr7.4:10823203-10823222 | None:intergenic | 40.0% | |
| TCAGTCAGTAATTAGTCCAC+CGG | - | chr7.4:10824518-10824537 | MS.gene018581:intron | 40.0% | |
| TCTTGTGTAGGATCATTGTG+TGG | + | chr7.4:10824267-10824286 | None:intergenic | 40.0% | |
| TGAACACAATAGATGGGACA+GGG | - | chr7.4:10824389-10824408 | MS.gene018581:intron | 40.0% | |
| TGCCGGAAACAGAAACTATT+CGG | - | chr7.4:10823256-10823275 | MS.gene018581:intron | 40.0% | |
| TGGTGGTTATGAAGGACTAT+TGG | + | chr7.4:10824193-10824212 | None:intergenic | 40.0% | |
| TTAGATATTTGTGGAGGACG+AGG | + | chr7.4:10824958-10824977 | None:intergenic | 40.0% | |
| TTCACATCAGCTGCTAAGTT+GGG | + | chr7.4:10823057-10823076 | None:intergenic | 40.0% | |
| ! | ATGGCTGAGATTGATGATCA+TGG | - | chr7.4:10823282-10823301 | MS.gene018581:intron | 40.0% |
| ! | CTAGAATTGTGTTCTGGGTT+AGG | - | chr7.4:10824919-10824938 | MS.gene018581:CDS | 40.0% |
| ! | GATTGGACTAGAGTTACTTG+AGG | + | chr7.4:10824129-10824148 | None:intergenic | 40.0% |
| ! | GGAGGATCAATGTTTTGTGA+TGG | + | chr7.4:10824078-10824097 | None:intergenic | 40.0% |
| ! | TGCATCACTATGTGTGCTTT+TGG | - | chr7.4:10824683-10824702 | MS.gene018581:CDS | 40.0% |
| ! | TGTAATGGGGTTTCAGAGAA+TGG | + | chr7.4:10822979-10822998 | None:intergenic | 40.0% |
| ! | TTCATCTAGCTTCGGCAAAA+GGG | - | chr7.4:10823097-10823116 | MS.gene018581:intron | 40.0% |
| ! | TTGTGAGATGGTGGTTATGA+AGG | + | chr7.4:10824201-10824220 | None:intergenic | 40.0% |
| !! | CTCCATTTTGCTGTAATGAG+AGG | - | chr7.4:10823198-10823217 | MS.gene018581:intron | 40.0% |
| !! | CTCCTCTCATTGATTCAACA+AGG | + | chr7.4:10823359-10823378 | None:intergenic | 40.0% |
| !! | GTTTATAGTGTGGGTTTTGG+CGG | - | chr7.4:10824737-10824756 | MS.gene018581:CDS | 40.0% |
| !! | TCATTAGCTATGCTTGGTGT+TGG | + | chr7.4:10824363-10824382 | None:intergenic | 40.0% |
| !!! | GATGGTTGTTGATTTTGTGG+AGG | + | chr7.4:10824060-10824079 | None:intergenic | 40.0% |
| CAGTCAGTAATTAGTCCACC+GGG | - | chr7.4:10824519-10824538 | MS.gene018581:intron | 45.0% | |
| GAAAATCCTCTGCCACACTA+TGG | - | chr7.4:10825094-10825113 | MS.gene018581:CDS | 45.0% | |
| GAGGATGACTAATCGGTGAT+TGG | + | chr7.4:10824146-10824165 | None:intergenic | 45.0% | |
| GATGATTGTTGTGGTTGTGG+AGG | + | chr7.4:10824096-10824115 | None:intergenic | 45.0% | |
| GATGGTGATTGTGGATGTTG+AGG | + | chr7.4:10824243-10824262 | None:intergenic | 45.0% | |
| GCCGGAAACAGAAACTATTC+GGG | - | chr7.4:10823257-10823276 | MS.gene018581:intron | 45.0% | |
| GCTTACATACATGTGGGCAT+TGG | - | chr7.4:10824791-10824810 | MS.gene018581:CDS | 45.0% | |
| GGTTACGCTTGTCCTGATTA+TGG | - | chr7.4:10824573-10824592 | MS.gene018581:CDS | 45.0% | |
| GGTTATGAAGGACTATTGGG+TGG | + | chr7.4:10824189-10824208 | None:intergenic | 45.0% | |
| GTAGGATCATTGTGTGGTGA+TGG | + | chr7.4:10824261-10824280 | None:intergenic | 45.0% | |
| GTTAGTGAGGGATTGTGAGA+TGG | + | chr7.4:10824213-10824232 | None:intergenic | 45.0% | |
| GTTCACATCAGCTGCTAAGT+TGG | + | chr7.4:10823058-10823077 | None:intergenic | 45.0% | |
| TCGCGAATCAAGCAAGTTTC+TGG | + | chr7.4:10823159-10823178 | None:intergenic | 45.0% | |
| TTGCCGAAGCTAGATGAAGA+GGG | + | chr7.4:10823095-10823114 | None:intergenic | 45.0% | |
| TTGTGGATGTTGAGGCTCAT+TGG | + | chr7.4:10824235-10824254 | None:intergenic | 45.0% | |
| TTTGCCGAAGCTAGATGAAG+AGG | + | chr7.4:10823096-10823115 | None:intergenic | 45.0% | |
| ! | CTTCATCTAGCTTCGGCAAA+AGG | - | chr7.4:10823096-10823115 | MS.gene018581:intron | 45.0% |
| ! | GTGGCAGAGGATTTTCAGAA+AGG | + | chr7.4:10825090-10825109 | None:intergenic | 45.0% |
| ! | TGAGGCTCATTGGTTAGTGA+GGG | + | chr7.4:10824225-10824244 | None:intergenic | 45.0% |
| ! | TTGAGGCTCATTGGTTAGTG+AGG | + | chr7.4:10824226-10824245 | None:intergenic | 45.0% |
| ! | TTGCCCTCTTCATCTAGCTT+CGG | - | chr7.4:10823089-10823108 | MS.gene018581:intron | 45.0% |
| ! | TTGTGTTCTGGGTTAGGTCT+AGG | - | chr7.4:10824925-10824944 | MS.gene018581:CDS | 45.0% |
| !! | CTATGCTTGGTGTTGGTGAA+GGG | + | chr7.4:10824356-10824375 | None:intergenic | 45.0% |
| !! | GGAGTTGATAAGTGCAATGC+CGG | - | chr7.4:10823239-10823258 | MS.gene018581:intron | 45.0% |
| !! | TTGTGTGGTGATGGTGATTG+TGG | + | chr7.4:10824252-10824271 | None:intergenic | 45.0% |
| !!! | GTGCTTTTGGTTCTCGTAAG+TGG | - | chr7.4:10824696-10824715 | MS.gene018581:CDS | 45.0% |
| AGGACGCGTAGGAACCATTA+AGG | - | chr7.4:10823218-10823237 | MS.gene018581:intron | 50.0% | |
| AGTGAGGGATTGTGAGATGG+TGG | + | chr7.4:10824210-10824229 | None:intergenic | 50.0% | |
| GAAGCAGGAACTGCAGTTGT+AGG | - | chr7.4:10824603-10824622 | MS.gene018581:CDS | 50.0% | |
| GAAGGACTATTGGGTGGTGA+AGG | + | chr7.4:10824183-10824202 | None:intergenic | 50.0% | |
| GCAGCTGATGTGAACTCAGA+AGG | - | chr7.4:10823063-10823082 | MS.gene018581:CDS | 50.0% | |
| GTGGTGGTTGTAGAGGATTG+AGG | + | chr7.4:10824311-10824330 | None:intergenic | 50.0% | |
| TCAGTAATTAGTCCACCGGG+CGG | - | chr7.4:10824522-10824541 | MS.gene018581:intron | 50.0% | |
| TCCAAGTGCTTCCCATAGTG+TGG | + | chr7.4:10825109-10825128 | None:intergenic | 50.0% | |
| ! | TCACTTGGTGAGAATGGTGG+TGG | + | chr7.4:10824330-10824349 | None:intergenic | 50.0% |
| ! | TCGTCACTTGGTGAGAATGG+TGG | + | chr7.4:10824333-10824352 | None:intergenic | 50.0% |
| !! | AATGGTGGTGGTGGTTGTAG+AGG | + | chr7.4:10824318-10824337 | None:intergenic | 50.0% |
| !! | GCTATGCTTGGTGTTGGTGA+AGG | + | chr7.4:10824357-10824376 | None:intergenic | 50.0% |
| GCTGTAATGAGAGGACGCGT+AGG | - | chr7.4:10823207-10823226 | MS.gene018581:intron | 55.0% | |
| GGTTGTAGAGGATTGAGGCC+TGG | + | chr7.4:10824306-10824325 | None:intergenic | 55.0% | |
| TCTTCTTCCCAAACACCGCC+CGG | + | chr7.4:10824540-10824559 | None:intergenic | 55.0% | |
| TGCTTCCCATAGTGTGGCAG+AGG | + | chr7.4:10825103-10825122 | None:intergenic | 55.0% | |
| ! | GGGTCGTCACTTGGTGAGAA+TGG | + | chr7.4:10824336-10824355 | None:intergenic | 55.0% |
| ! | GTTGGTGAAGGGTCGTCACT+TGG | + | chr7.4:10824345-10824364 | None:intergenic | 55.0% |
| !! | CTTGGTGAGAATGGTGGTGG+TGG | + | chr7.4:10824327-10824346 | None:intergenic | 55.0% |
| !! | GCCACACTATGGGAAGCACT+TGG | - | chr7.4:10825105-10825124 | MS.gene018581:CDS | 55.0% |
| TAGTCCACCGGGCGGTGTTT+GGG | - | chr7.4:10824530-10824549 | MS.gene018581:intron | 60.0% | |
| TTAGTCCACCGGGCGGTGTT+TGG | - | chr7.4:10824529-10824548 | MS.gene018581:intron | 60.0% | |
| ! | TCTGGGTTAGGTCTAGGCGC+AGG | - | chr7.4:10824931-10824950 | MS.gene018581:CDS | 60.0% |
| TCTTCCCAAACACCGCCCGG+TGG | + | chr7.4:10824537-10824556 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 10822877 | 10825147 | 10822877 | ID=MS.gene018581 |
| chr7.4 | mRNA | 10822877 | 10825147 | 10822877 | ID=MS.gene018581.t1;Parent=MS.gene018581 |
| chr7.4 | exon | 10824566 | 10825147 | 10824566 | ID=MS.gene018581.t1.exon1;Parent=MS.gene018581.t1 |
| chr7.4 | CDS | 10824566 | 10825147 | 10824566 | ID=cds.MS.gene018581.t1;Parent=MS.gene018581.t1 |
| chr7.4 | exon | 10823893 | 10824252 | 10823893 | ID=MS.gene018581.t1.exon2;Parent=MS.gene018581.t1 |
| chr7.4 | CDS | 10823893 | 10824252 | 10823893 | ID=cds.MS.gene018581.t1;Parent=MS.gene018581.t1 |
| chr7.4 | exon | 10823314 | 10823502 | 10823314 | ID=MS.gene018581.t1.exon3;Parent=MS.gene018581.t1 |
| chr7.4 | CDS | 10823314 | 10823502 | 10823314 | ID=cds.MS.gene018581.t1;Parent=MS.gene018581.t1 |
| chr7.4 | exon | 10823031 | 10823105 | 10823031 | ID=MS.gene018581.t1.exon4;Parent=MS.gene018581.t1 |
| chr7.4 | CDS | 10823031 | 10823105 | 10823031 | ID=cds.MS.gene018581.t1;Parent=MS.gene018581.t1 |
| chr7.4 | exon | 10822877 | 10822942 | 10822877 | ID=MS.gene018581.t1.exon5;Parent=MS.gene018581.t1 |
| chr7.4 | CDS | 10822877 | 10822942 | 10822877 | ID=cds.MS.gene018581.t1;Parent=MS.gene018581.t1 |
| Gene Sequence |
| Protein sequence |
