Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023108.t1 | XP_013448414.1 | 87.6 | 396 | 48 | 1 | 1 | 395 | 7 | 402 | 7.70E-194 | 686.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023108.t1 | Q9S7T8 | 51.9 | 391 | 182 | 5 | 6 | 393 | 3 | 390 | 1.0e-106 | 388.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023108.t1 | A0A072TZ50 | 87.6 | 396 | 48 | 1 | 1 | 395 | 7 | 402 | 5.6e-194 | 686.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene023108 | PPI |
| MS.gene031697 | MS.gene023108 | PPI |
| MS.gene023108 | MS.gene045585 | PPI |
| MS.gene065945 | MS.gene023108 | PPI |
| MS.gene023108 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023108.t1 | MTR_7g050750 | 88.384 | 396 | 45 | 1 | 1 | 395 | 1 | 396 | 0.0 | 688 |
| MS.gene023108.t1 | MTR_7g451890 | 86.869 | 396 | 51 | 1 | 1 | 395 | 7 | 402 | 0.0 | 676 |
| MS.gene023108.t1 | MTR_7g047780 | 87.626 | 396 | 48 | 1 | 1 | 395 | 7 | 402 | 0.0 | 673 |
| MS.gene023108.t1 | MTR_7g050810 | 84.772 | 394 | 59 | 1 | 3 | 395 | 11 | 404 | 0.0 | 653 |
| MS.gene023108.t1 | MTR_3g101180 | 64.885 | 393 | 131 | 3 | 8 | 393 | 6 | 398 | 2.96e-178 | 502 |
| MS.gene023108.t1 | MTR_8g461160 | 63.010 | 392 | 144 | 1 | 4 | 394 | 2 | 393 | 1.14e-173 | 490 |
| MS.gene023108.t1 | MTR_3g101130 | 63.384 | 396 | 136 | 5 | 2 | 395 | 1 | 389 | 1.49e-170 | 482 |
| MS.gene023108.t1 | MTR_4g045707 | 61.735 | 392 | 139 | 4 | 7 | 395 | 5 | 388 | 6.28e-168 | 475 |
| MS.gene023108.t1 | MTR_3g101010 | 63.171 | 391 | 139 | 3 | 6 | 395 | 3 | 389 | 1.70e-167 | 474 |
| MS.gene023108.t1 | MTR_7g050830 | 76.803 | 319 | 42 | 3 | 3 | 300 | 11 | 318 | 2.95e-167 | 471 |
| MS.gene023108.t1 | MTR_3g018740 | 62.148 | 391 | 140 | 4 | 6 | 394 | 3 | 387 | 4.05e-165 | 468 |
| MS.gene023108.t1 | MTR_8g027395 | 59.949 | 392 | 148 | 3 | 5 | 395 | 14 | 397 | 2.10e-160 | 456 |
| MS.gene023108.t1 | MTR_3g048000 | 58.098 | 389 | 133 | 6 | 9 | 393 | 28 | 390 | 2.51e-150 | 431 |
| MS.gene023108.t1 | MTR_4g088525 | 59.946 | 372 | 132 | 3 | 28 | 393 | 7 | 367 | 4.93e-150 | 429 |
| MS.gene023108.t1 | MTR_3g101030 | 56.824 | 403 | 145 | 6 | 14 | 395 | 35 | 429 | 9.19e-150 | 431 |
| MS.gene023108.t1 | MTR_8g027420 | 56.378 | 392 | 151 | 4 | 5 | 395 | 3 | 375 | 6.80e-148 | 424 |
| MS.gene023108.t1 | MTR_2g045980 | 56.091 | 394 | 159 | 5 | 6 | 394 | 3 | 387 | 6.66e-145 | 417 |
| MS.gene023108.t1 | MTR_2g046030 | 55.838 | 394 | 160 | 5 | 6 | 394 | 3 | 387 | 2.97e-144 | 415 |
| MS.gene023108.t1 | MTR_3g101200 | 55.980 | 393 | 145 | 5 | 2 | 393 | 25 | 390 | 7.50e-140 | 404 |
| MS.gene023108.t1 | MTR_3g101050 | 56.848 | 387 | 139 | 5 | 12 | 393 | 33 | 396 | 2.89e-139 | 403 |
| MS.gene023108.t1 | MTR_4g088535 | 55.641 | 390 | 148 | 4 | 2 | 390 | 1 | 366 | 2.34e-137 | 397 |
| MS.gene023108.t1 | MTR_3g015620 | 55.867 | 392 | 144 | 6 | 6 | 394 | 14 | 379 | 9.92e-135 | 390 |
| MS.gene023108.t1 | MTR_3g101190 | 53.743 | 374 | 107 | 4 | 23 | 395 | 4 | 312 | 6.04e-128 | 371 |
| MS.gene023108.t1 | MTR_3g102920 | 51.928 | 389 | 138 | 6 | 12 | 393 | 62 | 408 | 3.78e-125 | 367 |
| MS.gene023108.t1 | MTR_3g100995 | 61.719 | 256 | 93 | 2 | 140 | 395 | 14 | 264 | 2.09e-111 | 327 |
| MS.gene023108.t1 | MTR_3g018747 | 59.696 | 263 | 88 | 4 | 133 | 394 | 9 | 254 | 8.37e-100 | 297 |
| MS.gene023108.t1 | MTR_3g015760 | 61.132 | 265 | 93 | 4 | 133 | 394 | 23 | 280 | 8.63e-98 | 293 |
| MS.gene023108.t1 | MTR_3g100010 | 50.794 | 315 | 106 | 3 | 30 | 310 | 37 | 336 | 2.09e-97 | 294 |
| MS.gene023108.t1 | MTR_3g111160 | 59.735 | 226 | 81 | 4 | 174 | 395 | 1 | 220 | 6.25e-82 | 250 |
| MS.gene023108.t1 | MTR_3g114310 | 39.578 | 379 | 208 | 9 | 32 | 395 | 38 | 410 | 2.76e-81 | 255 |
| MS.gene023108.t1 | MTR_3g100520 | 58.036 | 224 | 77 | 3 | 174 | 395 | 1 | 209 | 3.79e-81 | 248 |
| MS.gene023108.t1 | MTR_3g101110 | 56.356 | 236 | 75 | 3 | 136 | 369 | 71 | 280 | 5.93e-78 | 242 |
| MS.gene023108.t1 | MTR_3g099970 | 59.184 | 196 | 63 | 2 | 133 | 328 | 20 | 198 | 4.31e-73 | 227 |
| MS.gene023108.t1 | MTR_2g046410 | 53.953 | 215 | 89 | 3 | 185 | 394 | 139 | 348 | 3.71e-70 | 224 |
| MS.gene023108.t1 | MTR_3g101150 | 65.823 | 158 | 50 | 2 | 239 | 393 | 1 | 157 | 6.82e-67 | 209 |
| MS.gene023108.t1 | MTR_3g101020 | 52.910 | 189 | 60 | 2 | 207 | 395 | 1 | 160 | 4.41e-60 | 192 |
| MS.gene023108.t1 | MTR_3g102870 | 54.140 | 157 | 72 | 0 | 196 | 352 | 1 | 157 | 3.07e-55 | 180 |
| MS.gene023108.t1 | MTR_3g111150 | 52.809 | 178 | 59 | 3 | 10 | 187 | 1 | 153 | 3.92e-54 | 177 |
| MS.gene023108.t1 | MTR_3g100990 | 57.812 | 128 | 51 | 2 | 7 | 133 | 4 | 129 | 1.16e-35 | 137 |
| MS.gene023108.t1 | MTR_3g101140 | 48.571 | 105 | 53 | 1 | 291 | 395 | 13 | 116 | 3.22e-22 | 91.3 |
| MS.gene023108.t1 | MTR_4g093550 | 49.425 | 87 | 42 | 1 | 6 | 92 | 4 | 88 | 3.44e-15 | 71.2 |
| MS.gene023108.t1 | MTR_6g046890 | 56.250 | 64 | 28 | 0 | 25 | 88 | 14 | 77 | 9.83e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023108.t1 | AT1G47710 | 51.918 | 391 | 182 | 5 | 6 | 393 | 3 | 390 | 1.21e-136 | 396 |
| MS.gene023108.t1 | AT1G47710 | 51.918 | 391 | 182 | 5 | 6 | 393 | 30 | 417 | 4.18e-136 | 395 |
| MS.gene023108.t1 | AT2G25240 | 47.815 | 389 | 188 | 8 | 8 | 392 | 5 | 382 | 2.52e-116 | 344 |
| MS.gene023108.t1 | AT2G26390 | 44.898 | 392 | 199 | 6 | 8 | 392 | 5 | 386 | 6.58e-113 | 335 |
| MS.gene023108.t1 | AT3G45220 | 42.785 | 395 | 207 | 6 | 8 | 392 | 5 | 390 | 5.15e-107 | 320 |
| MS.gene023108.t1 | AT1G64030 | 44.246 | 391 | 192 | 6 | 6 | 392 | 3 | 371 | 1.23e-102 | 309 |
| MS.gene023108.t1 | AT1G62170 | 43.396 | 371 | 174 | 6 | 31 | 392 | 88 | 431 | 1.02e-98 | 301 |
| MS.gene023108.t1 | AT2G14540 | 43.478 | 391 | 193 | 7 | 6 | 392 | 31 | 397 | 3.54e-95 | 291 |
| MS.gene023108.t1 | AT2G35580 | 44.475 | 362 | 171 | 9 | 38 | 392 | 33 | 371 | 1.44e-93 | 285 |
| MS.gene023108.t1 | AT1G62170 | 40.347 | 404 | 172 | 8 | 31 | 392 | 88 | 464 | 6.90e-92 | 284 |
| MS.gene023108.t1 | AT1G64010 | 44.796 | 221 | 94 | 5 | 174 | 392 | 1 | 195 | 7.09e-59 | 190 |
| MS.gene023108.t1 | AT1G64010 | 44.660 | 206 | 86 | 5 | 189 | 392 | 2 | 181 | 5.77e-52 | 172 |
| MS.gene023108.t1 | AT1G63280 | 54.237 | 118 | 50 | 2 | 130 | 245 | 5 | 120 | 2.97e-35 | 126 |
| MS.gene023108.t1 | AT1G62160 | 41.304 | 184 | 77 | 4 | 213 | 392 | 62 | 218 | 7.97e-33 | 123 |
| MS.gene023108.t1 | AT1G51330 | 50.893 | 112 | 52 | 3 | 131 | 239 | 29 | 140 | 3.94e-26 | 104 |
| MS.gene023108.t1 | AT1G64020 | 34.862 | 109 | 69 | 2 | 16 | 123 | 13 | 120 | 1.17e-12 | 64.7 |
Find 83 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAAAAGAAGTGAATTTA+TGG | 0.175161 | 7.2:-51606413 | MS.gene023108:CDS |
| AGTAAAGAACTTTATGTTTC+CGG | 0.199606 | 7.2:-51605871 | MS.gene023108:CDS |
| TCTGAGTTGCTAAAGAAATT+AGG | 0.232348 | 7.2:-51605949 | MS.gene023108:CDS |
| CCATCTTTGCCTTGTTTATA+AGG | 0.244454 | 7.2:+51606144 | None:intergenic |
| AGCTTCTGATTCTGAGTTCT+TGG | 0.256911 | 7.2:-51606052 | MS.gene023108:CDS |
| GTCAAACCTCCCATAGAAAA+AGG | 0.264352 | 7.2:+51605916 | None:intergenic |
| ATCATTCTTGCTGGTCATAA+AGG | 0.270660 | 7.2:+51606209 | None:intergenic |
| AGCACGGTGTTGAGCGATAA+TGG | 0.288255 | 7.2:+51608068 | None:intergenic |
| ACATAAAGTTCTTTACTAAT+AGG | 0.293337 | 7.2:+51605877 | None:intergenic |
| CACCTTTCCAACAAAGAGTA+TGG | 0.347373 | 7.2:+51605678 | None:intergenic |
| CTTGTTTCTTCTGTGCTCTC+CGG | 0.362058 | 7.2:-51607945 | MS.gene023108:CDS |
| TTGTTTCTTCTGTGCTCTCC+GGG | 0.381696 | 7.2:-51607944 | MS.gene023108:CDS |
| GACGAACTGATCATTCTTGC+TGG | 0.397498 | 7.2:+51606200 | None:intergenic |
| AAGTGGAAGTAGGCAAGTTC+CGG | 0.403387 | 7.2:-51606008 | MS.gene023108:CDS |
| CCTTGCTTGTCTTACGTCAA+TGG | 0.408285 | 7.2:-51607906 | MS.gene023108:CDS |
| CCTTATAAACAAGGCAAAGA+TGG | 0.409361 | 7.2:-51606144 | MS.gene023108:CDS |
| GTGCTCTCCGGGGCTCGCAC+TGG | 0.410447 | 7.2:-51607933 | MS.gene023108:CDS |
| TGTTCATGGAAACGTTAGTT+AGG | 0.423264 | 7.2:+51608147 | None:intergenic |
| GCACGGTGTTGAGCGATAAT+GGG | 0.423550 | 7.2:+51608069 | None:intergenic |
| TCAGAAGAAATATTGAATCT+TGG | 0.431161 | 7.2:+51605982 | None:intergenic |
| AGTGGAACCATACTCTTTGT+TGG | 0.431916 | 7.2:-51605685 | MS.gene023108:CDS |
| AGTAGTCATAAGTTGTTTGA+AGG | 0.434567 | 7.2:+51607848 | None:intergenic |
| GTTGTCAGCTTTGATTGATA+AGG | 0.435094 | 7.2:-51606076 | MS.gene023108:CDS |
| GTCATAAGTTGTTTGAAGGA+AGG | 0.435473 | 7.2:+51607852 | None:intergenic |
| GAGAAAAGAAGTGAATTTAT+GGG | 0.437617 | 7.2:-51606412 | MS.gene023108:CDS |
| AGTGAATTTATGGGCTGAAA+AGG | 0.440578 | 7.2:-51606403 | MS.gene023108:CDS |
| TTTCTTCCAGATGCAAAAGA+AGG | 0.445127 | 7.2:-51606099 | MS.gene023108:CDS |
| GTCTTACGTCAATGGTGTGT+GGG | 0.450358 | 7.2:-51607898 | MS.gene023108:CDS |
| CTCTCCGGGGCTCGCACTGG+TGG | 0.452692 | 7.2:-51607930 | MS.gene023108:CDS |
| AAATATTGAATCTTGGAATC+CGG | 0.456839 | 7.2:+51605989 | None:intergenic |
| TCAATTGGAGGGACCGGAGG+GGG | 0.459884 | 7.2:+51605754 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.465672 | 7.2:-51605832 | MS.gene023108:CDS |
| TGACTGTTGGCATGGTAGGC+GGG | 0.465714 | 7.2:-51605792 | MS.gene023108:CDS |
| TTTCTCCAGTCTGAATCAAC+CGG | 0.467958 | 7.2:-51607993 | MS.gene023108:CDS |
| TCATTCTTGCTGGTCATAAA+GGG | 0.472999 | 7.2:+51606210 | None:intergenic |
| AAGGTGGTCAATCCTCTTGA+TGG | 0.480370 | 7.2:-51605661 | MS.gene023108:CDS |
| TTGAGTGGGACCCTCGGAGC+CGG | 0.490233 | 7.2:+51608031 | None:intergenic |
| TGGTCAGCTACAAAGTCAAT+TGG | 0.500762 | 7.2:+51605739 | None:intergenic |
| CTTATAAACAAGGCAAAGAT+GGG | 0.509106 | 7.2:-51606143 | MS.gene023108:CDS |
| CTTGGTCTTCCTTATAAACA+AGG | 0.520368 | 7.2:-51606153 | MS.gene023108:CDS |
| AACCATACTCTTTGTTGGAA+AGG | 0.525947 | 7.2:-51605680 | MS.gene023108:CDS |
| ATGATCGCTGCCGGCTCCGA+GGG | 0.526010 | 7.2:-51608041 | MS.gene023108:CDS |
| ACAAAGTCAATTGGAGGGAC+CGG | 0.526884 | 7.2:+51605748 | None:intergenic |
| TGGGCTGAAAAGGAGACAAA+AGG | 0.527591 | 7.2:-51606393 | MS.gene023108:CDS |
| GTGACTGTTGGCATGGTAGG+CGG | 0.527948 | 7.2:-51605793 | MS.gene023108:CDS |
| GCAAATGCACTATACTTCAA+AGG | 0.528381 | 7.2:-51606312 | MS.gene023108:CDS |
| GCGGTGACTGTTGGCATGGT+AGG | 0.529850 | 7.2:-51605796 | MS.gene023108:CDS |
| AGGTCCACCAGTGCGAGCCC+CGG | 0.531653 | 7.2:+51607926 | None:intergenic |
| AGTCAATTGGAGGGACCGGA+GGG | 0.531920 | 7.2:+51605752 | None:intergenic |
| GAAAGACCTCTGAAATATGC+CGG | 0.537794 | 7.2:+51605852 | None:intergenic |
| GCATGAGGATTTGAGATCAC+CGG | 0.540696 | 7.2:+51607974 | None:intergenic |
| GTCAATTGGAGGGACCGGAG+GGG | 0.545085 | 7.2:+51605753 | None:intergenic |
| TTCTTCCAGATGCAAAAGAA+GGG | 0.553642 | 7.2:-51606098 | MS.gene023108:CDS |
| GATCACCGGTTGATTCAGAC+TGG | 0.553675 | 7.2:+51607988 | None:intergenic |
| TATGATCGCTGCCGGCTCCG+AGG | 0.555454 | 7.2:-51608042 | MS.gene023108:CDS |
| TCTCAATGGCAAGTCAGTAA+AGG | 0.555621 | 7.2:-51606235 | MS.gene023108:CDS |
| GGTTGATTCAGACTGGAGAA+AGG | 0.558446 | 7.2:+51607995 | None:intergenic |
| ATGTTTCCGGCATATTTCAG+AGG | 0.565438 | 7.2:-51605858 | MS.gene023108:CDS |
| AAAGCTGCAGCGGTGACTGT+TGG | 0.567765 | 7.2:-51605805 | MS.gene023108:CDS |
| CATACTCTTTGTTGGAAAGG+TGG | 0.571116 | 7.2:-51605677 | MS.gene023108:CDS |
| AGGTGGTCAATCCTCTTGAT+GGG | 0.571602 | 7.2:-51605660 | MS.gene023108:CDS |
| AGAAACAAGCTGAGAGCATG+AGG | 0.573714 | 7.2:+51607959 | None:intergenic |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.574991 | 7.2:+51607861 | None:intergenic |
| TGTCTTACGTCAATGGTGTG+TGG | 0.580488 | 7.2:-51607899 | MS.gene023108:CDS |
| GTTAAGCTGTGAACTAAGCC+AGG | 0.581528 | 7.2:+51606348 | None:intergenic |
| CACTATACTTCAAAGGAGTG+TGG | 0.582450 | 7.2:-51606305 | MS.gene023108:CDS |
| TTACTGACTTGCCATTGAGA+AGG | 0.583004 | 7.2:+51606238 | None:intergenic |
| AAGTCAATTGGAGGGACCGG+AGG | 0.584759 | 7.2:+51605751 | None:intergenic |
| ATTACAAATCTTCTTCCACC+TGG | 0.585361 | 7.2:-51606366 | MS.gene023108:CDS |
| GTGCTCAGTATGATCGCTGC+CGG | 0.586534 | 7.2:-51608050 | MS.gene023108:CDS |
| TTTAACAATCACCCATCAAG+AGG | 0.594155 | 7.2:+51605649 | None:intergenic |
| CTTGTTTATAAGGAAGACCA+AGG | 0.603135 | 7.2:+51606154 | None:intergenic |
| TCAGCTACAAAGTCAATTGG+AGG | 0.607657 | 7.2:+51605742 | None:intergenic |
| AGAAAAGGAGTACCTTGTTG+AGG | 0.607756 | 7.2:+51607793 | None:intergenic |
| TGAAGTTGATTTCCTCAACA+AGG | 0.614896 | 7.2:-51607805 | MS.gene023108:intron |
| CACGGTGTTGAGCGATAATG+GGG | 0.618955 | 7.2:+51608070 | None:intergenic |
| TGTTTCTTCTGTGCTCTCCG+GGG | 0.647438 | 7.2:-51607943 | MS.gene023108:CDS |
| TGCAGCGGTGACTGTTGGCA+TGG | 0.650418 | 7.2:-51605800 | MS.gene023108:CDS |
| GGCAGCGATCATACTGAGCA+CGG | 0.656326 | 7.2:+51608052 | None:intergenic |
| CAGCTACAAAGTCAATTGGA+GGG | 0.661369 | 7.2:+51605743 | None:intergenic |
| AGAAGGTACGAAAGCTGCAG+CGG | 0.664748 | 7.2:-51605815 | MS.gene023108:CDS |
| AAGCTGTGAACTAAGCCAGG+TGG | 0.725274 | 7.2:+51606351 | None:intergenic |
| CCATTGACGTAAGACAAGCA+AGG | 0.746622 | 7.2:+51607906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTTTACTTATATTAT+TGG | + | chr7.2:51607313-51607332 | None:intergenic | 10.0% |
| !!! | TAAAAATTAAATTTGCTTAA+AGG | + | chr7.2:51606860-51606879 | None:intergenic | 10.0% |
| !!! | TTAAGTTATTATTTTTTGAA+TGG | - | chr7.2:51606536-51606555 | MS.gene023108:intron | 10.0% |
| !! | TTCTTAATTACTTGATTAAT+TGG | - | chr7.2:51606641-51606660 | MS.gene023108:intron | 15.0% |
| !!! | ATAAGTTTGTTATTCATAAT+TGG | + | chr7.2:51607018-51607037 | None:intergenic | 15.0% |
| !!! | TCAAATGATTTATTTTAAGA+TGG | - | chr7.2:51607364-51607383 | MS.gene023108:intron | 15.0% |
| !!! | TTTTAAATTTAGATGCATTA+AGG | - | chr7.2:51606370-51606389 | MS.gene023108:CDS | 15.0% |
| !! | AACTAATATACACAACTATT+TGG | - | chr7.2:51606444-51606463 | MS.gene023108:intron | 20.0% |
| !! | AAGATTGAAAAAGAAAGAAA+AGG | + | chr7.2:51606064-51606083 | None:intergenic | 20.0% |
| !! | ACATAAAGTTCTTTACTAAT+AGG | + | chr7.2:51607965-51607984 | None:intergenic | 20.0% |
| !! | TAATCAAGTAATTAAGAAAG+AGG | + | chr7.2:51606639-51606658 | None:intergenic | 20.0% |
| !! | TACAATTGATACTTATTTGA+AGG | - | chr7.2:51607394-51607413 | MS.gene023108:intron | 20.0% |
| !!! | TAGAATGAATACTGATATTT+TGG | + | chr7.2:51606680-51606699 | None:intergenic | 20.0% |
| ! | AAATATTGAATCTTGGAATC+CGG | + | chr7.2:51607853-51607872 | None:intergenic | 25.0% |
| ! | AGTAAAGAACTTTATGTTTC+CGG | - | chr7.2:51607968-51607987 | MS.gene023108:CDS | 25.0% |
| ! | ATATGACATTATTGATATGC+GGG | + | chr7.2:51606262-51606281 | None:intergenic | 25.0% |
| ! | CAAAACAAATAATGTGACTT+TGG | - | chr7.2:51607078-51607097 | MS.gene023108:intron | 25.0% |
| ! | CTCTGATCAGAAATAAAAAA+GGG | + | chr7.2:51608126-51608145 | None:intergenic | 25.0% |
| ! | GAGAAAAGAAGTGAATTTAT+GGG | - | chr7.2:51607427-51607446 | MS.gene023108:intron | 25.0% |
| ! | GATATGACATTATTGATATG+CGG | + | chr7.2:51606263-51606282 | None:intergenic | 25.0% |
| ! | TCAGAAGAAATATTGAATCT+TGG | + | chr7.2:51607860-51607879 | None:intergenic | 25.0% |
| ! | TCTCTGATCAGAAATAAAAA+AGG | + | chr7.2:51608127-51608146 | None:intergenic | 25.0% |
| ! | TGAGAAAAGAAGTGAATTTA+TGG | - | chr7.2:51607426-51607445 | MS.gene023108:intron | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | - | chr7.2:51608007-51608026 | MS.gene023108:CDS | 25.0% |
| ! | TTGTATTCAAAATGAGTCAA+AGG | + | chr7.2:51607190-51607209 | None:intergenic | 25.0% |
| !! | ATTATTGGCACATATTTTGT+TGG | + | chr7.2:51607298-51607317 | None:intergenic | 25.0% |
| !! | TTGACTTTACCTTTTTCTAT+GGG | - | chr7.2:51607914-51607933 | MS.gene023108:CDS | 25.0% |
| !!! | ATTGACTTTACCTTTTTCTA+TGG | - | chr7.2:51607913-51607932 | MS.gene023108:CDS | 25.0% |
| !!! | ATTTTGTTGGTAAATCAGTT+AGG | + | chr7.2:51607285-51607304 | None:intergenic | 25.0% |
| !!! | TTTGATGGTTTTAAAATCCT+TGG | - | chr7.2:51607668-51607687 | MS.gene023108:intron | 25.0% |
| !!! | TTTTGTTGGTAAATCAGTTA+GGG | + | chr7.2:51607284-51607303 | None:intergenic | 25.0% |
| !!! | TTTTTTCATAAGCAGATTGA+GGG | - | chr7.2:51606737-51606756 | MS.gene023108:intron | 25.0% |
| !!! | TTTTTTGAATGGATTGTGAT+CGG | - | chr7.2:51606547-51606566 | MS.gene023108:intron | 25.0% |
| !!! | TTTTTTTCATAAGCAGATTG+AGG | - | chr7.2:51606736-51606755 | MS.gene023108:intron | 25.0% |
| ACACTAATGTCGATAATGTT+AGG | + | chr7.2:51606604-51606623 | None:intergenic | 30.0% | |
| AGATGCATTAAGGACTATTA+TGG | - | chr7.2:51606380-51606399 | MS.gene023108:CDS | 30.0% | |
| AGTAGTCATAAGTTGTTTGA+AGG | + | chr7.2:51605994-51606013 | None:intergenic | 30.0% | |
| CTAATGTCTTGACAATTAAC+TGG | - | chr7.2:51607232-51607251 | MS.gene023108:intron | 30.0% | |
| CTTATAAACAAGGCAAAGAT+GGG | - | chr7.2:51607696-51607715 | MS.gene023108:intron | 30.0% | |
| GGATCAATAAATCTCACTAT+TGG | - | chr7.2:51606962-51606981 | MS.gene023108:intron | 30.0% | |
| TAGTCTCTAACGTTAAACTA+TGG | + | chr7.2:51606321-51606340 | None:intergenic | 30.0% | |
| TCCTTATAAAAAAAGAGTCC+CGG | - | chr7.2:51606285-51606304 | MS.gene023108:CDS | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | - | chr7.2:51607890-51607909 | MS.gene023108:CDS | 30.0% | |
| TGAACCATTAATGAGATTTG+CGG | - | chr7.2:51606571-51606590 | MS.gene023108:intron | 30.0% | |
| TGATCAGAAATAAAAAAGGG+TGG | + | chr7.2:51608123-51608142 | None:intergenic | 30.0% | |
| TTTGATTGAGTACACAATCA+AGG | - | chr7.2:51606342-51606361 | MS.gene023108:CDS | 30.0% | |
| ! | AAGGAGTTGATTGTGTTTAA+AGG | + | chr7.2:51606791-51606810 | None:intergenic | 30.0% |
| ! | CTCACAATCATAGACTATTT+TGG | + | chr7.2:51606196-51606215 | None:intergenic | 30.0% |
| ! | CTTTTCTCTGAGTTTTTGAT+TGG | + | chr7.2:51605736-51605755 | None:intergenic | 30.0% |
| ! | TTAGGTTTGTGAGTGATTTT+CGG | + | chr7.2:51605677-51605696 | None:intergenic | 30.0% |
| ! | TTTGTTGGTAAATCAGTTAG+GGG | + | chr7.2:51607283-51607302 | None:intergenic | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | - | chr7.2:51607590-51607609 | MS.gene023108:intron | 30.0% |
| AACCATACTCTTTGTTGGAA+AGG | - | chr7.2:51608159-51608178 | MS.gene023108:CDS | 35.0% | |
| AGTGAGATTTATTGATCCCA+CGG | + | chr7.2:51606960-51606979 | None:intergenic | 35.0% | |
| ATAAGCAGATTGAGGGATAA+GGG | - | chr7.2:51606744-51606763 | MS.gene023108:intron | 35.0% | |
| ATCATTCTTGCTGGTCATAA+AGG | + | chr7.2:51607633-51607652 | None:intergenic | 35.0% | |
| ATGTCGATAATGTTAGGCTA+AGG | + | chr7.2:51606598-51606617 | None:intergenic | 35.0% | |
| ATTACAAATCTTCTTCCACC+TGG | - | chr7.2:51607473-51607492 | MS.gene023108:intron | 35.0% | |
| CAATCTTCCTCGTAAAAAAG+TGG | - | chr7.2:51607814-51607833 | MS.gene023108:CDS | 35.0% | |
| CCTTATAAACAAGGCAAAGA+TGG | - | chr7.2:51607695-51607714 | MS.gene023108:intron | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | + | chr7.2:51607688-51607707 | None:intergenic | 35.0% | |
| GCAAATGCACTATACTTCAA+AGG | - | chr7.2:51607527-51607546 | MS.gene023108:intron | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | + | chr7.2:51605990-51606009 | None:intergenic | 35.0% | |
| GTCTTGACAATTAACTGGAT+GGG | - | chr7.2:51607237-51607256 | MS.gene023108:intron | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | - | chr7.2:51607931-51607950 | MS.gene023108:CDS | 35.0% | |
| TCATTCTTGCTGGTCATAAA+GGG | + | chr7.2:51607632-51607651 | None:intergenic | 35.0% | |
| TGTCTTGACAATTAACTGGA+TGG | - | chr7.2:51607236-51607255 | MS.gene023108:intron | 35.0% | |
| TGTTCATGGAAACGTTAGTT+AGG | + | chr7.2:51605695-51605714 | None:intergenic | 35.0% | |
| TTATGTTTAATGCAACCTGC+TGG | + | chr7.2:51606907-51606926 | None:intergenic | 35.0% | |
| TTCTTCCAGATGCAAAAGAA+GGG | - | chr7.2:51607741-51607760 | MS.gene023108:intron | 35.0% | |
| TTTCTTCCAGATGCAAAAGA+AGG | - | chr7.2:51607740-51607759 | MS.gene023108:intron | 35.0% | |
| ! | ACTTTACCTTTTTCTATGGG+AGG | - | chr7.2:51607917-51607936 | MS.gene023108:CDS | 35.0% |
| ! | AGTGAATTTATGGGCTGAAA+AGG | - | chr7.2:51607436-51607455 | MS.gene023108:intron | 35.0% |
| ! | CAAGTGTTTTGTGATGTTCA+TGG | + | chr7.2:51605709-51605728 | None:intergenic | 35.0% |
| ! | CTGATCAGAGAAGATTTTAG+TGG | - | chr7.2:51608136-51608155 | MS.gene023108:CDS | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | - | chr7.2:51607686-51607705 | MS.gene023108:intron | 35.0% |
| ! | GTTGTCAGCTTTGATTGATA+AGG | - | chr7.2:51607763-51607782 | MS.gene023108:intron | 35.0% |
| ! | GTTTGCTACTTCAAAAACGA+AGG | - | chr7.2:51607565-51607584 | MS.gene023108:intron | 35.0% |
| ! | TGAAGTTGATTTCCTCAACA+AGG | - | chr7.2:51606034-51606053 | MS.gene023108:CDS | 35.0% |
| !! | ACTTGCTGTTGTGCATAATT+TGG | - | chr7.2:51607140-51607159 | MS.gene023108:intron | 35.0% |
| !! | CCATCTTTGCCTTGTTTATA+AGG | + | chr7.2:51607698-51607717 | None:intergenic | 35.0% |
| !! | CTGGTTTTTGTGTTGGTATA+TGG | + | chr7.2:51606888-51606907 | None:intergenic | 35.0% |
| !! | CTTGCTGTTGTGCATAATTT+GGG | - | chr7.2:51607141-51607160 | MS.gene023108:intron | 35.0% |
| !!! | ACCGGGACTCTTTTTTTATA+AGG | + | chr7.2:51606289-51606308 | None:intergenic | 35.0% |
| AAAAAGAGTCCCGGTCATAT+CGG | - | chr7.2:51606294-51606313 | MS.gene023108:CDS | 40.0% | |
| AAACTATGGACCGATATGAC+CGG | + | chr7.2:51606307-51606326 | None:intergenic | 40.0% | |
| AGCTTCTGATTCTGAGTTCT+TGG | - | chr7.2:51607787-51607806 | MS.gene023108:intron | 40.0% | |
| AGGACCGCAAATCTCATTAA+TGG | + | chr7.2:51606578-51606597 | None:intergenic | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | - | chr7.2:51608154-51608173 | MS.gene023108:CDS | 40.0% | |
| ATACCAACACAAAAACCAGC+AGG | - | chr7.2:51606889-51606908 | MS.gene023108:intron | 40.0% | |
| ATGCTGTTGTGCATAATGCA+AGG | - | chr7.2:51607036-51607055 | MS.gene023108:intron | 40.0% | |
| ATGTGCCATGCTTAGAGTTT+AGG | - | chr7.2:51606090-51606109 | MS.gene023108:CDS | 40.0% | |
| ATGTTTCCGGCATATTTCAG+AGG | - | chr7.2:51607981-51608000 | MS.gene023108:CDS | 40.0% | |
| CACCTTTCCAACAAAGAGTA+TGG | + | chr7.2:51608164-51608183 | None:intergenic | 40.0% | |
| CACTATACTTCAAAGGAGTG+TGG | - | chr7.2:51607534-51607553 | MS.gene023108:intron | 40.0% | |
| CAGCTACAAAGTCAATTGGA+GGG | + | chr7.2:51608099-51608118 | None:intergenic | 40.0% | |
| CATAAGCAGATTGAGGGATA+AGG | - | chr7.2:51606743-51606762 | MS.gene023108:intron | 40.0% | |
| CATACTCTTTGTTGGAAAGG+TGG | - | chr7.2:51608162-51608181 | MS.gene023108:CDS | 40.0% | |
| CCTCGTAAAAAAGTGGAAGT+AGG | - | chr7.2:51607821-51607840 | MS.gene023108:CDS | 40.0% | |
| GAAACCCTAAACTCTAAGCA+TGG | + | chr7.2:51606098-51606117 | None:intergenic | 40.0% | |
| GATCCTCATTCCACATTAAG+GGG | - | chr7.2:51606402-51606421 | MS.gene023108:CDS | 40.0% | |
| GGATCCTCATTCCACATTAA+GGG | - | chr7.2:51606401-51606420 | MS.gene023108:CDS | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | + | chr7.2:51607926-51607945 | None:intergenic | 40.0% | |
| TAAACTCTAAGCATGGCACA+TGG | + | chr7.2:51606091-51606110 | None:intergenic | 40.0% | |
| TAAGCAGATTGAGGGATAAG+GGG | - | chr7.2:51606745-51606764 | MS.gene023108:intron | 40.0% | |
| TCAGCTACAAAGTCAATTGG+AGG | + | chr7.2:51608100-51608119 | None:intergenic | 40.0% | |
| TCTCAATGGCAAGTCAGTAA+AGG | - | chr7.2:51607604-51607623 | MS.gene023108:intron | 40.0% | |
| TGGATCCTCATTCCACATTA+AGG | - | chr7.2:51606400-51606419 | MS.gene023108:CDS | 40.0% | |
| TGGTCAGCTACAAAGTCAAT+TGG | + | chr7.2:51608103-51608122 | None:intergenic | 40.0% | |
| TGTGCCATGCTTAGAGTTTA+GGG | - | chr7.2:51606091-51606110 | MS.gene023108:CDS | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | + | chr7.2:51605981-51606000 | None:intergenic | 40.0% | |
| TTTCTCCAGTCTGAATCAAC+CGG | - | chr7.2:51605846-51605865 | MS.gene023108:CDS | 40.0% | |
| ! | ACACATGTTAGTTTCACCGT+GGG | - | chr7.2:51606941-51606960 | MS.gene023108:intron | 40.0% |
| ! | CAGTTCGTCAGTTCTTTTGA+TGG | - | chr7.2:51607653-51607672 | MS.gene023108:intron | 40.0% |
| !! | AGAAAAGGAGTACCTTGTTG+AGG | + | chr7.2:51606049-51606068 | None:intergenic | 40.0% |
| !! | GAAAGACCTCTGAAATATGC+CGG | + | chr7.2:51607990-51608009 | None:intergenic | 40.0% |
| !! | TTACTGACTTGCCATTGAGA+AGG | + | chr7.2:51607604-51607623 | None:intergenic | 40.0% |
| !!! | CCTACTTCCACTTTTTTACG+AGG | + | chr7.2:51607824-51607843 | None:intergenic | 40.0% |
| !!! | GAGAGCAGTTGTTTTTGAGT+GGG | + | chr7.2:51605825-51605844 | None:intergenic | 40.0% |
| AACTATGGACCGATATGACC+GGG | + | chr7.2:51606306-51606325 | None:intergenic | 45.0% | |
| AAGGTGGTCAATCCTCTTGA+TGG | - | chr7.2:51608178-51608197 | MS.gene023108:CDS | 45.0% | |
| AAGTGGAAGTAGGCAAGTTC+CGG | - | chr7.2:51607831-51607850 | MS.gene023108:CDS | 45.0% | |
| ACAAAGTCAATTGGAGGGAC+CGG | + | chr7.2:51608094-51608113 | None:intergenic | 45.0% | |
| AGGTGGTCAATCCTCTTGAT+GGG | - | chr7.2:51608179-51608198 | MS.gene023108:CDS | 45.0% | |
| CACGGTGAAACTAACATGTG+TGG | + | chr7.2:51606942-51606961 | None:intergenic | 45.0% | |
| CCATTGACGTAAGACAAGCA+AGG | + | chr7.2:51605936-51605955 | None:intergenic | 45.0% | |
| CCTTGCTTGTCTTACGTCAA+TGG | - | chr7.2:51605933-51605952 | MS.gene023108:CDS | 45.0% | |
| GACGAACTGATCATTCTTGC+TGG | + | chr7.2:51607642-51607661 | None:intergenic | 45.0% | |
| GGGAGGTTTGACAAAAATGG+TGG | - | chr7.2:51607934-51607953 | MS.gene023108:CDS | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | - | chr7.2:51605941-51605960 | MS.gene023108:CDS | 45.0% | |
| GTTAAGCTGTGAACTAAGCC+AGG | + | chr7.2:51607494-51607513 | None:intergenic | 45.0% | |
| TGGGCTGAAAAGGAGACAAA+AGG | - | chr7.2:51607446-51607465 | MS.gene023108:intron | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | - | chr7.2:51605940-51605959 | MS.gene023108:CDS | 45.0% | |
| TTCATGTTCGCCCCTTAATG+TGG | + | chr7.2:51606415-51606434 | None:intergenic | 45.0% | |
| ! | AGAAACAAGCTGAGAGCATG+AGG | + | chr7.2:51605883-51605902 | None:intergenic | 45.0% |
| ! | CACACATGTTAGTTTCACCG+TGG | - | chr7.2:51606940-51606959 | MS.gene023108:intron | 45.0% |
| ! | CTTGTTTCTTCTGTGCTCTC+CGG | - | chr7.2:51605894-51605913 | MS.gene023108:CDS | 45.0% |
| ! | GACAACCCTTCTTTTGCATC+TGG | + | chr7.2:51607749-51607768 | None:intergenic | 45.0% |
| ! | GCATGAGGATTTGAGATCAC+CGG | + | chr7.2:51605868-51605887 | None:intergenic | 45.0% |
| ! | GGTTGATTCAGACTGGAGAA+AGG | + | chr7.2:51605847-51605866 | None:intergenic | 45.0% |
| ! | TTGTTTCTTCTGTGCTCTCC+GGG | - | chr7.2:51605895-51605914 | MS.gene023108:CDS | 45.0% |
| !!! | CAACCTGCTGGTTTTTGTGT+TGG | + | chr7.2:51606895-51606914 | None:intergenic | 45.0% |
| !!! | GGAGAGCAGTTGTTTTTGAG+TGG | + | chr7.2:51605826-51605845 | None:intergenic | 45.0% |
| !!! | TTGTTTTTGAGTGGGACCCT+CGG | + | chr7.2:51605817-51605836 | None:intergenic | 45.0% |
| !! | AAAAGAAATTAAAATATAAA+AGG | + | chr7.2:51606810-51606829 | None:intergenic | 5.0% |
| AAGCTGTGAACTAAGCCAGG+TGG | + | chr7.2:51607491-51607510 | None:intergenic | 50.0% | |
| TCGCCCCTTAATGTGGAATG+AGG | + | chr7.2:51606408-51606427 | None:intergenic | 50.0% | |
| TGTTTCTTCTGTGCTCTCCG+GGG | - | chr7.2:51605896-51605915 | MS.gene023108:CDS | 50.0% | |
| ! | AGAAGGTACGAAAGCTGCAG+CGG | - | chr7.2:51608024-51608043 | MS.gene023108:CDS | 50.0% |
| ! | AGCACGGTGTTGAGCGATAA+TGG | + | chr7.2:51605774-51605793 | None:intergenic | 50.0% |
| ! | CACGGTGTTGAGCGATAATG+GGG | + | chr7.2:51605772-51605791 | None:intergenic | 50.0% |
| ! | GATCACCGGTTGATTCAGAC+TGG | + | chr7.2:51605854-51605873 | None:intergenic | 50.0% |
| ! | GCACGGTGTTGAGCGATAAT+GGG | + | chr7.2:51605773-51605792 | None:intergenic | 50.0% |
| AAAGCTGCAGCGGTGACTGT+TGG | - | chr7.2:51608034-51608053 | MS.gene023108:CDS | 55.0% | |
| AAGTCAATTGGAGGGACCGG+AGG | + | chr7.2:51608091-51608110 | None:intergenic | 55.0% | |
| AGTCAATTGGAGGGACCGGA+GGG | + | chr7.2:51608090-51608109 | None:intergenic | 55.0% | |
| GGCAGCGATCATACTGAGCA+CGG | + | chr7.2:51605790-51605809 | None:intergenic | 55.0% | |
| GTGACTGTTGGCATGGTAGG+CGG | - | chr7.2:51608046-51608065 | MS.gene023108:CDS | 55.0% | |
| GTGCTCAGTATGATCGCTGC+CGG | - | chr7.2:51605789-51605808 | MS.gene023108:CDS | 55.0% | |
| TGACTGTTGGCATGGTAGGC+GGG | - | chr7.2:51608047-51608066 | MS.gene023108:CDS | 55.0% | |
| GCGGTGACTGTTGGCATGGT+AGG | - | chr7.2:51608043-51608062 | MS.gene023108:CDS | 60.0% | |
| GTCAATTGGAGGGACCGGAG+GGG | + | chr7.2:51608089-51608108 | None:intergenic | 60.0% | |
| TCAATTGGAGGGACCGGAGG+GGG | + | chr7.2:51608088-51608107 | None:intergenic | 60.0% | |
| TGCAGCGGTGACTGTTGGCA+TGG | - | chr7.2:51608039-51608058 | MS.gene023108:CDS | 60.0% | |
| TGCTCCGTATAGACCCCCTC+CGG | - | chr7.2:51608072-51608091 | MS.gene023108:CDS | 60.0% | |
| GGGACCGGAGGGGGTCTATA+CGG | + | chr7.2:51608079-51608098 | None:intergenic | 65.0% | |
| TTGAGTGGGACCCTCGGAGC+CGG | + | chr7.2:51605811-51605830 | None:intergenic | 65.0% | |
| !! | ATGATCGCTGCCGGCTCCGA+GGG | - | chr7.2:51605798-51605817 | MS.gene023108:CDS | 65.0% |
| !! | TATGATCGCTGCCGGCTCCG+AGG | - | chr7.2:51605797-51605816 | MS.gene023108:CDS | 65.0% |
| AGGTCCACCAGTGCGAGCCC+CGG | + | chr7.2:51605916-51605935 | None:intergenic | 70.0% | |
| CTCTCCGGGGCTCGCACTGG+TGG | - | chr7.2:51605909-51605928 | MS.gene023108:CDS | 75.0% | |
| GTGCTCTCCGGGGCTCGCAC+TGG | - | chr7.2:51605906-51605925 | MS.gene023108:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 51605657 | 51608204 | 51605657 | ID=MS.gene023108 |
| chr7.2 | mRNA | 51605657 | 51608204 | 51605657 | ID=MS.gene023108.t1;Parent=MS.gene023108 |
| chr7.2 | exon | 51607806 | 51608204 | 51607806 | ID=MS.gene023108.t1.exon1;Parent=MS.gene023108.t1 |
| chr7.2 | CDS | 51607806 | 51608204 | 51607806 | ID=cds.MS.gene023108.t1;Parent=MS.gene023108.t1 |
| chr7.2 | exon | 51605657 | 51606445 | 51605657 | ID=MS.gene023108.t1.exon2;Parent=MS.gene023108.t1 |
| chr7.2 | CDS | 51605657 | 51606445 | 51605657 | ID=cds.MS.gene023108.t1;Parent=MS.gene023108.t1 |
| Gene Sequence |
| Protein sequence |
