Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020418.t1 | XP_003602973.1 | 71.6 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 1.60E-149 | 539.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020418.t1 | Q9S7T8 | 51.7 | 387 | 184 | 3 | 18 | 402 | 5 | 390 | 3.9e-109 | 396.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020418.t1 | G7J5Q8 | 71.6 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 1.1e-149 | 539.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene020418 | MS.gene045585 | PPI |
MS.gene006610 | MS.gene020418 | PPI |
MS.gene031697 | MS.gene020418 | PPI |
MS.gene020418 | MS.gene065944 | PPI |
MS.gene065945 | MS.gene020418 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020418.t1 | MTR_8g027395 | 69.521 | 397 | 114 | 4 | 9 | 404 | 7 | 397 | 0.0 | 543 |
MS.gene020418.t1 | MTR_3g101010 | 71.576 | 387 | 108 | 2 | 18 | 404 | 5 | 389 | 0.0 | 538 |
MS.gene020418.t1 | MTR_3g018740 | 69.409 | 389 | 113 | 4 | 15 | 402 | 3 | 386 | 0.0 | 528 |
MS.gene020418.t1 | MTR_4g045707 | 66.667 | 387 | 125 | 4 | 18 | 404 | 6 | 388 | 0.0 | 508 |
MS.gene020418.t1 | MTR_3g101030 | 61.634 | 404 | 133 | 5 | 19 | 404 | 30 | 429 | 3.08e-171 | 486 |
MS.gene020418.t1 | MTR_8g027420 | 64.948 | 388 | 119 | 4 | 17 | 404 | 5 | 375 | 3.52e-171 | 483 |
MS.gene020418.t1 | MTR_2g045980 | 63.918 | 388 | 131 | 4 | 18 | 402 | 5 | 386 | 6.45e-170 | 481 |
MS.gene020418.t1 | MTR_2g046030 | 63.918 | 388 | 131 | 4 | 18 | 402 | 5 | 386 | 7.04e-170 | 481 |
MS.gene020418.t1 | MTR_8g461160 | 63.753 | 389 | 135 | 4 | 18 | 402 | 6 | 392 | 3.02e-169 | 479 |
MS.gene020418.t1 | MTR_4g088535 | 62.887 | 388 | 122 | 4 | 16 | 403 | 5 | 370 | 5.43e-168 | 476 |
MS.gene020418.t1 | MTR_3g101180 | 61.654 | 399 | 141 | 6 | 15 | 403 | 3 | 399 | 9.89e-168 | 476 |
MS.gene020418.t1 | MTR_3g048000 | 60.194 | 412 | 134 | 5 | 1 | 403 | 1 | 391 | 9.85e-167 | 473 |
MS.gene020418.t1 | MTR_7g451890 | 60.199 | 402 | 151 | 5 | 10 | 404 | 3 | 402 | 9.15e-166 | 471 |
MS.gene020418.t1 | MTR_4g088525 | 65.041 | 369 | 119 | 4 | 37 | 403 | 8 | 368 | 2.93e-165 | 468 |
MS.gene020418.t1 | MTR_7g050750 | 61.125 | 391 | 146 | 4 | 18 | 404 | 8 | 396 | 3.55e-163 | 464 |
MS.gene020418.t1 | MTR_3g101130 | 60.204 | 392 | 147 | 4 | 16 | 404 | 4 | 389 | 1.89e-162 | 462 |
MS.gene020418.t1 | MTR_7g047780 | 59.950 | 402 | 152 | 5 | 10 | 404 | 3 | 402 | 4.02e-162 | 461 |
MS.gene020418.t1 | MTR_7g050810 | 58.968 | 407 | 150 | 6 | 9 | 404 | 4 | 404 | 8.62e-159 | 453 |
MS.gene020418.t1 | MTR_3g015620 | 61.084 | 406 | 126 | 6 | 1 | 402 | 1 | 378 | 4.71e-158 | 450 |
MS.gene020418.t1 | MTR_3g101050 | 62.183 | 394 | 124 | 9 | 14 | 402 | 23 | 396 | 4.30e-149 | 428 |
MS.gene020418.t1 | MTR_3g102920 | 55.941 | 404 | 131 | 7 | 10 | 403 | 43 | 409 | 5.15e-139 | 403 |
MS.gene020418.t1 | MTR_3g100520 | 84.234 | 222 | 22 | 1 | 183 | 404 | 1 | 209 | 5.67e-132 | 377 |
MS.gene020418.t1 | MTR_3g101190 | 54.521 | 365 | 101 | 5 | 40 | 404 | 13 | 312 | 2.41e-124 | 362 |
MS.gene020418.t1 | MTR_3g101200 | 52.273 | 396 | 160 | 5 | 10 | 403 | 23 | 391 | 5.20e-124 | 364 |
MS.gene020418.t1 | MTR_3g100995 | 65.759 | 257 | 81 | 4 | 149 | 404 | 14 | 264 | 6.32e-118 | 344 |
MS.gene020418.t1 | MTR_3g100010 | 52.260 | 354 | 111 | 6 | 7 | 320 | 1 | 336 | 6.13e-110 | 327 |
MS.gene020418.t1 | MTR_7g050830 | 51.840 | 326 | 121 | 5 | 9 | 310 | 5 | 318 | 6.60e-106 | 315 |
MS.gene020418.t1 | MTR_3g018747 | 62.977 | 262 | 79 | 4 | 142 | 402 | 9 | 253 | 2.16e-104 | 309 |
MS.gene020418.t1 | MTR_3g015760 | 55.903 | 288 | 107 | 5 | 123 | 402 | 4 | 279 | 8.20e-100 | 298 |
MS.gene020418.t1 | MTR_3g111160 | 65.471 | 223 | 73 | 3 | 183 | 404 | 1 | 220 | 2.03e-87 | 265 |
MS.gene020418.t1 | MTR_3g101110 | 57.322 | 239 | 68 | 4 | 145 | 378 | 71 | 280 | 1.85e-84 | 259 |
MS.gene020418.t1 | MTR_3g114310 | 41.266 | 395 | 211 | 11 | 23 | 404 | 24 | 410 | 2.90e-84 | 263 |
MS.gene020418.t1 | MTR_2g046410 | 63.285 | 207 | 70 | 3 | 199 | 402 | 144 | 347 | 1.38e-79 | 249 |
MS.gene020418.t1 | MTR_3g099970 | 60.101 | 198 | 60 | 3 | 142 | 339 | 20 | 198 | 3.38e-78 | 240 |
MS.gene020418.t1 | MTR_3g111150 | 57.222 | 180 | 49 | 2 | 21 | 198 | 2 | 155 | 8.03e-65 | 205 |
MS.gene020418.t1 | MTR_3g101020 | 56.842 | 190 | 51 | 4 | 216 | 404 | 1 | 160 | 1.75e-63 | 201 |
MS.gene020418.t1 | MTR_3g100990 | 82.677 | 127 | 22 | 0 | 16 | 142 | 3 | 129 | 4.79e-62 | 208 |
MS.gene020418.t1 | MTR_3g102870 | 65.333 | 150 | 50 | 2 | 205 | 354 | 1 | 148 | 8.46e-61 | 194 |
MS.gene020418.t1 | MTR_3g101150 | 60.625 | 160 | 57 | 3 | 248 | 403 | 1 | 158 | 9.63e-57 | 184 |
MS.gene020418.t1 | MTR_4g093550 | 63.095 | 84 | 31 | 0 | 18 | 101 | 6 | 89 | 2.50e-27 | 104 |
MS.gene020418.t1 | MTR_6g046890 | 57.500 | 80 | 24 | 2 | 35 | 104 | 16 | 95 | 8.38e-20 | 85.5 |
MS.gene020418.t1 | MTR_3g101140 | 63.768 | 69 | 24 | 1 | 337 | 404 | 48 | 116 | 4.72e-17 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020418.t1 | AT1G47710 | 51.680 | 387 | 184 | 3 | 18 | 402 | 5 | 390 | 5.14e-141 | 407 |
MS.gene020418.t1 | AT1G47710 | 51.680 | 387 | 184 | 3 | 18 | 402 | 32 | 417 | 1.90e-140 | 407 |
MS.gene020418.t1 | AT3G45220 | 47.328 | 393 | 191 | 6 | 18 | 401 | 5 | 390 | 1.78e-124 | 365 |
MS.gene020418.t1 | AT2G25240 | 47.165 | 388 | 191 | 7 | 18 | 401 | 5 | 382 | 6.80e-119 | 351 |
MS.gene020418.t1 | AT2G26390 | 45.844 | 397 | 187 | 9 | 18 | 401 | 5 | 386 | 4.94e-115 | 341 |
MS.gene020418.t1 | AT1G62170 | 41.221 | 393 | 195 | 7 | 18 | 401 | 66 | 431 | 1.66e-102 | 311 |
MS.gene020418.t1 | AT1G64030 | 41.795 | 390 | 198 | 6 | 18 | 401 | 5 | 371 | 3.62e-99 | 300 |
MS.gene020418.t1 | AT2G14540 | 42.821 | 397 | 198 | 7 | 10 | 401 | 25 | 397 | 1.80e-97 | 297 |
MS.gene020418.t1 | AT2G35580 | 40.196 | 408 | 200 | 10 | 1 | 401 | 1 | 371 | 7.32e-97 | 294 |
MS.gene020418.t1 | AT1G62170 | 38.028 | 426 | 195 | 8 | 18 | 401 | 66 | 464 | 3.20e-95 | 293 |
MS.gene020418.t1 | AT1G64010 | 46.364 | 220 | 92 | 5 | 183 | 401 | 1 | 195 | 1.43e-58 | 190 |
MS.gene020418.t1 | AT1G64010 | 44.660 | 206 | 88 | 5 | 197 | 401 | 1 | 181 | 2.96e-50 | 168 |
MS.gene020418.t1 | AT1G62160 | 37.333 | 225 | 107 | 6 | 184 | 401 | 21 | 218 | 3.36e-32 | 121 |
MS.gene020418.t1 | AT1G63280 | 48.696 | 115 | 55 | 2 | 142 | 254 | 8 | 120 | 8.96e-31 | 114 |
MS.gene020418.t1 | AT1G51330 | 47.748 | 111 | 55 | 2 | 141 | 248 | 30 | 140 | 1.60e-25 | 102 |
MS.gene020418.t1 | AT1G64020 | 34.783 | 115 | 66 | 4 | 23 | 132 | 10 | 120 | 6.83e-14 | 68.6 |
Find 97 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAATGCAATGTACTTTAA+AGG | 0.146186 | 3.3:-82938986 | MS.gene020418:CDS |
GAAAGATTTGTGAAATATAT+TGG | 0.220832 | 3.3:+82938520 | None:intergenic |
TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 3.3:-82939087 | MS.gene020418:CDS |
TCATCTTCGCCTTGATTATA+AGG | 0.237108 | 3.3:+82938818 | None:intergenic |
TCCAATAAACCGTTTCTTAT+AGG | 0.238320 | 3.3:+82938871 | None:intergenic |
GAGTAATAATTTCTTTAATA+AGG | 0.258043 | 3.3:+82939044 | None:intergenic |
GTTAGGTTGTTGACTGAATT+TGG | 0.264199 | 3.3:+82939022 | None:intergenic |
TCCTATAAGAAACGGTTTAT+TGG | 0.267830 | 3.3:-82938872 | MS.gene020418:CDS |
TGACGGAGCTACCATTTAAA+AGG | 0.273055 | 3.3:+82938912 | None:intergenic |
CCAAGATTCAATATTTCGTT+TGG | 0.303904 | 3.3:-82938653 | MS.gene020418:CDS |
TGCATTTGCAAATATGAGTT+TGG | 0.309749 | 3.3:+82939000 | None:intergenic |
GTTGAGATGGTCAGTGGATT+TGG | 0.313863 | 3.3:+82940447 | None:intergenic |
CTATCTGATGCTGCTTCTTC+CGG | 0.324419 | 3.3:-82940394 | MS.gene020418:CDS |
AAACTTCTCTAATTAGAAAT+AGG | 0.325707 | 3.3:+82938384 | None:intergenic |
GAAATATATTGGAAACATAT+AGG | 0.348298 | 3.3:+82938531 | None:intergenic |
TATGAAAACATACCTTGTTC+TGG | 0.356984 | 3.3:+82940254 | None:intergenic |
TCCCACGCAACAACAGCTTC+TGG | 0.368338 | 3.3:-82940482 | MS.gene020418:CDS |
GTCAACTTTGGTTGAGAAGC+TGG | 0.373900 | 3.3:-82938747 | MS.gene020418:CDS |
GAAGGAAGGTTGAAGAGAAA+TGG | 0.376988 | 3.3:+82940327 | None:intergenic |
CTCTTTCATCCAAGGTGTGT+GGG | 0.385352 | 3.3:-82940359 | MS.gene020418:CDS |
GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 3.3:-82939086 | MS.gene020418:CDS |
ATTAGCCACAATTTCTTTGA+AGG | 0.395580 | 3.3:+82940309 | None:intergenic |
CAAGATTCAATATTTCGTTT+GGG | 0.400361 | 3.3:-82938652 | MS.gene020418:CDS |
GGAAACTTTGGTTTGGTTGG+TGG | 0.403182 | 3.3:+82940612 | None:intergenic |
GACAGTCCATCCTTTGCATC+TGG | 0.405033 | 3.3:+82938767 | None:intergenic |
CAGGTGCTCAATCCTCTTGT+TGG | 0.408553 | 3.3:-82938335 | MS.gene020418:CDS |
CTTTGTCTTCCTTATAATCA+AGG | 0.415705 | 3.3:-82938827 | MS.gene020418:CDS |
CCTCATGGCTGCTGCCTCTG+AGG | 0.417264 | 3.3:-82940506 | MS.gene020418:CDS |
CCATGAGGCTGAGCGTAACT+TGG | 0.418916 | 3.3:+82940521 | None:intergenic |
TCCGTTTGTTGATTGATTCA+CGG | 0.423037 | 3.3:+82940662 | None:intergenic |
ACCGGAACAATCCTCTTTGT+TGG | 0.428785 | 3.3:-82938359 | MS.gene020418:CDS |
GAAAGAGAGGCGAGGCCCGC+CGG | 0.429775 | 3.3:+82940375 | None:intergenic |
GACCATGGTAAGGGAAACTT+TGG | 0.431672 | 3.3:+82940600 | None:intergenic |
AACAATCCTCTTTGTTGGGC+AGG | 0.435386 | 3.3:-82938354 | MS.gene020418:CDS |
CTCATGGCTGCTGCCTCTGA+GGG | 0.435904 | 3.3:-82940505 | MS.gene020418:CDS |
TTGCAAATATGAGTTTGGTT+AGG | 0.436046 | 3.3:+82939005 | None:intergenic |
AAGGGAAACTTTGGTTTGGT+TGG | 0.440125 | 3.3:+82940609 | None:intergenic |
CCGGAACAATCCTCTTTGTT+GGG | 0.441601 | 3.3:-82938358 | MS.gene020418:CDS |
CCAAACGAAATATTGAATCT+TGG | 0.448102 | 3.3:+82938653 | None:intergenic |
TAATGATTATAAAGCCACTT+TGG | 0.450703 | 3.3:-82940290 | MS.gene020418:CDS |
CACTTCTTTAATCACTTCAC+TGG | 0.457017 | 3.3:+82939096 | None:intergenic |
TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.3:-82938500 | MS.gene020418:CDS |
CCGTTTGTTGATTGATTCAC+GGG | 0.460807 | 3.3:+82940663 | None:intergenic |
ACTGATACGATGAAGGAGTT+AGG | 0.462036 | 3.3:-82938620 | MS.gene020418:CDS |
CCCAACAAAGAGGATTGTTC+CGG | 0.470616 | 3.3:+82938358 | None:intergenic |
CGGAAGAAGCAGCATCAGAT+AGG | 0.486728 | 3.3:+82940395 | None:intergenic |
AGAGATGTTTGACCATGGTA+AGG | 0.494445 | 3.3:+82940590 | None:intergenic |
TTTCTTATAGGAGGTCATGA+AGG | 0.498012 | 3.3:+82938883 | None:intergenic |
TGGTAAGGGAAACTTTGGTT+TGG | 0.501909 | 3.3:+82940605 | None:intergenic |
ACCTTCCTTCAAAGAAATTG+TGG | 0.502391 | 3.3:-82940314 | MS.gene020418:CDS |
CCTCGCCTCTCTTTCATCCA+AGG | 0.508325 | 3.3:-82940367 | MS.gene020418:CDS |
GTAAAACCTCCAGAAGAGAA+AGG | 0.510977 | 3.3:+82938587 | None:intergenic |
GCCACAATTTCTTTGAAGGA+AGG | 0.512461 | 3.3:+82940313 | None:intergenic |
AATAAACCGTTTCTTATAGG+AGG | 0.518982 | 3.3:+82938874 | None:intergenic |
CCCGTGAATCAATCAACAAA+CGG | 0.520413 | 3.3:-82940663 | MS.gene020418:CDS |
CAATGTACTTTAAAGGAACA+TGG | 0.522199 | 3.3:-82938979 | MS.gene020418:CDS |
TCATGACCTCCTATAAGAAA+CGG | 0.525564 | 3.3:-82938880 | MS.gene020418:CDS |
TCTCTTTCATCCAAGGTGTG+TGG | 0.526400 | 3.3:-82940360 | MS.gene020418:CDS |
TTTCTTCCAGATGCAAAGGA+TGG | 0.531417 | 3.3:-82938773 | MS.gene020418:CDS |
GACTGAGAAGTTTGATACTT+CGG | 0.537810 | 3.3:-82938957 | MS.gene020418:CDS |
TCTGATGCTGCTTCTTCCGG+CGG | 0.542664 | 3.3:-82940391 | MS.gene020418:CDS |
TTCAGTTGATTTCCAGAACA+AGG | 0.543538 | 3.3:-82940266 | MS.gene020418:intron |
TTTGATCAACCCACACACCT+TGG | 0.549446 | 3.3:+82940350 | None:intergenic |
GAATTTATGGGCTGAAGAAG+AGG | 0.549526 | 3.3:-82939074 | MS.gene020418:CDS |
TTCTTATAGGAGGTCATGAA+GGG | 0.550790 | 3.3:+82938884 | None:intergenic |
CTGATGCTGCTTCTTCCGGC+GGG | 0.551412 | 3.3:-82940390 | MS.gene020418:CDS |
TCCAGAAGCTGTTGTTGCGT+GGG | 0.552353 | 3.3:+82940481 | None:intergenic |
GTCCAGAAGCTGTTGTTGCG+TGG | 0.552957 | 3.3:+82940480 | None:intergenic |
AAAGGATGGACTGTCAACTT+TGG | 0.555822 | 3.3:-82938759 | MS.gene020418:CDS |
CCAAGTTACGCTCAGCCTCA+TGG | 0.556554 | 3.3:-82940521 | MS.gene020418:CDS |
GGAAACAAGATGAGAGGCGA+TGG | 0.556903 | 3.3:+82940423 | None:intergenic |
GGTCATGAAGGGAACTTTGA+CGG | 0.559017 | 3.3:+82938895 | None:intergenic |
TGGGCTGAAGAAGAGGCAAA+TGG | 0.561310 | 3.3:-82939067 | MS.gene020418:CDS |
AGCAGCATCAGATAGGATGA+TGG | 0.563820 | 3.3:+82940402 | None:intergenic |
CTAATTAGAGAAGTTTCGAC+CGG | 0.568701 | 3.3:-82938377 | MS.gene020418:CDS |
GAAGTTTGATACTTCGGTAA+CGG | 0.571905 | 3.3:-82938951 | MS.gene020418:CDS |
GAGAGGCGATGGAGTTGAGA+TGG | 0.573677 | 3.3:+82940434 | None:intergenic |
GAAATCAACTGAAGCCAAAG+TGG | 0.575945 | 3.3:+82940276 | None:intergenic |
GGTTGATTCATCGTGAAGGA+CGG | 0.577040 | 3.3:+82940633 | None:intergenic |
AGTTAAGATCATCCAACAAG+AGG | 0.577438 | 3.3:+82938323 | None:intergenic |
TGAAACTACTGATACGATGA+AGG | 0.578251 | 3.3:-82938627 | MS.gene020418:CDS |
GAGATGTTTGACCATGGTAA+GGG | 0.580757 | 3.3:+82940591 | None:intergenic |
TCTCTAATTAGAAATAGGAA+AGG | 0.584531 | 3.3:+82938389 | None:intergenic |
GATGGTCAGTGGATTTGGAT+CGG | 0.592329 | 3.3:+82940452 | None:intergenic |
TTGTTGCGTGGGACCCTCAG+AGG | 0.607840 | 3.3:+82940492 | None:intergenic |
TGAGCACCTGCCCAACAAAG+AGG | 0.624187 | 3.3:+82938348 | None:intergenic |
AACCAAAGTTTCCCTTACCA+TGG | 0.630609 | 3.3:-82940602 | MS.gene020418:CDS |
CCTCAGAGGCAGCAGCCATG+AGG | 0.640062 | 3.3:+82940506 | None:intergenic |
TGGTGGTTGATTCATCGTGA+AGG | 0.640526 | 3.3:+82940629 | None:intergenic |
GATGATGGAAACAAGATGAG+AGG | 0.645061 | 3.3:+82940417 | None:intergenic |
TGAGAAGAGATGTTTGACCA+TGG | 0.646563 | 3.3:+82940585 | None:intergenic |
ACACACCTTGGATGAAAGAG+AGG | 0.656878 | 3.3:+82940362 | None:intergenic |
AGCGTAACTTGGAGTGACAG+CGG | 0.664638 | 3.3:+82940532 | None:intergenic |
GCTACAAAGTCTTCTCGATG+TGG | 0.664760 | 3.3:+82938419 | None:intergenic |
GGTCAGTGGATTTGGATCGG+AGG | 0.671238 | 3.3:+82940455 | None:intergenic |
GATGGAGTTGAGATGGTCAG+TGG | 0.682782 | 3.3:+82940441 | None:intergenic |
CCTTGGATGAAAGAGAGGCG+AGG | 0.711185 | 3.3:+82940367 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAATCAAAATAAAGAAAT+TGG | - | chr3.3:82939223-82939242 | MS.gene020418:intron | 10.0% |
!!! | TTAATTTGATATGATTTTAA+AGG | - | chr3.3:82939882-82939901 | MS.gene020418:intron | 10.0% |
!! | AAAAAACTAATTATTTGTGA+AGG | + | chr3.3:82938915-82938934 | None:intergenic | 15.0% |
!! | GAGTAATAATTTCTTTAATA+AGG | + | chr3.3:82939960-82939979 | None:intergenic | 15.0% |
!!! | AAAAAACTAATAGTTTGTTA+AGG | + | chr3.3:82938844-82938863 | None:intergenic | 15.0% |
!!! | TTCAAATTTTATAGTACAAA+AGG | - | chr3.3:82939629-82939648 | MS.gene020418:intron | 15.0% |
!!! | TTTTATTTCATAACCTAATT+TGG | - | chr3.3:82938947-82938966 | MS.gene020418:CDS | 15.0% |
!! | AAACTTCTCTAATTAGAAAT+AGG | + | chr3.3:82940620-82940639 | None:intergenic | 20.0% |
!! | AATTAACATGAAATAACATG+AGG | + | chr3.3:82938803-82938822 | None:intergenic | 20.0% |
!! | ATCAGAATATAAAACAATCA+AGG | + | chr3.3:82939519-82939538 | None:intergenic | 20.0% |
!! | ATTAACATGAAATAACATGA+GGG | + | chr3.3:82938802-82938821 | None:intergenic | 20.0% |
!! | GAAAGATTTGTGAAATATAT+TGG | + | chr3.3:82940484-82940503 | None:intergenic | 20.0% |
!! | GAAATATATTGGAAACATAT+AGG | + | chr3.3:82940473-82940492 | None:intergenic | 20.0% |
!! | GATTAAAGAAGTGAATTTAT+GGG | - | chr3.3:82939915-82939934 | MS.gene020418:intron | 20.0% |
!! | GTGAAAATTATGTTAACAAA+AGG | - | chr3.3:82939796-82939815 | MS.gene020418:intron | 20.0% |
!! | TAATACAATGCTAAATTAGT+TGG | + | chr3.3:82939775-82939794 | None:intergenic | 20.0% |
!! | TCAGAATATAAAACAATCAA+GGG | + | chr3.3:82939518-82939537 | None:intergenic | 20.0% |
!! | TGATTAAAGAAGTGAATTTA+TGG | - | chr3.3:82939914-82939933 | MS.gene020418:intron | 20.0% |
!! | TTGTACTATAAAATTTGAAG+AGG | + | chr3.3:82939628-82939647 | None:intergenic | 20.0% |
!!! | AGTGATTTTTACCTTTTAAA+TGG | - | chr3.3:82940078-82940097 | MS.gene020418:intron | 20.0% |
!!! | CTCTAAAATTATTTTAGATG+AGG | + | chr3.3:82939684-82939703 | None:intergenic | 20.0% |
! | AAATAAAGAAATTGGACAGA+TGG | - | chr3.3:82939231-82939250 | MS.gene020418:intron | 25.0% |
! | AATAAAGAAATTGGACAGAT+GGG | - | chr3.3:82939232-82939251 | MS.gene020418:intron | 25.0% |
! | AATAACGTTAGATCCAAATT+AGG | + | chr3.3:82938963-82938982 | None:intergenic | 25.0% |
! | AGCACAAATAATATTTGTGT+TGG | - | chr3.3:82938993-82939012 | MS.gene020418:CDS | 25.0% |
! | ATACACACTATTCAAAATGA+TGG | + | chr3.3:82939284-82939303 | None:intergenic | 25.0% |
! | CAAGATTCAATATTTCGTTT+GGG | - | chr3.3:82940349-82940368 | MS.gene020418:CDS | 25.0% |
! | CTTATTAAAAAAGTGGAAGT+AGG | - | chr3.3:82940312-82940331 | MS.gene020418:CDS | 25.0% |
! | GCTTAAACATATTTGCATAT+TGG | - | chr3.3:82939136-82939155 | MS.gene020418:intron | 25.0% |
! | TAATGATTATAAAGCCACTT+TGG | - | chr3.3:82938711-82938730 | MS.gene020418:CDS | 25.0% |
! | TACACACTATTCAAAATGAT+GGG | + | chr3.3:82939283-82939302 | None:intergenic | 25.0% |
! | TCTCTAATTAGAAATAGGAA+AGG | + | chr3.3:82940615-82940634 | None:intergenic | 25.0% |
! | TCTTCCTCTTATTAAAAAAG+TGG | - | chr3.3:82940305-82940324 | MS.gene020418:CDS | 25.0% |
! | TTAATATATGGAGTGGAAAT+AGG | + | chr3.3:82938777-82938796 | None:intergenic | 25.0% |
! | TTCATTGAAGTAAATGAAGA+AGG | - | chr3.3:82940501-82940520 | MS.gene020418:CDS | 25.0% |
!! | CATTTTGAATAGTGTGTATT+TGG | - | chr3.3:82939285-82939304 | MS.gene020418:intron | 25.0% |
!! | GTATGAATTTGCTTTATATG+CGG | - | chr3.3:82939310-82939329 | MS.gene020418:intron | 25.0% |
!! | TGCTTTGATCAATTTAGAAT+TGG | + | chr3.3:82939569-82939588 | None:intergenic | 25.0% |
!!! | ACTTCCACTTTTTTAATAAG+AGG | + | chr3.3:82940312-82940331 | None:intergenic | 25.0% |
!!! | GGGATGATATTTATTTTGAA+GGG | + | chr3.3:82939409-82939428 | None:intergenic | 25.0% |
!!! | TATAGATGTCATTTTTTCAG+TGG | + | chr3.3:82939462-82939481 | None:intergenic | 25.0% |
!!! | TGGGATGATATTTATTTTGA+AGG | + | chr3.3:82939410-82939429 | None:intergenic | 25.0% |
AATAAACCGTTTCTTATAGG+AGG | + | chr3.3:82940130-82940149 | None:intergenic | 30.0% | |
ACAAAGGTTTGTCACATATA+TGG | + | chr3.3:82939595-82939614 | None:intergenic | 30.0% | |
ATCTAGAAAACAGAAAGGAT+AGG | + | chr3.3:82939752-82939771 | None:intergenic | 30.0% | |
ATTAGCCACAATTTCTTTGA+AGG | + | chr3.3:82938695-82938714 | None:intergenic | 30.0% | |
CCAAACGAAATATTGAATCT+TGG | + | chr3.3:82940351-82940370 | None:intergenic | 30.0% | |
CCAAGATTCAATATTTCGTT+TGG | - | chr3.3:82940348-82940367 | MS.gene020418:CDS | 30.0% | |
CTTTGTCTTCCTTATAATCA+AGG | - | chr3.3:82940174-82940193 | MS.gene020418:intron | 30.0% | |
GCAAATGCAATGTACTTTAA+AGG | - | chr3.3:82940015-82940034 | MS.gene020418:intron | 30.0% | |
TATGAAAACATACCTTGTTC+TGG | + | chr3.3:82938750-82938769 | None:intergenic | 30.0% | |
TCCAATAAACCGTTTCTTAT+AGG | + | chr3.3:82940133-82940152 | None:intergenic | 30.0% | |
TCCTATAAGAAACGGTTTAT+TGG | - | chr3.3:82940129-82940148 | MS.gene020418:intron | 30.0% | |
TGCATTTGCAAATATGAGTT+TGG | + | chr3.3:82940004-82940023 | None:intergenic | 30.0% | |
TGGGAAAACATTATACATAC+AGG | + | chr3.3:82939264-82939283 | None:intergenic | 30.0% | |
TTGCAAATATGAGTTTGGTT+AGG | + | chr3.3:82939999-82940018 | None:intergenic | 30.0% | |
TTTGAATAGTGTGTATTTGG+AGG | - | chr3.3:82939288-82939307 | MS.gene020418:intron | 30.0% | |
! | ACATGAGACCTTAATGTTTT+AGG | - | chr3.3:82939046-82939065 | MS.gene020418:CDS | 30.0% |
! | CAATGTACTTTAAAGGAACA+TGG | - | chr3.3:82940022-82940041 | MS.gene020418:intron | 30.0% |
! | TATTTTTCTTCCAGATGCAA+AGG | - | chr3.3:82940224-82940243 | MS.gene020418:intron | 30.0% |
!! | AACATGAGGGCATTAATATA+TGG | + | chr3.3:82938789-82938808 | None:intergenic | 30.0% |
!! | TCTTTGTTGGAGTTTGTTTT+CGG | + | chr3.3:82939341-82939360 | None:intergenic | 30.0% |
!! | TTCTGGAGGTTTTACAAAAA+TGG | - | chr3.3:82940422-82940441 | MS.gene020418:CDS | 30.0% |
ACCTTCCTTCAAAGAAATTG+TGG | - | chr3.3:82938687-82938706 | MS.gene020418:CDS | 35.0% | |
ATGCAAATATGTTTAAGCGC+TGG | + | chr3.3:82939134-82939153 | None:intergenic | 35.0% | |
CACTTCTTTAATCACTTCAC+TGG | + | chr3.3:82939908-82939927 | None:intergenic | 35.0% | |
CCAACCAACCTAAAACATTA+AGG | + | chr3.3:82939057-82939076 | None:intergenic | 35.0% | |
CTAATTAGAGAAGTTTCGAC+CGG | - | chr3.3:82940624-82940643 | MS.gene020418:CDS | 35.0% | |
GAAGTTTGATACTTCGGTAA+CGG | - | chr3.3:82940050-82940069 | MS.gene020418:intron | 35.0% | |
GACTGAGAAGTTTGATACTT+CGG | - | chr3.3:82940044-82940063 | MS.gene020418:intron | 35.0% | |
GTTGGATCTAGAAAACAGAA+AGG | + | chr3.3:82939757-82939776 | None:intergenic | 35.0% | |
TCATCTTCGCCTTGATTATA+AGG | + | chr3.3:82940186-82940205 | None:intergenic | 35.0% | |
TCATGACCTCCTATAAGAAA+CGG | - | chr3.3:82940121-82940140 | MS.gene020418:intron | 35.0% | |
TGAAACTACTGATACGATGA+AGG | - | chr3.3:82940374-82940393 | MS.gene020418:CDS | 35.0% | |
TTCTTATAGGAGGTCATGAA+GGG | + | chr3.3:82940120-82940139 | None:intergenic | 35.0% | |
TTTCTTATAGGAGGTCATGA+AGG | + | chr3.3:82940121-82940140 | None:intergenic | 35.0% | |
! | ATTTTACCTTTCTCTTCTGG+AGG | - | chr3.3:82940408-82940427 | MS.gene020418:CDS | 35.0% |
! | CGGTTTATTGGAGATTTTGA+TGG | - | chr3.3:82940141-82940160 | MS.gene020418:intron | 35.0% |
! | GGAGGTTTTACAAAAATGGT+GGG | - | chr3.3:82940426-82940445 | MS.gene020418:CDS | 35.0% |
! | GTGATTTTACCTTTCTCTTC+TGG | - | chr3.3:82940405-82940424 | MS.gene020418:CDS | 35.0% |
! | GTTAGGTTGTTGACTGAATT+TGG | + | chr3.3:82939982-82940001 | None:intergenic | 35.0% |
! | TCCGTTTGTTGATTGATTCA+CGG | + | chr3.3:82938342-82938361 | None:intergenic | 35.0% |
! | TGGAGGTTTTACAAAAATGG+TGG | - | chr3.3:82940425-82940444 | MS.gene020418:CDS | 35.0% |
! | TTCAGTTGATTTCCAGAACA+AGG | - | chr3.3:82938735-82938754 | MS.gene020418:CDS | 35.0% |
!! | AAGAGGCGTTTCAATAACAA+AGG | + | chr3.3:82939611-82939630 | None:intergenic | 35.0% |
!! | CTTTGTTGGAGTTTGTTTTC+GGG | + | chr3.3:82939340-82939359 | None:intergenic | 35.0% |
!! | GAGACCTTAATGTTTTAGGT+TGG | - | chr3.3:82939050-82939069 | MS.gene020418:CDS | 35.0% |
!!! | AACAATCAAGGGTGTTCTTT+TGG | + | chr3.3:82939507-82939526 | None:intergenic | 35.0% |
!!! | ACAATCAAGGGTGTTCTTTT+GGG | + | chr3.3:82939506-82939525 | None:intergenic | 35.0% |
!!! | ATAGGAGTTGGTGGTTTTAT+GGG | + | chr3.3:82939429-82939448 | None:intergenic | 35.0% |
!!! | ATGTCATTTTTTCAGTGGTC+AGG | + | chr3.3:82939457-82939476 | None:intergenic | 35.0% |
!!! | CCTTAATGTTTTAGGTTGGT+TGG | - | chr3.3:82939054-82939073 | MS.gene020418:CDS | 35.0% |
!!! | TATAGGAGTTGGTGGTTTTA+TGG | + | chr3.3:82939430-82939449 | None:intergenic | 35.0% |
AAAGAAATTGGACAGATGGG+TGG | - | chr3.3:82939235-82939254 | MS.gene020418:intron | 40.0% | |
AACCAAAGTTTCCCTTACCA+TGG | - | chr3.3:82938399-82938418 | MS.gene020418:CDS | 40.0% | |
ACTGATACGATGAAGGAGTT+AGG | - | chr3.3:82940381-82940400 | MS.gene020418:CDS | 40.0% | |
AGAGATGTTTGACCATGGTA+AGG | + | chr3.3:82938414-82938433 | None:intergenic | 40.0% | |
ATAGCACACGTTCATGACTT+TGG | - | chr3.3:82939537-82939556 | MS.gene020418:intron | 40.0% | |
CCCGTGAATCAATCAACAAA+CGG | - | chr3.3:82938338-82938357 | MS.gene020418:CDS | 40.0% | |
GAAATCAACTGAAGCCAAAG+TGG | + | chr3.3:82938728-82938747 | None:intergenic | 40.0% | |
GAAGGAAGGTTGAAGAGAAA+TGG | + | chr3.3:82938677-82938696 | None:intergenic | 40.0% | |
GAGATGTTTGACCATGGTAA+GGG | + | chr3.3:82938413-82938432 | None:intergenic | 40.0% | |
GTAAAACCTCCAGAAGAGAA+AGG | + | chr3.3:82940417-82940436 | None:intergenic | 40.0% | |
TGACGGAGCTACCATTTAAA+AGG | + | chr3.3:82940092-82940111 | None:intergenic | 40.0% | |
TGAGAAGAGATGTTTGACCA+TGG | + | chr3.3:82938419-82938438 | None:intergenic | 40.0% | |
TGGTAAGGGAAACTTTGGTT+TGG | + | chr3.3:82938399-82938418 | None:intergenic | 40.0% | |
TTCAGTGGTCAGGTAAGTAT+AGG | + | chr3.3:82939447-82939466 | None:intergenic | 40.0% | |
TTTCTTCCAGATGCAAAGGA+TGG | - | chr3.3:82940228-82940247 | MS.gene020418:intron | 40.0% | |
! | CCGTTTGTTGATTGATTCAC+GGG | + | chr3.3:82938341-82938360 | None:intergenic | 40.0% |
! | GAATTTATGGGCTGAAGAAG+AGG | - | chr3.3:82939927-82939946 | MS.gene020418:intron | 40.0% |
! | GCCACAATTTCTTTGAAGGA+AGG | + | chr3.3:82938691-82938710 | None:intergenic | 40.0% |
! | GGTAGAACTTGCTCTAAATC+AGG | + | chr3.3:82938894-82938913 | None:intergenic | 40.0% |
!! | AAAGGATGGACTGTCAACTT+TGG | - | chr3.3:82940242-82940261 | MS.gene020418:intron | 40.0% |
!! | AAGGGAAACTTTGGTTTGGT+TGG | + | chr3.3:82938395-82938414 | None:intergenic | 40.0% |
!! | GAGGGCATTAATATATGGAG+TGG | + | chr3.3:82938784-82938803 | None:intergenic | 40.0% |
!! | GATGATGGAAACAAGATGAG+AGG | + | chr3.3:82938587-82938606 | None:intergenic | 40.0% |
!! | TGAAGGGTGTTGTCCTTTAT+GGG | + | chr3.3:82939393-82939412 | None:intergenic | 40.0% |
!! | TTGAAGGGTGTTGTCCTTTA+TGG | + | chr3.3:82939394-82939413 | None:intergenic | 40.0% |
!!! | AATGGTGGGTTCTTCTTTTG+TGG | - | chr3.3:82940440-82940459 | MS.gene020418:CDS | 40.0% |
!!! | ATGGTGGGTTCTTCTTTTGT+GGG | - | chr3.3:82940441-82940460 | MS.gene020418:CDS | 40.0% |
!!! | CAATCAAGGGTGTTCTTTTG+GGG | + | chr3.3:82939505-82939524 | None:intergenic | 40.0% |
AACAATCCTCTTTGTTGGGC+AGG | - | chr3.3:82940647-82940666 | MS.gene020418:CDS | 45.0% | |
ACACACCTTGGATGAAAGAG+AGG | + | chr3.3:82938642-82938661 | None:intergenic | 45.0% | |
ACCGGAACAATCCTCTTTGT+TGG | - | chr3.3:82940642-82940661 | MS.gene020418:CDS | 45.0% | |
AGCAGCATCAGATAGGATGA+TGG | + | chr3.3:82938602-82938621 | None:intergenic | 45.0% | |
CAGGTAAGTATAGGAGTTGG+TGG | + | chr3.3:82939438-82939457 | None:intergenic | 45.0% | |
CCCAACAAAGAGGATTGTTC+CGG | + | chr3.3:82940646-82940665 | None:intergenic | 45.0% | |
CCGGAACAATCCTCTTTGTT+GGG | - | chr3.3:82940643-82940662 | MS.gene020418:CDS | 45.0% | |
CCTACGATCAACACCCATAA+AGG | - | chr3.3:82939377-82939396 | MS.gene020418:intron | 45.0% | |
CTCTTTCATCCAAGGTGTGT+GGG | - | chr3.3:82938642-82938661 | MS.gene020418:CDS | 45.0% | |
GACCATGGTAAGGGAAACTT+TGG | + | chr3.3:82938404-82938423 | None:intergenic | 45.0% | |
GATCGTAGGTGTGTCTTTGT+TGG | + | chr3.3:82939354-82939373 | None:intergenic | 45.0% | |
GCGTGTGTGTGTATATAGCA+TGG | - | chr3.3:82939086-82939105 | MS.gene020418:CDS | 45.0% | |
GCTACAAAGTCTTCTCGATG+TGG | + | chr3.3:82940585-82940604 | None:intergenic | 45.0% | |
GGTCAGGTAAGTATAGGAGT+TGG | + | chr3.3:82939441-82939460 | None:intergenic | 45.0% | |
GGTCATGAAGGGAACTTTGA+CGG | + | chr3.3:82940109-82940128 | None:intergenic | 45.0% | |
GTCAACTTTGGTTGAGAAGC+TGG | - | chr3.3:82940254-82940273 | MS.gene020418:intron | 45.0% | |
TCTCTTTCATCCAAGGTGTG+TGG | - | chr3.3:82938641-82938660 | MS.gene020418:CDS | 45.0% | |
TTGATCGTAGGTGTGATCGT+AGG | + | chr3.3:82939368-82939387 | None:intergenic | 45.0% | |
TTTGATCAACCCACACACCT+TGG | + | chr3.3:82938654-82938673 | None:intergenic | 45.0% | |
! | CTATCTGATGCTGCTTCTTC+CGG | - | chr3.3:82938607-82938626 | MS.gene020418:CDS | 45.0% |
! | GATGGTCAGTGGATTTGGAT+CGG | + | chr3.3:82938552-82938571 | None:intergenic | 45.0% |
! | GGTTGATTCATCGTGAAGGA+CGG | + | chr3.3:82938371-82938390 | None:intergenic | 45.0% |
! | GTTGAGATGGTCAGTGGATT+TGG | + | chr3.3:82938557-82938576 | None:intergenic | 45.0% |
! | TGGTGGTTGATTCATCGTGA+AGG | + | chr3.3:82938375-82938394 | None:intergenic | 45.0% |
!! | CCTTTATGGGTGTTGATCGT+AGG | + | chr3.3:82939380-82939399 | None:intergenic | 45.0% |
!! | GGAAACTTTGGTTTGGTTGG+TGG | + | chr3.3:82938392-82938411 | None:intergenic | 45.0% |
!!! | TGTTCTTTTGGGGTGAGTAG+TGG | + | chr3.3:82939495-82939514 | None:intergenic | 45.0% |
!! | AAATTATACTTATAAAAATT+TGG | + | chr3.3:82939205-82939224 | None:intergenic | 5.0% |
AGCGTAACTTGGAGTGACAG+CGG | + | chr3.3:82938472-82938491 | None:intergenic | 50.0% | |
CAGGTGCTCAATCCTCTTGT+TGG | - | chr3.3:82940666-82940685 | MS.gene020418:CDS | 50.0% | |
CGGAAGAAGCAGCATCAGAT+AGG | + | chr3.3:82938609-82938628 | None:intergenic | 50.0% | |
GACAGTCCATCCTTTGCATC+TGG | + | chr3.3:82940237-82940256 | None:intergenic | 50.0% | |
GAGGCGTATGCTAAAGTAGC+AGG | + | chr3.3:82939665-82939684 | None:intergenic | 50.0% | |
GATGGAGTTGAGATGGTCAG+TGG | + | chr3.3:82938563-82938582 | None:intergenic | 50.0% | |
GGAAACAAGATGAGAGGCGA+TGG | + | chr3.3:82938581-82938600 | None:intergenic | 50.0% | |
TCCAGAAGCTGTTGTTGCGT+GGG | + | chr3.3:82938523-82938542 | None:intergenic | 50.0% | |
TGGGCTGAAGAAGAGGCAAA+TGG | - | chr3.3:82939934-82939953 | MS.gene020418:intron | 50.0% | |
CCAAGTTACGCTCAGCCTCA+TGG | - | chr3.3:82938480-82938499 | MS.gene020418:CDS | 55.0% | |
CCATGAGGCTGAGCGTAACT+TGG | + | chr3.3:82938483-82938502 | None:intergenic | 55.0% | |
CCTCGCCTCTCTTTCATCCA+AGG | - | chr3.3:82938634-82938653 | MS.gene020418:CDS | 55.0% | |
CCTTGGATGAAAGAGAGGCG+AGG | + | chr3.3:82938637-82938656 | None:intergenic | 55.0% | |
GAGAGGCGATGGAGTTGAGA+TGG | + | chr3.3:82938570-82938589 | None:intergenic | 55.0% | |
GTCCAGAAGCTGTTGTTGCG+TGG | + | chr3.3:82938524-82938543 | None:intergenic | 55.0% | |
TCCCACGCAACAACAGCTTC+TGG | - | chr3.3:82938519-82938538 | MS.gene020418:CDS | 55.0% | |
TGAGCACCTGCCCAACAAAG+AGG | + | chr3.3:82940656-82940675 | None:intergenic | 55.0% | |
! | GGTCAGTGGATTTGGATCGG+AGG | + | chr3.3:82938549-82938568 | None:intergenic | 55.0% |
! | TCTGATGCTGCTTCTTCCGG+CGG | - | chr3.3:82938610-82938629 | MS.gene020418:CDS | 55.0% |
CTCATGGCTGCTGCCTCTGA+GGG | - | chr3.3:82938496-82938515 | MS.gene020418:CDS | 60.0% | |
TTGTTGCGTGGGACCCTCAG+AGG | + | chr3.3:82938512-82938531 | None:intergenic | 60.0% | |
! | CTGATGCTGCTTCTTCCGGC+GGG | - | chr3.3:82938611-82938630 | MS.gene020418:CDS | 60.0% |
CCTCAGAGGCAGCAGCCATG+AGG | + | chr3.3:82938498-82938517 | None:intergenic | 65.0% | |
CCTCATGGCTGCTGCCTCTG+AGG | - | chr3.3:82938495-82938514 | MS.gene020418:CDS | 65.0% | |
GAAAGAGAGGCGAGGCCCGC+CGG | + | chr3.3:82938629-82938648 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 82938331 | 82940692 | 82938331 | ID=MS.gene020418 |
chr3.3 | mRNA | 82938331 | 82940692 | 82938331 | ID=MS.gene020418.t1;Parent=MS.gene020418 |
chr3.3 | exon | 82940267 | 82940692 | 82940267 | ID=MS.gene020418.t1.exon1;Parent=MS.gene020418.t1 |
chr3.3 | CDS | 82940267 | 82940692 | 82940267 | ID=cds.MS.gene020418.t1;Parent=MS.gene020418.t1 |
chr3.3 | exon | 82938331 | 82939119 | 82938331 | ID=MS.gene020418.t1.exon2;Parent=MS.gene020418.t1 |
chr3.3 | CDS | 82938331 | 82939119 | 82938331 | ID=cds.MS.gene020418.t1;Parent=MS.gene020418.t1 |
Gene Sequence |
Protein sequence |