Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019390.t1 | XP_024629174.1 | 95.9 | 1189 | 48 | 1 | 1 | 1188 | 1 | 1189 | 0.00E+00 | 2082 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019390.t1 | F4K1G2 | 55.1 | 1057 | 436 | 9 | 143 | 1181 | 2 | 1037 | 2.9e-269 | 929.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019390.t1 | G7LCR6 | 95.8 | 1189 | 49 | 1 | 1 | 1188 | 1 | 1189 | 0.0e+00 | 2080.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019390 | MS.gene037122 | PPI |
| MS.gene019390 | MS.gene08876 | PPI |
| MS.gene019390 | MS.gene065345 | PPI |
| MS.gene019390 | MS.gene025293 | PPI |
| MS.gene019390 | MS.gene057442 | PPI |
| MS.gene019390 | MS.gene08628 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019390.t1 | MTR_8g035620 | 95.711 | 1189 | 50 | 1 | 1 | 1188 | 1 | 1189 | 0.0 | 2325 |
| MS.gene019390.t1 | MTR_4g011790 | 23.333 | 540 | 342 | 18 | 117 | 618 | 83 | 588 | 2.78e-19 | 94.0 |
| MS.gene019390.t1 | MTR_4g013210 | 21.514 | 502 | 303 | 15 | 146 | 621 | 113 | 549 | 1.19e-17 | 88.6 |
| MS.gene019390.t1 | MTR_2g105570 | 24.547 | 497 | 310 | 17 | 145 | 616 | 80 | 536 | 1.49e-16 | 85.1 |
| MS.gene019390.t1 | MTR_4g013210 | 21.875 | 480 | 313 | 14 | 146 | 593 | 113 | 562 | 1.04e-15 | 82.4 |
| MS.gene019390.t1 | MTR_4g128337 | 22.288 | 507 | 333 | 17 | 130 | 616 | 70 | 535 | 6.25e-15 | 79.7 |
| MS.gene019390.t1 | MTR_1g090737 | 22.649 | 521 | 345 | 13 | 117 | 622 | 82 | 559 | 1.79e-13 | 75.1 |
| MS.gene019390.t1 | MTR_3g460770 | 22.970 | 505 | 314 | 18 | 142 | 621 | 79 | 533 | 3.77e-11 | 67.8 |
| MS.gene019390.t1 | MTR_8g039720 | 20.622 | 611 | 348 | 15 | 44 | 616 | 35 | 546 | 4.73e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019390.t1 | AT5G35930 | 49.916 | 1192 | 505 | 12 | 8 | 1181 | 12 | 1129 | 0.0 | 1140 |
| MS.gene019390.t1 | AT5G35930 | 52.696 | 1057 | 461 | 9 | 143 | 1181 | 2 | 1037 | 0.0 | 1096 |
| MS.gene019390.t1 | AT5G35930 | 51.581 | 917 | 413 | 8 | 283 | 1181 | 1 | 904 | 0.0 | 939 |
| MS.gene019390.t1 | AT5G35930 | 51.581 | 917 | 413 | 8 | 283 | 1181 | 1 | 904 | 0.0 | 939 |
| MS.gene019390.t1 | AT3G16170 | 23.346 | 514 | 324 | 16 | 142 | 624 | 129 | 603 | 4.77e-21 | 99.8 |
| MS.gene019390.t1 | AT1G51680 | 23.752 | 501 | 311 | 17 | 144 | 616 | 91 | 548 | 5.70e-13 | 73.6 |
| MS.gene019390.t1 | AT1G20480 | 21.862 | 494 | 328 | 13 | 142 | 616 | 98 | 552 | 1.08e-11 | 69.7 |
| MS.gene019390.t1 | AT1G20510 | 22.798 | 386 | 243 | 10 | 256 | 625 | 194 | 540 | 1.31e-11 | 69.3 |
| MS.gene019390.t1 | AT1G30520 | 19.792 | 384 | 267 | 8 | 258 | 619 | 179 | 543 | 2.81e-11 | 68.2 |
| MS.gene019390.t1 | AT1G30520 | 19.792 | 384 | 267 | 8 | 258 | 619 | 179 | 543 | 2.81e-11 | 68.2 |
Find 252 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACGATGATTTCTTTATTA+TGG | 0.141918 | 8.2:+63689349 | MS.gene019390:CDS |
| TGCACATGTTGCTCACAATT+TGG | 0.144000 | 8.2:+63689391 | MS.gene019390:CDS |
| TCAAATGTTGATCTCATTAT+AGG | 0.163314 | 8.2:+63679726 | MS.gene019390:CDS |
| CAAAACATCAACTTTATCTT+TGG | 0.189693 | 8.2:-63689606 | None:intergenic |
| TCTTCTGCAACTTATTAAAA+AGG | 0.202078 | 8.2:+63688313 | MS.gene019390:CDS |
| TGGTGGTTCTTGCATATTTA+GGG | 0.217227 | 8.2:+63687767 | MS.gene019390:CDS |
| TCCCTTCTAAGCGCTTAAAA+AGG | 0.228455 | 8.2:+63689630 | MS.gene019390:CDS |
| GTAGAATTGCCTCAAAATTA+TGG | 0.232014 | 8.2:+63687828 | MS.gene019390:CDS |
| TTGGTGGTTCTTGCATATTT+AGG | 0.240857 | 8.2:+63687766 | MS.gene019390:CDS |
| AACTGCAATGTAGTGCTTAT+TGG | 0.245488 | 8.2:+63687708 | MS.gene019390:CDS |
| TGTTATCTGATGTATACTTC+TGG | 0.251820 | 8.2:+63679921 | MS.gene019390:CDS |
| ACTACATTGCAGTTAGTAAT+TGG | 0.256218 | 8.2:-63687699 | None:intergenic |
| ATCCTTTCGTTTGGCCAAAA+AGG | 0.259106 | 8.2:-63679684 | None:intergenic |
| ACAACAACTGGGTGAGTTAT+TGG | 0.265149 | 8.2:+63688109 | MS.gene019390:CDS |
| TTCTCTTCGCCTTTGATGAT+TGG | 0.269906 | 8.2:+63694977 | MS.gene019390:CDS |
| CATTGGCTGACCAAGTTCTT+TGG | 0.271013 | 8.2:-63689784 | None:intergenic |
| GACGATGATTTCTTTATTAT+GGG | 0.271108 | 8.2:+63689350 | MS.gene019390:CDS |
| CAACGTTGTATTCCCATATT+AGG | 0.271890 | 8.2:-63694674 | None:intergenic |
| AGTTAGGGGAAGTAGAATTT+TGG | 0.273186 | 8.2:-63677906 | None:intergenic |
| TGGGGAAGCCTTCTTGCCTT+TGG | 0.281399 | 8.2:+63679659 | MS.gene019390:CDS |
| AGGAAAAGGGAGACCTAATA+TGG | 0.289445 | 8.2:+63694661 | MS.gene019390:intron |
| GTGAAGTCTTGGTTGGAGTT+AGG | 0.289600 | 8.2:-63677922 | None:intergenic |
| AGAGCCATACAAAGCTTAAA+AGG | 0.296937 | 8.2:-63689449 | None:intergenic |
| GCACATGTTGCTCACAATTT+GGG | 0.301184 | 8.2:+63689392 | MS.gene019390:CDS |
| CATGTTGCTTTGGAATTTCA+AGG | 0.306316 | 8.2:-63695048 | None:intergenic |
| GATCGTGCTCTTTGCATAAT+AGG | 0.309303 | 8.2:+63689486 | MS.gene019390:CDS |
| TCATGTGGAGGCAGTATATA+CGG | 0.309480 | 8.2:+63692388 | MS.gene019390:CDS |
| ACATAAGCAGATGCAGTAAT+TGG | 0.315627 | 8.2:-63694702 | None:intergenic |
| TCAATGGAGTATCTTAAAAC+AGG | 0.321054 | 8.2:-63679825 | None:intergenic |
| ATTTGCGTTTGTTCTAGTTC+TGG | 0.322067 | 8.2:+63694851 | MS.gene019390:CDS |
| AATGAAGATGATGAGAATAT+TGG | 0.322353 | 8.2:-63689707 | None:intergenic |
| ACAAATTCTCAACTTCTTCC+AGG | 0.326568 | 8.2:-63687989 | None:intergenic |
| ATATAAATTCCCACCATGTT+TGG | 0.329965 | 8.2:-63679588 | None:intergenic |
| CGTCTAAGCTCTATCCTTCA+TGG | 0.330397 | 8.2:+63678051 | MS.gene019390:CDS |
| GATATTTCACGATGCTTTGC+TGG | 0.330880 | 8.2:+63689310 | MS.gene019390:intron |
| TTAGTAATTGGTAAACCTAT+TGG | 0.335883 | 8.2:-63687687 | None:intergenic |
| AGTTCCCGTGTTTGGTTCTC+TGG | 0.337364 | 8.2:+63693488 | MS.gene019390:CDS |
| GAGGTCACATGAAGAGCTTT+TGG | 0.337985 | 8.2:+63689822 | MS.gene019390:CDS |
| ATCATCCAACTTCTGATTGC+AGG | 0.344242 | 8.2:-63688134 | None:intergenic |
| ATGTAGTTCTTCAACAGATT+TGG | 0.345560 | 8.2:+63679863 | MS.gene019390:CDS |
| TGCAGGCTTATTCTGTTAAT+AGG | 0.351603 | 8.2:+63686455 | MS.gene019390:intron |
| AAAACATCAACTTTATCTTT+GGG | 0.352795 | 8.2:-63689605 | None:intergenic |
| ATCCCAACGGATCCATAGTT+TGG | 0.353140 | 8.2:+63693653 | MS.gene019390:CDS |
| ATTGAAGGACAAACAACAAC+TGG | 0.358221 | 8.2:+63688097 | MS.gene019390:CDS |
| ACTTCATACCTTCCAAACTA+TGG | 0.360142 | 8.2:-63693665 | None:intergenic |
| TCAGATTTGTATTTATTCAT+TGG | 0.366412 | 8.2:+63689899 | MS.gene019390:CDS |
| TCAGCTTGAGTTTGCAATAC+AGG | 0.368163 | 8.2:-63686514 | None:intergenic |
| TTCTAAAGTATAATTCGCTT+TGG | 0.368841 | 8.2:-63687875 | None:intergenic |
| TGAAGTCTTGGTTGGAGTTA+GGG | 0.369997 | 8.2:-63677921 | None:intergenic |
| GTTTGCAAAACTTAAGTTGC+CGG | 0.372347 | 8.2:+63694946 | MS.gene019390:CDS |
| AAGTTCAAGATTGATGTCTT+TGG | 0.375075 | 8.2:-63686625 | None:intergenic |
| ACATCAATCTTGAACTTATA+CGG | 0.377822 | 8.2:+63686631 | MS.gene019390:CDS |
| TTGCTTTATGTGGCCTCTAC+TGG | 0.378514 | 8.2:+63692534 | MS.gene019390:CDS |
| AAATGAACTTTCAGTATGAT+TGG | 0.379983 | 8.2:-63689561 | None:intergenic |
| CAAATGTTGATCTCATTATA+GGG | 0.383247 | 8.2:+63679727 | MS.gene019390:CDS |
| ATGTATACTTCTGGATCATC+TGG | 0.385691 | 8.2:+63679930 | MS.gene019390:CDS |
| ACAGCAGCATCATTTATATC+TGG | 0.385749 | 8.2:-63688023 | None:intergenic |
| ATGCACGGCCCAGCAAATAT+TGG | 0.386740 | 8.2:-63693782 | None:intergenic |
| ATGTGACCTCTGCTTCCTCT+TGG | 0.387104 | 8.2:-63689809 | None:intergenic |
| AGTAGCCACAGTATACTAAA+TGG | 0.387924 | 8.2:-63693456 | None:intergenic |
| AGAAGTTGAGAATTTGTTAA+GGG | 0.393739 | 8.2:+63687995 | MS.gene019390:CDS |
| ATCGCCGTCATCCACGCTTC+CGG | 0.394712 | 8.2:+63677865 | MS.gene019390:CDS |
| ACCGACAGTATCCTTTCGTT+TGG | 0.395319 | 8.2:-63679693 | None:intergenic |
| AAATAGAGCTGAGAAATTCT+TGG | 0.400519 | 8.2:-63686218 | None:intergenic |
| TGCAACAAGGTGTTGTATAA+AGG | 0.400733 | 8.2:+63689737 | MS.gene019390:CDS |
| TGAAGCCTTTATAATATTGA+AGG | 0.403942 | 8.2:+63688082 | MS.gene019390:CDS |
| GTTTGGCTTATACTCTTCAA+TGG | 0.404417 | 8.2:-63679571 | None:intergenic |
| GTATTTCTGTAGGTGGTTGT+TGG | 0.407551 | 8.2:+63690647 | MS.gene019390:intron |
| TAAAGTTAATTATGAGTTGT+TGG | 0.407754 | 8.2:+63688229 | MS.gene019390:CDS |
| TTCTCTGCATAAATGTTAGA+AGG | 0.410240 | 8.2:+63689939 | MS.gene019390:CDS |
| CGCCTTTGATGATTGGTGGC+CGG | 0.416074 | 8.2:+63694984 | MS.gene019390:CDS |
| ATGCTAACAAGTGTTCCAAT+AGG | 0.417652 | 8.2:+63687672 | MS.gene019390:CDS |
| GAATTAGAAGTTCCCGTGTT+TGG | 0.417682 | 8.2:+63693480 | MS.gene019390:CDS |
| ACATATAGCTCACCCTCATT+TGG | 0.419521 | 8.2:-63687744 | None:intergenic |
| TTTGTCCTTCAATATTATAA+AGG | 0.420000 | 8.2:-63688087 | None:intergenic |
| TTCTCTCAGTATTGAGGTGT+GGG | 0.422096 | 8.2:+63679640 | MS.gene019390:CDS |
| TTTGTAATCGAGAGCGTATA+AGG | 0.422883 | 8.2:-63692341 | None:intergenic |
| ACTGGTGGTCCAATATTTGC+TGG | 0.430984 | 8.2:+63693773 | MS.gene019390:CDS |
| TTCATTTAGTAAAAGTAACT+TGG | 0.433523 | 8.2:+63679758 | MS.gene019390:CDS |
| AGCGAATTATACTTTAGAAC+TGG | 0.434992 | 8.2:+63687879 | MS.gene019390:CDS |
| AAGAAGTTGAGAATTTGTTA+AGG | 0.435328 | 8.2:+63687994 | MS.gene019390:CDS |
| GGTTCTACAGATGTTACATC+AGG | 0.442750 | 8.2:+63689653 | MS.gene019390:CDS |
| CATTGGCTGGTAAAGTCAAT+TGG | 0.445741 | 8.2:+63679798 | MS.gene019390:CDS |
| CCCTACAACCAACGAAAATC+CGG | 0.446019 | 8.2:-63695003 | None:intergenic |
| TCTGCTTCCTCTTGGAACAT+TGG | 0.446930 | 8.2:-63689801 | None:intergenic |
| GGGGAGATGAACCGTTTCCT+TGG | 0.449126 | 8.2:+63689675 | MS.gene019390:CDS |
| GTAATATGTTGCTTGGTAGA+TGG | 0.451515 | 8.2:+63693613 | MS.gene019390:intron |
| TCTGAATAGCTCCCTCTTCA+CGG | 0.453593 | 8.2:-63679497 | None:intergenic |
| GGTGGTTGTTGGATGTTACA+TGG | 0.454753 | 8.2:+63690658 | MS.gene019390:intron |
| GACTAAGAGTGTCAAGGATA+AGG | 0.456371 | 8.2:+63688268 | MS.gene019390:CDS |
| TAGTAACAAGTTACCTTGTT+CGG | 0.457261 | 8.2:-63679976 | None:intergenic |
| TAAAGGACAAACTTCTGTAA+TGG | 0.458077 | 8.2:+63689754 | MS.gene019390:CDS |
| TTGGGCTTGCGGTGGCTGTT+CGG | 0.458325 | 8.2:-63677837 | None:intergenic |
| TCACCCATGGTTGTGTCTAA+AGG | 0.458560 | 8.2:+63689875 | MS.gene019390:CDS |
| GTGCTTGTATGCTGCAGAAA+TGG | 0.463373 | 8.2:+63694087 | MS.gene019390:CDS |
| TCTGTAAAGATGAAACGGTT+GGG | 0.471349 | 8.2:-63688182 | None:intergenic |
| TCTTCGCCTTTGATGATTGG+TGG | 0.471373 | 8.2:+63694980 | MS.gene019390:CDS |
| TCGGTGCCACACACTCCTTT+AGG | 0.473423 | 8.2:-63679957 | None:intergenic |
| TAATGTTTCATGTAGGTTCG+TGG | 0.475670 | 8.2:+63692510 | MS.gene019390:intron |
| GCGGGAAAGGTTGGCGACGC+CGG | 0.479474 | 8.2:-63677884 | None:intergenic |
| TGTCTGCATGTGTCTACAAC+TGG | 0.481950 | 8.2:-63691246 | None:intergenic |
| GTGGTAGAACGGAGGGGAGG+TGG | 0.482047 | 8.2:-63677971 | None:intergenic |
| CTGAAATTGCTTGTGCTAAG+TGG | 0.484593 | 8.2:+63686556 | MS.gene019390:CDS |
| TTGCCGTTCTCTCAGTATTG+AGG | 0.487254 | 8.2:+63679634 | MS.gene019390:CDS |
| GACCGTATTGTAAAAGTCCA+TGG | 0.487416 | 8.2:+63687954 | MS.gene019390:CDS |
| TGGATACACACCAAAGAACT+TGG | 0.495820 | 8.2:+63689774 | MS.gene019390:CDS |
| CTTCCAAACTATGGATCCGT+TGG | 0.496439 | 8.2:-63693656 | None:intergenic |
| AATGTATCCTTTGACGGGGC+AGG | 0.496532 | 8.2:+63686152 | MS.gene019390:CDS |
| GGAAGGGAATTCCAAGGAAA+CGG | 0.497424 | 8.2:-63689686 | None:intergenic |
| TTGGATCAACACCAGGAAAA+GGG | 0.497594 | 8.2:+63694648 | MS.gene019390:intron |
| CAAGGAATGTATCCTTTGAC+GGG | 0.497665 | 8.2:+63686147 | MS.gene019390:CDS |
| CAAATTCTCAACTTCTTCCA+GGG | 0.501763 | 8.2:-63687988 | None:intergenic |
| ATGATTCTGTAAAGATGAAA+CGG | 0.503789 | 8.2:-63688187 | None:intergenic |
| AAATTCACCTCATCAATTGC+AGG | 0.504489 | 8.2:-63692415 | None:intergenic |
| GTGCTCTTTGCATAATAGGT+TGG | 0.507192 | 8.2:+63689490 | MS.gene019390:CDS |
| TTTGGAATGGACACATCTGT+TGG | 0.508610 | 8.2:+63690702 | MS.gene019390:CDS |
| TTCTGTAAAGATGAAACGGT+TGG | 0.512342 | 8.2:-63688183 | None:intergenic |
| GCAAGGAATGTATCCTTTGA+CGG | 0.512914 | 8.2:+63686146 | MS.gene019390:CDS |
| ATTTCTTCCTTCAAAACCAA+TGG | 0.515072 | 8.2:-63687651 | None:intergenic |
| GTTTAGTGGTTCTATGCAGT+GGG | 0.519242 | 8.2:+63690510 | MS.gene019390:intron |
| GCTTGATGAATCGCATTGGC+TGG | 0.519654 | 8.2:+63679785 | MS.gene019390:CDS |
| GTGGTTGTTGGATGTTACAT+GGG | 0.522213 | 8.2:+63690659 | MS.gene019390:CDS |
| GTTCTTCAACAGATTTGGCC+TGG | 0.523446 | 8.2:+63679868 | MS.gene019390:CDS |
| CACATGTTGCTCACAATTTG+GGG | 0.523615 | 8.2:+63689393 | MS.gene019390:CDS |
| GAACGGTCACCGTGGTAGAA+CGG | 0.528096 | 8.2:-63677982 | None:intergenic |
| AACTTTACCGCTAGAAGAGA+CGG | 0.529418 | 8.2:-63688213 | None:intergenic |
| AGCTGAGAAATTCTTGGAGG+TGG | 0.531962 | 8.2:-63686212 | None:intergenic |
| TTTGCAAAACTTAAGTTGCC+GGG | 0.532524 | 8.2:+63694947 | MS.gene019390:CDS |
| TTCCAAACTATGGATCCGTT+GGG | 0.532594 | 8.2:-63693655 | None:intergenic |
| CAGTGGGAGATCAAACTAGA+AGG | 0.532734 | 8.2:+63690526 | MS.gene019390:CDS |
| GCCAATGCGATTCATCAAGC+TGG | 0.532840 | 8.2:-63679782 | None:intergenic |
| GGATCATCTGGAAAGCCTAA+AGG | 0.534315 | 8.2:+63679942 | MS.gene019390:CDS |
| CCATGGGCAGCGTATTGCCC+TGG | 0.537977 | 8.2:+63687971 | MS.gene019390:CDS |
| GGTTCGTGGATTGCTTTATG+TGG | 0.538084 | 8.2:+63692524 | MS.gene019390:intron |
| ACACATGCAGACAATTGATC+TGG | 0.539094 | 8.2:+63691256 | MS.gene019390:CDS |
| GGAGTGTGTGGCACCGAACA+AGG | 0.541690 | 8.2:+63679963 | MS.gene019390:CDS |
| GGTTTAGTGGTTCTATGCAG+TGG | 0.546050 | 8.2:+63690509 | MS.gene019390:intron |
| AGATGGAGATGTTCTTGCAT+TGG | 0.547170 | 8.2:+63693630 | MS.gene019390:CDS |
| GGTTGGCGACGCCGGAAGCG+TGG | 0.549572 | 8.2:-63677876 | None:intergenic |
| GTAAGAGCGTGGTGAAGTCT+TGG | 0.551534 | 8.2:-63677933 | None:intergenic |
| TGCGTTTGTTCTAGTTCTGG+AGG | 0.552984 | 8.2:+63694854 | MS.gene019390:CDS |
| GATGGTGTCCACCGTGAAGA+GGG | 0.553102 | 8.2:+63679486 | MS.gene019390:CDS |
| TGGTACCTGCAATCAGAAGT+TGG | 0.554293 | 8.2:+63688129 | MS.gene019390:CDS |
| CTGCTGTTCCATCACTGATA+CGG | 0.555097 | 8.2:+63686482 | MS.gene019390:CDS |
| AGAATTGTCCGTATCAGTGA+TGG | 0.557261 | 8.2:-63686490 | None:intergenic |
| AATAGCTCCTGCCCCGTCAA+AGG | 0.557321 | 8.2:-63686159 | None:intergenic |
| AGCGTCTCCCACAAGGTGAA+AGG | 0.558893 | 8.2:-63686589 | None:intergenic |
| ATGTTGCTTTGGAATTTCAA+GGG | 0.559770 | 8.2:-63695047 | None:intergenic |
| ATCAAAATATGTACAATCGC+CGG | 0.559965 | 8.2:-63687616 | None:intergenic |
| TTGTGTTGATGCTTCACCCA+TGG | 0.560130 | 8.2:+63689862 | MS.gene019390:CDS |
| GAAGTCTTGGTTGGAGTTAG+GGG | 0.561063 | 8.2:-63677920 | None:intergenic |
| TGATTGCAAGAGGATACCAT+TGG | 0.561160 | 8.2:+63687635 | MS.gene019390:CDS |
| TTCATTTAGCCGCTGCAACA+AGG | 0.562852 | 8.2:+63689724 | MS.gene019390:CDS |
| GAGCGTGGTGAAGTCTTGGT+TGG | 0.563403 | 8.2:-63677929 | None:intergenic |
| GTTGAGAGTAAGTGAAAGAA+CGG | 0.565053 | 8.2:-63677999 | None:intergenic |
| CTGTAAAGATGAAACGGTTG+GGG | 0.566117 | 8.2:-63688181 | None:intergenic |
| AAGATGATGAGAATATTGGA+AGG | 0.566251 | 8.2:-63689703 | None:intergenic |
| AAGTGTGTACTCATTCAAAC+TGG | 0.566453 | 8.2:+63694110 | MS.gene019390:CDS |
| ATACGGTGTTTCTGAGGTCA+TGG | 0.566949 | 8.2:-63677791 | None:intergenic |
| GTTCATTTCCTCTCGAGTCA+AGG | 0.568276 | 8.2:+63689576 | MS.gene019390:CDS |
| AAAAGGATCCAAAGGCAAGA+AGG | 0.568328 | 8.2:-63679667 | None:intergenic |
| GATGATTTCTTTATTATGGG+TGG | 0.568908 | 8.2:+63689353 | MS.gene019390:CDS |
| ATGCCTCTCACACTTCAGAC+AGG | 0.569394 | 8.2:+63694751 | MS.gene019390:CDS |
| TCGTGTGAAATGCAGCAATA+CGG | 0.569742 | 8.2:-63677808 | None:intergenic |
| GTAGTGCTTATTGGTGAAAA+CGG | 0.570737 | 8.2:+63687717 | MS.gene019390:CDS |
| CAACGGATCCATAGTTTGGA+AGG | 0.570864 | 8.2:+63693657 | MS.gene019390:CDS |
| GTTCTCTCAGTATTGAGGTG+TGG | 0.571413 | 8.2:+63679639 | MS.gene019390:CDS |
| TAGAGCTGAGAAATTCTTGG+AGG | 0.571658 | 8.2:-63686215 | None:intergenic |
| TGAAAACGGTGCACCAAATG+AGG | 0.572550 | 8.2:+63687731 | MS.gene019390:CDS |
| CTGGTGGTCCAATATTTGCT+GGG | 0.574719 | 8.2:+63693774 | MS.gene019390:CDS |
| GCAATAATATATTCAACAGA+AGG | 0.575476 | 8.2:-63679615 | None:intergenic |
| GGAAAAGGGAGACCTAATAT+GGG | 0.576972 | 8.2:+63694662 | MS.gene019390:intron |
| CGATGGTGTCCACCGTGAAG+AGG | 0.577409 | 8.2:+63679485 | MS.gene019390:CDS |
| GGTGGTTCTTGCATATTTAG+GGG | 0.580256 | 8.2:+63687768 | MS.gene019390:CDS |
| AAGAGTGTCAAGGATAAGGT+TGG | 0.581057 | 8.2:+63688272 | MS.gene019390:CDS |
| CCAGGGCAATACGCTGCCCA+TGG | 0.582484 | 8.2:-63687971 | None:intergenic |
| ATGGCTCTTCTCCATAAAAG+AGG | 0.582942 | 8.2:+63689464 | MS.gene019390:CDS |
| ACCGTGGTAGAACGGAGGGG+AGG | 0.588826 | 8.2:-63677974 | None:intergenic |
| TCTTTGAGCTCGCTGAAAGG+AGG | 0.589038 | 8.2:-63686264 | None:intergenic |
| TTGTGCAGTAATATGTTGCT+TGG | 0.591644 | 8.2:+63693606 | MS.gene019390:intron |
| GAATCTGATATAATGTCTGA+AGG | 0.592170 | 8.2:+63687801 | MS.gene019390:CDS |
| CTTTATGTGGCCTCTACTGG+TGG | 0.592236 | 8.2:+63692537 | MS.gene019390:CDS |
| GGAATCATCCTTGACTCGAG+AGG | 0.592302 | 8.2:-63689584 | None:intergenic |
| ATCCGGCCACCAATCATCAA+AGG | 0.593741 | 8.2:-63694986 | None:intergenic |
| ACTTTACCGCTAGAAGAGAC+GGG | 0.596083 | 8.2:-63688212 | None:intergenic |
| GACGCCGGAAGCGTGGATGA+CGG | 0.598375 | 8.2:-63677869 | None:intergenic |
| CAATGGAGTATCTTAAAACA+GGG | 0.600426 | 8.2:-63679824 | None:intergenic |
| ACCGTATTGTAAAAGTCCAT+GGG | 0.602878 | 8.2:+63687955 | MS.gene019390:CDS |
| GCGGGTCATGAGCACCATGA+AGG | 0.603683 | 8.2:-63678065 | None:intergenic |
| CATGTGGAGGCAGTATATAC+GGG | 0.604056 | 8.2:+63692389 | MS.gene019390:CDS |
| AATGTTCCAAGAGGAAGCAG+AGG | 0.604714 | 8.2:+63689803 | MS.gene019390:CDS |
| TTTGTTCAGAAAACAACTGG+TGG | 0.604920 | 8.2:+63693758 | MS.gene019390:intron |
| AATATTGGAAGGGAATTCCA+AGG | 0.606207 | 8.2:-63689692 | None:intergenic |
| ATAATATATTCAACAGAAGG+AGG | 0.608760 | 8.2:-63679612 | None:intergenic |
| TAACCTGTCTGAAGTGTGAG+AGG | 0.608810 | 8.2:-63694754 | None:intergenic |
| ACACCTCAATACTGAGAGAA+CGG | 0.611740 | 8.2:-63679637 | None:intergenic |
| GAGTATAAGCCAAACATGGT+GGG | 0.613021 | 8.2:+63679579 | MS.gene019390:CDS |
| GGCGAAGAGAAAATATCCCC+CGG | 0.613716 | 8.2:-63694965 | None:intergenic |
| GACAGCCAGAGAACCAAACA+CGG | 0.614344 | 8.2:-63693493 | None:intergenic |
| ACCAGCTTGATGAATCGCAT+TGG | 0.617253 | 8.2:+63679781 | MS.gene019390:CDS |
| GCCAAACGAAAGGATACTGT+CGG | 0.618676 | 8.2:+63679692 | MS.gene019390:CDS |
| TCATTTCCCGTCTCTTCTAG+CGG | 0.618681 | 8.2:+63688206 | MS.gene019390:CDS |
| GGGAGATCAAACTAGAAGGT+CGG | 0.621823 | 8.2:+63690530 | MS.gene019390:CDS |
| ACCTCCCCTCCGTTCTACCA+CGG | 0.623392 | 8.2:+63677973 | MS.gene019390:CDS |
| GGTCACCGTGGTAGAACGGA+GGG | 0.625253 | 8.2:-63677978 | None:intergenic |
| CTGATCACAGCAAAATCTCA+AGG | 0.625506 | 8.2:+63678090 | MS.gene019390:CDS |
| AGAGAATAATGTACCTCATG+AGG | 0.626171 | 8.2:-63693818 | None:intergenic |
| GCAGCAATACGGTGTTTCTG+AGG | 0.628535 | 8.2:-63677797 | None:intergenic |
| TATTCTACTGTAGGTAACGA+TGG | 0.629199 | 8.2:+63679468 | MS.gene019390:intron |
| AGTTGAAAGCGTCTCCCACA+AGG | 0.630165 | 8.2:-63686596 | None:intergenic |
| ATTATTGACTAAGAGTGTCA+AGG | 0.632202 | 8.2:+63688262 | MS.gene019390:CDS |
| GTCTATAAGCTATCATGTGG+AGG | 0.632709 | 8.2:+63692376 | MS.gene019390:CDS |
| CGGGTCACCTGCAATTGATG+AGG | 0.635477 | 8.2:+63692408 | MS.gene019390:CDS |
| CTAATATGGGAATACAACGT+TGG | 0.637142 | 8.2:+63694675 | MS.gene019390:CDS |
| TTGCAAAACTTAAGTTGCCG+GGG | 0.638621 | 8.2:+63694948 | MS.gene019390:CDS |
| AGAGTATAAGCCAAACATGG+TGG | 0.640249 | 8.2:+63679578 | MS.gene019390:CDS |
| GTTCTTGCATTGGATCCCAA+CGG | 0.640693 | 8.2:+63693640 | MS.gene019390:CDS |
| AGATGATGAGAATATTGGAA+GGG | 0.641649 | 8.2:-63689702 | None:intergenic |
| ACCTTCTGTTAGTCCTCATG+AGG | 0.642499 | 8.2:+63693805 | MS.gene019390:CDS |
| GGAAAGCCTAAAGGAGTGTG+TGG | 0.643239 | 8.2:+63679951 | MS.gene019390:CDS |
| TATACAACACCTTGTTGCAG+CGG | 0.644162 | 8.2:-63689733 | None:intergenic |
| GTTCTACAGATGTTACATCA+GGG | 0.645731 | 8.2:+63689654 | MS.gene019390:CDS |
| GAGGGTGAGCTATATGTTGG+TGG | 0.646643 | 8.2:+63687750 | MS.gene019390:CDS |
| CGGTTGGGGAGCAAAACTGA+TGG | 0.647545 | 8.2:-63688167 | None:intergenic |
| TGGTTGTTGGATGTTACATG+GGG | 0.650491 | 8.2:+63690660 | MS.gene019390:CDS |
| AGTTATACGACCACCAGTAG+AGG | 0.654506 | 8.2:-63692547 | None:intergenic |
| TTCTACAGATGTTACATCAG+GGG | 0.654833 | 8.2:+63689655 | MS.gene019390:CDS |
| AAGAATATAAAATCACCACT+TGG | 0.654911 | 8.2:-63687921 | None:intergenic |
| AACGCGCTGTTGTAAGAGCG+TGG | 0.656791 | 8.2:-63677944 | None:intergenic |
| TCTACAGATGTTACATCAGG+GGG | 0.659806 | 8.2:+63689656 | MS.gene019390:CDS |
| TTGAAGGACAAACAACAACT+GGG | 0.662725 | 8.2:+63688098 | MS.gene019390:CDS |
| TTAGTCAAACAGTTGCCAAG+TGG | 0.664188 | 8.2:+63687906 | MS.gene019390:CDS |
| ACCTCATGAGGACTAACAGA+AGG | 0.664502 | 8.2:-63693806 | None:intergenic |
| GAGCCTTTAGACACAACCAT+GGG | 0.668760 | 8.2:-63689878 | None:intergenic |
| TGCAAAACTTAAGTTGCCGG+GGG | 0.670331 | 8.2:+63694949 | MS.gene019390:CDS |
| TACTGGTGGTCGTATAACTG+CGG | 0.670403 | 8.2:+63692551 | MS.gene019390:CDS |
| TGAAGAGTATAAGCCAAACA+TGG | 0.672550 | 8.2:+63679575 | MS.gene019390:CDS |
| GGACTAACAGAAGGTATGCA+CGG | 0.676125 | 8.2:-63693797 | None:intergenic |
| GTTCGCCATTTAGTATACTG+TGG | 0.677406 | 8.2:+63693451 | MS.gene019390:CDS |
| TCTCTCAGTATTGAGGTGTG+GGG | 0.689216 | 8.2:+63679641 | MS.gene019390:CDS |
| AATGAGGGTGAGCTATATGT+TGG | 0.692450 | 8.2:+63687747 | MS.gene019390:CDS |
| ACAGCCAGAGAACCAAACAC+GGG | 0.692734 | 8.2:-63693492 | None:intergenic |
| GTCACCGTGGTAGAACGGAG+GGG | 0.693227 | 8.2:-63677977 | None:intergenic |
| TGGTCAGCCAATGTTCCAAG+AGG | 0.693641 | 8.2:+63689794 | MS.gene019390:CDS |
| TGTGTCTATAAGCTATCATG+TGG | 0.697084 | 8.2:+63692373 | MS.gene019390:CDS |
| CGGTCACCGTGGTAGAACGG+AGG | 0.697995 | 8.2:-63677979 | None:intergenic |
| GAAAACGGTGCACCAAATGA+GGG | 0.699761 | 8.2:+63687732 | MS.gene019390:CDS |
| TGAGCCTTTAGACACAACCA+TGG | 0.707759 | 8.2:-63689879 | None:intergenic |
| GAACTTATACGGAAGTACCG+AGG | 0.710928 | 8.2:+63686642 | MS.gene019390:CDS |
| AAGGAATGTATCCTTTGACG+GGG | 0.723446 | 8.2:+63686148 | MS.gene019390:CDS |
| GAATAGCTCCCTCTTCACGG+TGG | 0.729692 | 8.2:-63679494 | None:intergenic |
| AAGTGAAAGAACGGTCACCG+TGG | 0.752740 | 8.2:-63677990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 63677793 | 63695078 | 63677793 | ID=MS.gene019390 |
| chr8.2 | mRNA | 63677793 | 63695078 | 63677793 | ID=MS.gene019390.t1;Parent=MS.gene019390 |
| chr8.2 | exon | 63677793 | 63678111 | 63677793 | ID=MS.gene019390.t1.exon1;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63677793 | 63678111 | 63677793 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63679481 | 63679984 | 63679481 | ID=MS.gene019390.t1.exon2;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63679481 | 63679984 | 63679481 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63686121 | 63686317 | 63686121 | ID=MS.gene019390.t1.exon3;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63686121 | 63686317 | 63686121 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63686460 | 63686663 | 63686460 | ID=MS.gene019390.t1.exon4;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63686460 | 63686663 | 63686460 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63687612 | 63688334 | 63687612 | ID=MS.gene019390.t1.exon5;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63687612 | 63688334 | 63687612 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63689311 | 63689960 | 63689311 | ID=MS.gene019390.t1.exon6;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63689311 | 63689960 | 63689311 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63690516 | 63690591 | 63690516 | ID=MS.gene019390.t1.exon7;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63690516 | 63690591 | 63690516 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63690659 | 63690745 | 63690659 | ID=MS.gene019390.t1.exon8;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63690659 | 63690745 | 63690659 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63691234 | 63691277 | 63691234 | ID=MS.gene019390.t1.exon9;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63691234 | 63691277 | 63691234 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63692321 | 63692429 | 63692321 | ID=MS.gene019390.t1.exon10;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63692321 | 63692429 | 63692321 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63692525 | 63692584 | 63692525 | ID=MS.gene019390.t1.exon11;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63692525 | 63692584 | 63692525 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63693450 | 63693531 | 63693450 | ID=MS.gene019390.t1.exon12;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63693450 | 63693531 | 63693450 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63693614 | 63693678 | 63693614 | ID=MS.gene019390.t1.exon13;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63693614 | 63693678 | 63693614 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63693767 | 63693826 | 63693767 | ID=MS.gene019390.t1.exon14;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63693767 | 63693826 | 63693767 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63694087 | 63694131 | 63694087 | ID=MS.gene019390.t1.exon15;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63694087 | 63694131 | 63694087 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63694663 | 63694772 | 63694663 | ID=MS.gene019390.t1.exon16;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63694663 | 63694772 | 63694663 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| chr8.2 | exon | 63694847 | 63695078 | 63694847 | ID=MS.gene019390.t1.exon17;Parent=MS.gene019390.t1 |
| chr8.2 | CDS | 63694847 | 63695078 | 63694847 | ID=cds.MS.gene019390.t1;Parent=MS.gene019390.t1 |
| Gene Sequence |
| Protein sequence |
