Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023116.t1 | XP_013448489.1 | 88.4 | 397 | 45 | 1 | 1 | 396 | 6 | 402 | 5.60E-192 | 680.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023116.t1 | Q9S7T8 | 50.6 | 391 | 187 | 5 | 7 | 394 | 3 | 390 | 5.4e-103 | 375.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023116.t1 | Q2HSM8 | 88.4 | 397 | 45 | 1 | 1 | 396 | 6 | 402 | 4.0e-192 | 680.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene023116 | MS.gene045585 | PPI |
MS.gene006610 | MS.gene023116 | PPI |
MS.gene065945 | MS.gene023116 | PPI |
MS.gene031697 | MS.gene023116 | PPI |
MS.gene023116 | MS.gene065944 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023116.t1 | MTR_7g451890 | 89.169 | 397 | 42 | 1 | 1 | 396 | 6 | 402 | 0.0 | 689 |
MS.gene023116.t1 | MTR_7g047780 | 87.909 | 397 | 47 | 1 | 1 | 396 | 6 | 402 | 0.0 | 674 |
MS.gene023116.t1 | MTR_7g050750 | 85.101 | 396 | 58 | 1 | 2 | 396 | 1 | 396 | 0.0 | 658 |
MS.gene023116.t1 | MTR_7g050810 | 82.995 | 394 | 66 | 1 | 4 | 396 | 11 | 404 | 0.0 | 636 |
MS.gene023116.t1 | MTR_3g101180 | 64.232 | 397 | 135 | 3 | 5 | 394 | 2 | 398 | 1.41e-173 | 490 |
MS.gene023116.t1 | MTR_8g461160 | 66.496 | 391 | 124 | 4 | 9 | 395 | 6 | 393 | 4.44e-173 | 488 |
MS.gene023116.t1 | MTR_7g050830 | 78.438 | 320 | 37 | 3 | 4 | 302 | 11 | 319 | 1.59e-172 | 484 |
MS.gene023116.t1 | MTR_3g101010 | 62.982 | 389 | 139 | 3 | 9 | 396 | 5 | 389 | 1.22e-166 | 472 |
MS.gene023116.t1 | MTR_4g045707 | 61.697 | 389 | 142 | 4 | 9 | 396 | 6 | 388 | 3.55e-163 | 463 |
MS.gene023116.t1 | MTR_3g018740 | 62.148 | 391 | 140 | 5 | 7 | 395 | 3 | 387 | 7.00e-163 | 462 |
MS.gene023116.t1 | MTR_3g101130 | 61.381 | 391 | 141 | 4 | 9 | 396 | 6 | 389 | 1.48e-161 | 459 |
MS.gene023116.t1 | MTR_8g027395 | 59.335 | 391 | 150 | 3 | 7 | 396 | 15 | 397 | 4.50e-159 | 453 |
MS.gene023116.t1 | MTR_3g101030 | 57.606 | 401 | 145 | 5 | 15 | 396 | 35 | 429 | 4.04e-152 | 437 |
MS.gene023116.t1 | MTR_3g048000 | 57.623 | 387 | 138 | 5 | 10 | 394 | 28 | 390 | 1.04e-149 | 429 |
MS.gene023116.t1 | MTR_4g088525 | 59.945 | 362 | 138 | 2 | 34 | 394 | 12 | 367 | 1.04e-146 | 421 |
MS.gene023116.t1 | MTR_8g027420 | 56.266 | 391 | 151 | 4 | 7 | 396 | 4 | 375 | 1.27e-146 | 421 |
MS.gene023116.t1 | MTR_2g046030 | 55.980 | 393 | 161 | 4 | 7 | 395 | 3 | 387 | 2.76e-145 | 418 |
MS.gene023116.t1 | MTR_2g045980 | 55.216 | 393 | 164 | 4 | 7 | 395 | 3 | 387 | 7.20e-143 | 412 |
MS.gene023116.t1 | MTR_3g101050 | 57.326 | 389 | 134 | 6 | 13 | 394 | 33 | 396 | 3.34e-139 | 403 |
MS.gene023116.t1 | MTR_3g101200 | 56.234 | 393 | 144 | 6 | 3 | 394 | 25 | 390 | 6.58e-138 | 399 |
MS.gene023116.t1 | MTR_3g015620 | 53.283 | 396 | 150 | 7 | 6 | 395 | 13 | 379 | 1.43e-132 | 385 |
MS.gene023116.t1 | MTR_4g088535 | 54.688 | 384 | 149 | 4 | 9 | 391 | 7 | 366 | 1.79e-132 | 385 |
MS.gene023116.t1 | MTR_3g102920 | 53.886 | 386 | 135 | 7 | 13 | 394 | 62 | 408 | 5.10e-127 | 372 |
MS.gene023116.t1 | MTR_3g101190 | 51.604 | 374 | 115 | 3 | 24 | 396 | 4 | 312 | 2.18e-123 | 359 |
MS.gene023116.t1 | MTR_3g100995 | 61.390 | 259 | 89 | 3 | 141 | 396 | 14 | 264 | 1.89e-110 | 325 |
MS.gene023116.t1 | MTR_3g018747 | 60.076 | 263 | 87 | 3 | 134 | 395 | 9 | 254 | 1.31e-102 | 304 |
MS.gene023116.t1 | MTR_3g015760 | 58.935 | 263 | 102 | 3 | 134 | 395 | 23 | 280 | 7.84e-96 | 288 |
MS.gene023116.t1 | MTR_3g100010 | 48.571 | 315 | 113 | 4 | 31 | 311 | 37 | 336 | 6.87e-92 | 280 |
MS.gene023116.t1 | MTR_3g111160 | 59.821 | 224 | 84 | 3 | 175 | 396 | 1 | 220 | 4.49e-81 | 248 |
MS.gene023116.t1 | MTR_3g114310 | 40.369 | 379 | 203 | 10 | 34 | 396 | 39 | 410 | 4.13e-80 | 252 |
MS.gene023116.t1 | MTR_3g100520 | 58.482 | 224 | 76 | 4 | 175 | 396 | 1 | 209 | 7.63e-80 | 244 |
MS.gene023116.t1 | MTR_3g101110 | 56.540 | 237 | 73 | 4 | 137 | 370 | 71 | 280 | 2.85e-75 | 235 |
MS.gene023116.t1 | MTR_2g046410 | 57.277 | 213 | 83 | 2 | 187 | 395 | 140 | 348 | 1.38e-74 | 236 |
MS.gene023116.t1 | MTR_3g099970 | 59.694 | 196 | 62 | 2 | 134 | 329 | 20 | 198 | 2.73e-73 | 227 |
MS.gene023116.t1 | MTR_3g101150 | 64.557 | 158 | 52 | 2 | 240 | 394 | 1 | 157 | 1.02e-65 | 206 |
MS.gene023116.t1 | MTR_3g101020 | 51.042 | 192 | 59 | 3 | 208 | 396 | 1 | 160 | 1.99e-56 | 182 |
MS.gene023116.t1 | MTR_3g102870 | 53.939 | 165 | 76 | 0 | 197 | 361 | 1 | 165 | 6.99e-54 | 176 |
MS.gene023116.t1 | MTR_3g111150 | 48.571 | 175 | 65 | 3 | 12 | 186 | 2 | 151 | 2.46e-48 | 162 |
MS.gene023116.t1 | MTR_3g100990 | 55.906 | 127 | 53 | 2 | 9 | 134 | 5 | 129 | 2.55e-33 | 130 |
MS.gene023116.t1 | MTR_3g101140 | 49.515 | 103 | 51 | 1 | 294 | 396 | 15 | 116 | 3.50e-21 | 88.6 |
MS.gene023116.t1 | MTR_4g093550 | 47.126 | 87 | 44 | 1 | 7 | 93 | 4 | 88 | 1.55e-14 | 69.3 |
MS.gene023116.t1 | MTR_6g046890 | 58.929 | 56 | 23 | 0 | 34 | 89 | 22 | 77 | 5.11e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene023116.t1 | AT1G47710 | 51.706 | 381 | 178 | 5 | 17 | 394 | 13 | 390 | 3.24e-131 | 382 |
MS.gene023116.t1 | AT1G47710 | 51.706 | 381 | 178 | 5 | 17 | 394 | 40 | 417 | 2.84e-130 | 381 |
MS.gene023116.t1 | AT2G26390 | 45.685 | 394 | 197 | 6 | 7 | 393 | 3 | 386 | 1.19e-116 | 345 |
MS.gene023116.t1 | AT2G25240 | 47.059 | 391 | 192 | 7 | 7 | 393 | 3 | 382 | 4.31e-115 | 341 |
MS.gene023116.t1 | AT3G45220 | 44.584 | 397 | 201 | 7 | 7 | 393 | 3 | 390 | 4.09e-113 | 336 |
MS.gene023116.t1 | AT1G62170 | 44.304 | 395 | 185 | 7 | 7 | 393 | 64 | 431 | 1.74e-104 | 315 |
MS.gene023116.t1 | AT1G64030 | 44.020 | 393 | 190 | 8 | 7 | 393 | 3 | 371 | 3.19e-99 | 300 |
MS.gene023116.t1 | AT1G62170 | 40.888 | 428 | 185 | 8 | 7 | 393 | 64 | 464 | 2.94e-97 | 298 |
MS.gene023116.t1 | AT2G14540 | 46.721 | 366 | 168 | 6 | 32 | 393 | 55 | 397 | 8.31e-97 | 295 |
MS.gene023116.t1 | AT2G35580 | 41.769 | 407 | 187 | 13 | 1 | 393 | 1 | 371 | 3.01e-92 | 282 |
MS.gene023116.t1 | AT1G64010 | 45.000 | 220 | 95 | 4 | 175 | 393 | 1 | 195 | 7.62e-60 | 193 |
MS.gene023116.t1 | AT1G64010 | 44.878 | 205 | 87 | 4 | 190 | 393 | 2 | 181 | 3.08e-53 | 175 |
MS.gene023116.t1 | AT1G63280 | 57.627 | 118 | 46 | 2 | 131 | 246 | 5 | 120 | 1.44e-36 | 129 |
MS.gene023116.t1 | AT1G62160 | 38.462 | 182 | 85 | 3 | 214 | 393 | 62 | 218 | 2.41e-33 | 124 |
MS.gene023116.t1 | AT1G51330 | 50.893 | 112 | 52 | 3 | 132 | 240 | 29 | 140 | 4.42e-24 | 99.0 |
MS.gene023116.t1 | AT1G64020 | 34.862 | 109 | 69 | 2 | 17 | 124 | 13 | 120 | 7.40e-12 | 62.4 |
Find 89 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAGAGAAGAAGTGAATTTA+TGG | 0.183576 | 7.2:-51733692 | MS.gene023116:CDS |
TCTGAGTTGCTAAAGAAATT+AGG | 0.188756 | 7.2:-51733228 | MS.gene023116:CDS |
AGTCAAGAACTTTATGTTTC+CGG | 0.215284 | 7.2:-51733150 | MS.gene023116:CDS |
CCATCTTTGCCTTGTTTATA+AGG | 0.244454 | 7.2:+51733423 | None:intergenic |
ACATAAAGTTCTTGACTTAT+AGG | 0.247103 | 7.2:+51733156 | None:intergenic |
GTCAAACCTCCCATAGAAAA+AGG | 0.264352 | 7.2:+51733195 | None:intergenic |
ATCATTCTTGCTGGTCATAA+AGG | 0.273820 | 7.2:+51733488 | None:intergenic |
AACCTTTCCAACAAAGAGTA+TGG | 0.349311 | 7.2:+51732957 | None:intergenic |
CTTGTTTCTTCTGTGCTCTC+CGG | 0.354447 | 7.2:-51735392 | MS.gene023116:CDS |
AAGTCAAAGTAGGCAAGTTC+AGG | 0.369646 | 7.2:-51733287 | MS.gene023116:CDS |
CCTTGCTTGTCTTACGTCAA+TGG | 0.370001 | 7.2:-51735353 | MS.gene023116:CDS |
TCTGATGGTTTCAAAGTCCT+TGG | 0.370663 | 7.2:-51733450 | MS.gene023116:CDS |
TTGTTTCTTCTGTGCTCTCC+GGG | 0.376107 | 7.2:-51735391 | MS.gene023116:CDS |
GCTTGGCATGCACGCGTTCT+CGG | 0.387428 | 7.2:-51733062 | MS.gene023116:CDS |
CTGATCAGAGAAGAGTTTAG+TGG | 0.389922 | 7.2:-51732982 | MS.gene023116:CDS |
AGAAACAAGGTGAGAGCATA+AGG | 0.391341 | 7.2:+51735406 | None:intergenic |
TTGATTGGATAACAAGTGTT+TGG | 0.423243 | 7.2:+51735568 | None:intergenic |
TCATTCTTGCTGGTCATAAA+GGG | 0.426111 | 7.2:+51733489 | None:intergenic |
TCAAAGGAAATATTGAATCT+TGG | 0.427509 | 7.2:+51733261 | None:intergenic |
GATAAACTGATCATTCTTGC+TGG | 0.430849 | 7.2:+51733479 | None:intergenic |
TTTGATTGATAAAGTAGCTT+CGG | 0.430887 | 7.2:-51733346 | MS.gene023116:CDS |
AGTAGTCATAAGTTGTTTGA+AGG | 0.434567 | 7.2:+51735295 | None:intergenic |
AGCACGGTGTTGAGCGATAA+TGG | 0.435236 | 7.2:+51735515 | None:intergenic |
GTCATAAGTTGTTTGAAGGA+AGG | 0.435473 | 7.2:+51735299 | None:intergenic |
CAAGTGTTTGGTGATGTTCA+TGG | 0.446905 | 7.2:+51735580 | None:intergenic |
GTCTTACGTCAATGGTGTGT+GGG | 0.450358 | 7.2:-51735345 | MS.gene023116:CDS |
AGTGGAACCATACTCTTTGT+TGG | 0.451399 | 7.2:-51732964 | MS.gene023116:CDS |
AAGGTTGTCAATCCTCTTGA+TGG | 0.463069 | 7.2:-51732940 | MS.gene023116:CDS |
CTCTCCGGGGCTCGCACTAG+TGG | 0.464699 | 7.2:-51735377 | MS.gene023116:CDS |
TGGGCCGAAAAGAAGACAAA+AGG | 0.471958 | 7.2:-51733672 | MS.gene023116:CDS |
TGCAGCAGTGACCGTTAGCT+TGG | 0.472957 | 7.2:-51733079 | MS.gene023116:CDS |
GTTGCTAAAGAAATTAGGAT+TGG | 0.473453 | 7.2:-51733223 | MS.gene023116:CDS |
GAGAGAAGAAGTGAATTTAT+GGG | 0.474520 | 7.2:-51733691 | MS.gene023116:CDS |
CAGTTTATCAGTTCTTCTGA+TGG | 0.475716 | 7.2:-51733465 | MS.gene023116:CDS |
CCTTATAAACAAGGCAAAGA+TGG | 0.475837 | 7.2:-51733423 | MS.gene023116:CDS |
TGTTCATGGAAACGTTGGTT+AGG | 0.481229 | 7.2:+51735594 | None:intergenic |
TTCATTGAAGTAAACGAAGA+AGG | 0.482300 | 7.2:-51733111 | MS.gene023116:CDS |
AAGAAGAAGAATGGTGATGC+AGG | 0.487345 | 7.2:-51735642 | None:intergenic |
AACCATACTCTTTGTTGGAA+AGG | 0.488595 | 7.2:-51732959 | MS.gene023116:CDS |
TTTCTCCAGTCTGAATCCAC+TGG | 0.508452 | 7.2:-51735440 | MS.gene023116:CDS |
GCATGCACGCGTTCTCGGTA+CGG | 0.512534 | 7.2:-51733057 | MS.gene023116:CDS |
TTCAAGATCTTCTTCCATGC+GGG | 0.517087 | 7.2:-51733644 | MS.gene023116:CDS |
GCAAATGCACTATACTTCAA+AGG | 0.528381 | 7.2:-51733591 | MS.gene023116:CDS |
AGTCGATTGGAGGGAGCAGA+GGG | 0.528422 | 7.2:+51733031 | None:intergenic |
CTTGGTCTTCCTTATAAACA+AGG | 0.530839 | 7.2:-51733432 | MS.gene023116:CDS |
GTGCTCAGTATGATCGCTAC+CGG | 0.530879 | 7.2:-51735497 | MS.gene023116:CDS |
CTCAGAAGCTTCAATCTCAA+AGG | 0.535018 | 7.2:+51733245 | None:intergenic |
GAAAGACTTCTGAAATATGC+CGG | 0.537794 | 7.2:+51733131 | None:intergenic |
AGTGGATTCAGACTGGAGAA+AGG | 0.552727 | 7.2:+51735442 | None:intergenic |
TCTCAATGGCAAGTCAGTAA+AGG | 0.555621 | 7.2:-51733514 | MS.gene023116:CDS |
CACTATACTTCAAAGGAGTG+TGG | 0.556458 | 7.2:-51733584 | MS.gene023116:CDS |
GGGCCGAAAAGAAGACAAAA+GGG | 0.559915 | 7.2:-51733671 | MS.gene023116:CDS |
GTTTGATACTTTCAAAACAA+AGG | 0.564167 | 7.2:-51733553 | MS.gene023116:CDS |
AGGGCCACTAGTGCGAGCCC+CGG | 0.567746 | 7.2:+51735373 | None:intergenic |
TTGAGTGGGACCCTCGGACC+CGG | 0.572311 | 7.2:+51735478 | None:intergenic |
CCTCGTGAAGAAGTCAAAGT+AGG | 0.574480 | 7.2:-51733297 | MS.gene023116:CDS |
TGTTTGAAGGAAGGTTGAAG+AGG | 0.574991 | 7.2:+51735308 | None:intergenic |
TGCAGTTGATTTCGTCAACA+AGG | 0.577204 | 7.2:-51735252 | MS.gene023116:intron |
CGGAGAGCACAGAAGAAACA+AGG | 0.577896 | 7.2:+51735393 | None:intergenic |
TATGATCGCTACCGGGTCCG+AGG | 0.579880 | 7.2:-51735489 | MS.gene023116:CDS |
TGTCTTACGTCAATGGTGTG+TGG | 0.580488 | 7.2:-51735346 | MS.gene023116:CDS |
TTACTGACTTGCCATTGAGA+AGG | 0.583004 | 7.2:+51733517 | None:intergenic |
TGGTCGGCTACAAAGTCGAT+TGG | 0.583969 | 7.2:+51733018 | None:intergenic |
ACTATACTTCAAAGGAGTGT+GGG | 0.588475 | 7.2:-51733583 | MS.gene023116:CDS |
GATCACCAGTGGATTCAGAC+TGG | 0.590752 | 7.2:+51735435 | None:intergenic |
AGGTTGTCAATCCTCTTGAT+GGG | 0.591371 | 7.2:-51732939 | MS.gene023116:CDS |
TCGGCTACAAAGTCGATTGG+AGG | 0.593325 | 7.2:+51733021 | None:intergenic |
TTATCCAATCAAAATCTCAA+AGG | 0.595741 | 7.2:-51735557 | MS.gene023116:CDS |
ATTCAAGATCTTCTTCCATG+CGG | 0.601926 | 7.2:-51733645 | MS.gene023116:CDS |
AAATGTAAATAGAGAACGCA+CGG | 0.605169 | 7.2:+51733400 | None:intergenic |
TTCAACAATCACCCATCAAG+AGG | 0.605491 | 7.2:+51732928 | None:intergenic |
AAGTCGATTGGAGGGAGCAG+AGG | 0.607935 | 7.2:+51733030 | None:intergenic |
CGGCTACAAAGTCGATTGGA+GGG | 0.609881 | 7.2:+51733022 | None:intergenic |
ACGCGTGCATGCCAAGCTAA+CGG | 0.612153 | 7.2:+51733068 | None:intergenic |
ATGATCGCTACCGGGTCCGA+GGG | 0.612325 | 7.2:-51735488 | MS.gene023116:CDS |
CTTGTTTATAAGGAAGACCA+AGG | 0.612910 | 7.2:+51733433 | None:intergenic |
TGCTCAGTATGATCGCTACC+GGG | 0.616181 | 7.2:-51735496 | MS.gene023116:CDS |
CATTGACGTAAGACAAGCAA+GGG | 0.620054 | 7.2:+51735354 | None:intergenic |
TAAGGATTTGAGATCACCAG+TGG | 0.620599 | 7.2:+51735424 | None:intergenic |
GGTGATGTTCATGGAAACGT+TGG | 0.634641 | 7.2:+51735589 | None:intergenic |
TGTTTCTTCTGTGCTCTCCG+GGG | 0.635190 | 7.2:-51735390 | MS.gene023116:CDS |
CATTCTTGCTGGTCATAAAG+GGG | 0.644450 | 7.2:+51733490 | None:intergenic |
ATGGTGATGCAGGATCTCAT+CGG | 0.678758 | 7.2:-51735632 | MS.gene023116:CDS |
AAGCTGTGAACTGACCCGCA+TGG | 0.684890 | 7.2:+51733630 | None:intergenic |
GGTCAGTTCACAGCTTAACG+AGG | 0.693418 | 7.2:-51733623 | MS.gene023116:CDS |
CCTACTTTGACTTCTTCACG+AGG | 0.700753 | 7.2:+51733297 | None:intergenic |
CCATTGACGTAAGACAAGCA+AGG | 0.702901 | 7.2:+51735353 | None:intergenic |
GGTAGCGATCATACTGAGCA+CGG | 0.705369 | 7.2:+51735499 | None:intergenic |
GTCGATTGGAGGGAGCAGAG+GGG | 0.752667 | 7.2:+51733032 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTTTATTTTTTTAGTAG+AGG | - | chr7.2:51733392-51733411 | MS.gene023116:CDS | 10.0% |
!!! | AAAACTTAAATTTTTCTGTT+TGG | + | chr7.2:51734207-51734226 | None:intergenic | 15.0% |
!!! | TCAAATGATTTATTTTAACA+TGG | - | chr7.2:51734814-51734833 | MS.gene023116:intron | 15.0% |
!! | AAAAATCAATAATGTGACTT+TGG | - | chr7.2:51734408-51734427 | MS.gene023116:intron | 20.0% |
!! | AAAATATGACAAGGATAATT+AGG | - | chr7.2:51734549-51734568 | MS.gene023116:intron | 20.0% |
!! | AAATATGACAAGGATAATTA+GGG | - | chr7.2:51734550-51734569 | MS.gene023116:intron | 20.0% |
!! | GAAACAAAGTTATATGTAAA+AGG | + | chr7.2:51734185-51734204 | None:intergenic | 20.0% |
!! | GCTCATTCTATTAAAATAAT+AGG | - | chr7.2:51733661-51733680 | MS.gene023116:CDS | 20.0% |
!!! | ATTGGTAACAGTTTATTTTA+GGG | + | chr7.2:51734006-51734025 | None:intergenic | 20.0% |
!!! | CAATCTTTTGAGAAATAAAT+TGG | + | chr7.2:51733908-51733927 | None:intergenic | 20.0% |
!!! | TATTGGTAACAGTTTATTTT+AGG | + | chr7.2:51734007-51734026 | None:intergenic | 20.0% |
! | AAAAGGATTGATCTAGAAAT+TGG | + | chr7.2:51734168-51734187 | None:intergenic | 25.0% |
! | ACATAAAGTTCTTGACTTAT+AGG | + | chr7.2:51735415-51735434 | None:intergenic | 25.0% |
! | ACTGTCTATAAAATATGACA+AGG | - | chr7.2:51734540-51734559 | MS.gene023116:intron | 25.0% |
! | ACTTGTATGTAATTGTACTA+TGG | + | chr7.2:51734076-51734095 | None:intergenic | 25.0% |
! | ATTGATCTAGAAATTGGTAA+GGG | + | chr7.2:51734162-51734181 | None:intergenic | 25.0% |
! | CTTGTATGTAATTGTACTAT+GGG | + | chr7.2:51734075-51734094 | None:intergenic | 25.0% |
! | GAATGAGCATATTGATATTT+AGG | + | chr7.2:51733804-51733823 | None:intergenic | 25.0% |
! | GATTGGATTGTAATGTTAAT+AGG | + | chr7.2:51734131-51734150 | None:intergenic | 25.0% |
! | GTTTGATACTTTCAAAACAA+AGG | - | chr7.2:51735015-51735034 | MS.gene023116:intron | 25.0% |
! | TAAACTGTTACCAATAATGT+CGG | - | chr7.2:51734011-51734030 | MS.gene023116:intron | 25.0% |
! | TATCTTAATATGTGTCCTAA+GGG | + | chr7.2:51733857-51733876 | None:intergenic | 25.0% |
! | TCAAAGGAAATATTGAATCT+TGG | + | chr7.2:51735310-51735329 | None:intergenic | 25.0% |
! | TTATCCAATCAAAATCTCAA+AGG | - | chr7.2:51733011-51733030 | MS.gene023116:CDS | 25.0% |
! | TTTGATTGATAAAGTAGCTT+CGG | - | chr7.2:51735222-51735241 | MS.gene023116:intron | 25.0% |
!!! | ACAAGTTTGTTTTTCACAAT+TGG | + | chr7.2:51734352-51734371 | None:intergenic | 25.0% |
!!! | TACAATTGATACTGATTTGA+AGG | - | chr7.2:51734844-51734863 | MS.gene023116:intron | 25.0% |
!!! | TTATTTGTTGTCACAAGTTA+GGG | - | chr7.2:51733350-51733369 | MS.gene023116:CDS | 25.0% |
!!! | TTTATTTGTTGTCACAAGTT+AGG | - | chr7.2:51733349-51733368 | MS.gene023116:CDS | 25.0% |
AAATGTAAATAGAGAACGCA+CGG | + | chr7.2:51735171-51735190 | None:intergenic | 30.0% | |
AATAAACCTATCCAGCTAAT+TGG | + | chr7.2:51734680-51734699 | None:intergenic | 30.0% | |
ACATATTGAGCATATTGAAC+AGG | + | chr7.2:51733695-51733714 | None:intergenic | 30.0% | |
ACTCGTTAGATTTAACATGA+TGG | + | chr7.2:51733634-51733653 | None:intergenic | 30.0% | |
ACTTGTGTATATATAGTGCA+AGG | - | chr7.2:51734366-51734385 | MS.gene023116:intron | 30.0% | |
AGGTTAAATGTCTCAGAAAA+TGG | + | chr7.2:51734592-51734611 | None:intergenic | 30.0% | |
AGTAGTCATAAGTTGTTTGA+AGG | + | chr7.2:51733276-51733295 | None:intergenic | 30.0% | |
AGTCAAGAACTTTATGTTTC+CGG | - | chr7.2:51735418-51735437 | MS.gene023116:CDS | 30.0% | |
AGTCCATTATTGTGCTTTAA+AGG | + | chr7.2:51734102-51734121 | None:intergenic | 30.0% | |
ATAGTACTAACCGACATTAT+TGG | + | chr7.2:51734024-51734043 | None:intergenic | 30.0% | |
CTCTGATCAGAAACAAAAAA+GGG | + | chr7.2:51735576-51735595 | None:intergenic | 30.0% | |
GAGAGAAGAAGTGAATTTAT+GGG | - | chr7.2:51734877-51734896 | MS.gene023116:intron | 30.0% | |
GATTGATCTAGAAATTGGTA+AGG | + | chr7.2:51734163-51734182 | None:intergenic | 30.0% | |
GGATCAATAATATCTCACTT+AGG | + | chr7.2:51734331-51734350 | None:intergenic | 30.0% | |
GTATCTTAATATGTGTCCTA+AGG | + | chr7.2:51733858-51733877 | None:intergenic | 30.0% | |
GTTCAATATGCTCAATATGT+AGG | - | chr7.2:51733695-51733714 | MS.gene023116:CDS | 30.0% | |
GTTGCTAAAGAAATTAGGAT+TGG | - | chr7.2:51735345-51735364 | MS.gene023116:CDS | 30.0% | |
TATGAAAGACAGCACAAAAA+CGG | + | chr7.2:51733491-51733510 | None:intergenic | 30.0% | |
TCAACACAAAGTTTGTAAGT+CGG | + | chr7.2:51733732-51733751 | None:intergenic | 30.0% | |
TCTCTGATCAGAAACAAAAA+AGG | + | chr7.2:51735577-51735596 | None:intergenic | 30.0% | |
TCTGAGTTGCTAAAGAAATT+AGG | - | chr7.2:51735340-51735359 | MS.gene023116:CDS | 30.0% | |
TTCATTGAAGTAAACGAAGA+AGG | - | chr7.2:51735457-51735476 | MS.gene023116:CDS | 30.0% | |
TTCTCAGTTGCTTGATTAAT+TGG | - | chr7.2:51733767-51733786 | MS.gene023116:intron | 30.0% | |
TTGATTGGATAACAAGTGTT+TGG | + | chr7.2:51733003-51733022 | None:intergenic | 30.0% | |
TTGTATTCAAAATGAGTCCA+AGG | + | chr7.2:51734612-51734631 | None:intergenic | 30.0% | |
! | AAACCTTAACATGTGCTATT+AGG | - | chr7.2:51733964-51733983 | MS.gene023116:intron | 30.0% |
! | AACCTTAACATGTGCTATTA+GGG | - | chr7.2:51733965-51733984 | MS.gene023116:intron | 30.0% |
! | ATTTTTGAACAGACCATGAT+AGG | - | chr7.2:51733603-51733622 | MS.gene023116:CDS | 30.0% |
!! | TATGATTTTGACCTTCTCAA+TGG | - | chr7.2:51735040-51735059 | MS.gene023116:intron | 30.0% |
!!! | ATTGGCTTTACCTTTTTCTA+TGG | - | chr7.2:51735363-51735382 | MS.gene023116:CDS | 30.0% |
!!! | CATAAGTTAGTTTTCAGTGT+TGG | - | chr7.2:51734296-51734315 | MS.gene023116:intron | 30.0% |
!!! | CTTTCCTTTGAGATTTTGAT+TGG | + | chr7.2:51733018-51733037 | None:intergenic | 30.0% |
!!! | TTGGCTTTACCTTTTTCTAT+GGG | - | chr7.2:51735364-51735383 | MS.gene023116:CDS | 30.0% |
!!! | TTTTCTGAGACATTTAACCT+TGG | - | chr7.2:51734592-51734611 | MS.gene023116:intron | 30.0% |
AACCATACTCTTTGTTGGAA+AGG | - | chr7.2:51735609-51735628 | MS.gene023116:CDS | 35.0% | |
AACCTTTCCAACAAAGAGTA+TGG | + | chr7.2:51735614-51735633 | None:intergenic | 35.0% | |
ATCATTCTTGCTGGTCATAA+AGG | + | chr7.2:51735083-51735102 | None:intergenic | 35.0% | |
ATTCAAGATCTTCTTCCATG+CGG | - | chr7.2:51734923-51734942 | MS.gene023116:intron | 35.0% | |
CAGTTTATCAGTTCTTCTGA+TGG | - | chr7.2:51735103-51735122 | MS.gene023116:intron | 35.0% | |
CCATATACCAAAAAGAATGC+AGG | - | chr7.2:51734233-51734252 | MS.gene023116:intron | 35.0% | |
CCTTATAAACAAGGCAAAGA+TGG | - | chr7.2:51735145-51735164 | MS.gene023116:intron | 35.0% | |
CGAGAGAAGAAGTGAATTTA+TGG | - | chr7.2:51734876-51734895 | MS.gene023116:intron | 35.0% | |
CTATGGGTTTAAGCTCAATA+TGG | + | chr7.2:51734059-51734078 | None:intergenic | 35.0% | |
CTTGTTTATAAGGAAGACCA+AGG | + | chr7.2:51735138-51735157 | None:intergenic | 35.0% | |
GATAAACTGATCATTCTTGC+TGG | + | chr7.2:51735092-51735111 | None:intergenic | 35.0% | |
GCAAATGCACTATACTTCAA+AGG | - | chr7.2:51734977-51734996 | MS.gene023116:intron | 35.0% | |
GGATAATTAGGGCATGTAAT+TGG | - | chr7.2:51734561-51734580 | MS.gene023116:intron | 35.0% | |
GTCATAAGTTGTTTGAAGGA+AGG | + | chr7.2:51733272-51733291 | None:intergenic | 35.0% | |
TAATCAAGCAACTGAGAAAG+AGG | + | chr7.2:51733765-51733784 | None:intergenic | 35.0% | |
TATGGGAGGTTTGACAAAAA+TGG | - | chr7.2:51735381-51735400 | MS.gene023116:CDS | 35.0% | |
TATTAGGGCACAAGTTAACA+TGG | - | chr7.2:51733980-51733999 | MS.gene023116:intron | 35.0% | |
TCATTCTTGCTGGTCATAAA+GGG | + | chr7.2:51735082-51735101 | None:intergenic | 35.0% | |
TGATCAGAAACAAAAAAGGG+TGG | + | chr7.2:51735573-51735592 | None:intergenic | 35.0% | |
TTCTTCCTGACGAAAAAGAT+GGG | - | chr7.2:51735191-51735210 | MS.gene023116:intron | 35.0% | |
TTTCTTCCTGACGAAAAAGA+TGG | - | chr7.2:51735190-51735209 | MS.gene023116:intron | 35.0% | |
! | AAGCCCTTTTGTCTTCTTTT+CGG | + | chr7.2:51734903-51734922 | None:intergenic | 35.0% |
! | ACTATACTTCAAAGGAGTGT+GGG | - | chr7.2:51734985-51735004 | MS.gene023116:intron | 35.0% |
! | CTTGGTCTTCCTTATAAACA+AGG | - | chr7.2:51735136-51735155 | MS.gene023116:intron | 35.0% |
! | GCAAAATGAAAGCATGGAAA+GGG | + | chr7.2:51734270-51734289 | None:intergenic | 35.0% |
! | GTTTTTGTGCTGTCTTTCAT+AGG | - | chr7.2:51733490-51733509 | MS.gene023116:CDS | 35.0% |
!! | CCATCTTTGCCTTGTTTATA+AGG | + | chr7.2:51735148-51735167 | None:intergenic | 35.0% |
!! | CCTGCATTCTTTTTGGTATA+TGG | + | chr7.2:51734236-51734255 | None:intergenic | 35.0% |
!! | GAAAGACTTCTGAAATATGC+CGG | + | chr7.2:51735440-51735459 | None:intergenic | 35.0% |
!! | GTGCCTTTAAAGCACAATAA+TGG | - | chr7.2:51734096-51734115 | MS.gene023116:intron | 35.0% |
!!! | GAGAGAAGTTGTTTTTGAGT+GGG | + | chr7.2:51733107-51733126 | None:intergenic | 35.0% |
AAGGTTGTCAATCCTCTTGA+TGG | - | chr7.2:51735628-51735647 | MS.gene023116:CDS | 40.0% | |
AAGTCAAAGTAGGCAAGTTC+AGG | - | chr7.2:51735281-51735300 | MS.gene023116:CDS | 40.0% | |
ACACAACTTAAGTGTTAGCG+TGG | - | chr7.2:51733433-51733452 | MS.gene023116:CDS | 40.0% | |
AGGTTGTCAATCCTCTTGAT+GGG | - | chr7.2:51735629-51735648 | MS.gene023116:CDS | 40.0% | |
AGTGGAACCATACTCTTTGT+TGG | - | chr7.2:51735604-51735623 | MS.gene023116:CDS | 40.0% | |
CACTATACTTCAAAGGAGTG+TGG | - | chr7.2:51734984-51735003 | MS.gene023116:intron | 40.0% | |
CAGAAACAAAAAAGGGTGGT+CGG | + | chr7.2:51735569-51735588 | None:intergenic | 40.0% | |
CAGCTAATTGGCAAGACATT+AGG | + | chr7.2:51734668-51734687 | None:intergenic | 40.0% | |
CATTCTTGCTGGTCATAAAG+GGG | + | chr7.2:51735081-51735100 | None:intergenic | 40.0% | |
CATTGACGTAAGACAAGCAA+GGG | + | chr7.2:51733217-51733236 | None:intergenic | 40.0% | |
CTAATGTCTTGCCAATTAGC+TGG | - | chr7.2:51734666-51734685 | MS.gene023116:intron | 40.0% | |
CTCAGAAGCTTCAATCTCAA+AGG | + | chr7.2:51735326-51735345 | None:intergenic | 40.0% | |
CTGATCAGAGAAGAGTTTAG+TGG | - | chr7.2:51735586-51735605 | MS.gene023116:CDS | 40.0% | |
GTCAAACCTCCCATAGAAAA+AGG | + | chr7.2:51735376-51735395 | None:intergenic | 40.0% | |
TCTCAATGGCAAGTCAGTAA+AGG | - | chr7.2:51735054-51735073 | MS.gene023116:intron | 40.0% | |
TCTGATGGTTTCAAAGTCCT+TGG | - | chr7.2:51735118-51735137 | MS.gene023116:intron | 40.0% | |
TGCCCTAATAGCACATGTTA+AGG | + | chr7.2:51733970-51733989 | None:intergenic | 40.0% | |
TGGTAAGGGAGAAACATGAT+TGG | + | chr7.2:51734148-51734167 | None:intergenic | 40.0% | |
TGTTTGAAGGAAGGTTGAAG+AGG | + | chr7.2:51733263-51733282 | None:intergenic | 40.0% | |
TTCAAGATCTTCTTCCATGC+GGG | - | chr7.2:51734924-51734943 | MS.gene023116:intron | 40.0% | |
TTGCTTCCATACACCACATA+TGG | + | chr7.2:51734730-51734749 | None:intergenic | 40.0% | |
! | AAATGCTAACTTGTGCCCTT+AGG | - | chr7.2:51733839-51733858 | MS.gene023116:intron | 40.0% |
! | AGAAACAAGGTGAGAGCATA+AGG | + | chr7.2:51733165-51733184 | None:intergenic | 40.0% |
! | AGCTTCGGATTCTGAGTTTT+TGG | - | chr7.2:51735237-51735256 | MS.gene023116:intron | 40.0% |
! | CGCAAAATGAAAGCATGGAA+AGG | + | chr7.2:51734271-51734290 | None:intergenic | 40.0% |
! | GCTTTACCTTTTTCTATGGG+AGG | - | chr7.2:51735367-51735386 | MS.gene023116:CDS | 40.0% |
! | GTCTGAACCTGCATTCTTTT+TGG | + | chr7.2:51734243-51734262 | None:intergenic | 40.0% |
! | TAAGGATTTGAGATCACCAG+TGG | + | chr7.2:51733147-51733166 | None:intergenic | 40.0% |
! | TCCATGCTTTCATTTTGCGT+GGG | - | chr7.2:51734272-51734291 | MS.gene023116:intron | 40.0% |
! | TGCAGTTGATTTCGTCAACA+AGG | - | chr7.2:51733316-51733335 | MS.gene023116:CDS | 40.0% |
! | TGTTCATGGAAACGTTGGTT+AGG | + | chr7.2:51732977-51732996 | None:intergenic | 40.0% |
! | TTCCATGCTTTCATTTTGCG+TGG | - | chr7.2:51734271-51734290 | MS.gene023116:intron | 40.0% |
!! | CAAGTGTTTGGTGATGTTCA+TGG | + | chr7.2:51732991-51733010 | None:intergenic | 40.0% |
!! | CATGATGGATCAACCTATCA+TGG | + | chr7.2:51733619-51733638 | None:intergenic | 40.0% |
!! | TTACTGACTTGCCATTGAGA+AGG | + | chr7.2:51735054-51735073 | None:intergenic | 40.0% |
!!! | GGAGAGAAGTTGTTTTTGAG+TGG | + | chr7.2:51733108-51733127 | None:intergenic | 40.0% |
CACCACATATGGAGAGAGTT+AGG | + | chr7.2:51734719-51734738 | None:intergenic | 45.0% | |
CACCTAACTCTCTCCATATG+TGG | - | chr7.2:51734714-51734733 | MS.gene023116:intron | 45.0% | |
CCATTGACGTAAGACAAGCA+AGG | + | chr7.2:51733218-51733237 | None:intergenic | 45.0% | |
CCTCGTGAAGAAGTCAAAGT+AGG | - | chr7.2:51735271-51735290 | MS.gene023116:CDS | 45.0% | |
CCTTGCTTGTCTTACGTCAA+TGG | - | chr7.2:51733215-51733234 | MS.gene023116:CDS | 45.0% | |
CTCTCTCCATATGTGGTGTA+TGG | - | chr7.2:51734721-51734740 | MS.gene023116:intron | 45.0% | |
GGGAGGTTTGACAAAAATGG+TGG | - | chr7.2:51735384-51735403 | MS.gene023116:CDS | 45.0% | |
GGGCCGAAAAGAAGACAAAA+GGG | - | chr7.2:51734897-51734916 | MS.gene023116:intron | 45.0% | |
GGTGATGTTCATGGAAACGT+TGG | + | chr7.2:51732982-51733001 | None:intergenic | 45.0% | |
GTAGTTAGTAGCACATGCGA+GGG | - | chr7.2:51734457-51734476 | MS.gene023116:intron | 45.0% | |
GTCTTACGTCAATGGTGTGT+GGG | - | chr7.2:51733223-51733242 | MS.gene023116:CDS | 45.0% | |
GTCTTGCCAATTAGCTGGAT+AGG | - | chr7.2:51734671-51734690 | MS.gene023116:intron | 45.0% | |
TCCCACGCAAAATGAAAGCA+TGG | + | chr7.2:51734276-51734295 | None:intergenic | 45.0% | |
TGGGCCGAAAAGAAGACAAA+AGG | - | chr7.2:51734896-51734915 | MS.gene023116:intron | 45.0% | |
TGTAGTTAGTAGCACATGCG+AGG | - | chr7.2:51734456-51734475 | MS.gene023116:intron | 45.0% | |
TGTCTTACGTCAATGGTGTG+TGG | - | chr7.2:51733222-51733241 | MS.gene023116:CDS | 45.0% | |
TTTCTCCAGTCTGAATCCAC+TGG | - | chr7.2:51733128-51733147 | MS.gene023116:CDS | 45.0% | |
! | AGTGGATTCAGACTGGAGAA+AGG | + | chr7.2:51733129-51733148 | None:intergenic | 45.0% |
! | ATGGTGATGCAGGATCTCAT+CGG | - | chr7.2:51732936-51732955 | MS.gene023116:CDS | 45.0% |
! | CCTACTTTGACTTCTTCACG+AGG | + | chr7.2:51735274-51735293 | None:intergenic | 45.0% |
! | CTTGTTTCTTCTGTGCTCTC+CGG | - | chr7.2:51733176-51733195 | MS.gene023116:CDS | 45.0% |
! | TTGTTTCTTCTGTGCTCTCC+GGG | - | chr7.2:51733177-51733196 | MS.gene023116:CDS | 45.0% |
!! | GACAACCCATCTTTTTCGTC+AGG | + | chr7.2:51735199-51735218 | None:intergenic | 45.0% |
!!! | TTGTTTTTGAGTGGGACCCT+CGG | + | chr7.2:51733099-51733118 | None:intergenic | 45.0% |
!! | ATTATTATAGAAATATAATA+TGG | - | chr7.2:51733534-51733553 | MS.gene023116:CDS | 5.0% |
CGGCTACAAAGTCGATTGGA+GGG | + | chr7.2:51735549-51735568 | None:intergenic | 50.0% | |
GGTAGCGATCATACTGAGCA+CGG | + | chr7.2:51733072-51733091 | None:intergenic | 50.0% | |
GGTCAGTTCACAGCTTAACG+AGG | - | chr7.2:51734945-51734964 | MS.gene023116:intron | 50.0% | |
GTGCTCAGTATGATCGCTAC+CGG | - | chr7.2:51733071-51733090 | MS.gene023116:CDS | 50.0% | |
TCGGCTACAAAGTCGATTGG+AGG | + | chr7.2:51735550-51735569 | None:intergenic | 50.0% | |
TGCTCAGTATGATCGCTACC+GGG | - | chr7.2:51733072-51733091 | MS.gene023116:CDS | 50.0% | |
TGGTCGGCTACAAAGTCGAT+TGG | + | chr7.2:51735553-51735572 | None:intergenic | 50.0% | |
TGTTTCTTCTGTGCTCTCCG+GGG | - | chr7.2:51733178-51733197 | MS.gene023116:CDS | 50.0% | |
! | AGCACGGTGTTGAGCGATAA+TGG | + | chr7.2:51733056-51733075 | None:intergenic | 50.0% |
! | CGGAGAGCACAGAAGAAACA+AGG | + | chr7.2:51733178-51733197 | None:intergenic | 50.0% |
! | GATCACCAGTGGATTCAGAC+TGG | + | chr7.2:51733136-51733155 | None:intergenic | 50.0% |
AAGCTGTGAACTGACCCGCA+TGG | + | chr7.2:51734941-51734960 | None:intergenic | 55.0% | |
AAGTCGATTGGAGGGAGCAG+AGG | + | chr7.2:51735541-51735560 | None:intergenic | 55.0% | |
ACGCGTGCATGCCAAGCTAA+CGG | + | chr7.2:51735503-51735522 | None:intergenic | 55.0% | |
AGTCGATTGGAGGGAGCAGA+GGG | + | chr7.2:51735540-51735559 | None:intergenic | 55.0% | |
TGCAGCAGTGACCGTTAGCT+TGG | - | chr7.2:51735489-51735508 | MS.gene023116:CDS | 55.0% | |
ATGATCGCTACCGGGTCCGA+GGG | - | chr7.2:51733080-51733099 | MS.gene023116:CDS | 60.0% | |
GCATGCACGCGTTCTCGGTA+CGG | - | chr7.2:51735511-51735530 | MS.gene023116:CDS | 60.0% | |
GCTTGGCATGCACGCGTTCT+CGG | - | chr7.2:51735506-51735525 | MS.gene023116:CDS | 60.0% | |
GTCGATTGGAGGGAGCAGAG+GGG | + | chr7.2:51735539-51735558 | None:intergenic | 60.0% | |
TATGATCGCTACCGGGTCCG+AGG | - | chr7.2:51733079-51733098 | MS.gene023116:CDS | 60.0% | |
TTGAGTGGGACCCTCGGACC+CGG | + | chr7.2:51733093-51733112 | None:intergenic | 65.0% | |
AGGGCCACTAGTGCGAGCCC+CGG | + | chr7.2:51733198-51733217 | None:intergenic | 70.0% | |
CTCTCCGGGGCTCGCACTAG+TGG | - | chr7.2:51733191-51733210 | MS.gene023116:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 51732936 | 51735654 | 51732936 | ID=MS.gene023116 |
chr7.2 | mRNA | 51732936 | 51735654 | 51732936 | ID=MS.gene023116.t1;Parent=MS.gene023116 |
chr7.2 | exon | 51735253 | 51735654 | 51735253 | ID=MS.gene023116.t1.exon1;Parent=MS.gene023116.t1 |
chr7.2 | CDS | 51735253 | 51735654 | 51735253 | ID=cds.MS.gene023116.t1;Parent=MS.gene023116.t1 |
chr7.2 | exon | 51732936 | 51733724 | 51732936 | ID=MS.gene023116.t1.exon2;Parent=MS.gene023116.t1 |
chr7.2 | CDS | 51732936 | 51733724 | 51732936 | ID=cds.MS.gene023116.t1;Parent=MS.gene023116.t1 |
Gene Sequence |
Protein sequence |