AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020418


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020418.t1 MTR_8g027395 69.521 397 114 4 9 404 7 397 0.0 543
MS.gene020418.t1 MTR_3g101010 71.576 387 108 2 18 404 5 389 0.0 538
MS.gene020418.t1 MTR_3g018740 69.409 389 113 4 15 402 3 386 0.0 528
MS.gene020418.t1 MTR_4g045707 66.667 387 125 4 18 404 6 388 0.0 508
MS.gene020418.t1 MTR_3g101030 61.634 404 133 5 19 404 30 429 3.08e-171 486
MS.gene020418.t1 MTR_8g027420 64.948 388 119 4 17 404 5 375 3.52e-171 483
MS.gene020418.t1 MTR_2g045980 63.918 388 131 4 18 402 5 386 6.45e-170 481
MS.gene020418.t1 MTR_2g046030 63.918 388 131 4 18 402 5 386 7.04e-170 481
MS.gene020418.t1 MTR_8g461160 63.753 389 135 4 18 402 6 392 3.02e-169 479
MS.gene020418.t1 MTR_4g088535 62.887 388 122 4 16 403 5 370 5.43e-168 476
MS.gene020418.t1 MTR_3g101180 61.654 399 141 6 15 403 3 399 9.89e-168 476
MS.gene020418.t1 MTR_3g048000 60.194 412 134 5 1 403 1 391 9.85e-167 473
MS.gene020418.t1 MTR_7g451890 60.199 402 151 5 10 404 3 402 9.15e-166 471
MS.gene020418.t1 MTR_4g088525 65.041 369 119 4 37 403 8 368 2.93e-165 468
MS.gene020418.t1 MTR_7g050750 61.125 391 146 4 18 404 8 396 3.55e-163 464
MS.gene020418.t1 MTR_3g101130 60.204 392 147 4 16 404 4 389 1.89e-162 462
MS.gene020418.t1 MTR_7g047780 59.950 402 152 5 10 404 3 402 4.02e-162 461
MS.gene020418.t1 MTR_7g050810 58.968 407 150 6 9 404 4 404 8.62e-159 453
MS.gene020418.t1 MTR_3g015620 61.084 406 126 6 1 402 1 378 4.71e-158 450
MS.gene020418.t1 MTR_3g101050 62.183 394 124 9 14 402 23 396 4.30e-149 428
MS.gene020418.t1 MTR_3g102920 55.941 404 131 7 10 403 43 409 5.15e-139 403
MS.gene020418.t1 MTR_3g100520 84.234 222 22 1 183 404 1 209 5.67e-132 377
MS.gene020418.t1 MTR_3g101190 54.521 365 101 5 40 404 13 312 2.41e-124 362
MS.gene020418.t1 MTR_3g101200 52.273 396 160 5 10 403 23 391 5.20e-124 364
MS.gene020418.t1 MTR_3g100995 65.759 257 81 4 149 404 14 264 6.32e-118 344
MS.gene020418.t1 MTR_3g100010 52.260 354 111 6 7 320 1 336 6.13e-110 327
MS.gene020418.t1 MTR_7g050830 51.840 326 121 5 9 310 5 318 6.60e-106 315
MS.gene020418.t1 MTR_3g018747 62.977 262 79 4 142 402 9 253 2.16e-104 309
MS.gene020418.t1 MTR_3g015760 55.903 288 107 5 123 402 4 279 8.20e-100 298
MS.gene020418.t1 MTR_3g111160 65.471 223 73 3 183 404 1 220 2.03e-87 265
MS.gene020418.t1 MTR_3g101110 57.322 239 68 4 145 378 71 280 1.85e-84 259
MS.gene020418.t1 MTR_3g114310 41.266 395 211 11 23 404 24 410 2.90e-84 263
MS.gene020418.t1 MTR_2g046410 63.285 207 70 3 199 402 144 347 1.38e-79 249
MS.gene020418.t1 MTR_3g099970 60.101 198 60 3 142 339 20 198 3.38e-78 240
MS.gene020418.t1 MTR_3g111150 57.222 180 49 2 21 198 2 155 8.03e-65 205
MS.gene020418.t1 MTR_3g101020 56.842 190 51 4 216 404 1 160 1.75e-63 201
MS.gene020418.t1 MTR_3g100990 82.677 127 22 0 16 142 3 129 4.79e-62 208
MS.gene020418.t1 MTR_3g102870 65.333 150 50 2 205 354 1 148 8.46e-61 194
MS.gene020418.t1 MTR_3g101150 60.625 160 57 3 248 403 1 158 9.63e-57 184
MS.gene020418.t1 MTR_4g093550 63.095 84 31 0 18 101 6 89 2.50e-27 104
MS.gene020418.t1 MTR_6g046890 57.500 80 24 2 35 104 16 95 8.38e-20 85.5
MS.gene020418.t1 MTR_3g101140 63.768 69 24 1 337 404 48 116 4.72e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020418.t1 AT1G47710 51.680 387 184 3 18 402 5 390 5.14e-141 407
MS.gene020418.t1 AT1G47710 51.680 387 184 3 18 402 32 417 1.90e-140 407
MS.gene020418.t1 AT3G45220 47.328 393 191 6 18 401 5 390 1.78e-124 365
MS.gene020418.t1 AT2G25240 47.165 388 191 7 18 401 5 382 6.80e-119 351
MS.gene020418.t1 AT2G26390 45.844 397 187 9 18 401 5 386 4.94e-115 341
MS.gene020418.t1 AT1G62170 41.221 393 195 7 18 401 66 431 1.66e-102 311
MS.gene020418.t1 AT1G64030 41.795 390 198 6 18 401 5 371 3.62e-99 300
MS.gene020418.t1 AT2G14540 42.821 397 198 7 10 401 25 397 1.80e-97 297
MS.gene020418.t1 AT2G35580 40.196 408 200 10 1 401 1 371 7.32e-97 294
MS.gene020418.t1 AT1G62170 38.028 426 195 8 18 401 66 464 3.20e-95 293
MS.gene020418.t1 AT1G64010 46.364 220 92 5 183 401 1 195 1.43e-58 190
MS.gene020418.t1 AT1G64010 44.660 206 88 5 197 401 1 181 2.96e-50 168
MS.gene020418.t1 AT1G62160 37.333 225 107 6 184 401 21 218 3.36e-32 121
MS.gene020418.t1 AT1G63280 48.696 115 55 2 142 254 8 120 8.96e-31 114
MS.gene020418.t1 AT1G51330 47.748 111 55 2 141 248 30 140 1.60e-25 102
MS.gene020418.t1 AT1G64020 34.783 115 66 4 23 132 10 120 6.83e-14 68.6

Find 97 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCAATGTACTTTAA+AGG 0.146186 3.3:-82938986 MS.gene020418:CDS
GAAAGATTTGTGAAATATAT+TGG 0.220832 3.3:+82938520 None:intergenic
TGATTAAAGAAGTGAATTTA+TGG 0.223064 3.3:-82939087 MS.gene020418:CDS
TCATCTTCGCCTTGATTATA+AGG 0.237108 3.3:+82938818 None:intergenic
TCCAATAAACCGTTTCTTAT+AGG 0.238320 3.3:+82938871 None:intergenic
GAGTAATAATTTCTTTAATA+AGG 0.258043 3.3:+82939044 None:intergenic
GTTAGGTTGTTGACTGAATT+TGG 0.264199 3.3:+82939022 None:intergenic
TCCTATAAGAAACGGTTTAT+TGG 0.267830 3.3:-82938872 MS.gene020418:CDS
TGACGGAGCTACCATTTAAA+AGG 0.273055 3.3:+82938912 None:intergenic
CCAAGATTCAATATTTCGTT+TGG 0.303904 3.3:-82938653 MS.gene020418:CDS
TGCATTTGCAAATATGAGTT+TGG 0.309749 3.3:+82939000 None:intergenic
GTTGAGATGGTCAGTGGATT+TGG 0.313863 3.3:+82940447 None:intergenic
CTATCTGATGCTGCTTCTTC+CGG 0.324419 3.3:-82940394 MS.gene020418:CDS
AAACTTCTCTAATTAGAAAT+AGG 0.325707 3.3:+82938384 None:intergenic
GAAATATATTGGAAACATAT+AGG 0.348298 3.3:+82938531 None:intergenic
TATGAAAACATACCTTGTTC+TGG 0.356984 3.3:+82940254 None:intergenic
TCCCACGCAACAACAGCTTC+TGG 0.368338 3.3:-82940482 MS.gene020418:CDS
GTCAACTTTGGTTGAGAAGC+TGG 0.373900 3.3:-82938747 MS.gene020418:CDS
GAAGGAAGGTTGAAGAGAAA+TGG 0.376988 3.3:+82940327 None:intergenic
CTCTTTCATCCAAGGTGTGT+GGG 0.385352 3.3:-82940359 MS.gene020418:CDS
GATTAAAGAAGTGAATTTAT+GGG 0.386003 3.3:-82939086 MS.gene020418:CDS
ATTAGCCACAATTTCTTTGA+AGG 0.395580 3.3:+82940309 None:intergenic
CAAGATTCAATATTTCGTTT+GGG 0.400361 3.3:-82938652 MS.gene020418:CDS
GGAAACTTTGGTTTGGTTGG+TGG 0.403182 3.3:+82940612 None:intergenic
GACAGTCCATCCTTTGCATC+TGG 0.405033 3.3:+82938767 None:intergenic
CAGGTGCTCAATCCTCTTGT+TGG 0.408553 3.3:-82938335 MS.gene020418:CDS
CTTTGTCTTCCTTATAATCA+AGG 0.415705 3.3:-82938827 MS.gene020418:CDS
CCTCATGGCTGCTGCCTCTG+AGG 0.417264 3.3:-82940506 MS.gene020418:CDS
CCATGAGGCTGAGCGTAACT+TGG 0.418916 3.3:+82940521 None:intergenic
TCCGTTTGTTGATTGATTCA+CGG 0.423037 3.3:+82940662 None:intergenic
ACCGGAACAATCCTCTTTGT+TGG 0.428785 3.3:-82938359 MS.gene020418:CDS
GAAAGAGAGGCGAGGCCCGC+CGG 0.429775 3.3:+82940375 None:intergenic
GACCATGGTAAGGGAAACTT+TGG 0.431672 3.3:+82940600 None:intergenic
AACAATCCTCTTTGTTGGGC+AGG 0.435386 3.3:-82938354 MS.gene020418:CDS
CTCATGGCTGCTGCCTCTGA+GGG 0.435904 3.3:-82940505 MS.gene020418:CDS
TTGCAAATATGAGTTTGGTT+AGG 0.436046 3.3:+82939005 None:intergenic
AAGGGAAACTTTGGTTTGGT+TGG 0.440125 3.3:+82940609 None:intergenic
CCGGAACAATCCTCTTTGTT+GGG 0.441601 3.3:-82938358 MS.gene020418:CDS
CCAAACGAAATATTGAATCT+TGG 0.448102 3.3:+82938653 None:intergenic
TAATGATTATAAAGCCACTT+TGG 0.450703 3.3:-82940290 MS.gene020418:CDS
CACTTCTTTAATCACTTCAC+TGG 0.457017 3.3:+82939096 None:intergenic
TTCATTGAAGTAAATGAAGA+AGG 0.457204 3.3:-82938500 MS.gene020418:CDS
CCGTTTGTTGATTGATTCAC+GGG 0.460807 3.3:+82940663 None:intergenic
ACTGATACGATGAAGGAGTT+AGG 0.462036 3.3:-82938620 MS.gene020418:CDS
CCCAACAAAGAGGATTGTTC+CGG 0.470616 3.3:+82938358 None:intergenic
CGGAAGAAGCAGCATCAGAT+AGG 0.486728 3.3:+82940395 None:intergenic
AGAGATGTTTGACCATGGTA+AGG 0.494445 3.3:+82940590 None:intergenic
TTTCTTATAGGAGGTCATGA+AGG 0.498012 3.3:+82938883 None:intergenic
TGGTAAGGGAAACTTTGGTT+TGG 0.501909 3.3:+82940605 None:intergenic
ACCTTCCTTCAAAGAAATTG+TGG 0.502391 3.3:-82940314 MS.gene020418:CDS
CCTCGCCTCTCTTTCATCCA+AGG 0.508325 3.3:-82940367 MS.gene020418:CDS
GTAAAACCTCCAGAAGAGAA+AGG 0.510977 3.3:+82938587 None:intergenic
GCCACAATTTCTTTGAAGGA+AGG 0.512461 3.3:+82940313 None:intergenic
AATAAACCGTTTCTTATAGG+AGG 0.518982 3.3:+82938874 None:intergenic
CCCGTGAATCAATCAACAAA+CGG 0.520413 3.3:-82940663 MS.gene020418:CDS
CAATGTACTTTAAAGGAACA+TGG 0.522199 3.3:-82938979 MS.gene020418:CDS
TCATGACCTCCTATAAGAAA+CGG 0.525564 3.3:-82938880 MS.gene020418:CDS
TCTCTTTCATCCAAGGTGTG+TGG 0.526400 3.3:-82940360 MS.gene020418:CDS
TTTCTTCCAGATGCAAAGGA+TGG 0.531417 3.3:-82938773 MS.gene020418:CDS
GACTGAGAAGTTTGATACTT+CGG 0.537810 3.3:-82938957 MS.gene020418:CDS
TCTGATGCTGCTTCTTCCGG+CGG 0.542664 3.3:-82940391 MS.gene020418:CDS
TTCAGTTGATTTCCAGAACA+AGG 0.543538 3.3:-82940266 MS.gene020418:intron
TTTGATCAACCCACACACCT+TGG 0.549446 3.3:+82940350 None:intergenic
GAATTTATGGGCTGAAGAAG+AGG 0.549526 3.3:-82939074 MS.gene020418:CDS
TTCTTATAGGAGGTCATGAA+GGG 0.550790 3.3:+82938884 None:intergenic
CTGATGCTGCTTCTTCCGGC+GGG 0.551412 3.3:-82940390 MS.gene020418:CDS
TCCAGAAGCTGTTGTTGCGT+GGG 0.552353 3.3:+82940481 None:intergenic
GTCCAGAAGCTGTTGTTGCG+TGG 0.552957 3.3:+82940480 None:intergenic
AAAGGATGGACTGTCAACTT+TGG 0.555822 3.3:-82938759 MS.gene020418:CDS
CCAAGTTACGCTCAGCCTCA+TGG 0.556554 3.3:-82940521 MS.gene020418:CDS
GGAAACAAGATGAGAGGCGA+TGG 0.556903 3.3:+82940423 None:intergenic
GGTCATGAAGGGAACTTTGA+CGG 0.559017 3.3:+82938895 None:intergenic
TGGGCTGAAGAAGAGGCAAA+TGG 0.561310 3.3:-82939067 MS.gene020418:CDS
AGCAGCATCAGATAGGATGA+TGG 0.563820 3.3:+82940402 None:intergenic
CTAATTAGAGAAGTTTCGAC+CGG 0.568701 3.3:-82938377 MS.gene020418:CDS
GAAGTTTGATACTTCGGTAA+CGG 0.571905 3.3:-82938951 MS.gene020418:CDS
GAGAGGCGATGGAGTTGAGA+TGG 0.573677 3.3:+82940434 None:intergenic
GAAATCAACTGAAGCCAAAG+TGG 0.575945 3.3:+82940276 None:intergenic
GGTTGATTCATCGTGAAGGA+CGG 0.577040 3.3:+82940633 None:intergenic
AGTTAAGATCATCCAACAAG+AGG 0.577438 3.3:+82938323 None:intergenic
TGAAACTACTGATACGATGA+AGG 0.578251 3.3:-82938627 MS.gene020418:CDS
GAGATGTTTGACCATGGTAA+GGG 0.580757 3.3:+82940591 None:intergenic
TCTCTAATTAGAAATAGGAA+AGG 0.584531 3.3:+82938389 None:intergenic
GATGGTCAGTGGATTTGGAT+CGG 0.592329 3.3:+82940452 None:intergenic
TTGTTGCGTGGGACCCTCAG+AGG 0.607840 3.3:+82940492 None:intergenic
TGAGCACCTGCCCAACAAAG+AGG 0.624187 3.3:+82938348 None:intergenic
AACCAAAGTTTCCCTTACCA+TGG 0.630609 3.3:-82940602 MS.gene020418:CDS
CCTCAGAGGCAGCAGCCATG+AGG 0.640062 3.3:+82940506 None:intergenic
TGGTGGTTGATTCATCGTGA+AGG 0.640526 3.3:+82940629 None:intergenic
GATGATGGAAACAAGATGAG+AGG 0.645061 3.3:+82940417 None:intergenic
TGAGAAGAGATGTTTGACCA+TGG 0.646563 3.3:+82940585 None:intergenic
ACACACCTTGGATGAAAGAG+AGG 0.656878 3.3:+82940362 None:intergenic
AGCGTAACTTGGAGTGACAG+CGG 0.664638 3.3:+82940532 None:intergenic
GCTACAAAGTCTTCTCGATG+TGG 0.664760 3.3:+82938419 None:intergenic
GGTCAGTGGATTTGGATCGG+AGG 0.671238 3.3:+82940455 None:intergenic
GATGGAGTTGAGATGGTCAG+TGG 0.682782 3.3:+82940441 None:intergenic
CCTTGGATGAAAGAGAGGCG+AGG 0.711185 3.3:+82940367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATCAAAATAAAGAAAT+TGG - chr3.3:82939223-82939242 MS.gene020418:intron 10.0%
!!! TTAATTTGATATGATTTTAA+AGG - chr3.3:82939882-82939901 MS.gene020418:intron 10.0%
!! AAAAAACTAATTATTTGTGA+AGG + chr3.3:82938915-82938934 None:intergenic 15.0%
!! GAGTAATAATTTCTTTAATA+AGG + chr3.3:82939960-82939979 None:intergenic 15.0%
!!! AAAAAACTAATAGTTTGTTA+AGG + chr3.3:82938844-82938863 None:intergenic 15.0%
!!! TTCAAATTTTATAGTACAAA+AGG - chr3.3:82939629-82939648 MS.gene020418:intron 15.0%
!!! TTTTATTTCATAACCTAATT+TGG - chr3.3:82938947-82938966 MS.gene020418:CDS 15.0%
!! AAACTTCTCTAATTAGAAAT+AGG + chr3.3:82940620-82940639 None:intergenic 20.0%
!! AATTAACATGAAATAACATG+AGG + chr3.3:82938803-82938822 None:intergenic 20.0%
!! ATCAGAATATAAAACAATCA+AGG + chr3.3:82939519-82939538 None:intergenic 20.0%
!! ATTAACATGAAATAACATGA+GGG + chr3.3:82938802-82938821 None:intergenic 20.0%
!! GAAAGATTTGTGAAATATAT+TGG + chr3.3:82940484-82940503 None:intergenic 20.0%
!! GAAATATATTGGAAACATAT+AGG + chr3.3:82940473-82940492 None:intergenic 20.0%
!! GATTAAAGAAGTGAATTTAT+GGG - chr3.3:82939915-82939934 MS.gene020418:intron 20.0%
!! GTGAAAATTATGTTAACAAA+AGG - chr3.3:82939796-82939815 MS.gene020418:intron 20.0%
!! TAATACAATGCTAAATTAGT+TGG + chr3.3:82939775-82939794 None:intergenic 20.0%
!! TCAGAATATAAAACAATCAA+GGG + chr3.3:82939518-82939537 None:intergenic 20.0%
!! TGATTAAAGAAGTGAATTTA+TGG - chr3.3:82939914-82939933 MS.gene020418:intron 20.0%
!! TTGTACTATAAAATTTGAAG+AGG + chr3.3:82939628-82939647 None:intergenic 20.0%
!!! AGTGATTTTTACCTTTTAAA+TGG - chr3.3:82940078-82940097 MS.gene020418:intron 20.0%
!!! CTCTAAAATTATTTTAGATG+AGG + chr3.3:82939684-82939703 None:intergenic 20.0%
! AAATAAAGAAATTGGACAGA+TGG - chr3.3:82939231-82939250 MS.gene020418:intron 25.0%
! AATAAAGAAATTGGACAGAT+GGG - chr3.3:82939232-82939251 MS.gene020418:intron 25.0%
! AATAACGTTAGATCCAAATT+AGG + chr3.3:82938963-82938982 None:intergenic 25.0%
! AGCACAAATAATATTTGTGT+TGG - chr3.3:82938993-82939012 MS.gene020418:CDS 25.0%
! ATACACACTATTCAAAATGA+TGG + chr3.3:82939284-82939303 None:intergenic 25.0%
! CAAGATTCAATATTTCGTTT+GGG - chr3.3:82940349-82940368 MS.gene020418:CDS 25.0%
! CTTATTAAAAAAGTGGAAGT+AGG - chr3.3:82940312-82940331 MS.gene020418:CDS 25.0%
! GCTTAAACATATTTGCATAT+TGG - chr3.3:82939136-82939155 MS.gene020418:intron 25.0%
! TAATGATTATAAAGCCACTT+TGG - chr3.3:82938711-82938730 MS.gene020418:CDS 25.0%
! TACACACTATTCAAAATGAT+GGG + chr3.3:82939283-82939302 None:intergenic 25.0%
! TCTCTAATTAGAAATAGGAA+AGG + chr3.3:82940615-82940634 None:intergenic 25.0%
! TCTTCCTCTTATTAAAAAAG+TGG - chr3.3:82940305-82940324 MS.gene020418:CDS 25.0%
! TTAATATATGGAGTGGAAAT+AGG + chr3.3:82938777-82938796 None:intergenic 25.0%
! TTCATTGAAGTAAATGAAGA+AGG - chr3.3:82940501-82940520 MS.gene020418:CDS 25.0%
!! CATTTTGAATAGTGTGTATT+TGG - chr3.3:82939285-82939304 MS.gene020418:intron 25.0%
!! GTATGAATTTGCTTTATATG+CGG - chr3.3:82939310-82939329 MS.gene020418:intron 25.0%
!! TGCTTTGATCAATTTAGAAT+TGG + chr3.3:82939569-82939588 None:intergenic 25.0%
!!! ACTTCCACTTTTTTAATAAG+AGG + chr3.3:82940312-82940331 None:intergenic 25.0%
!!! GGGATGATATTTATTTTGAA+GGG + chr3.3:82939409-82939428 None:intergenic 25.0%
!!! TATAGATGTCATTTTTTCAG+TGG + chr3.3:82939462-82939481 None:intergenic 25.0%
!!! TGGGATGATATTTATTTTGA+AGG + chr3.3:82939410-82939429 None:intergenic 25.0%
AATAAACCGTTTCTTATAGG+AGG + chr3.3:82940130-82940149 None:intergenic 30.0%
ACAAAGGTTTGTCACATATA+TGG + chr3.3:82939595-82939614 None:intergenic 30.0%
ATCTAGAAAACAGAAAGGAT+AGG + chr3.3:82939752-82939771 None:intergenic 30.0%
ATTAGCCACAATTTCTTTGA+AGG + chr3.3:82938695-82938714 None:intergenic 30.0%
CCAAACGAAATATTGAATCT+TGG + chr3.3:82940351-82940370 None:intergenic 30.0%
CCAAGATTCAATATTTCGTT+TGG - chr3.3:82940348-82940367 MS.gene020418:CDS 30.0%
CTTTGTCTTCCTTATAATCA+AGG - chr3.3:82940174-82940193 MS.gene020418:intron 30.0%
GCAAATGCAATGTACTTTAA+AGG - chr3.3:82940015-82940034 MS.gene020418:intron 30.0%
TATGAAAACATACCTTGTTC+TGG + chr3.3:82938750-82938769 None:intergenic 30.0%
TCCAATAAACCGTTTCTTAT+AGG + chr3.3:82940133-82940152 None:intergenic 30.0%
TCCTATAAGAAACGGTTTAT+TGG - chr3.3:82940129-82940148 MS.gene020418:intron 30.0%
TGCATTTGCAAATATGAGTT+TGG + chr3.3:82940004-82940023 None:intergenic 30.0%
TGGGAAAACATTATACATAC+AGG + chr3.3:82939264-82939283 None:intergenic 30.0%
TTGCAAATATGAGTTTGGTT+AGG + chr3.3:82939999-82940018 None:intergenic 30.0%
TTTGAATAGTGTGTATTTGG+AGG - chr3.3:82939288-82939307 MS.gene020418:intron 30.0%
! ACATGAGACCTTAATGTTTT+AGG - chr3.3:82939046-82939065 MS.gene020418:CDS 30.0%
! CAATGTACTTTAAAGGAACA+TGG - chr3.3:82940022-82940041 MS.gene020418:intron 30.0%
! TATTTTTCTTCCAGATGCAA+AGG - chr3.3:82940224-82940243 MS.gene020418:intron 30.0%
!! AACATGAGGGCATTAATATA+TGG + chr3.3:82938789-82938808 None:intergenic 30.0%
!! TCTTTGTTGGAGTTTGTTTT+CGG + chr3.3:82939341-82939360 None:intergenic 30.0%
!! TTCTGGAGGTTTTACAAAAA+TGG - chr3.3:82940422-82940441 MS.gene020418:CDS 30.0%
ACCTTCCTTCAAAGAAATTG+TGG - chr3.3:82938687-82938706 MS.gene020418:CDS 35.0%
ATGCAAATATGTTTAAGCGC+TGG + chr3.3:82939134-82939153 None:intergenic 35.0%
CACTTCTTTAATCACTTCAC+TGG + chr3.3:82939908-82939927 None:intergenic 35.0%
CCAACCAACCTAAAACATTA+AGG + chr3.3:82939057-82939076 None:intergenic 35.0%
CTAATTAGAGAAGTTTCGAC+CGG - chr3.3:82940624-82940643 MS.gene020418:CDS 35.0%
GAAGTTTGATACTTCGGTAA+CGG - chr3.3:82940050-82940069 MS.gene020418:intron 35.0%
GACTGAGAAGTTTGATACTT+CGG - chr3.3:82940044-82940063 MS.gene020418:intron 35.0%
GTTGGATCTAGAAAACAGAA+AGG + chr3.3:82939757-82939776 None:intergenic 35.0%
TCATCTTCGCCTTGATTATA+AGG + chr3.3:82940186-82940205 None:intergenic 35.0%
TCATGACCTCCTATAAGAAA+CGG - chr3.3:82940121-82940140 MS.gene020418:intron 35.0%
TGAAACTACTGATACGATGA+AGG - chr3.3:82940374-82940393 MS.gene020418:CDS 35.0%
TTCTTATAGGAGGTCATGAA+GGG + chr3.3:82940120-82940139 None:intergenic 35.0%
TTTCTTATAGGAGGTCATGA+AGG + chr3.3:82940121-82940140 None:intergenic 35.0%
! ATTTTACCTTTCTCTTCTGG+AGG - chr3.3:82940408-82940427 MS.gene020418:CDS 35.0%
! CGGTTTATTGGAGATTTTGA+TGG - chr3.3:82940141-82940160 MS.gene020418:intron 35.0%
! GGAGGTTTTACAAAAATGGT+GGG - chr3.3:82940426-82940445 MS.gene020418:CDS 35.0%
! GTGATTTTACCTTTCTCTTC+TGG - chr3.3:82940405-82940424 MS.gene020418:CDS 35.0%
! GTTAGGTTGTTGACTGAATT+TGG + chr3.3:82939982-82940001 None:intergenic 35.0%
! TCCGTTTGTTGATTGATTCA+CGG + chr3.3:82938342-82938361 None:intergenic 35.0%
! TGGAGGTTTTACAAAAATGG+TGG - chr3.3:82940425-82940444 MS.gene020418:CDS 35.0%
! TTCAGTTGATTTCCAGAACA+AGG - chr3.3:82938735-82938754 MS.gene020418:CDS 35.0%
!! AAGAGGCGTTTCAATAACAA+AGG + chr3.3:82939611-82939630 None:intergenic 35.0%
!! CTTTGTTGGAGTTTGTTTTC+GGG + chr3.3:82939340-82939359 None:intergenic 35.0%
!! GAGACCTTAATGTTTTAGGT+TGG - chr3.3:82939050-82939069 MS.gene020418:CDS 35.0%
!!! AACAATCAAGGGTGTTCTTT+TGG + chr3.3:82939507-82939526 None:intergenic 35.0%
!!! ACAATCAAGGGTGTTCTTTT+GGG + chr3.3:82939506-82939525 None:intergenic 35.0%
!!! ATAGGAGTTGGTGGTTTTAT+GGG + chr3.3:82939429-82939448 None:intergenic 35.0%
!!! ATGTCATTTTTTCAGTGGTC+AGG + chr3.3:82939457-82939476 None:intergenic 35.0%
!!! CCTTAATGTTTTAGGTTGGT+TGG - chr3.3:82939054-82939073 MS.gene020418:CDS 35.0%
!!! TATAGGAGTTGGTGGTTTTA+TGG + chr3.3:82939430-82939449 None:intergenic 35.0%
AAAGAAATTGGACAGATGGG+TGG - chr3.3:82939235-82939254 MS.gene020418:intron 40.0%
AACCAAAGTTTCCCTTACCA+TGG - chr3.3:82938399-82938418 MS.gene020418:CDS 40.0%
ACTGATACGATGAAGGAGTT+AGG - chr3.3:82940381-82940400 MS.gene020418:CDS 40.0%
AGAGATGTTTGACCATGGTA+AGG + chr3.3:82938414-82938433 None:intergenic 40.0%
ATAGCACACGTTCATGACTT+TGG - chr3.3:82939537-82939556 MS.gene020418:intron 40.0%
CCCGTGAATCAATCAACAAA+CGG - chr3.3:82938338-82938357 MS.gene020418:CDS 40.0%
GAAATCAACTGAAGCCAAAG+TGG + chr3.3:82938728-82938747 None:intergenic 40.0%
GAAGGAAGGTTGAAGAGAAA+TGG + chr3.3:82938677-82938696 None:intergenic 40.0%
GAGATGTTTGACCATGGTAA+GGG + chr3.3:82938413-82938432 None:intergenic 40.0%
GTAAAACCTCCAGAAGAGAA+AGG + chr3.3:82940417-82940436 None:intergenic 40.0%
TGACGGAGCTACCATTTAAA+AGG + chr3.3:82940092-82940111 None:intergenic 40.0%
TGAGAAGAGATGTTTGACCA+TGG + chr3.3:82938419-82938438 None:intergenic 40.0%
TGGTAAGGGAAACTTTGGTT+TGG + chr3.3:82938399-82938418 None:intergenic 40.0%
TTCAGTGGTCAGGTAAGTAT+AGG + chr3.3:82939447-82939466 None:intergenic 40.0%
TTTCTTCCAGATGCAAAGGA+TGG - chr3.3:82940228-82940247 MS.gene020418:intron 40.0%
! CCGTTTGTTGATTGATTCAC+GGG + chr3.3:82938341-82938360 None:intergenic 40.0%
! GAATTTATGGGCTGAAGAAG+AGG - chr3.3:82939927-82939946 MS.gene020418:intron 40.0%
! GCCACAATTTCTTTGAAGGA+AGG + chr3.3:82938691-82938710 None:intergenic 40.0%
! GGTAGAACTTGCTCTAAATC+AGG + chr3.3:82938894-82938913 None:intergenic 40.0%
!! AAAGGATGGACTGTCAACTT+TGG - chr3.3:82940242-82940261 MS.gene020418:intron 40.0%
!! AAGGGAAACTTTGGTTTGGT+TGG + chr3.3:82938395-82938414 None:intergenic 40.0%
!! GAGGGCATTAATATATGGAG+TGG + chr3.3:82938784-82938803 None:intergenic 40.0%
!! GATGATGGAAACAAGATGAG+AGG + chr3.3:82938587-82938606 None:intergenic 40.0%
!! TGAAGGGTGTTGTCCTTTAT+GGG + chr3.3:82939393-82939412 None:intergenic 40.0%
!! TTGAAGGGTGTTGTCCTTTA+TGG + chr3.3:82939394-82939413 None:intergenic 40.0%
!!! AATGGTGGGTTCTTCTTTTG+TGG - chr3.3:82940440-82940459 MS.gene020418:CDS 40.0%
!!! ATGGTGGGTTCTTCTTTTGT+GGG - chr3.3:82940441-82940460 MS.gene020418:CDS 40.0%
!!! CAATCAAGGGTGTTCTTTTG+GGG + chr3.3:82939505-82939524 None:intergenic 40.0%
AACAATCCTCTTTGTTGGGC+AGG - chr3.3:82940647-82940666 MS.gene020418:CDS 45.0%
ACACACCTTGGATGAAAGAG+AGG + chr3.3:82938642-82938661 None:intergenic 45.0%
ACCGGAACAATCCTCTTTGT+TGG - chr3.3:82940642-82940661 MS.gene020418:CDS 45.0%
AGCAGCATCAGATAGGATGA+TGG + chr3.3:82938602-82938621 None:intergenic 45.0%
CAGGTAAGTATAGGAGTTGG+TGG + chr3.3:82939438-82939457 None:intergenic 45.0%
CCCAACAAAGAGGATTGTTC+CGG + chr3.3:82940646-82940665 None:intergenic 45.0%
CCGGAACAATCCTCTTTGTT+GGG - chr3.3:82940643-82940662 MS.gene020418:CDS 45.0%
CCTACGATCAACACCCATAA+AGG - chr3.3:82939377-82939396 MS.gene020418:intron 45.0%
CTCTTTCATCCAAGGTGTGT+GGG - chr3.3:82938642-82938661 MS.gene020418:CDS 45.0%
GACCATGGTAAGGGAAACTT+TGG + chr3.3:82938404-82938423 None:intergenic 45.0%
GATCGTAGGTGTGTCTTTGT+TGG + chr3.3:82939354-82939373 None:intergenic 45.0%
GCGTGTGTGTGTATATAGCA+TGG - chr3.3:82939086-82939105 MS.gene020418:CDS 45.0%
GCTACAAAGTCTTCTCGATG+TGG + chr3.3:82940585-82940604 None:intergenic 45.0%
GGTCAGGTAAGTATAGGAGT+TGG + chr3.3:82939441-82939460 None:intergenic 45.0%
GGTCATGAAGGGAACTTTGA+CGG + chr3.3:82940109-82940128 None:intergenic 45.0%
GTCAACTTTGGTTGAGAAGC+TGG - chr3.3:82940254-82940273 MS.gene020418:intron 45.0%
TCTCTTTCATCCAAGGTGTG+TGG - chr3.3:82938641-82938660 MS.gene020418:CDS 45.0%
TTGATCGTAGGTGTGATCGT+AGG + chr3.3:82939368-82939387 None:intergenic 45.0%
TTTGATCAACCCACACACCT+TGG + chr3.3:82938654-82938673 None:intergenic 45.0%
! CTATCTGATGCTGCTTCTTC+CGG - chr3.3:82938607-82938626 MS.gene020418:CDS 45.0%
! GATGGTCAGTGGATTTGGAT+CGG + chr3.3:82938552-82938571 None:intergenic 45.0%
! GGTTGATTCATCGTGAAGGA+CGG + chr3.3:82938371-82938390 None:intergenic 45.0%
! GTTGAGATGGTCAGTGGATT+TGG + chr3.3:82938557-82938576 None:intergenic 45.0%
! TGGTGGTTGATTCATCGTGA+AGG + chr3.3:82938375-82938394 None:intergenic 45.0%
!! CCTTTATGGGTGTTGATCGT+AGG + chr3.3:82939380-82939399 None:intergenic 45.0%
!! GGAAACTTTGGTTTGGTTGG+TGG + chr3.3:82938392-82938411 None:intergenic 45.0%
!!! TGTTCTTTTGGGGTGAGTAG+TGG + chr3.3:82939495-82939514 None:intergenic 45.0%
!! AAATTATACTTATAAAAATT+TGG + chr3.3:82939205-82939224 None:intergenic 5.0%
AGCGTAACTTGGAGTGACAG+CGG + chr3.3:82938472-82938491 None:intergenic 50.0%
CAGGTGCTCAATCCTCTTGT+TGG - chr3.3:82940666-82940685 MS.gene020418:CDS 50.0%
CGGAAGAAGCAGCATCAGAT+AGG + chr3.3:82938609-82938628 None:intergenic 50.0%
GACAGTCCATCCTTTGCATC+TGG + chr3.3:82940237-82940256 None:intergenic 50.0%
GAGGCGTATGCTAAAGTAGC+AGG + chr3.3:82939665-82939684 None:intergenic 50.0%
GATGGAGTTGAGATGGTCAG+TGG + chr3.3:82938563-82938582 None:intergenic 50.0%
GGAAACAAGATGAGAGGCGA+TGG + chr3.3:82938581-82938600 None:intergenic 50.0%
TCCAGAAGCTGTTGTTGCGT+GGG + chr3.3:82938523-82938542 None:intergenic 50.0%
TGGGCTGAAGAAGAGGCAAA+TGG - chr3.3:82939934-82939953 MS.gene020418:intron 50.0%
CCAAGTTACGCTCAGCCTCA+TGG - chr3.3:82938480-82938499 MS.gene020418:CDS 55.0%
CCATGAGGCTGAGCGTAACT+TGG + chr3.3:82938483-82938502 None:intergenic 55.0%
CCTCGCCTCTCTTTCATCCA+AGG - chr3.3:82938634-82938653 MS.gene020418:CDS 55.0%
CCTTGGATGAAAGAGAGGCG+AGG + chr3.3:82938637-82938656 None:intergenic 55.0%
GAGAGGCGATGGAGTTGAGA+TGG + chr3.3:82938570-82938589 None:intergenic 55.0%
GTCCAGAAGCTGTTGTTGCG+TGG + chr3.3:82938524-82938543 None:intergenic 55.0%
TCCCACGCAACAACAGCTTC+TGG - chr3.3:82938519-82938538 MS.gene020418:CDS 55.0%
TGAGCACCTGCCCAACAAAG+AGG + chr3.3:82940656-82940675 None:intergenic 55.0%
! GGTCAGTGGATTTGGATCGG+AGG + chr3.3:82938549-82938568 None:intergenic 55.0%
! TCTGATGCTGCTTCTTCCGG+CGG - chr3.3:82938610-82938629 MS.gene020418:CDS 55.0%
CTCATGGCTGCTGCCTCTGA+GGG - chr3.3:82938496-82938515 MS.gene020418:CDS 60.0%
TTGTTGCGTGGGACCCTCAG+AGG + chr3.3:82938512-82938531 None:intergenic 60.0%
! CTGATGCTGCTTCTTCCGGC+GGG - chr3.3:82938611-82938630 MS.gene020418:CDS 60.0%
CCTCAGAGGCAGCAGCCATG+AGG + chr3.3:82938498-82938517 None:intergenic 65.0%
CCTCATGGCTGCTGCCTCTG+AGG - chr3.3:82938495-82938514 MS.gene020418:CDS 65.0%
GAAAGAGAGGCGAGGCCCGC+CGG + chr3.3:82938629-82938648 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 82938331 82940692 82938331 ID=MS.gene020418
chr3.3 mRNA 82938331 82940692 82938331 ID=MS.gene020418.t1;Parent=MS.gene020418
chr3.3 exon 82940267 82940692 82940267 ID=MS.gene020418.t1.exon1;Parent=MS.gene020418.t1
chr3.3 CDS 82940267 82940692 82940267 ID=cds.MS.gene020418.t1;Parent=MS.gene020418.t1
chr3.3 exon 82938331 82939119 82938331 ID=MS.gene020418.t1.exon2;Parent=MS.gene020418.t1
chr3.3 CDS 82938331 82939119 82938331 ID=cds.MS.gene020418.t1;Parent=MS.gene020418.t1
Gene Sequence

>MS.gene020418

ATGGCTACCCGTGAATCAATCAACAAACGGAAAAGAACCGTCCTTCACGATGAATCAACCACCAACCAAACCAAAGTTTCCCTTACCATGGTCAAACATCTCTTCTCAAAAGAATCAGACAAGAACGTTGTATTTTCACCGCTGTCACTCCAAGTTACGCTCAGCCTCATGGCTGCTGCCTCTGAGGGTCCCACGCAACAACAGCTTCTGGACTTCCTCCGATCCAAATCCACTGACCATCTCAACTCCATCGCCTCTCATCTTGTTTCCATCATCCTATCTGATGCTGCTTCTTCCGGCGGGCCTCGCCTCTCTTTCATCCAAGGTGTGTGGGTTGATCAAACCATTTCTCTTCAACCTTCCTTCAAAGAAATTGTGGCTAATGATTATAAAGCCACTTTGGCTTCAGTTGATTTCCAGAACAAGGTATGTTTTCATATCTTCCTATTTCCACTCCATATATTAATGCCCTCATGTTATTTCATGTTAATTAATTAATTAAAAGTTCTACCTTAACAAACTATTAGTTTTTTTTTATATATTATTATTTTATTTCATAACCTGATTTAGAGCAAGTTCTACCTTCACAAATAATTAGTTTTTTTTATTATTATTATTTTATTTCATAACCTAATTTGGATCTAACGTTATTCTACATATGAAGCACAAATAATATTTGTGTTGGTTAATCTTAGATGAAGTGTGTGATTCATGAACATGAGACCTTAATGTTTTAGGTTGGTTGGTGTGTGCGTGCGTGTGTGTGTATATAGCATGGTTTAAGAGTGACTTTTTCAATTCCAGCGCTTAAACATATTTGCATATTGGTGTATTAAAAAAGATAAATTTAGTTTGTTACGATATGAAAGTGCCAAATTTTTATAAGTATAATTTTAATCAAAATAAAGAAATTGGACAGATGGGTGGACACCTGTATGTATAATGTTTTCCCATCATTTTGAATAGTGTGTATTTGGAGGTATGAATTTGCTTTATATGCGGAACACCCGAAAACAAACTCCAACAAAGACACACCTACGATCACACCTACGATCAACACCCATAAAGGACAACACCCTTCAAAATAAATATCATCCCATAAAACCACCAACTCCTATACTTACCTGACCACTGAAAAAATGACATCTATAACAATCGTCGCCACTACTCACCCCAAAAGAACACCCTTGATTGTTTTATATTCTGATAGCACACGTTCATGACTTTGGTAATTACCAATTCTAAATTGATCAAAGCAATTCCATATATGTGACAAACCTTTGTTATTGAAACGCCTCTTCAAATTTTATAGTACAAAAGGCATAAACTTTCCTGCTACTTTAGCATACGCCTCATCTAAAATAATTTTAGAGCAACAAGCATTAACTTCTATGAAAACAATTGAGAAATACAACTTTCCTATCCTTTCTGTTTTCTAGATCCAACTAATTTAGCATTGTATTATGTGAAAATTATGTTAACAAAAGGTTAATTTTTTCTATTGAAATACTTGTGAAAATAATTCAACTTATCTATTTACATAACTGATTTTTAATTTGATATGATTTTAAAGGCCAGTGAAGTGATTAAAGAAGTGAATTTATGGGCTGAAGAAGAGGCAAATGGCCTTATTAAAGAAATTATTACTCCAAATTCAGTCAACAACCTAACCAAACTCATATTTGCAAATGCAATGTACTTTAAAGGAACATGGACTGAGAAGTTTGATACTTCGGTAACGGAAGACAGTGATTTTTACCTTTTAAATGGTAGCTCCGTCAAAGTTCCCTTCATGACCTCCTATAAGAAACGGTTTATTGGAGATTTTGATGGTTTTAAAGTTCTTTGTCTTCCTTATAATCAAGGCGAAGATGAGCGTCAATTCTCTATGTATATTTTTCTTCCAGATGCAAAGGATGGACTGTCAACTTTGGTTGAGAAGCTGGCTTCTGAATTTGAGTTACTAGAACACAATCTTCCTCTTATTAAAAAAGTGGAAGTAGGTGAGTTCAAGATTCCAAGATTCAATATTTCGTTTGGGATTGAAACTACTGATACGATGAAGGAGTTAGGAGTGATTTTACCTTTCTCTTCTGGAGGTTTTACAAAAATGGTGGGTTCTTCTTTTGTGGGTAAAAACCTATATGTTTCCAATATATTTCACAAATCTTTCATTGAAGTAAATGAAGAAGGCACTGAAGCTGCTGCATTCACTACTTATACAAATCGCAAATCACACAGAAAGTCATGTCCACATCGAGAAGACTTTGTAGCTGATCATCCTTTCCTATTTCTAATTAGAGAAGTTTCGACCGGAACAATCCTCTTTGTTGGGCAGGTGCTCAATCCTCTTGTTGGATGA

Protein sequence

>MS.gene020418.t1

MATRESINKRKRTVLHDESTTNQTKVSLTMVKHLFSKESDKNVVFSPLSLQVTLSLMAAASEGPTQQQLLDFLRSKSTDHLNSIASHLVSIILSDAASSGGPRLSFIQGVWVDQTISLQPSFKEIVANDYKATLASVDFQNKASEVIKEVNLWAEEEANGLIKEIITPNSVNNLTKLIFANAMYFKGTWTEKFDTSVTEDSDFYLLNGSSVKVPFMTSYKKRFIGDFDGFKVLCLPYNQGEDERQFSMYIFLPDAKDGLSTLVEKLASEFELLEHNLPLIKKVEVGEFKIPRFNISFGIETTDTMKELGVILPFSSGGFTKMVGSSFVGKNLYVSNIFHKSFIEVNEEGTEAAAFTTYTNRKSHRKSCPHREDFVADHPFLFLIREVSTGTILFVGQVLNPLVG