Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023356.t1 | XP_013446511.1 | 72.9 | 546 | 67 | 6 | 1 | 473 | 1 | 538 | 2.80E-206 | 728 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023356.t1 | Q9FXD6 | 38.8 | 528 | 197 | 19 | 26 | 466 | 8 | 496 | 2.1e-61 | 238.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023356.t1 | A0A072TUL7 | 72.9 | 546 | 67 | 6 | 1 | 473 | 1 | 538 | 2.0e-206 | 728.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene023356.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023356 | MS.gene39123 | PPI |
| MS.gene023356 | MS.gene014035 | PPI |
| MS.gene023356 | MS.gene017790 | PPI |
| MS.gene023356 | MS.gene38806 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023356.t1 | MTR_8g079940 | 73.260 | 546 | 65 | 8 | 1 | 473 | 1 | 538 | 0.0 | 760 |
| MS.gene023356.t1 | MTR_3g086100 | 51.313 | 571 | 159 | 13 | 12 | 473 | 1 | 561 | 7.94e-165 | 477 |
| MS.gene023356.t1 | MTR_3g086100 | 52.104 | 499 | 144 | 11 | 61 | 473 | 1 | 490 | 9.59e-148 | 431 |
| MS.gene023356.t1 | MTR_1g032570 | 43.123 | 269 | 79 | 6 | 25 | 219 | 11 | 279 | 7.42e-52 | 185 |
| MS.gene023356.t1 | MTR_4g121020 | 44.788 | 259 | 68 | 6 | 23 | 207 | 29 | 286 | 3.31e-51 | 184 |
| MS.gene023356.t1 | MTR_4g121020 | 44.788 | 259 | 68 | 6 | 23 | 207 | 29 | 286 | 3.39e-51 | 184 |
| MS.gene023356.t1 | MTR_2g034960 | 43.028 | 251 | 74 | 6 | 23 | 205 | 27 | 276 | 3.30e-49 | 178 |
| MS.gene023356.t1 | MTR_3g106220 | 40.909 | 264 | 73 | 6 | 23 | 207 | 6 | 265 | 8.54e-45 | 166 |
| MS.gene023356.t1 | MTR_1g013170 | 40.945 | 254 | 79 | 6 | 23 | 205 | 3 | 256 | 9.72e-45 | 164 |
| MS.gene023356.t1 | MTR_1g032570 | 46.190 | 210 | 62 | 4 | 61 | 219 | 1 | 210 | 1.56e-44 | 164 |
| MS.gene023356.t1 | MTR_7g117705 | 39.474 | 266 | 88 | 6 | 23 | 216 | 3 | 267 | 1.21e-42 | 157 |
| MS.gene023356.t1 | MTR_4g131580 | 40.239 | 251 | 74 | 6 | 23 | 201 | 15 | 261 | 5.58e-41 | 155 |
| MS.gene023356.t1 | MTR_2g450070 | 36.508 | 315 | 93 | 9 | 22 | 229 | 15 | 329 | 1.06e-40 | 155 |
| MS.gene023356.t1 | MTR_2g450070 | 36.508 | 315 | 93 | 9 | 22 | 229 | 15 | 329 | 1.44e-40 | 154 |
| MS.gene023356.t1 | MTR_3g102600 | 40.417 | 240 | 80 | 7 | 23 | 229 | 6 | 215 | 1.84e-40 | 145 |
| MS.gene023356.t1 | MTR_1g013180 | 41.057 | 246 | 74 | 5 | 23 | 197 | 154 | 399 | 2.36e-40 | 154 |
| MS.gene023356.t1 | MTR_4g131600 | 38.400 | 250 | 80 | 4 | 23 | 202 | 18 | 263 | 4.28e-40 | 152 |
| MS.gene023356.t1 | MTR_3g102600 | 46.111 | 180 | 59 | 5 | 59 | 229 | 16 | 166 | 2.71e-39 | 140 |
| MS.gene023356.t1 | MTR_4g131570 | 38.492 | 252 | 76 | 6 | 25 | 201 | 17 | 264 | 4.19e-38 | 147 |
| MS.gene023356.t1 | MTR_3g102600 | 41.294 | 201 | 63 | 5 | 23 | 191 | 6 | 183 | 2.19e-35 | 130 |
| MS.gene023356.t1 | MTR_3g102600 | 49.286 | 140 | 41 | 3 | 60 | 191 | 17 | 134 | 8.48e-33 | 121 |
| MS.gene023356.t1 | MTR_4g021790 | 34.862 | 218 | 97 | 5 | 24 | 197 | 9 | 225 | 7.46e-28 | 112 |
| MS.gene023356.t1 | MTR_4g021760 | 34.914 | 232 | 103 | 8 | 24 | 212 | 10 | 236 | 8.06e-28 | 113 |
| MS.gene023356.t1 | MTR_4g121020 | 40.113 | 177 | 56 | 4 | 81 | 207 | 6 | 182 | 1.73e-26 | 113 |
| MS.gene023356.t1 | MTR_4g021845 | 33.014 | 209 | 97 | 5 | 24 | 189 | 9 | 217 | 5.05e-25 | 103 |
| MS.gene023356.t1 | MTR_0450s0040 | 36.364 | 198 | 97 | 6 | 64 | 234 | 66 | 261 | 1.88e-24 | 104 |
| MS.gene023356.t1 | MTR_3g102590 | 38.813 | 219 | 90 | 7 | 23 | 208 | 6 | 213 | 2.34e-24 | 101 |
| MS.gene023356.t1 | MTR_4g021855 | 29.954 | 217 | 109 | 4 | 24 | 197 | 9 | 225 | 3.38e-24 | 102 |
| MS.gene023356.t1 | MTR_1g013160 | 56.579 | 76 | 30 | 1 | 64 | 136 | 1 | 76 | 5.17e-22 | 92.8 |
| MS.gene023356.t1 | MTR_8g105600 | 29.032 | 248 | 111 | 6 | 23 | 206 | 7 | 253 | 6.36e-22 | 99.4 |
| MS.gene023356.t1 | MTR_6g045327 | 34.444 | 180 | 90 | 7 | 38 | 195 | 54 | 227 | 1.61e-20 | 93.6 |
| MS.gene023356.t1 | MTR_3g102590 | 38.889 | 198 | 79 | 6 | 23 | 189 | 6 | 192 | 1.65e-20 | 89.7 |
| MS.gene023356.t1 | MTR_7g026400 | 31.606 | 193 | 100 | 3 | 64 | 224 | 49 | 241 | 6.43e-20 | 93.2 |
| MS.gene023356.t1 | MTR_8g093040 | 29.747 | 158 | 84 | 4 | 61 | 202 | 73 | 219 | 3.30e-14 | 73.2 |
| MS.gene023356.t1 | MTR_5g055260 | 27.404 | 208 | 99 | 9 | 24 | 197 | 9 | 198 | 9.76e-14 | 71.6 |
| MS.gene023356.t1 | MTR_4g023980 | 30.508 | 118 | 68 | 2 | 61 | 164 | 48 | 165 | 5.75e-13 | 67.4 |
| MS.gene023356.t1 | MTR_4g064730 | 52.778 | 72 | 26 | 2 | 145 | 208 | 129 | 200 | 1.02e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023356.t1 | AT1G67710 | 39.679 | 499 | 178 | 18 | 26 | 438 | 8 | 469 | 4.73e-76 | 248 |
| MS.gene023356.t1 | AT1G67710 | 39.636 | 439 | 169 | 16 | 61 | 438 | 1 | 404 | 1.32e-66 | 221 |
| MS.gene023356.t1 | AT1G67710 | 36.516 | 419 | 170 | 16 | 81 | 438 | 12 | 395 | 4.22e-50 | 177 |
| MS.gene023356.t1 | AT2G25180 | 42.292 | 253 | 75 | 6 | 22 | 205 | 10 | 260 | 2.16e-44 | 164 |
| MS.gene023356.t1 | AT4G31920 | 37.748 | 302 | 104 | 9 | 22 | 243 | 10 | 307 | 1.28e-43 | 161 |
| MS.gene023356.t1 | AT2G01760 | 40.000 | 265 | 77 | 8 | 20 | 204 | 2 | 264 | 2.71e-43 | 157 |
| MS.gene023356.t1 | AT2G01760 | 36.860 | 293 | 75 | 9 | 20 | 204 | 2 | 292 | 1.72e-38 | 145 |
| MS.gene023356.t1 | AT2G01760 | 42.211 | 199 | 60 | 6 | 61 | 204 | 1 | 199 | 1.28e-36 | 137 |
| MS.gene023356.t1 | AT5G58080 | 39.130 | 253 | 83 | 8 | 23 | 207 | 12 | 261 | 2.97e-34 | 136 |
| MS.gene023356.t1 | AT3G16857 | 54.098 | 122 | 31 | 2 | 22 | 119 | 30 | 150 | 5.22e-31 | 127 |
| MS.gene023356.t1 | AT3G16857 | 40.945 | 127 | 62 | 4 | 116 | 233 | 207 | 329 | 3.08e-16 | 82.0 |
| MS.gene023356.t1 | AT3G16857 | 54.098 | 122 | 31 | 2 | 22 | 119 | 30 | 150 | 5.95e-31 | 127 |
| MS.gene023356.t1 | AT3G16857 | 40.945 | 127 | 62 | 4 | 116 | 233 | 207 | 329 | 2.99e-16 | 82.0 |
| MS.gene023356.t1 | AT3G16857 | 73.770 | 61 | 16 | 0 | 59 | 119 | 20 | 80 | 8.23e-24 | 105 |
| MS.gene023356.t1 | AT3G16857 | 40.945 | 127 | 62 | 4 | 116 | 233 | 137 | 259 | 2.57e-16 | 82.0 |
| MS.gene023356.t1 | AT5G49240 | 31.915 | 235 | 90 | 4 | 25 | 189 | 38 | 272 | 9.73e-22 | 95.5 |
| MS.gene023356.t1 | AT1G49190 | 26.190 | 252 | 112 | 7 | 22 | 199 | 27 | 278 | 6.69e-15 | 77.0 |
| MS.gene023356.t1 | AT1G49190 | 31.148 | 122 | 61 | 2 | 22 | 120 | 27 | 148 | 1.89e-12 | 70.1 |
| MS.gene023356.t1 | AT3G46640 | 50.000 | 70 | 27 | 2 | 137 | 199 | 135 | 203 | 1.23e-11 | 66.2 |
| MS.gene023356.t1 | AT3G46640 | 50.000 | 70 | 27 | 2 | 137 | 199 | 135 | 203 | 1.23e-11 | 66.2 |
| MS.gene023356.t1 | AT3G46640 | 53.226 | 62 | 22 | 1 | 145 | 199 | 142 | 203 | 1.95e-11 | 65.5 |
Find 76 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAACTCTTTCTTATCTT+TGG | 0.198401 | 4.4:+16834038 | None:intergenic |
| TCTTGGTTGCATTTATGATA+TGG | 0.215616 | 4.4:-16833646 | MS.gene023356:CDS |
| TGTTGCTGTGTAACATTTAA+TGG | 0.220612 | 4.4:+16833861 | None:intergenic |
| TTGAAAGTGATTGGTCAATT+TGG | 0.229447 | 4.4:+16833835 | None:intergenic |
| ATCATTTGAGATGAGGCTTT+TGG | 0.254966 | 4.4:+16833725 | None:intergenic |
| GAACACACTTGTACAATTAA+AGG | 0.258335 | 4.4:-16833901 | MS.gene023356:CDS |
| ATTATTTGCTTAAGCCTATA+AGG | 0.266042 | 4.4:-16835105 | MS.gene023356:CDS |
| CGCAATTCTTTCATCCTTAT+AGG | 0.272142 | 4.4:+16835091 | None:intergenic |
| TACCCAAAAGTAAGTTTCTT+TGG | 0.274466 | 4.4:+16833616 | None:intergenic |
| CTACCAAAGAAACTTACTTT+TGG | 0.276715 | 4.4:-16833619 | MS.gene023356:CDS |
| TGGAATTAATTGAAAGTGAT+TGG | 0.324987 | 4.4:+16833826 | None:intergenic |
| TTTGAAGTTAAAATGATATC+AGG | 0.326062 | 4.4:+16833696 | None:intergenic |
| AAGTTCGATCTACGAGTTCT+TGG | 0.327718 | 4.4:+16834889 | None:intergenic |
| GAAGGTGCAATCGATAGTTT+TGG | 0.347432 | 4.4:-16834143 | MS.gene023356:CDS |
| ATCTGCTGAAGCATACAAAT+TGG | 0.351333 | 4.4:+16833458 | None:intergenic |
| TGAGTCAGCTTCCACACCTT+TGG | 0.366813 | 4.4:-16833592 | MS.gene023356:CDS |
| AAATGTTGCTAGTCACTTGC+AGG | 0.372643 | 4.4:-16834547 | MS.gene023356:intron |
| TAAAGAAAGCTAGAGTAGTT+TGG | 0.378977 | 4.4:-16834863 | MS.gene023356:CDS |
| AATGTAATCATTCTTGTAAT+CGG | 0.392849 | 4.4:+16833797 | None:intergenic |
| TTACTTCTGATTCCAGAGAT+TGG | 0.407149 | 4.4:+16834003 | None:intergenic |
| AAAACACCAAGATTTAATCT+TGG | 0.410977 | 4.4:-16833663 | MS.gene023356:CDS |
| CCATACCAACACAGTACTCT+TGG | 0.432925 | 4.4:-16833959 | MS.gene023356:CDS |
| ATTCTTGTAATCGGAGGGAT+TGG | 0.437838 | 4.4:+16833806 | None:intergenic |
| AGCTTGAAACCATCCATGTC+AGG | 0.458164 | 4.4:+16835441 | None:intergenic |
| GGTAGGTCTTAACCAATCTC+TGG | 0.459702 | 4.4:-16834015 | MS.gene023356:CDS |
| CATATTCACCTTGTAACAAA+AGG | 0.468727 | 4.4:+16833553 | None:intergenic |
| ATGCAACCAAGATTAAATCT+TGG | 0.480002 | 4.4:+16833657 | None:intergenic |
| TGAAAGAATTGCGAAACATA+TGG | 0.480046 | 4.4:-16835081 | MS.gene023356:intron |
| GATTTACCTTCAAAAGATCC+AGG | 0.483223 | 4.4:-16834206 | MS.gene023356:CDS |
| GAAATGAACTTAATGAAGAA+AGG | 0.486083 | 4.4:-16834938 | MS.gene023356:CDS |
| TTCAAGCTTCTTGAACATGT+TGG | 0.489231 | 4.4:-16835426 | MS.gene023356:CDS |
| TTGAGAAAGCTTAAACATCC+TGG | 0.491396 | 4.4:+16834188 | None:intergenic |
| CAAACATCATGGTACACAAC+AGG | 0.500098 | 4.4:-16836219 | None:intergenic |
| TATGCAGTGATGTCTGTTGA+TGG | 0.505268 | 4.4:-16835172 | MS.gene023356:intron |
| AGCTTCCACACCTTTGGACG+AGG | 0.506847 | 4.4:-16833586 | MS.gene023356:CDS |
| CATTAGTCCTGTGAATTCAT+CGG | 0.523463 | 4.4:-16833778 | MS.gene023356:CDS |
| TGAACATGTTGGACTTGAGA+TGG | 0.525184 | 4.4:-16835415 | MS.gene023356:CDS |
| AAAATTCAAATGGATACTAC+AGG | 0.527020 | 4.4:-16834101 | MS.gene023356:CDS |
| CAAATGGATACTACAGGTCA+TGG | 0.528328 | 4.4:-16834095 | MS.gene023356:CDS |
| GAGATTGATCATTTGAGATG+AGG | 0.529752 | 4.4:+16833718 | None:intergenic |
| ACGAGAACTCGTAGACCAGC+TGG | 0.529891 | 4.4:+16836136 | None:intergenic |
| GTGTAACATTTAATGGCAAA+TGG | 0.530650 | 4.4:+16833868 | None:intergenic |
| GGAACTTCAGCAATAAACCT+TGG | 0.534763 | 4.4:+16833483 | None:intergenic |
| TAAAAGAACTTACTAATGAC+AGG | 0.538868 | 4.4:+16835387 | None:intergenic |
| GTGTTCTGTTCTTCTTCGAG+TGG | 0.552522 | 4.4:+16833918 | None:intergenic |
| GCAACCTACTCAAGTATAGC+CGG | 0.557803 | 4.4:+16834276 | None:intergenic |
| TAATCATTCTTGTAATCGGA+GGG | 0.562863 | 4.4:+16833801 | None:intergenic |
| TGGTGGAGTCAAATGCTGTA+TGG | 0.564365 | 4.4:+16833979 | None:intergenic |
| AAAGCATCAAGGTGTGGAGA+AGG | 0.568756 | 4.4:+16836160 | None:intergenic |
| CCAAGAGTACTGTGTTGGTA+TGG | 0.569363 | 4.4:+16833959 | None:intergenic |
| AATGATCAGAAATTGTCCTC+AGG | 0.572148 | 4.4:-16834245 | MS.gene023356:CDS |
| GCTGAAGCATACAAATTGGT+AGG | 0.582128 | 4.4:+16833462 | None:intergenic |
| TTGTGATTGATGATCTAACT+TGG | 0.582570 | 4.4:-16836114 | MS.gene023356:CDS |
| TCATTCCAAGAGTACTGTGT+TGG | 0.583367 | 4.4:+16833954 | None:intergenic |
| TGTCAGAGTATTATGATCCA+AGG | 0.585355 | 4.4:-16833500 | MS.gene023356:CDS |
| CTGTTGATGGAGAAACAAGC+AGG | 0.593651 | 4.4:-16835159 | MS.gene023356:CDS |
| GTGATGAAAGGTGTTCAACA+TGG | 0.594525 | 4.4:-16835136 | MS.gene023356:CDS |
| GTAATCATTCTTGTAATCGG+AGG | 0.596210 | 4.4:+16833800 | None:intergenic |
| ATAAGAAAGAGTTCAGAGGT+AGG | 0.597933 | 4.4:-16834032 | MS.gene023356:CDS |
| AAGTTTAAGTCCTCGTCCAA+AGG | 0.599539 | 4.4:+16833576 | None:intergenic |
| AGAGTACTGTGTTGGTATGG+TGG | 0.600173 | 4.4:+16833962 | None:intergenic |
| GACCAGCTGGAAAAGCATCA+AGG | 0.602271 | 4.4:+16836149 | None:intergenic |
| GCGATGTAACATGCCTGACA+TGG | 0.603084 | 4.4:-16835454 | MS.gene023356:CDS |
| AGCTAGAGTAGTTTGGTCTG+TGG | 0.615227 | 4.4:-16834856 | MS.gene023356:CDS |
| GAAGACACCGATGAATTCAC+AGG | 0.619719 | 4.4:+16833771 | None:intergenic |
| AATACCGGCTATACTTGAGT+AGG | 0.620491 | 4.4:-16834280 | MS.gene023356:CDS |
| TAAGTCCTCGTCCAAAGGTG+TGG | 0.621176 | 4.4:+16833581 | None:intergenic |
| AAAGATAAGAAAGAGTTCAG+AGG | 0.625719 | 4.4:-16834036 | MS.gene023356:CDS |
| GAAACAAGCAGGGTGATGAA+AGG | 0.627020 | 4.4:-16835148 | MS.gene023356:CDS |
| GCTGGAAAAGCATCAAGGTG+TGG | 0.628160 | 4.4:+16836154 | None:intergenic |
| GTCTCTTGTCTATGACAACA+TGG | 0.628850 | 4.4:-16836197 | MS.gene023356:CDS |
| TGAATGCTTTATTCTACCTG+AGG | 0.641744 | 4.4:+16834229 | None:intergenic |
| TAGATTTGATGAATGTTCCG+TGG | 0.652142 | 4.4:-16834581 | MS.gene023356:CDS |
| TTCAGCAAGCAACAAAACGA+AGG | 0.652173 | 4.4:-16834161 | MS.gene023356:CDS |
| TGTAACATGCCTGACATGGA+TGG | 0.706246 | 4.4:-16835450 | MS.gene023356:CDS |
| TGTTGATGGAGAAACAAGCA+GGG | 0.723682 | 4.4:-16835158 | MS.gene023356:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTAGTATAAATT+AGG | + | chr4.4:16834021-16834040 | None:intergenic | 10.0% |
| !!! | TGATAAAAATAATTTCTTTT+TGG | - | chr4.4:16835033-16835052 | MS.gene023356:intron | 10.0% |
| !!! | TTTTCTTTGAAAAAAAAAAA+AGG | + | chr4.4:16833787-16833806 | None:intergenic | 10.0% |
| !! | TTGAAAAAAAAAAAAGGAAT+TGG | + | chr4.4:16833781-16833800 | None:intergenic | 15.0% |
| !!! | AAGAGCAAAATTTTATTATT+AGG | + | chr4.4:16835356-16835375 | None:intergenic | 15.0% |
| !!! | TCTTTTAACTTAATTAACAA+AGG | - | chr4.4:16833888-16833907 | MS.gene023356:CDS | 15.0% |
| !!! | TTTCTTAAATTTGCAAATTT+TGG | - | chr4.4:16834054-16834073 | MS.gene023356:CDS | 15.0% |
| !!! | TTTTTTTTAGCATTTTTTCA+AGG | + | chr4.4:16833580-16833599 | None:intergenic | 15.0% |
| !! | AATGTAATCATTCTTGTAAT+CGG | + | chr4.4:16835866-16835885 | None:intergenic | 20.0% |
| !!! | ATCAAATCTAGAATTTTCTT+GGG | + | chr4.4:16835069-16835088 | None:intergenic | 20.0% |
| !!! | TAAACTTTTAACTTTAGTAG+AGG | + | chr4.4:16835160-16835179 | None:intergenic | 20.0% |
| !!! | TTTGAAGTTAAAATGATATC+AGG | + | chr4.4:16835967-16835986 | None:intergenic | 20.0% |
| ! | AAAACACCAAGATTTAATCT+TGG | - | chr4.4:16835997-16836016 | MS.gene023356:intron | 25.0% |
| ! | AAAATTCAAATGGATACTAC+AGG | - | chr4.4:16835559-16835578 | MS.gene023356:intron | 25.0% |
| ! | ATTATTTGCTTAAGCCTATA+AGG | - | chr4.4:16834555-16834574 | MS.gene023356:CDS | 25.0% |
| ! | CTTAAGAAAAAGAATACATG+AGG | - | chr4.4:16834611-16834630 | MS.gene023356:intron | 25.0% |
| ! | GAAATGAACTTAATGAAGAA+AGG | - | chr4.4:16834722-16834741 | MS.gene023356:intron | 25.0% |
| ! | TAAAAGAACTTACTAATGAC+AGG | + | chr4.4:16834276-16834295 | None:intergenic | 25.0% |
| ! | TGGAATTAATTGAAAGTGAT+TGG | + | chr4.4:16835837-16835856 | None:intergenic | 25.0% |
| ! | TGGGACATTAAAAATTCAAA+TGG | - | chr4.4:16835549-16835568 | MS.gene023356:intron | 25.0% |
| !! | CAAGTGTTGTTGTAAAATAA+TGG | + | chr4.4:16834461-16834480 | None:intergenic | 25.0% |
| !! | TAAAAAAAATGCTTTTACCG+AGG | - | chr4.4:16833591-16833610 | MS.gene023356:CDS | 25.0% |
| !! | TTAAACTTCCTTTTGTTACA+AGG | - | chr4.4:16836099-16836118 | MS.gene023356:CDS | 25.0% |
| !!! | AATATTTCTGAGATGTGTAT+TGG | + | chr4.4:16835266-16835285 | None:intergenic | 25.0% |
| !!! | ATAGTTTTGGATATTCAGAT+GGG | - | chr4.4:16835530-16835549 | MS.gene023356:intron | 25.0% |
| !!! | CATCAAATCTAGAATTTTCT+TGG | + | chr4.4:16835070-16835089 | None:intergenic | 25.0% |
| !!! | TACCAAAGAAACTTACTTTT+GGG | - | chr4.4:16836042-16836061 | MS.gene023356:intron | 25.0% |
| !!! | TGTCTTCTAGCTTTTTTTTT+CGG | + | chr4.4:16834390-16834409 | None:intergenic | 25.0% |
| !!! | TTTTGAGTTTGAAAACTTAC+AGG | - | chr4.4:16835328-16835347 | MS.gene023356:intron | 25.0% |
| AAAGATAAGAAAGAGTTCAG+AGG | - | chr4.4:16835624-16835643 | MS.gene023356:intron | 30.0% | |
| ATATATACCACTTTAGCACA+TGG | + | chr4.4:16833654-16833673 | None:intergenic | 30.0% | |
| ATGCAACCAAGATTAAATCT+TGG | + | chr4.4:16836006-16836025 | None:intergenic | 30.0% | |
| ATTAGAAGCCAACAAAAATG+TGG | + | chr4.4:16833756-16833775 | None:intergenic | 30.0% | |
| CATATTCACCTTGTAACAAA+AGG | + | chr4.4:16836110-16836129 | None:intergenic | 30.0% | |
| CTCTTACACAAAAGATATGA+TGG | + | chr4.4:16835006-16835025 | None:intergenic | 30.0% | |
| GAACACACTTGTACAATTAA+AGG | - | chr4.4:16835759-16835778 | MS.gene023356:intron | 30.0% | |
| GTACCTACTAGTAATATTCT+TGG | - | chr4.4:16834363-16834382 | MS.gene023356:intron | 30.0% | |
| GTAGATTTATTTAGTGTGCT+TGG | + | chr4.4:16834936-16834955 | None:intergenic | 30.0% | |
| GTGTAACATTTAATGGCAAA+TGG | + | chr4.4:16835795-16835814 | None:intergenic | 30.0% | |
| TAAAGAAAGCTAGAGTAGTT+TGG | - | chr4.4:16834797-16834816 | MS.gene023356:intron | 30.0% | |
| TAATCATTCTTGTAATCGGA+GGG | + | chr4.4:16835862-16835881 | None:intergenic | 30.0% | |
| TACCCAAAAGTAAGTTTCTT+TGG | + | chr4.4:16836047-16836066 | None:intergenic | 30.0% | |
| TCTGAACTCTTTCTTATCTT+TGG | + | chr4.4:16835625-16835644 | None:intergenic | 30.0% | |
| TCTTGGTTGCATTTATGATA+TGG | - | chr4.4:16836014-16836033 | MS.gene023356:intron | 30.0% | |
| TGAAAGAATTGCGAAACATA+TGG | - | chr4.4:16834579-16834598 | MS.gene023356:CDS | 30.0% | |
| TGAATGAAAGAAAGAAACCT+CGG | + | chr4.4:16833611-16833630 | None:intergenic | 30.0% | |
| TGTTGCTGTGTAACATTTAA+TGG | + | chr4.4:16835802-16835821 | None:intergenic | 30.0% | |
| TTGCATTGTACTGAACTTAT+TGG | + | chr4.4:16833706-16833725 | None:intergenic | 30.0% | |
| ! | ATTTTGCTCTTCAGAAATAC+CGG | - | chr4.4:16835365-16835384 | MS.gene023356:intron | 30.0% |
| ! | CTACCAAAGAAACTTACTTT+TGG | - | chr4.4:16836041-16836060 | MS.gene023356:intron | 30.0% |
| ! | TTGAAAGTGATTGGTCAATT+TGG | + | chr4.4:16835828-16835847 | None:intergenic | 30.0% |
| ! | TTGTGATTGATGATCTAACT+TGG | - | chr4.4:16833546-16833565 | MS.gene023356:CDS | 30.0% |
| !! | TAATTTCTTTTTGGCAGAAG+TGG | - | chr4.4:16835042-16835061 | MS.gene023356:intron | 30.0% |
| !! | TCTGATATGTTGTTTCTGTT+AGG | - | chr4.4:16835196-16835215 | MS.gene023356:intron | 30.0% |
| !!! | GATAGTTTTGGATATTCAGA+TGG | - | chr4.4:16835529-16835548 | MS.gene023356:intron | 30.0% |
| AAGAGAATTTGAAAGTCTCG+AGG | - | chr4.4:16834635-16834654 | MS.gene023356:intron | 35.0% | |
| AAGCCAACAAAAATGTGGAT+TGG | + | chr4.4:16833751-16833770 | None:intergenic | 35.0% | |
| AATGATCAGAAATTGTCCTC+AGG | - | chr4.4:16835415-16835434 | MS.gene023356:CDS | 35.0% | |
| AGAGAATTTGAAAGTCTCGA+GGG | - | chr4.4:16834636-16834655 | MS.gene023356:intron | 35.0% | |
| ATAAGAAAGAGTTCAGAGGT+AGG | - | chr4.4:16835628-16835647 | MS.gene023356:intron | 35.0% | |
| ATCTGCTGAAGCATACAAAT+TGG | + | chr4.4:16836205-16836224 | None:intergenic | 35.0% | |
| CATATGCATCTTTACTTTCG+CGG | + | chr4.4:16834174-16834193 | None:intergenic | 35.0% | |
| CATTAGTCCTGTGAATTCAT+CGG | - | chr4.4:16835882-16835901 | MS.gene023356:intron | 35.0% | |
| CGCAATTCTTTCATCCTTAT+AGG | + | chr4.4:16834572-16834591 | None:intergenic | 35.0% | |
| CTAGGATGAGATGATAATAC+TGG | - | chr4.4:16833863-16833882 | MS.gene023356:CDS | 35.0% | |
| GATTTACCTTCAAAAGATCC+AGG | - | chr4.4:16835454-16835473 | MS.gene023356:CDS | 35.0% | |
| GGACCAAGAATATTACTAGT+AGG | + | chr4.4:16834369-16834388 | None:intergenic | 35.0% | |
| GGGATTCACTTAATGAGAAA+TGG | - | chr4.4:16834656-16834675 | MS.gene023356:intron | 35.0% | |
| GTAATCATTCTTGTAATCGG+AGG | + | chr4.4:16835863-16835882 | None:intergenic | 35.0% | |
| GTTAAAGCTGTGAATCAACT+TGG | - | chr4.4:16834846-16834865 | MS.gene023356:CDS | 35.0% | |
| TAGATTTGATGAATGTTCCG+TGG | - | chr4.4:16835079-16835098 | MS.gene023356:intron | 35.0% | |
| TTACTTCTGATTCCAGAGAT+TGG | + | chr4.4:16835660-16835679 | None:intergenic | 35.0% | |
| TTCAAGCTTCTTGAACATGT+TGG | - | chr4.4:16834234-16834253 | MS.gene023356:CDS | 35.0% | |
| TTGAGAAAGCTTAAACATCC+TGG | + | chr4.4:16835475-16835494 | None:intergenic | 35.0% | |
| ! | AAACATCCTGGATCTTTTGA+AGG | + | chr4.4:16835463-16835482 | None:intergenic | 35.0% |
| ! | GAGATTGATCATTTGAGATG+AGG | + | chr4.4:16835945-16835964 | None:intergenic | 35.0% |
| ! | TCACCAATCCACATTTTTGT+TGG | - | chr4.4:16833745-16833764 | MS.gene023356:CDS | 35.0% |
| ! | TGAATGCTTTATTCTACCTG+AGG | + | chr4.4:16835434-16835453 | None:intergenic | 35.0% |
| ! | TGTCAGAGTATTATGATCCA+AGG | - | chr4.4:16836160-16836179 | MS.gene023356:CDS | 35.0% |
| ! | TTACGACTCTGTGTCTTATT+TGG | - | chr4.4:16833958-16833977 | MS.gene023356:CDS | 35.0% |
| !! | ATCATTTGAGATGAGGCTTT+TGG | + | chr4.4:16835938-16835957 | None:intergenic | 35.0% |
| !! | TATTACTAGTAGGTACTGAC+TGG | + | chr4.4:16834359-16834378 | None:intergenic | 35.0% |
| AAATGTTGCTAGTCACTTGC+AGG | - | chr4.4:16835113-16835132 | MS.gene023356:CDS | 40.0% | |
| AAGTTCGATCTACGAGTTCT+TGG | + | chr4.4:16834774-16834793 | None:intergenic | 40.0% | |
| AAGTTTAAGTCCTCGTCCAA+AGG | + | chr4.4:16836087-16836106 | None:intergenic | 40.0% | |
| ACTAACCAATAACGCTAGCT+AGG | - | chr4.4:16833845-16833864 | MS.gene023356:CDS | 40.0% | |
| AGTCTTAATAGCTGCGTGAT+GGG | - | chr4.4:16833992-16834011 | MS.gene023356:CDS | 40.0% | |
| ATTCTTGTAATCGGAGGGAT+TGG | + | chr4.4:16835857-16835876 | None:intergenic | 40.0% | |
| CAAATGGATACTACAGGTCA+TGG | - | chr4.4:16835565-16835584 | MS.gene023356:intron | 40.0% | |
| CTAGAACTAGAAGGCTAGTA+GGG | - | chr4.4:16835220-16835239 | MS.gene023356:intron | 40.0% | |
| CTCTATTGCTAAGCAACATG+TGG | + | chr4.4:16834137-16834156 | None:intergenic | 40.0% | |
| GCTGAAGCATACAAATTGGT+AGG | + | chr4.4:16836201-16836220 | None:intergenic | 40.0% | |
| GGAACTTCAGCAATAAACCT+TGG | + | chr4.4:16836180-16836199 | None:intergenic | 40.0% | |
| GTCTCTTGTCTATGACAACA+TGG | - | chr4.4:16833463-16833482 | MS.gene023356:CDS | 40.0% | |
| TAGAACTAGAAGGCTAGTAG+GGG | - | chr4.4:16835221-16835240 | MS.gene023356:intron | 40.0% | |
| TATGCAGTGATGTCTGTTGA+TGG | - | chr4.4:16834488-16834507 | MS.gene023356:intron | 40.0% | |
| TCTTCTTCCATGTGCTAAAG+TGG | - | chr4.4:16833644-16833663 | MS.gene023356:CDS | 40.0% | |
| TGAACATGTTGGACTTGAGA+TGG | - | chr4.4:16834245-16834264 | MS.gene023356:CDS | 40.0% | |
| TTCAGCAAGCAACAAAACGA+AGG | - | chr4.4:16835499-16835518 | MS.gene023356:intron | 40.0% | |
| ! | AATACCGGCTATACTTGAGT+AGG | - | chr4.4:16835380-16835399 | MS.gene023356:intron | 40.0% |
| ! | ACATTTTCTCTAGTCAGCCA+CGG | + | chr4.4:16835099-16835118 | None:intergenic | 40.0% |
| ! | CACATGTTGCTTAGCAATAG+AGG | - | chr4.4:16834135-16834154 | MS.gene023356:CDS | 40.0% |
| ! | TAGTCTTAATAGCTGCGTGA+TGG | - | chr4.4:16833991-16834010 | MS.gene023356:CDS | 40.0% |
| ! | TGTTGATGGAGAAACAAGCA+GGG | - | chr4.4:16834502-16834521 | MS.gene023356:intron | 40.0% |
| !! | GAAGGTGCAATCGATAGTTT+TGG | - | chr4.4:16835517-16835536 | MS.gene023356:intron | 40.0% |
| !! | GATGGTAACATGTTTGCTGT+AGG | - | chr4.4:16834695-16834714 | MS.gene023356:intron | 40.0% |
| !! | GTGATGAAAGGTGTTCAACA+TGG | - | chr4.4:16834524-16834543 | MS.gene023356:intron | 40.0% |
| !! | TCATTCCAAGAGTACTGTGT+TGG | + | chr4.4:16835709-16835728 | None:intergenic | 40.0% |
| ACTGGTCAGGAAAAAAGAGC+TGG | + | chr4.4:16834341-16834360 | None:intergenic | 45.0% | |
| AGCTAGAGTAGTTTGGTCTG+TGG | - | chr4.4:16834804-16834823 | MS.gene023356:intron | 45.0% | |
| AGCTTGAAACCATCCATGTC+AGG | + | chr4.4:16834222-16834241 | None:intergenic | 45.0% | |
| CCATACCAACACAGTACTCT+TGG | - | chr4.4:16835701-16835720 | MS.gene023356:intron | 45.0% | |
| CCTAGAACTAGAAGGCTAGT+AGG | - | chr4.4:16835219-16835238 | MS.gene023356:intron | 45.0% | |
| CTCATCCTAGCTAGCGTTAT+TGG | + | chr4.4:16833853-16833872 | None:intergenic | 45.0% | |
| CTGGTCAGGAAAAAAGAGCT+GGG | + | chr4.4:16834340-16834359 | None:intergenic | 45.0% | |
| CTGTTAGGCCTAGAACTAGA+AGG | - | chr4.4:16835211-16835230 | MS.gene023356:intron | 45.0% | |
| GAAACAAGCAGGGTGATGAA+AGG | - | chr4.4:16834512-16834531 | MS.gene023356:intron | 45.0% | |
| GAAGACACCGATGAATTCAC+AGG | + | chr4.4:16835892-16835911 | None:intergenic | 45.0% | |
| GCAACCTACTCAAGTATAGC+CGG | + | chr4.4:16835387-16835406 | None:intergenic | 45.0% | |
| GGATCAGATCACACTGATGA+TGG | - | chr4.4:16834677-16834696 | MS.gene023356:intron | 45.0% | |
| GGTAGGTCTTAACCAATCTC+TGG | - | chr4.4:16835645-16835664 | MS.gene023356:intron | 45.0% | |
| GTGTTCTGTTCTTCTTCGAG+TGG | + | chr4.4:16835745-16835764 | None:intergenic | 45.0% | |
| TGGTGGAGTCAAATGCTGTA+TGG | + | chr4.4:16835684-16835703 | None:intergenic | 45.0% | |
| TGTAACATGCCTGACATGGA+TGG | - | chr4.4:16834210-16834229 | MS.gene023356:CDS | 45.0% | |
| ! | AAAGCATCAAGGTGTGGAGA+AGG | + | chr4.4:16833503-16833522 | None:intergenic | 45.0% |
| ! | ATGAGGCTTTTGGACTGACT+AGG | + | chr4.4:16835928-16835947 | None:intergenic | 45.0% |
| ! | CTGTTGATGGAGAAACAAGC+AGG | - | chr4.4:16834501-16834520 | MS.gene023356:intron | 45.0% |
| ! | GCTTTTGGACTGACTAGGAA+AGG | + | chr4.4:16835923-16835942 | None:intergenic | 45.0% |
| !! | AGAGTACTGTGTTGGTATGG+TGG | + | chr4.4:16835701-16835720 | None:intergenic | 45.0% |
| !! | CCAAGAGTACTGTGTTGGTA+TGG | + | chr4.4:16835704-16835723 | None:intergenic | 45.0% |
| !! | CCTACTAGCCTTCTAGTTCT+AGG | + | chr4.4:16835222-16835241 | None:intergenic | 45.0% |
| CAGGAAAAAAGAGCTGGGAG+AGG | + | chr4.4:16834335-16834354 | None:intergenic | 50.0% | |
| GCGATGTAACATGCCTGACA+TGG | - | chr4.4:16834206-16834225 | MS.gene023356:CDS | 50.0% | |
| TAAGTCCTCGTCCAAAGGTG+TGG | + | chr4.4:16836082-16836101 | None:intergenic | 50.0% | |
| TGAGTCAGCTTCCACACCTT+TGG | - | chr4.4:16836068-16836087 | MS.gene023356:intron | 50.0% | |
| ! | CACCTTGATGCTTTTCCAGC+TGG | - | chr4.4:16833509-16833528 | MS.gene023356:CDS | 50.0% |
| !! | CTAGTAGGTACTGACTGGTC+AGG | + | chr4.4:16834354-16834373 | None:intergenic | 50.0% |
| !! | GACCAGCTGGAAAAGCATCA+AGG | + | chr4.4:16833514-16833533 | None:intergenic | 50.0% |
| !! | GCTGGAAAAGCATCAAGGTG+TGG | + | chr4.4:16833509-16833528 | None:intergenic | 50.0% |
| ACGAGAACTCGTAGACCAGC+TGG | + | chr4.4:16833527-16833546 | None:intergenic | 55.0% | |
| AGCTTCCACACCTTTGGACG+AGG | - | chr4.4:16836074-16836093 | MS.gene023356:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 16833449 | 16836233 | 16833449 | ID=MS.gene023356 |
| chr4.4 | mRNA | 16833449 | 16836233 | 16833449 | ID=MS.gene023356.t1;Parent=MS.gene023356 |
| chr4.4 | exon | 16836070 | 16836233 | 16836070 | ID=MS.gene023356.t1.exon1;Parent=MS.gene023356.t1 |
| chr4.4 | CDS | 16836070 | 16836233 | 16836070 | ID=cds.MS.gene023356.t1;Parent=MS.gene023356.t1 |
| chr4.4 | exon | 16835400 | 16835482 | 16835400 | ID=MS.gene023356.t1.exon2;Parent=MS.gene023356.t1 |
| chr4.4 | CDS | 16835400 | 16835482 | 16835400 | ID=cds.MS.gene023356.t1;Parent=MS.gene023356.t1 |
| chr4.4 | exon | 16835082 | 16835187 | 16835082 | ID=MS.gene023356.t1.exon3;Parent=MS.gene023356.t1 |
| chr4.4 | CDS | 16835082 | 16835187 | 16835082 | ID=cds.MS.gene023356.t1;Parent=MS.gene023356.t1 |
| chr4.4 | exon | 16834828 | 16834965 | 16834828 | ID=MS.gene023356.t1.exon4;Parent=MS.gene023356.t1 |
| chr4.4 | CDS | 16834828 | 16834965 | 16834828 | ID=cds.MS.gene023356.t1;Parent=MS.gene023356.t1 |
| chr4.4 | exon | 16834548 | 16834623 | 16834548 | ID=MS.gene023356.t1.exon5;Parent=MS.gene023356.t1 |
| chr4.4 | CDS | 16834548 | 16834623 | 16834548 | ID=cds.MS.gene023356.t1;Parent=MS.gene023356.t1 |
| chr4.4 | exon | 16833449 | 16834303 | 16833449 | ID=MS.gene023356.t1.exon6;Parent=MS.gene023356.t1 |
| chr4.4 | CDS | 16833449 | 16834303 | 16833449 | ID=cds.MS.gene023356.t1;Parent=MS.gene023356.t1 |
| Gene Sequence |
| Protein sequence |
