AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023116


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023116.t1 MTR_7g451890 89.169 397 42 1 1 396 6 402 0.0 689
MS.gene023116.t1 MTR_7g047780 87.909 397 47 1 1 396 6 402 0.0 674
MS.gene023116.t1 MTR_7g050750 85.101 396 58 1 2 396 1 396 0.0 658
MS.gene023116.t1 MTR_7g050810 82.995 394 66 1 4 396 11 404 0.0 636
MS.gene023116.t1 MTR_3g101180 64.232 397 135 3 5 394 2 398 1.41e-173 490
MS.gene023116.t1 MTR_8g461160 66.496 391 124 4 9 395 6 393 4.44e-173 488
MS.gene023116.t1 MTR_7g050830 78.438 320 37 3 4 302 11 319 1.59e-172 484
MS.gene023116.t1 MTR_3g101010 62.982 389 139 3 9 396 5 389 1.22e-166 472
MS.gene023116.t1 MTR_4g045707 61.697 389 142 4 9 396 6 388 3.55e-163 463
MS.gene023116.t1 MTR_3g018740 62.148 391 140 5 7 395 3 387 7.00e-163 462
MS.gene023116.t1 MTR_3g101130 61.381 391 141 4 9 396 6 389 1.48e-161 459
MS.gene023116.t1 MTR_8g027395 59.335 391 150 3 7 396 15 397 4.50e-159 453
MS.gene023116.t1 MTR_3g101030 57.606 401 145 5 15 396 35 429 4.04e-152 437
MS.gene023116.t1 MTR_3g048000 57.623 387 138 5 10 394 28 390 1.04e-149 429
MS.gene023116.t1 MTR_4g088525 59.945 362 138 2 34 394 12 367 1.04e-146 421
MS.gene023116.t1 MTR_8g027420 56.266 391 151 4 7 396 4 375 1.27e-146 421
MS.gene023116.t1 MTR_2g046030 55.980 393 161 4 7 395 3 387 2.76e-145 418
MS.gene023116.t1 MTR_2g045980 55.216 393 164 4 7 395 3 387 7.20e-143 412
MS.gene023116.t1 MTR_3g101050 57.326 389 134 6 13 394 33 396 3.34e-139 403
MS.gene023116.t1 MTR_3g101200 56.234 393 144 6 3 394 25 390 6.58e-138 399
MS.gene023116.t1 MTR_3g015620 53.283 396 150 7 6 395 13 379 1.43e-132 385
MS.gene023116.t1 MTR_4g088535 54.688 384 149 4 9 391 7 366 1.79e-132 385
MS.gene023116.t1 MTR_3g102920 53.886 386 135 7 13 394 62 408 5.10e-127 372
MS.gene023116.t1 MTR_3g101190 51.604 374 115 3 24 396 4 312 2.18e-123 359
MS.gene023116.t1 MTR_3g100995 61.390 259 89 3 141 396 14 264 1.89e-110 325
MS.gene023116.t1 MTR_3g018747 60.076 263 87 3 134 395 9 254 1.31e-102 304
MS.gene023116.t1 MTR_3g015760 58.935 263 102 3 134 395 23 280 7.84e-96 288
MS.gene023116.t1 MTR_3g100010 48.571 315 113 4 31 311 37 336 6.87e-92 280
MS.gene023116.t1 MTR_3g111160 59.821 224 84 3 175 396 1 220 4.49e-81 248
MS.gene023116.t1 MTR_3g114310 40.369 379 203 10 34 396 39 410 4.13e-80 252
MS.gene023116.t1 MTR_3g100520 58.482 224 76 4 175 396 1 209 7.63e-80 244
MS.gene023116.t1 MTR_3g101110 56.540 237 73 4 137 370 71 280 2.85e-75 235
MS.gene023116.t1 MTR_2g046410 57.277 213 83 2 187 395 140 348 1.38e-74 236
MS.gene023116.t1 MTR_3g099970 59.694 196 62 2 134 329 20 198 2.73e-73 227
MS.gene023116.t1 MTR_3g101150 64.557 158 52 2 240 394 1 157 1.02e-65 206
MS.gene023116.t1 MTR_3g101020 51.042 192 59 3 208 396 1 160 1.99e-56 182
MS.gene023116.t1 MTR_3g102870 53.939 165 76 0 197 361 1 165 6.99e-54 176
MS.gene023116.t1 MTR_3g111150 48.571 175 65 3 12 186 2 151 2.46e-48 162
MS.gene023116.t1 MTR_3g100990 55.906 127 53 2 9 134 5 129 2.55e-33 130
MS.gene023116.t1 MTR_3g101140 49.515 103 51 1 294 396 15 116 3.50e-21 88.6
MS.gene023116.t1 MTR_4g093550 47.126 87 44 1 7 93 4 88 1.55e-14 69.3
MS.gene023116.t1 MTR_6g046890 58.929 56 23 0 34 89 22 77 5.11e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023116.t1 AT1G47710 51.706 381 178 5 17 394 13 390 3.24e-131 382
MS.gene023116.t1 AT1G47710 51.706 381 178 5 17 394 40 417 2.84e-130 381
MS.gene023116.t1 AT2G26390 45.685 394 197 6 7 393 3 386 1.19e-116 345
MS.gene023116.t1 AT2G25240 47.059 391 192 7 7 393 3 382 4.31e-115 341
MS.gene023116.t1 AT3G45220 44.584 397 201 7 7 393 3 390 4.09e-113 336
MS.gene023116.t1 AT1G62170 44.304 395 185 7 7 393 64 431 1.74e-104 315
MS.gene023116.t1 AT1G64030 44.020 393 190 8 7 393 3 371 3.19e-99 300
MS.gene023116.t1 AT1G62170 40.888 428 185 8 7 393 64 464 2.94e-97 298
MS.gene023116.t1 AT2G14540 46.721 366 168 6 32 393 55 397 8.31e-97 295
MS.gene023116.t1 AT2G35580 41.769 407 187 13 1 393 1 371 3.01e-92 282
MS.gene023116.t1 AT1G64010 45.000 220 95 4 175 393 1 195 7.62e-60 193
MS.gene023116.t1 AT1G64010 44.878 205 87 4 190 393 2 181 3.08e-53 175
MS.gene023116.t1 AT1G63280 57.627 118 46 2 131 246 5 120 1.44e-36 129
MS.gene023116.t1 AT1G62160 38.462 182 85 3 214 393 62 218 2.41e-33 124
MS.gene023116.t1 AT1G51330 50.893 112 52 3 132 240 29 140 4.42e-24 99.0
MS.gene023116.t1 AT1G64020 34.862 109 69 2 17 124 13 120 7.40e-12 62.4

Find 89 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGAGAAGAAGTGAATTTA+TGG 0.183576 7.2:-51733692 MS.gene023116:CDS
TCTGAGTTGCTAAAGAAATT+AGG 0.188756 7.2:-51733228 MS.gene023116:CDS
AGTCAAGAACTTTATGTTTC+CGG 0.215284 7.2:-51733150 MS.gene023116:CDS
CCATCTTTGCCTTGTTTATA+AGG 0.244454 7.2:+51733423 None:intergenic
ACATAAAGTTCTTGACTTAT+AGG 0.247103 7.2:+51733156 None:intergenic
GTCAAACCTCCCATAGAAAA+AGG 0.264352 7.2:+51733195 None:intergenic
ATCATTCTTGCTGGTCATAA+AGG 0.273820 7.2:+51733488 None:intergenic
AACCTTTCCAACAAAGAGTA+TGG 0.349311 7.2:+51732957 None:intergenic
CTTGTTTCTTCTGTGCTCTC+CGG 0.354447 7.2:-51735392 MS.gene023116:CDS
AAGTCAAAGTAGGCAAGTTC+AGG 0.369646 7.2:-51733287 MS.gene023116:CDS
CCTTGCTTGTCTTACGTCAA+TGG 0.370001 7.2:-51735353 MS.gene023116:CDS
TCTGATGGTTTCAAAGTCCT+TGG 0.370663 7.2:-51733450 MS.gene023116:CDS
TTGTTTCTTCTGTGCTCTCC+GGG 0.376107 7.2:-51735391 MS.gene023116:CDS
GCTTGGCATGCACGCGTTCT+CGG 0.387428 7.2:-51733062 MS.gene023116:CDS
CTGATCAGAGAAGAGTTTAG+TGG 0.389922 7.2:-51732982 MS.gene023116:CDS
AGAAACAAGGTGAGAGCATA+AGG 0.391341 7.2:+51735406 None:intergenic
TTGATTGGATAACAAGTGTT+TGG 0.423243 7.2:+51735568 None:intergenic
TCATTCTTGCTGGTCATAAA+GGG 0.426111 7.2:+51733489 None:intergenic
TCAAAGGAAATATTGAATCT+TGG 0.427509 7.2:+51733261 None:intergenic
GATAAACTGATCATTCTTGC+TGG 0.430849 7.2:+51733479 None:intergenic
TTTGATTGATAAAGTAGCTT+CGG 0.430887 7.2:-51733346 MS.gene023116:CDS
AGTAGTCATAAGTTGTTTGA+AGG 0.434567 7.2:+51735295 None:intergenic
AGCACGGTGTTGAGCGATAA+TGG 0.435236 7.2:+51735515 None:intergenic
GTCATAAGTTGTTTGAAGGA+AGG 0.435473 7.2:+51735299 None:intergenic
CAAGTGTTTGGTGATGTTCA+TGG 0.446905 7.2:+51735580 None:intergenic
GTCTTACGTCAATGGTGTGT+GGG 0.450358 7.2:-51735345 MS.gene023116:CDS
AGTGGAACCATACTCTTTGT+TGG 0.451399 7.2:-51732964 MS.gene023116:CDS
AAGGTTGTCAATCCTCTTGA+TGG 0.463069 7.2:-51732940 MS.gene023116:CDS
CTCTCCGGGGCTCGCACTAG+TGG 0.464699 7.2:-51735377 MS.gene023116:CDS
TGGGCCGAAAAGAAGACAAA+AGG 0.471958 7.2:-51733672 MS.gene023116:CDS
TGCAGCAGTGACCGTTAGCT+TGG 0.472957 7.2:-51733079 MS.gene023116:CDS
GTTGCTAAAGAAATTAGGAT+TGG 0.473453 7.2:-51733223 MS.gene023116:CDS
GAGAGAAGAAGTGAATTTAT+GGG 0.474520 7.2:-51733691 MS.gene023116:CDS
CAGTTTATCAGTTCTTCTGA+TGG 0.475716 7.2:-51733465 MS.gene023116:CDS
CCTTATAAACAAGGCAAAGA+TGG 0.475837 7.2:-51733423 MS.gene023116:CDS
TGTTCATGGAAACGTTGGTT+AGG 0.481229 7.2:+51735594 None:intergenic
TTCATTGAAGTAAACGAAGA+AGG 0.482300 7.2:-51733111 MS.gene023116:CDS
AAGAAGAAGAATGGTGATGC+AGG 0.487345 7.2:-51735642 None:intergenic
AACCATACTCTTTGTTGGAA+AGG 0.488595 7.2:-51732959 MS.gene023116:CDS
TTTCTCCAGTCTGAATCCAC+TGG 0.508452 7.2:-51735440 MS.gene023116:CDS
GCATGCACGCGTTCTCGGTA+CGG 0.512534 7.2:-51733057 MS.gene023116:CDS
TTCAAGATCTTCTTCCATGC+GGG 0.517087 7.2:-51733644 MS.gene023116:CDS
GCAAATGCACTATACTTCAA+AGG 0.528381 7.2:-51733591 MS.gene023116:CDS
AGTCGATTGGAGGGAGCAGA+GGG 0.528422 7.2:+51733031 None:intergenic
CTTGGTCTTCCTTATAAACA+AGG 0.530839 7.2:-51733432 MS.gene023116:CDS
GTGCTCAGTATGATCGCTAC+CGG 0.530879 7.2:-51735497 MS.gene023116:CDS
CTCAGAAGCTTCAATCTCAA+AGG 0.535018 7.2:+51733245 None:intergenic
GAAAGACTTCTGAAATATGC+CGG 0.537794 7.2:+51733131 None:intergenic
AGTGGATTCAGACTGGAGAA+AGG 0.552727 7.2:+51735442 None:intergenic
TCTCAATGGCAAGTCAGTAA+AGG 0.555621 7.2:-51733514 MS.gene023116:CDS
CACTATACTTCAAAGGAGTG+TGG 0.556458 7.2:-51733584 MS.gene023116:CDS
GGGCCGAAAAGAAGACAAAA+GGG 0.559915 7.2:-51733671 MS.gene023116:CDS
GTTTGATACTTTCAAAACAA+AGG 0.564167 7.2:-51733553 MS.gene023116:CDS
AGGGCCACTAGTGCGAGCCC+CGG 0.567746 7.2:+51735373 None:intergenic
TTGAGTGGGACCCTCGGACC+CGG 0.572311 7.2:+51735478 None:intergenic
CCTCGTGAAGAAGTCAAAGT+AGG 0.574480 7.2:-51733297 MS.gene023116:CDS
TGTTTGAAGGAAGGTTGAAG+AGG 0.574991 7.2:+51735308 None:intergenic
TGCAGTTGATTTCGTCAACA+AGG 0.577204 7.2:-51735252 MS.gene023116:intron
CGGAGAGCACAGAAGAAACA+AGG 0.577896 7.2:+51735393 None:intergenic
TATGATCGCTACCGGGTCCG+AGG 0.579880 7.2:-51735489 MS.gene023116:CDS
TGTCTTACGTCAATGGTGTG+TGG 0.580488 7.2:-51735346 MS.gene023116:CDS
TTACTGACTTGCCATTGAGA+AGG 0.583004 7.2:+51733517 None:intergenic
TGGTCGGCTACAAAGTCGAT+TGG 0.583969 7.2:+51733018 None:intergenic
ACTATACTTCAAAGGAGTGT+GGG 0.588475 7.2:-51733583 MS.gene023116:CDS
GATCACCAGTGGATTCAGAC+TGG 0.590752 7.2:+51735435 None:intergenic
AGGTTGTCAATCCTCTTGAT+GGG 0.591371 7.2:-51732939 MS.gene023116:CDS
TCGGCTACAAAGTCGATTGG+AGG 0.593325 7.2:+51733021 None:intergenic
TTATCCAATCAAAATCTCAA+AGG 0.595741 7.2:-51735557 MS.gene023116:CDS
ATTCAAGATCTTCTTCCATG+CGG 0.601926 7.2:-51733645 MS.gene023116:CDS
AAATGTAAATAGAGAACGCA+CGG 0.605169 7.2:+51733400 None:intergenic
TTCAACAATCACCCATCAAG+AGG 0.605491 7.2:+51732928 None:intergenic
AAGTCGATTGGAGGGAGCAG+AGG 0.607935 7.2:+51733030 None:intergenic
CGGCTACAAAGTCGATTGGA+GGG 0.609881 7.2:+51733022 None:intergenic
ACGCGTGCATGCCAAGCTAA+CGG 0.612153 7.2:+51733068 None:intergenic
ATGATCGCTACCGGGTCCGA+GGG 0.612325 7.2:-51735488 MS.gene023116:CDS
CTTGTTTATAAGGAAGACCA+AGG 0.612910 7.2:+51733433 None:intergenic
TGCTCAGTATGATCGCTACC+GGG 0.616181 7.2:-51735496 MS.gene023116:CDS
CATTGACGTAAGACAAGCAA+GGG 0.620054 7.2:+51735354 None:intergenic
TAAGGATTTGAGATCACCAG+TGG 0.620599 7.2:+51735424 None:intergenic
GGTGATGTTCATGGAAACGT+TGG 0.634641 7.2:+51735589 None:intergenic
TGTTTCTTCTGTGCTCTCCG+GGG 0.635190 7.2:-51735390 MS.gene023116:CDS
CATTCTTGCTGGTCATAAAG+GGG 0.644450 7.2:+51733490 None:intergenic
ATGGTGATGCAGGATCTCAT+CGG 0.678758 7.2:-51735632 MS.gene023116:CDS
AAGCTGTGAACTGACCCGCA+TGG 0.684890 7.2:+51733630 None:intergenic
GGTCAGTTCACAGCTTAACG+AGG 0.693418 7.2:-51733623 MS.gene023116:CDS
CCTACTTTGACTTCTTCACG+AGG 0.700753 7.2:+51733297 None:intergenic
CCATTGACGTAAGACAAGCA+AGG 0.702901 7.2:+51735353 None:intergenic
GGTAGCGATCATACTGAGCA+CGG 0.705369 7.2:+51735499 None:intergenic
GTCGATTGGAGGGAGCAGAG+GGG 0.752667 7.2:+51733032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTTTTTTAGTAG+AGG - chr7.2:51733392-51733411 MS.gene023116:CDS 10.0%
!!! AAAACTTAAATTTTTCTGTT+TGG + chr7.2:51734207-51734226 None:intergenic 15.0%
!!! TCAAATGATTTATTTTAACA+TGG - chr7.2:51734814-51734833 MS.gene023116:intron 15.0%
!! AAAAATCAATAATGTGACTT+TGG - chr7.2:51734408-51734427 MS.gene023116:intron 20.0%
!! AAAATATGACAAGGATAATT+AGG - chr7.2:51734549-51734568 MS.gene023116:intron 20.0%
!! AAATATGACAAGGATAATTA+GGG - chr7.2:51734550-51734569 MS.gene023116:intron 20.0%
!! GAAACAAAGTTATATGTAAA+AGG + chr7.2:51734185-51734204 None:intergenic 20.0%
!! GCTCATTCTATTAAAATAAT+AGG - chr7.2:51733661-51733680 MS.gene023116:CDS 20.0%
!!! ATTGGTAACAGTTTATTTTA+GGG + chr7.2:51734006-51734025 None:intergenic 20.0%
!!! CAATCTTTTGAGAAATAAAT+TGG + chr7.2:51733908-51733927 None:intergenic 20.0%
!!! TATTGGTAACAGTTTATTTT+AGG + chr7.2:51734007-51734026 None:intergenic 20.0%
! AAAAGGATTGATCTAGAAAT+TGG + chr7.2:51734168-51734187 None:intergenic 25.0%
! ACATAAAGTTCTTGACTTAT+AGG + chr7.2:51735415-51735434 None:intergenic 25.0%
! ACTGTCTATAAAATATGACA+AGG - chr7.2:51734540-51734559 MS.gene023116:intron 25.0%
! ACTTGTATGTAATTGTACTA+TGG + chr7.2:51734076-51734095 None:intergenic 25.0%
! ATTGATCTAGAAATTGGTAA+GGG + chr7.2:51734162-51734181 None:intergenic 25.0%
! CTTGTATGTAATTGTACTAT+GGG + chr7.2:51734075-51734094 None:intergenic 25.0%
! GAATGAGCATATTGATATTT+AGG + chr7.2:51733804-51733823 None:intergenic 25.0%
! GATTGGATTGTAATGTTAAT+AGG + chr7.2:51734131-51734150 None:intergenic 25.0%
! GTTTGATACTTTCAAAACAA+AGG - chr7.2:51735015-51735034 MS.gene023116:intron 25.0%
! TAAACTGTTACCAATAATGT+CGG - chr7.2:51734011-51734030 MS.gene023116:intron 25.0%
! TATCTTAATATGTGTCCTAA+GGG + chr7.2:51733857-51733876 None:intergenic 25.0%
! TCAAAGGAAATATTGAATCT+TGG + chr7.2:51735310-51735329 None:intergenic 25.0%
! TTATCCAATCAAAATCTCAA+AGG - chr7.2:51733011-51733030 MS.gene023116:CDS 25.0%
! TTTGATTGATAAAGTAGCTT+CGG - chr7.2:51735222-51735241 MS.gene023116:intron 25.0%
!!! ACAAGTTTGTTTTTCACAAT+TGG + chr7.2:51734352-51734371 None:intergenic 25.0%
!!! TACAATTGATACTGATTTGA+AGG - chr7.2:51734844-51734863 MS.gene023116:intron 25.0%
!!! TTATTTGTTGTCACAAGTTA+GGG - chr7.2:51733350-51733369 MS.gene023116:CDS 25.0%
!!! TTTATTTGTTGTCACAAGTT+AGG - chr7.2:51733349-51733368 MS.gene023116:CDS 25.0%
AAATGTAAATAGAGAACGCA+CGG + chr7.2:51735171-51735190 None:intergenic 30.0%
AATAAACCTATCCAGCTAAT+TGG + chr7.2:51734680-51734699 None:intergenic 30.0%
ACATATTGAGCATATTGAAC+AGG + chr7.2:51733695-51733714 None:intergenic 30.0%
ACTCGTTAGATTTAACATGA+TGG + chr7.2:51733634-51733653 None:intergenic 30.0%
ACTTGTGTATATATAGTGCA+AGG - chr7.2:51734366-51734385 MS.gene023116:intron 30.0%
AGGTTAAATGTCTCAGAAAA+TGG + chr7.2:51734592-51734611 None:intergenic 30.0%
AGTAGTCATAAGTTGTTTGA+AGG + chr7.2:51733276-51733295 None:intergenic 30.0%
AGTCAAGAACTTTATGTTTC+CGG - chr7.2:51735418-51735437 MS.gene023116:CDS 30.0%
AGTCCATTATTGTGCTTTAA+AGG + chr7.2:51734102-51734121 None:intergenic 30.0%
ATAGTACTAACCGACATTAT+TGG + chr7.2:51734024-51734043 None:intergenic 30.0%
CTCTGATCAGAAACAAAAAA+GGG + chr7.2:51735576-51735595 None:intergenic 30.0%
GAGAGAAGAAGTGAATTTAT+GGG - chr7.2:51734877-51734896 MS.gene023116:intron 30.0%
GATTGATCTAGAAATTGGTA+AGG + chr7.2:51734163-51734182 None:intergenic 30.0%
GGATCAATAATATCTCACTT+AGG + chr7.2:51734331-51734350 None:intergenic 30.0%
GTATCTTAATATGTGTCCTA+AGG + chr7.2:51733858-51733877 None:intergenic 30.0%
GTTCAATATGCTCAATATGT+AGG - chr7.2:51733695-51733714 MS.gene023116:CDS 30.0%
GTTGCTAAAGAAATTAGGAT+TGG - chr7.2:51735345-51735364 MS.gene023116:CDS 30.0%
TATGAAAGACAGCACAAAAA+CGG + chr7.2:51733491-51733510 None:intergenic 30.0%
TCAACACAAAGTTTGTAAGT+CGG + chr7.2:51733732-51733751 None:intergenic 30.0%
TCTCTGATCAGAAACAAAAA+AGG + chr7.2:51735577-51735596 None:intergenic 30.0%
TCTGAGTTGCTAAAGAAATT+AGG - chr7.2:51735340-51735359 MS.gene023116:CDS 30.0%
TTCATTGAAGTAAACGAAGA+AGG - chr7.2:51735457-51735476 MS.gene023116:CDS 30.0%
TTCTCAGTTGCTTGATTAAT+TGG - chr7.2:51733767-51733786 MS.gene023116:intron 30.0%
TTGATTGGATAACAAGTGTT+TGG + chr7.2:51733003-51733022 None:intergenic 30.0%
TTGTATTCAAAATGAGTCCA+AGG + chr7.2:51734612-51734631 None:intergenic 30.0%
! AAACCTTAACATGTGCTATT+AGG - chr7.2:51733964-51733983 MS.gene023116:intron 30.0%
! AACCTTAACATGTGCTATTA+GGG - chr7.2:51733965-51733984 MS.gene023116:intron 30.0%
! ATTTTTGAACAGACCATGAT+AGG - chr7.2:51733603-51733622 MS.gene023116:CDS 30.0%
!! TATGATTTTGACCTTCTCAA+TGG - chr7.2:51735040-51735059 MS.gene023116:intron 30.0%
!!! ATTGGCTTTACCTTTTTCTA+TGG - chr7.2:51735363-51735382 MS.gene023116:CDS 30.0%
!!! CATAAGTTAGTTTTCAGTGT+TGG - chr7.2:51734296-51734315 MS.gene023116:intron 30.0%
!!! CTTTCCTTTGAGATTTTGAT+TGG + chr7.2:51733018-51733037 None:intergenic 30.0%
!!! TTGGCTTTACCTTTTTCTAT+GGG - chr7.2:51735364-51735383 MS.gene023116:CDS 30.0%
!!! TTTTCTGAGACATTTAACCT+TGG - chr7.2:51734592-51734611 MS.gene023116:intron 30.0%
AACCATACTCTTTGTTGGAA+AGG - chr7.2:51735609-51735628 MS.gene023116:CDS 35.0%
AACCTTTCCAACAAAGAGTA+TGG + chr7.2:51735614-51735633 None:intergenic 35.0%
ATCATTCTTGCTGGTCATAA+AGG + chr7.2:51735083-51735102 None:intergenic 35.0%
ATTCAAGATCTTCTTCCATG+CGG - chr7.2:51734923-51734942 MS.gene023116:intron 35.0%
CAGTTTATCAGTTCTTCTGA+TGG - chr7.2:51735103-51735122 MS.gene023116:intron 35.0%
CCATATACCAAAAAGAATGC+AGG - chr7.2:51734233-51734252 MS.gene023116:intron 35.0%
CCTTATAAACAAGGCAAAGA+TGG - chr7.2:51735145-51735164 MS.gene023116:intron 35.0%
CGAGAGAAGAAGTGAATTTA+TGG - chr7.2:51734876-51734895 MS.gene023116:intron 35.0%
CTATGGGTTTAAGCTCAATA+TGG + chr7.2:51734059-51734078 None:intergenic 35.0%
CTTGTTTATAAGGAAGACCA+AGG + chr7.2:51735138-51735157 None:intergenic 35.0%
GATAAACTGATCATTCTTGC+TGG + chr7.2:51735092-51735111 None:intergenic 35.0%
GCAAATGCACTATACTTCAA+AGG - chr7.2:51734977-51734996 MS.gene023116:intron 35.0%
GGATAATTAGGGCATGTAAT+TGG - chr7.2:51734561-51734580 MS.gene023116:intron 35.0%
GTCATAAGTTGTTTGAAGGA+AGG + chr7.2:51733272-51733291 None:intergenic 35.0%
TAATCAAGCAACTGAGAAAG+AGG + chr7.2:51733765-51733784 None:intergenic 35.0%
TATGGGAGGTTTGACAAAAA+TGG - chr7.2:51735381-51735400 MS.gene023116:CDS 35.0%
TATTAGGGCACAAGTTAACA+TGG - chr7.2:51733980-51733999 MS.gene023116:intron 35.0%
TCATTCTTGCTGGTCATAAA+GGG + chr7.2:51735082-51735101 None:intergenic 35.0%
TGATCAGAAACAAAAAAGGG+TGG + chr7.2:51735573-51735592 None:intergenic 35.0%
TTCTTCCTGACGAAAAAGAT+GGG - chr7.2:51735191-51735210 MS.gene023116:intron 35.0%
TTTCTTCCTGACGAAAAAGA+TGG - chr7.2:51735190-51735209 MS.gene023116:intron 35.0%
! AAGCCCTTTTGTCTTCTTTT+CGG + chr7.2:51734903-51734922 None:intergenic 35.0%
! ACTATACTTCAAAGGAGTGT+GGG - chr7.2:51734985-51735004 MS.gene023116:intron 35.0%
! CTTGGTCTTCCTTATAAACA+AGG - chr7.2:51735136-51735155 MS.gene023116:intron 35.0%
! GCAAAATGAAAGCATGGAAA+GGG + chr7.2:51734270-51734289 None:intergenic 35.0%
! GTTTTTGTGCTGTCTTTCAT+AGG - chr7.2:51733490-51733509 MS.gene023116:CDS 35.0%
!! CCATCTTTGCCTTGTTTATA+AGG + chr7.2:51735148-51735167 None:intergenic 35.0%
!! CCTGCATTCTTTTTGGTATA+TGG + chr7.2:51734236-51734255 None:intergenic 35.0%
!! GAAAGACTTCTGAAATATGC+CGG + chr7.2:51735440-51735459 None:intergenic 35.0%
!! GTGCCTTTAAAGCACAATAA+TGG - chr7.2:51734096-51734115 MS.gene023116:intron 35.0%
!!! GAGAGAAGTTGTTTTTGAGT+GGG + chr7.2:51733107-51733126 None:intergenic 35.0%
AAGGTTGTCAATCCTCTTGA+TGG - chr7.2:51735628-51735647 MS.gene023116:CDS 40.0%
AAGTCAAAGTAGGCAAGTTC+AGG - chr7.2:51735281-51735300 MS.gene023116:CDS 40.0%
ACACAACTTAAGTGTTAGCG+TGG - chr7.2:51733433-51733452 MS.gene023116:CDS 40.0%
AGGTTGTCAATCCTCTTGAT+GGG - chr7.2:51735629-51735648 MS.gene023116:CDS 40.0%
AGTGGAACCATACTCTTTGT+TGG - chr7.2:51735604-51735623 MS.gene023116:CDS 40.0%
CACTATACTTCAAAGGAGTG+TGG - chr7.2:51734984-51735003 MS.gene023116:intron 40.0%
CAGAAACAAAAAAGGGTGGT+CGG + chr7.2:51735569-51735588 None:intergenic 40.0%
CAGCTAATTGGCAAGACATT+AGG + chr7.2:51734668-51734687 None:intergenic 40.0%
CATTCTTGCTGGTCATAAAG+GGG + chr7.2:51735081-51735100 None:intergenic 40.0%
CATTGACGTAAGACAAGCAA+GGG + chr7.2:51733217-51733236 None:intergenic 40.0%
CTAATGTCTTGCCAATTAGC+TGG - chr7.2:51734666-51734685 MS.gene023116:intron 40.0%
CTCAGAAGCTTCAATCTCAA+AGG + chr7.2:51735326-51735345 None:intergenic 40.0%
CTGATCAGAGAAGAGTTTAG+TGG - chr7.2:51735586-51735605 MS.gene023116:CDS 40.0%
GTCAAACCTCCCATAGAAAA+AGG + chr7.2:51735376-51735395 None:intergenic 40.0%
TCTCAATGGCAAGTCAGTAA+AGG - chr7.2:51735054-51735073 MS.gene023116:intron 40.0%
TCTGATGGTTTCAAAGTCCT+TGG - chr7.2:51735118-51735137 MS.gene023116:intron 40.0%
TGCCCTAATAGCACATGTTA+AGG + chr7.2:51733970-51733989 None:intergenic 40.0%
TGGTAAGGGAGAAACATGAT+TGG + chr7.2:51734148-51734167 None:intergenic 40.0%
TGTTTGAAGGAAGGTTGAAG+AGG + chr7.2:51733263-51733282 None:intergenic 40.0%
TTCAAGATCTTCTTCCATGC+GGG - chr7.2:51734924-51734943 MS.gene023116:intron 40.0%
TTGCTTCCATACACCACATA+TGG + chr7.2:51734730-51734749 None:intergenic 40.0%
! AAATGCTAACTTGTGCCCTT+AGG - chr7.2:51733839-51733858 MS.gene023116:intron 40.0%
! AGAAACAAGGTGAGAGCATA+AGG + chr7.2:51733165-51733184 None:intergenic 40.0%
! AGCTTCGGATTCTGAGTTTT+TGG - chr7.2:51735237-51735256 MS.gene023116:intron 40.0%
! CGCAAAATGAAAGCATGGAA+AGG + chr7.2:51734271-51734290 None:intergenic 40.0%
! GCTTTACCTTTTTCTATGGG+AGG - chr7.2:51735367-51735386 MS.gene023116:CDS 40.0%
! GTCTGAACCTGCATTCTTTT+TGG + chr7.2:51734243-51734262 None:intergenic 40.0%
! TAAGGATTTGAGATCACCAG+TGG + chr7.2:51733147-51733166 None:intergenic 40.0%
! TCCATGCTTTCATTTTGCGT+GGG - chr7.2:51734272-51734291 MS.gene023116:intron 40.0%
! TGCAGTTGATTTCGTCAACA+AGG - chr7.2:51733316-51733335 MS.gene023116:CDS 40.0%
! TGTTCATGGAAACGTTGGTT+AGG + chr7.2:51732977-51732996 None:intergenic 40.0%
! TTCCATGCTTTCATTTTGCG+TGG - chr7.2:51734271-51734290 MS.gene023116:intron 40.0%
!! CAAGTGTTTGGTGATGTTCA+TGG + chr7.2:51732991-51733010 None:intergenic 40.0%
!! CATGATGGATCAACCTATCA+TGG + chr7.2:51733619-51733638 None:intergenic 40.0%
!! TTACTGACTTGCCATTGAGA+AGG + chr7.2:51735054-51735073 None:intergenic 40.0%
!!! GGAGAGAAGTTGTTTTTGAG+TGG + chr7.2:51733108-51733127 None:intergenic 40.0%
CACCACATATGGAGAGAGTT+AGG + chr7.2:51734719-51734738 None:intergenic 45.0%
CACCTAACTCTCTCCATATG+TGG - chr7.2:51734714-51734733 MS.gene023116:intron 45.0%
CCATTGACGTAAGACAAGCA+AGG + chr7.2:51733218-51733237 None:intergenic 45.0%
CCTCGTGAAGAAGTCAAAGT+AGG - chr7.2:51735271-51735290 MS.gene023116:CDS 45.0%
CCTTGCTTGTCTTACGTCAA+TGG - chr7.2:51733215-51733234 MS.gene023116:CDS 45.0%
CTCTCTCCATATGTGGTGTA+TGG - chr7.2:51734721-51734740 MS.gene023116:intron 45.0%
GGGAGGTTTGACAAAAATGG+TGG - chr7.2:51735384-51735403 MS.gene023116:CDS 45.0%
GGGCCGAAAAGAAGACAAAA+GGG - chr7.2:51734897-51734916 MS.gene023116:intron 45.0%
GGTGATGTTCATGGAAACGT+TGG + chr7.2:51732982-51733001 None:intergenic 45.0%
GTAGTTAGTAGCACATGCGA+GGG - chr7.2:51734457-51734476 MS.gene023116:intron 45.0%
GTCTTACGTCAATGGTGTGT+GGG - chr7.2:51733223-51733242 MS.gene023116:CDS 45.0%
GTCTTGCCAATTAGCTGGAT+AGG - chr7.2:51734671-51734690 MS.gene023116:intron 45.0%
TCCCACGCAAAATGAAAGCA+TGG + chr7.2:51734276-51734295 None:intergenic 45.0%
TGGGCCGAAAAGAAGACAAA+AGG - chr7.2:51734896-51734915 MS.gene023116:intron 45.0%
TGTAGTTAGTAGCACATGCG+AGG - chr7.2:51734456-51734475 MS.gene023116:intron 45.0%
TGTCTTACGTCAATGGTGTG+TGG - chr7.2:51733222-51733241 MS.gene023116:CDS 45.0%
TTTCTCCAGTCTGAATCCAC+TGG - chr7.2:51733128-51733147 MS.gene023116:CDS 45.0%
! AGTGGATTCAGACTGGAGAA+AGG + chr7.2:51733129-51733148 None:intergenic 45.0%
! ATGGTGATGCAGGATCTCAT+CGG - chr7.2:51732936-51732955 MS.gene023116:CDS 45.0%
! CCTACTTTGACTTCTTCACG+AGG + chr7.2:51735274-51735293 None:intergenic 45.0%
! CTTGTTTCTTCTGTGCTCTC+CGG - chr7.2:51733176-51733195 MS.gene023116:CDS 45.0%
! TTGTTTCTTCTGTGCTCTCC+GGG - chr7.2:51733177-51733196 MS.gene023116:CDS 45.0%
!! GACAACCCATCTTTTTCGTC+AGG + chr7.2:51735199-51735218 None:intergenic 45.0%
!!! TTGTTTTTGAGTGGGACCCT+CGG + chr7.2:51733099-51733118 None:intergenic 45.0%
!! ATTATTATAGAAATATAATA+TGG - chr7.2:51733534-51733553 MS.gene023116:CDS 5.0%
CGGCTACAAAGTCGATTGGA+GGG + chr7.2:51735549-51735568 None:intergenic 50.0%
GGTAGCGATCATACTGAGCA+CGG + chr7.2:51733072-51733091 None:intergenic 50.0%
GGTCAGTTCACAGCTTAACG+AGG - chr7.2:51734945-51734964 MS.gene023116:intron 50.0%
GTGCTCAGTATGATCGCTAC+CGG - chr7.2:51733071-51733090 MS.gene023116:CDS 50.0%
TCGGCTACAAAGTCGATTGG+AGG + chr7.2:51735550-51735569 None:intergenic 50.0%
TGCTCAGTATGATCGCTACC+GGG - chr7.2:51733072-51733091 MS.gene023116:CDS 50.0%
TGGTCGGCTACAAAGTCGAT+TGG + chr7.2:51735553-51735572 None:intergenic 50.0%
TGTTTCTTCTGTGCTCTCCG+GGG - chr7.2:51733178-51733197 MS.gene023116:CDS 50.0%
! AGCACGGTGTTGAGCGATAA+TGG + chr7.2:51733056-51733075 None:intergenic 50.0%
! CGGAGAGCACAGAAGAAACA+AGG + chr7.2:51733178-51733197 None:intergenic 50.0%
! GATCACCAGTGGATTCAGAC+TGG + chr7.2:51733136-51733155 None:intergenic 50.0%
AAGCTGTGAACTGACCCGCA+TGG + chr7.2:51734941-51734960 None:intergenic 55.0%
AAGTCGATTGGAGGGAGCAG+AGG + chr7.2:51735541-51735560 None:intergenic 55.0%
ACGCGTGCATGCCAAGCTAA+CGG + chr7.2:51735503-51735522 None:intergenic 55.0%
AGTCGATTGGAGGGAGCAGA+GGG + chr7.2:51735540-51735559 None:intergenic 55.0%
TGCAGCAGTGACCGTTAGCT+TGG - chr7.2:51735489-51735508 MS.gene023116:CDS 55.0%
ATGATCGCTACCGGGTCCGA+GGG - chr7.2:51733080-51733099 MS.gene023116:CDS 60.0%
GCATGCACGCGTTCTCGGTA+CGG - chr7.2:51735511-51735530 MS.gene023116:CDS 60.0%
GCTTGGCATGCACGCGTTCT+CGG - chr7.2:51735506-51735525 MS.gene023116:CDS 60.0%
GTCGATTGGAGGGAGCAGAG+GGG + chr7.2:51735539-51735558 None:intergenic 60.0%
TATGATCGCTACCGGGTCCG+AGG - chr7.2:51733079-51733098 MS.gene023116:CDS 60.0%
TTGAGTGGGACCCTCGGACC+CGG + chr7.2:51733093-51733112 None:intergenic 65.0%
AGGGCCACTAGTGCGAGCCC+CGG + chr7.2:51733198-51733217 None:intergenic 70.0%
CTCTCCGGGGCTCGCACTAG+TGG - chr7.2:51733191-51733210 MS.gene023116:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 51732936 51735654 51732936 ID=MS.gene023116
chr7.2 mRNA 51732936 51735654 51732936 ID=MS.gene023116.t1;Parent=MS.gene023116
chr7.2 exon 51735253 51735654 51735253 ID=MS.gene023116.t1.exon1;Parent=MS.gene023116.t1
chr7.2 CDS 51735253 51735654 51735253 ID=cds.MS.gene023116.t1;Parent=MS.gene023116.t1
chr7.2 exon 51732936 51733724 51732936 ID=MS.gene023116.t1.exon2;Parent=MS.gene023116.t1
chr7.2 CDS 51732936 51733724 51732936 ID=cds.MS.gene023116.t1;Parent=MS.gene023116.t1
Gene Sequence

>MS.gene023116

ATGGTGATGCAGGATCTCATCGGAAAATCATTCACAAACCTAACCAACGTTTCCATGAACATCACCAAACACTTGTTATCCAATCAAAATCTCAAAGGAAAGAACGTTGTGTTTTCACCATTATCGCTCAACACCGTGCTCAGTATGATCGCTACCGGGTCCGAGGGTCCCACTCAAAAACAACTTCTCTCCTTTCTCCAGTCTGAATCCACTGGTGATCTCAAATCCTTATGCTCTCACCTTGTTTCTTCTGTGCTCTCCGGGGCTCGCACTAGTGGCCCTTGCTTGTCTTACGTCAATGGTGTGTGGGTTGAACAGACAATTCCTCTTCAACCTTCCTTCAAACAACTTATGACTACTGATTTCAAAGCTGCTTTTGCTGCAGTTGATTTCGTCAACAAGGTACTCATTCTTTTATTTGTTGTCACAAGTTAGGGTTTGAAGTTTAGTGTTATCATATTTTATTTTTTTAGTAGAGGAAATGATAAGAAACTCACACACAACTTAAGTGTTAGCGTGGTGTCTGCGTGTCTGTGACGTGCTGTTTTGTGTCCGTTTTTGTGCTGTCTTTCATAGGTGTTGAAACAATTATTTATGAATTATTATAGAAATATAATATGGTCAATTGTTATTAAAACACAAATCATCGATGAATAGTCTGATTGTTATTTTTGAACAGACCATGATAGGTTGATCCATCATGTTAAATCTAACGAGTTCAATATGCTCATTCTATTAAAATAATGTTAAATCTAACCTGTTCAATATGCTCAATATGTAGGTCTGATTGTTACCGACTTACAAACTTTGTGTTGAAGATTTTAATCCTCTTTCTCAGTTGCTTGATTAATTGGTTAAAGAGTGACCTAAATATCAATATGCTCATTCTATTAAAATAATAGGAAATGCTAACTTGTGCCCTTAGGACACATATTAAGATACAAAAGAATTTTTGCATTGAAAATTGTGCCAATTTATTTCTCAAAAGATTGAAATTTAAATTTTCTCAATAAATACTTCTTTTTTAGAAACCTTAACATGTGCTATTAGGGCACAAGTTAACATGGCCCTAAAATAAACTGTTACCAATAATGTCGGTTAGTACTATTTTTTTTCATAGCCATATTGAGCTTAAACCCATAGTACAATTACATACAAGTGTGCCTTTAAAGCACAATAATGGACTGATCTACCTATTAACATTACAATCCAATCATGTTTCTCCCTTACCAATTTCTAGATCAATCCTTTTACATATAACTTTGTTTCCAAACAGAAAAATTTAAGTTTTACAATTCCATATACCAAAAAGAATGCAGGTTCAGACTTCACCCTTTCCATGCTTTCATTTTGCGTGGGACATAAGTTAGTTTTCAGTGTTGGATCAATAAACCTAAGTGAGATATTATTGATCCAATTGTGAAAAACAAACTTGTGTATATATAGTGCAAGGCTATCTTGTGCACATTAGAAAAAATCAATAATGTGACTTTGGAATGATTTATCACTTGTTTGAAAACTGTAGTTAGTAGCACATGCGAGGGAGTGACTTTAGTATTAATGTAATATGAATTGATTTTTTATTTTGAACATACAAACTTGCTACTGTCTATAAAATATGACAAGGATAATTAGGGCATGTAATTGGTATAACCATTTTCTGAGACATTTAACCTTGGACTCATTTTGAATACAATCTCGTCATCAAACTCTCTAGCGCTAAAGATTACCTAATGTCTTGCCAATTAGCTGGATAGGTTTATTTTGCAACTCTGTTTCACCTAACTCTCTCCATATGTGGTGTATGGAAGCAACAAAATCAATGCGAAAAATATCAACAAAATGTTTAATCTTCTGTTATAATGCGCATGAAAAAATTCAAATGATTTATTTTAACATGGTTAATTTTACAATTGATACTGATTTGAAGGCTGATGAAGCGAGAGAAGAAGTGAATTTATGGGCCGAAAAGAAGACAAAAGGGCTTATTCAAGATCTTCTTCCATGCGGGTCAGTTCACAGCTTAACGAGGCTAATCTTTGCAAATGCACTATACTTCAAAGGAGTGTGGGAACAACAGTTTGATACTTTCAAAACAAAGGACTATGATTTTGACCTTCTCAATGGCAAGTCAGTAAAGGTCCCCTTTATGACCAGCAAGAATGATCAGTTTATCAGTTCTTCTGATGGTTTCAAAGTCCTTGGTCTTCCTTATAAACAAGGCAAAGATGGCCGTGCGTTCTCTATTTACATTTTTCTTCCTGACGAAAAAGATGGGTTGTCAGCTTTGATTGATAAAGTAGCTTCGGATTCTGAGTTTTTGGAACAGAAACTTCCTCGTGAAGAAGTCAAAGTAGGCAAGTTCAGGATTCCAAGATTCAATATTTCCTTTGAGATTGAAGCTTCTGAGTTGCTAAAGAAATTAGGATTGGCTTTACCTTTTTCTATGGGAGGTTTGACAAAAATGGTGGACTCTCCTATAAGTCAAGAACTTTATGTTTCCGGCATATTTCAGAAGTCTTTCATTGAAGTAAACGAAGAAGGTACAAAAGCTGCAGCAGTGACCGTTAGCTTGGCATGCACGCGTTCTCGGTACGGTTCCCCTCTGCTCCCTCCAATCGACTTTGTAGCCGACCACCCTTTTTTGTTTCTGATCAGAGAAGAGTTTAGTGGAACCATACTCTTTGTTGGAAAGGTTGTCAATCCTCTTGATGGGTGA

Protein sequence

>MS.gene023116.t1

MVMQDLIGKSFTNLTNVSMNITKHLLSNQNLKGKNVVFSPLSLNTVLSMIATGSEGPTQKQLLSFLQSESTGDLKSLCSHLVSSVLSGARTSGPCLSYVNGVWVEQTIPLQPSFKQLMTTDFKAAFAAVDFVNKADEAREEVNLWAEKKTKGLIQDLLPCGSVHSLTRLIFANALYFKGVWEQQFDTFKTKDYDFDLLNGKSVKVPFMTSKNDQFISSSDGFKVLGLPYKQGKDGRAFSIYIFLPDEKDGLSALIDKVASDSEFLEQKLPREEVKVGKFRIPRFNISFEIEASELLKKLGLALPFSMGGLTKMVDSPISQELYVSGIFQKSFIEVNEEGTKAAAVTVSLACTRSRYGSPLLPPIDFVADHPFLFLIREEFSGTILFVGKVVNPLDG