Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022696.t1 | XP_003626830.1 | 97.1 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 2.40E-109 | 404.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022696.t1 | O04905 | 83.7 | 196 | 30 | 1 | 13 | 208 | 8 | 201 | 1.9e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022696.t1 | B7FMF1 | 97.1 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 1.7e-109 | 404.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022696 | MS.gene033347 | PPI |
| MS.gene022696 | MS.gene057156 | PPI |
| MS.gene011389 | MS.gene022696 | PPI |
| MS.gene065461 | MS.gene022696 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022696.t1 | MTR_8g009520 | 97.115 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 5.59e-150 | 415 |
| MS.gene022696.t1 | MTR_4g035850 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 3.17e-81 | 241 |
| MS.gene022696.t1 | MTR_5g068940 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 3.50e-81 | 241 |
| MS.gene022696.t1 | MTR_4g035850 | 60.753 | 186 | 73 | 0 | 22 | 207 | 55 | 240 | 9.05e-81 | 241 |
| MS.gene022696.t1 | MTR_4g035170 | 34.375 | 128 | 81 | 2 | 19 | 144 | 85 | 211 | 1.08e-23 | 96.3 |
| MS.gene022696.t1 | MTR_2g461290 | 27.803 | 223 | 129 | 5 | 6 | 201 | 59 | 276 | 1.09e-23 | 98.6 |
| MS.gene022696.t1 | MTR_4g103800 | 26.066 | 211 | 123 | 4 | 24 | 201 | 32 | 242 | 9.73e-20 | 84.3 |
| MS.gene022696.t1 | MTR_1g067050 | 25.888 | 197 | 101 | 4 | 27 | 180 | 59 | 253 | 3.18e-16 | 75.5 |
| MS.gene022696.t1 | MTR_7g100530 | 24.424 | 217 | 122 | 4 | 18 | 193 | 34 | 249 | 1.53e-15 | 73.6 |
| MS.gene022696.t1 | MTR_4g103800 | 32.184 | 87 | 58 | 1 | 24 | 109 | 32 | 118 | 5.72e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022696.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene022696.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene022696.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene022696.t1 | AT5G26667 | 81.553 | 206 | 31 | 2 | 1 | 206 | 1 | 199 | 9.90e-123 | 346 |
| MS.gene022696.t1 | AT3G60180 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 1.61e-108 | 310 |
| MS.gene022696.t1 | AT3G60180 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 1.61e-108 | 310 |
| MS.gene022696.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.14e-78 | 236 |
| MS.gene022696.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.14e-78 | 236 |
| MS.gene022696.t1 | AT3G60961 | 68.421 | 133 | 38 | 1 | 73 | 201 | 1 | 133 | 5.54e-66 | 199 |
| MS.gene022696.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.19e-27 | 108 |
| MS.gene022696.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.90e-27 | 108 |
| MS.gene022696.t1 | AT5G47840 | 30.144 | 209 | 116 | 4 | 20 | 201 | 63 | 268 | 1.76e-26 | 103 |
| MS.gene022696.t1 | AT5G47840 | 37.008 | 127 | 77 | 2 | 20 | 144 | 63 | 188 | 6.26e-26 | 101 |
| MS.gene022696.t1 | AT5G63400 | 27.488 | 211 | 120 | 4 | 24 | 201 | 36 | 246 | 1.59e-20 | 86.7 |
| MS.gene022696.t1 | AT5G50370 | 27.723 | 202 | 112 | 5 | 23 | 191 | 37 | 237 | 4.71e-18 | 80.1 |
| MS.gene022696.t1 | AT2G37250 | 25.238 | 210 | 112 | 3 | 27 | 193 | 57 | 264 | 2.98e-16 | 75.5 |
| MS.gene022696.t1 | AT2G39270 | 27.411 | 197 | 98 | 4 | 27 | 180 | 70 | 264 | 2.69e-15 | 73.2 |
| MS.gene022696.t1 | AT5G63400 | 31.200 | 125 | 82 | 2 | 24 | 144 | 36 | 160 | 6.01e-14 | 67.8 |
| MS.gene022696.t1 | AT5G50370 | 27.072 | 181 | 98 | 5 | 23 | 170 | 37 | 216 | 7.52e-14 | 68.2 |
Find 45 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | 8.4:+78538022 | MS.gene022696:CDS |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | 8.4:-78538353 | None:intergenic |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | 8.4:+78537959 | MS.gene022696:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | 8.4:-78538646 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | 8.4:+78538435 | MS.gene022696:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | 8.4:-78537951 | None:intergenic |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | 8.4:+78538793 | MS.gene022696:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | 8.4:+78537290 | MS.gene022696:CDS |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | 8.4:-78538630 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | 8.4:-78538645 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | 8.4:+78538010 | MS.gene022696:CDS |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | 8.4:+78538639 | MS.gene022696:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | 8.4:-78538991 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | 8.4:+78537913 | MS.gene022696:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | 8.4:+78538382 | MS.gene022696:CDS |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | 8.4:+78538855 | MS.gene022696:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | 8.4:+78538806 | MS.gene022696:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | 8.4:+78538023 | MS.gene022696:CDS |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | 8.4:+78537980 | MS.gene022696:CDS |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | 8.4:+78537920 | MS.gene022696:intron |
| ATTTATTTGTAGGATACAAA+TGG | 0.459331 | 8.4:+78537248 | MS.gene022696:intron |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | 8.4:+78538659 | MS.gene022696:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | 8.4:+78537926 | MS.gene022696:intron |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | 8.4:-78538619 | None:intergenic |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | 8.4:+78538351 | MS.gene022696:CDS |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | 8.4:-78538849 | None:intergenic |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | 8.4:+78537914 | MS.gene022696:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | 8.4:-78538384 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | 8.4:-78537952 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | 8.4:+78538854 | MS.gene022696:CDS |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | 8.4:-78538006 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | 8.4:-78538388 | None:intergenic |
| TGTTATTGAAGCTGCAAACA+AGG | 0.570574 | 8.4:+78536591 | MS.gene022696:CDS |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | 8.4:+78538479 | MS.gene022696:CDS |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | 8.4:+78537997 | MS.gene022696:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | 8.4:-78538848 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | 8.4:-78537290 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | 8.4:+78538993 | MS.gene022696:CDS |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | 8.4:+78538981 | MS.gene022696:CDS |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | 8.4:-78538479 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | 8.4:+78538978 | MS.gene022696:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | 8.4:+78538869 | MS.gene022696:CDS |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | 8.4:+78538666 | MS.gene022696:CDS |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | 8.4:+78538411 | MS.gene022696:CDS |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | 8.4:-78537991 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATGATAAAGTAAA+AGG | - | chr8.4:78539311-78539330 | None:intergenic | 10.0% |
| !! | TAAAATATGATAAAGTAAAA+GGG | - | chr8.4:78539310-78539329 | None:intergenic | 10.0% |
| !! | TTAAATTTAAATAAAGATAC+TGG | + | chr8.4:78539469-78539488 | MS.gene022696:intron | 10.0% |
| !!! | AAAATTTTGAAAATGATATT+GGG | + | chr8.4:78539678-78539697 | MS.gene022696:intron | 10.0% |
| !!! | ATATAATTCTTTTTTTTTTG+CGG | - | chr8.4:78536872-78536891 | None:intergenic | 10.0% |
| !! | AAGAATTAAATAATATGGTT+TGG | + | chr8.4:78536961-78536980 | MS.gene022696:intron | 15.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | + | chr8.4:78538855-78538874 | MS.gene022696:CDS | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | + | chr8.4:78537899-78537918 | MS.gene022696:intron | 15.0% |
| !! | TCTATAGAATTATAGAATTT+GGG | + | chr8.4:78536729-78536748 | MS.gene022696:intron | 15.0% |
| !! | TGAATTCTATAATTAAACAA+AGG | - | chr8.4:78537105-78537124 | None:intergenic | 15.0% |
| !!! | CAAAATTTTGAAAATGATAT+TGG | + | chr8.4:78539677-78539696 | MS.gene022696:intron | 15.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | + | chr8.4:78538435-78538454 | MS.gene022696:CDS | 20.0% |
| !! | AATTATAATTTCAATGTGCT+TGG | - | chr8.4:78539837-78539856 | None:intergenic | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | + | chr8.4:78538197-78538216 | MS.gene022696:intron | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | - | chr8.4:78538109-78538128 | None:intergenic | 20.0% |
| !! | ATTAAGAACAATATTAACAG+TGG | + | chr8.4:78539383-78539402 | MS.gene022696:intron | 20.0% |
| !! | ATTTATTTGTAGGATACAAA+TGG | + | chr8.4:78537248-78537267 | MS.gene022696:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | - | chr8.4:78538851-78538870 | None:intergenic | 20.0% |
| !! | CTCTATAGAATTATAGAATT+TGG | + | chr8.4:78536728-78536747 | MS.gene022696:intron | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | + | chr8.4:78538854-78538873 | MS.gene022696:CDS | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | - | chr8.4:78538110-78538129 | None:intergenic | 20.0% |
| !! | TCAATTCTTCATTTATTTGT+AGG | + | chr8.4:78537238-78537257 | MS.gene022696:intron | 20.0% |
| !! | TTAATCACTTATTTGATTGT+AGG | + | chr8.4:78537168-78537187 | MS.gene022696:intron | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | - | chr8.4:78539213-78539232 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | + | chr8.4:78539099-78539118 | MS.gene022696:intron | 20.0% |
| !!! | AATCAGATTTTCAAAAGAAA+CGG | - | chr8.4:78536677-78536696 | None:intergenic | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | - | chr8.4:78537422-78537441 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | - | chr8.4:78538038-78538057 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTACAATGCATTA+TGG | + | chr8.4:78539329-78539348 | MS.gene022696:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | - | chr8.4:78539098-78539117 | None:intergenic | 20.0% |
| !!! | GCTTTTTTATGTTTATCTTA+AGG | - | chr8.4:78537677-78537696 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | + | chr8.4:78538112-78538131 | MS.gene022696:intron | 20.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | + | chr8.4:78537512-78537531 | MS.gene022696:intron | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | - | chr8.4:78537798-78537817 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | + | chr8.4:78538761-78538780 | MS.gene022696:intron | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | + | chr8.4:78538351-78538370 | MS.gene022696:CDS | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | - | chr8.4:78538699-78538718 | None:intergenic | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | + | chr8.4:78538204-78538223 | MS.gene022696:intron | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | + | chr8.4:78537519-78537538 | MS.gene022696:intron | 25.0% |
| ! | ATTTGATTGTAGGATACTAA+CGG | + | chr8.4:78537178-78537197 | MS.gene022696:intron | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | - | chr8.4:78537372-78537391 | None:intergenic | 25.0% |
| ! | CCAAATATAAAACTAATTGC+CGG | + | chr8.4:78539515-78539534 | MS.gene022696:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | - | chr8.4:78538852-78538871 | None:intergenic | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | - | chr8.4:78537797-78537816 | None:intergenic | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | + | chr8.4:78538762-78538781 | MS.gene022696:intron | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | - | chr8.4:78538700-78538719 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | - | chr8.4:78538622-78538641 | None:intergenic | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | + | chr8.4:78538205-78538224 | MS.gene022696:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | - | chr8.4:78538356-78538375 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | + | chr8.4:78537844-78537863 | MS.gene022696:intron | 25.0% |
| !!! | ATTCAGTATTGATTTCAACT+TGG | + | chr8.4:78537141-78537160 | MS.gene022696:intron | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | - | chr8.4:78537280-78537299 | None:intergenic | 25.0% |
| !!! | GTTTACTTTTTTAGCATCAA+TGG | + | chr8.4:78539751-78539770 | MS.gene022696:intron | 25.0% |
| !!! | GTTTCTTTTGAAAATCTGAT+TGG | + | chr8.4:78536676-78536695 | MS.gene022696:intron | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | - | chr8.4:78538744-78538763 | None:intergenic | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | + | chr8.4:78537905-78537924 | MS.gene022696:intron | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | - | chr8.4:78539036-78539055 | None:intergenic | 25.0% |
| ACGACAACATTGAAACAATA+AGG | + | chr8.4:78538793-78538812 | MS.gene022696:CDS | 30.0% | |
| ACTGGCATAAACAAATTCAT+TGG | + | chr8.4:78539487-78539506 | MS.gene022696:intron | 30.0% | |
| ACTGTAAGAATTTACAGAAG+CGG | - | chr8.4:78539726-78539745 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | + | chr8.4:78537593-78537612 | MS.gene022696:intron | 30.0% | |
| ATTCAAAGGTAAGATGACTA+TGG | - | chr8.4:78537333-78537352 | None:intergenic | 30.0% | |
| ATTGACACAATCTCACTAAT+AGG | - | chr8.4:78537048-78537067 | None:intergenic | 30.0% | |
| ATTTCAACTATGGATGCATT+TGG | - | chr8.4:78537704-78537723 | None:intergenic | 30.0% | |
| CAGGAATTGATGTTTATCTA+TGG | + | chr8.4:78539932-78539951 | MS.gene022696:intron | 30.0% | |
| CATAGATAAACATCAATTCC+TGG | - | chr8.4:78539934-78539953 | None:intergenic | 30.0% | |
| CCAACTGGTATAATTGTATT+CGG | + | chr8.4:78539613-78539632 | MS.gene022696:intron | 30.0% | |
| CTAATTTCCTAAATGCATCA+TGG | + | chr8.4:78538576-78538595 | MS.gene022696:intron | 30.0% | |
| CTATAAACAATCAGTGAAAC+AGG | - | chr8.4:78538085-78538104 | None:intergenic | 30.0% | |
| GATGCATTTAGGAAATTAGA+AGG | - | chr8.4:78538575-78538594 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | + | chr8.4:78537732-78537751 | MS.gene022696:intron | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | + | chr8.4:78537594-78537613 | MS.gene022696:intron | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | - | chr8.4:78537732-78537751 | None:intergenic | 30.0% | |
| TGTTTATCTATGGTATTTGC+AGG | + | chr8.4:78539942-78539961 | MS.gene022696:intron | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | - | chr8.4:78537347-78537366 | None:intergenic | 30.0% | |
| TTTCAGTCCAAAAAATGAGA+AGG | + | chr8.4:78539026-78539045 | MS.gene022696:CDS | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | + | chr8.4:78538745-78538764 | MS.gene022696:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | + | chr8.4:78537960-78537979 | MS.gene022696:CDS | 30.0% |
| ! | GACATTACATTACCTGTTTT+AGG | + | chr8.4:78538954-78538973 | MS.gene022696:intron | 30.0% |
| ! | GTTTTACAATGCATTATGGA+CGG | + | chr8.4:78539333-78539352 | MS.gene022696:intron | 30.0% |
| ! | TCATTGTGCTGTTAAAAATC+AGG | - | chr8.4:78538332-78538351 | None:intergenic | 30.0% |
| ! | TTATGACTTGTCTGACAAAT+TGG | + | chr8.4:78539792-78539811 | MS.gene022696:intron | 30.0% |
| ! | TTTTGTTGGACATTCTATCA+TGG | - | chr8.4:78536929-78536948 | None:intergenic | 30.0% |
| !! | AATAATGATAATGGTACAGG+TGG | + | chr8.4:78537908-78537927 | MS.gene022696:intron | 30.0% |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | + | chr8.4:78538125-78538144 | MS.gene022696:intron | 30.0% |
| !!! | CCGGCAATTAGTTTTATATT+TGG | - | chr8.4:78539518-78539537 | None:intergenic | 30.0% |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | - | chr8.4:78537644-78537663 | None:intergenic | 30.0% |
| AACAATAAGGAAGCGATTCA+AGG | + | chr8.4:78538806-78538825 | MS.gene022696:CDS | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | - | chr8.4:78537825-78537844 | None:intergenic | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | - | chr8.4:78537507-78537526 | None:intergenic | 35.0% | |
| ATGTTGATACACACAAGTCT+AGG | - | chr8.4:78539639-78539658 | None:intergenic | 35.0% | |
| CCGAATACAATTATACCAGT+TGG | - | chr8.4:78539616-78539635 | None:intergenic | 35.0% | |
| GAATTATAGAATTTGGGTCC+CGG | + | chr8.4:78536735-78536754 | MS.gene022696:intron | 35.0% | |
| GCTGGTATACATTTCAACTA+TGG | - | chr8.4:78537714-78537733 | None:intergenic | 35.0% | |
| TCAATTCCTGGAAAACATTG+CGG | - | chr8.4:78539922-78539941 | None:intergenic | 35.0% | |
| TGTTATTGAAGCTGCAAACA+AGG | + | chr8.4:78536591-78536610 | MS.gene022696:CDS | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | - | chr8.4:78537954-78537973 | None:intergenic | 35.0% | |
| TTGGAACTTCCTTAGAATAC+AGG | + | chr8.4:78539811-78539830 | MS.gene022696:intron | 35.0% | |
| ! | ATTTTGTACCTTCCTAGTGT+TGG | - | chr8.4:78539663-78539682 | None:intergenic | 35.0% |
| ! | GCAAATGTTGTCGAACATTT+TGG | + | chr8.4:78537959-78537978 | MS.gene022696:CDS | 35.0% |
| !! | CTACTTTTCTTTGTACCAAC+TGG | + | chr8.4:78539598-78539617 | MS.gene022696:intron | 35.0% |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | + | chr8.4:78537559-78537578 | MS.gene022696:intron | 35.0% |
| !! | TTGTCTTTTCTCAAAAGCAC+AGG | - | chr8.4:78539548-78539567 | None:intergenic | 35.0% |
| AAGCATTATCCCACTAATCG+CGG | - | chr8.4:78537009-78537028 | None:intergenic | 40.0% | |
| ACAAGAAACTCACCAAGACA+TGG | - | chr8.4:78538916-78538935 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | + | chr8.4:78538371-78538390 | MS.gene022696:CDS | 40.0% | |
| ATAGTGTAGGGTCTATTACC+TGG | - | chr8.4:78538687-78538706 | None:intergenic | 40.0% | |
| CAATCAGTGAAACAGGACTA+CGG | - | chr8.4:78538078-78538097 | None:intergenic | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | - | chr8.4:78538391-78538410 | None:intergenic | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | - | chr8.4:78537508-78537527 | None:intergenic | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | - | chr8.4:78537293-78537312 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | + | chr8.4:78537290-78537309 | MS.gene022696:CDS | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | - | chr8.4:78538633-78538652 | None:intergenic | 40.0% | |
| GATAATGCTTGGTTGTGTTG+TGG | + | chr8.4:78537019-78537038 | MS.gene022696:intron | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | - | chr8.4:78538554-78538573 | None:intergenic | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | - | chr8.4:78538942-78538961 | None:intergenic | 40.0% | |
| GTTCGACAACATTTGCACAT+TGG | - | chr8.4:78537955-78537974 | None:intergenic | 40.0% | |
| TGAGCATAGCTCATTTGGAA+GGG | + | chr8.4:78536758-78536777 | MS.gene022696:intron | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | - | chr8.4:78538586-78538605 | None:intergenic | 40.0% | |
| TGTATCAACATGCCAACACT+AGG | + | chr8.4:78539648-78539667 | MS.gene022696:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | + | chr8.4:78538382-78538401 | MS.gene022696:CDS | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | - | chr8.4:78538969-78538988 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | + | chr8.4:78538932-78538951 | MS.gene022696:intron | 40.0% | |
| ! | AGCTGCAAACAAGGTATTCA+TGG | + | chr8.4:78536600-78536619 | MS.gene022696:intron | 40.0% |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | + | chr8.4:78538022-78538041 | MS.gene022696:CDS | 40.0% |
| ! | GAAGCGATTCAAGGTTTTCT+TGG | + | chr8.4:78538815-78538834 | MS.gene022696:CDS | 40.0% |
| ! | GTTGTGTTTCTACCATGTCT+TGG | + | chr8.4:78538901-78538920 | MS.gene022696:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | + | chr8.4:78538023-78538042 | MS.gene022696:CDS | 40.0% |
| ! | TTCAAACCGCAATGTTTTCC+AGG | + | chr8.4:78539913-78539932 | MS.gene022696:intron | 40.0% |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | + | chr8.4:78537558-78537577 | MS.gene022696:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | + | chr8.4:78538993-78539012 | MS.gene022696:CDS | 40.0% |
| !!! | CCTATATTTTGATTGCCCAG+AGG | + | chr8.4:78538630-78538649 | MS.gene022696:CDS | 40.0% |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | + | chr8.4:78538968-78538987 | MS.gene022696:intron | 40.0% |
| ACGACTTCTTAGTAGGAACC+AGG | + | chr8.4:78538666-78538685 | MS.gene022696:CDS | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | - | chr8.4:78538387-78538406 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | + | chr8.4:78538411-78538430 | MS.gene022696:CDS | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | - | chr8.4:78538245-78538264 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | - | chr8.4:78538279-78538298 | None:intergenic | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | - | chr8.4:78538994-78539013 | None:intergenic | 45.0% | |
| GCGATTAGTGGGATAATGCT+TGG | + | chr8.4:78537008-78537027 | MS.gene022696:intron | 45.0% | |
| GGACTACGGATCTATCACTA+AGG | - | chr8.4:78538064-78538083 | None:intergenic | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | - | chr8.4:78538648-78538667 | None:intergenic | 45.0% | |
| GTGAGCATAGCTCATTTGGA+AGG | + | chr8.4:78536757-78536776 | MS.gene022696:intron | 45.0% | |
| TCAACATGCCAACACTAGGA+AGG | + | chr8.4:78539652-78539671 | MS.gene022696:intron | 45.0% | |
| TCCAAATGAGCTATGCTCAC+CGG | - | chr8.4:78536757-78536776 | None:intergenic | 45.0% | |
| TGATTGCCCAGAGGAAGAAA+TGG | + | chr8.4:78538639-78538658 | MS.gene022696:CDS | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | + | chr8.4:78538869-78538888 | MS.gene022696:CDS | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | + | chr8.4:78538659-78538678 | MS.gene022696:CDS | 45.0% | |
| TGTGCTTGGCCTGTATTCTA+AGG | - | chr8.4:78539823-78539842 | None:intergenic | 45.0% | |
| TTTGCGGTCAAATAGCCTAG+TGG | - | chr8.4:78536856-78536875 | None:intergenic | 45.0% | |
| ! | AGCTCTCATGGGAAGCTTTT+TGG | + | chr8.4:78537570-78537589 | MS.gene022696:intron | 45.0% |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | - | chr8.4:78538009-78538028 | None:intergenic | 45.0% |
| ! | TGATGGTTTTCCTCGCAATG+AGG | + | chr8.4:78538452-78538471 | MS.gene022696:CDS | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | + | chr8.4:78537913-78537932 | MS.gene022696:intron | 45.0% |
| !! | AAAAAAAGAATTATATAATT+TGG | + | chr8.4:78536876-78536895 | MS.gene022696:intron | 5.0% |
| !!! | TTTAAAAAAATATTTTTTGT+TGG | - | chr8.4:78536943-78536962 | None:intergenic | 5.0% |
| !!! | TTTTAAAGAATTAAATAATA+TGG | + | chr8.4:78536956-78536975 | MS.gene022696:intron | 5.0% |
| AGCTGAATGAGCGAGGAATC+CGG | - | chr8.4:78536815-78536834 | None:intergenic | 50.0% | |
| CATTGCAGTATGCAGGTGTC+GGG | + | chr8.4:78536781-78536800 | MS.gene022696:intron | 50.0% | |
| CCAAATGAGCTATGCTCACC+GGG | - | chr8.4:78536756-78536775 | None:intergenic | 50.0% | |
| CCACTCTCTCAAATGCTGCA+CGG | - | chr8.4:78538482-78538501 | None:intergenic | 50.0% | |
| CCTCGCTCATTCAGCTTAAG+CGG | + | chr8.4:78536819-78536838 | MS.gene022696:intron | 50.0% | |
| CGTCTCTCCATTTCTTCCTC+TGG | - | chr8.4:78538649-78538668 | None:intergenic | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | - | chr8.4:78538240-78538259 | None:intergenic | 50.0% | |
| CTGCGAGCGGAAATCAAATC+TGG | + | chr8.4:78538010-78538029 | MS.gene022696:CDS | 50.0% | |
| GCATTGCAGTATGCAGGTGT+CGG | + | chr8.4:78536780-78536799 | MS.gene022696:intron | 50.0% | |
| GCGGTCAGGTCAGTACTAAT+AGG | - | chr8.4:78536990-78537009 | None:intergenic | 50.0% | |
| TTATCCCACTAATCGCGGTC+AGG | - | chr8.4:78537004-78537023 | None:intergenic | 50.0% | |
| ! | ATTGCAGTATGCAGGTGTCG+GGG | + | chr8.4:78536782-78536801 | MS.gene022696:intron | 50.0% |
| ! | CAAAAGCACAGGTTGTGAGC+CGG | - | chr8.4:78539537-78539556 | None:intergenic | 50.0% |
| ! | GATAATGGTACAGGTGGTCC+GGG | + | chr8.4:78537914-78537933 | MS.gene022696:intron | 50.0% |
| ! | TGCATCATGGCTTTGCAGAC+TGG | + | chr8.4:78538589-78538608 | MS.gene022696:intron | 50.0% |
| !! | GCGGTGAATTTCTAGCCACT+AGG | + | chr8.4:78536838-78536857 | MS.gene022696:intron | 50.0% |
| ACTGACCTGACCGCGATTAG+TGG | + | chr8.4:78536996-78537015 | MS.gene022696:intron | 55.0% | |
| CCCGGTGAGCATAGCTCATT+TGG | + | chr8.4:78536753-78536772 | MS.gene022696:intron | 55.0% | |
| CCGCTTAAGCTGAATGAGCG+AGG | - | chr8.4:78536822-78536841 | None:intergenic | 55.0% | |
| CCGTGCAGCATTTGAGAGAG+TGG | + | chr8.4:78538479-78538498 | MS.gene022696:CDS | 55.0% | |
| CTGACCTGACCGCGATTAGT+GGG | + | chr8.4:78536997-78537016 | MS.gene022696:intron | 55.0% | |
| GCTGAATGAGCGAGGAATCC+GGG | - | chr8.4:78536814-78536833 | None:intergenic | 55.0% | |
| GGGTTTACTCACCTCAGTGC+TGG | + | chr8.4:78537980-78537999 | MS.gene022696:CDS | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | + | chr8.4:78538978-78538997 | MS.gene022696:CDS | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | - | chr8.4:78538465-78538484 | None:intergenic | 55.0% |
| ! | TGGGTACCTTTTCCACTGCC+CGG | - | chr8.4:78537935-78537954 | None:intergenic | 55.0% |
| !! | GGAAGGGCATTGCAGTATGC+AGG | + | chr8.4:78536774-78536793 | MS.gene022696:intron | 55.0% |
| GCAGAAGGTCACCAGCACTG+AGG | - | chr8.4:78537994-78538013 | None:intergenic | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | + | chr8.4:78538981-78539000 | MS.gene022696:CDS | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | + | chr8.4:78537997-78538016 | MS.gene022696:CDS | 60.0% | |
| GGTGGTCCGGGCAGTGGAAA+AGG | + | chr8.4:78537926-78537945 | MS.gene022696:intron | 65.0% | |
| !! | CAGGTGTCGGGGTTCGAACC+CGG | + | chr8.4:78536793-78536812 | MS.gene022696:intron | 65.0% |
| GGTACAGGTGGTCCGGGCAG+TGG | + | chr8.4:78537920-78537939 | MS.gene022696:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 78536583 | 78539972 | 78536583 | ID=MS.gene022696 |
| chr8.4 | mRNA | 78536583 | 78539972 | 78536583 | ID=MS.gene022696.t1;Parent=MS.gene022696 |
| chr8.4 | exon | 78536583 | 78536612 | 78536583 | ID=MS.gene022696.t1.exon1;Parent=MS.gene022696.t1 |
| chr8.4 | CDS | 78536583 | 78536612 | 78536583 | ID=cds.MS.gene022696.t1;Parent=MS.gene022696.t1 |
| chr8.4 | exon | 78537260 | 78537311 | 78537260 | ID=MS.gene022696.t1.exon2;Parent=MS.gene022696.t1 |
| chr8.4 | CDS | 78537260 | 78537311 | 78537260 | ID=cds.MS.gene022696.t1;Parent=MS.gene022696.t1 |
| chr8.4 | exon | 78537927 | 78538044 | 78537927 | ID=MS.gene022696.t1.exon3;Parent=MS.gene022696.t1 |
| chr8.4 | CDS | 78537927 | 78538044 | 78537927 | ID=cds.MS.gene022696.t1;Parent=MS.gene022696.t1 |
| chr8.4 | exon | 78538344 | 78538500 | 78538344 | ID=MS.gene022696.t1.exon4;Parent=MS.gene022696.t1 |
| chr8.4 | CDS | 78538344 | 78538500 | 78538344 | ID=cds.MS.gene022696.t1;Parent=MS.gene022696.t1 |
| chr8.4 | exon | 78538607 | 78538687 | 78538607 | ID=MS.gene022696.t1.exon5;Parent=MS.gene022696.t1 |
| chr8.4 | CDS | 78538607 | 78538687 | 78538607 | ID=cds.MS.gene022696.t1;Parent=MS.gene022696.t1 |
| chr8.4 | exon | 78538783 | 78538890 | 78538783 | ID=MS.gene022696.t1.exon6;Parent=MS.gene022696.t1 |
| chr8.4 | CDS | 78538783 | 78538890 | 78538783 | ID=cds.MS.gene022696.t1;Parent=MS.gene022696.t1 |
| chr8.4 | exon | 78538976 | 78539047 | 78538976 | ID=MS.gene022696.t1.exon7;Parent=MS.gene022696.t1 |
| chr8.4 | CDS | 78538976 | 78539047 | 78538976 | ID=cds.MS.gene022696.t1;Parent=MS.gene022696.t1 |
| chr8.4 | exon | 78539964 | 78539972 | 78539964 | ID=MS.gene022696.t1.exon8;Parent=MS.gene022696.t1 |
| chr8.4 | CDS | 78539964 | 78539972 | 78539964 | ID=cds.MS.gene022696.t1;Parent=MS.gene022696.t1 |
| Gene Sequence |
| Protein sequence |
