AlfalfaGEDB | MS.gene023437

M. sativa cultivar XinJiangDaYe / MS.gene023437

KEGG: K14489
GO: GO:0000155 GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0006139 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007165 GO:0008150 GO:0008152 GO:0009116 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0034641 GO:0035556 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0050789 GO:0050794 GO:0055086 GO:0065007 GO:0071704 GO:0140096 GO:0140299 GO:1901135 GO:1901360 GO:1901564 GO:1901657
PFAM: PF00072.27 PF00512.28 PF02518.29 PF03924.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023437.t1	XP_013446582.1	98.2	970	17	0	1	970	1	970	0.00E+00	1880.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023437.t1	Q9C5U1	68.4	982	285	7	1	969	61	1030	0.0e+00	1301.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023437.t1	A0A072TSW4	98.2	970	17	0	1	970	1	970	0.0e+00	1880.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene023437.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene023437	MS.gene059778	PPI
MS.gene023437	MS.gene58351	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023437.t1	MTR_8g080770	98.247	970	17	0	1	970	1	970	0.0	1984
MS.gene023437.t1	MTR_8g080770	98.023	860	17	0	111	970	2	861	0.0	1748
MS.gene023437.t1	MTR_3g085130	80.306	980	182	5	1	970	56	1034	0.0	1611
MS.gene023437.t1	MTR_3g085130	79.394	825	159	5	156	970	1	824	0.0	1333
MS.gene023437.t1	MTR_5g097410	53.683	991	397	14	18	967	243	1212	0.0	1035
MS.gene023437.t1	MTR_8g106150	52.563	995	395	18	21	967	29	994	0.0	976
MS.gene023437.t1	MTR_8g106150	52.128	752	304	15	263	967	9	751	0.0	713
MS.gene023437.t1	MTR_2g067240	52.063	315	89	4	201	513	1	255	3.98e-94	298
MS.gene023437.t1	MTR_3g105590	36.957	276	163	4	395	661	373	646	5.23e-40	160
MS.gene023437.t1	MTR_5g022470	33.750	320	188	6	345	657	462	764	2.42e-38	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene023437.t1	AT1G27320	68.432	982	285	7	1	969	61	1030	0.0	1348
MS.gene023437.t1	AT5G35750	56.830	959	374	10	34	967	230	1173	0.0	1066
MS.gene023437.t1	AT2G01830	53.086	972	397	14	31	967	113	1060	0.0	990
MS.gene023437.t1	AT2G01830	53.086	972	397	14	31	967	124	1071	0.0	989
MS.gene023437.t1	AT2G01830	53.086	972	397	14	31	967	101	1048	0.0	988
MS.gene023437.t1	AT2G01830	53.086	972	397	14	31	967	101	1048	0.0	988
MS.gene023437.t1	AT2G01830	53.086	972	397	14	31	967	101	1048	0.0	988
MS.gene023437.t1	AT2G01830	53.086	972	397	14	31	967	101	1048	0.0	988
MS.gene023437.t1	AT5G10720	35.252	278	145	3	395	668	369	615	6.38e-42	166
MS.gene023437.t1	AT5G10720	32.414	145	78	3	842	968	779	921	9.85e-14	76.3

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Find 188 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGCCTGAGTTGGAA+AGG	0.608555	4.2:-13860025	MS.gene023437:CDS
AAACATGCGTCGAACTGATG+AGG	0.675854	4.2:+13859062	None:intergenic
AAACATGGAGGAACTGGTAT+TGG	0.453248	4.2:-13859836	MS.gene023437:CDS
AAACTGCTAATAGGTGATCC+TGG	0.491656	4.2:-13860610	MS.gene023437:CDS
AAAGATGTGGCTGAAATGGT+GGG	0.675883	4.2:-13863781	None:intergenic
AAAGGATTCAAGCAACTAAT+GGG	0.437942	4.2:-13862386	MS.gene023437:intron
AAATAGACATAGCTTGAATA+TGG	0.369912	4.2:+13863514	None:intergenic
AACAGTACTATCAGTATATT+GGG	0.359905	4.2:-13863725	MS.gene023437:CDS
AACTGCATTCCCTTTGTTTA+TGG	0.188548	4.2:+13859514	None:intergenic
AACTTCCCGATAAAGTTGTT+CGG	0.460960	4.2:+13858493	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGATTCAAGCAACTAAT+GGG	-	chr4.2:13859860-13859879	MS.gene023437:CDS	30.0%
AACTATGCTGAACATTAAGA+AGG	+	chr4.2:13860783-13860802	None:intergenic	30.0%
AATCCAGAAAATACATTGAG+TGG	-	chr4.2:13862185-13862204	MS.gene023437:intron	30.0%
ACGAACAGTTGAACATAATT+AGG	-	chr4.2:13860041-13860060	MS.gene023437:CDS	30.0%
AGATGATTACCATGAAATGA+TGG	-	chr4.2:13860963-13860982	MS.gene023437:CDS	30.0%
AGATTTAGATGTAACTCAAC+AGG	-	chr4.2:13861290-13861309	MS.gene023437:CDS	30.0%
AGGTTGGATTATTAAGAGAA+TGG	-	chr4.2:13859218-13859237	MS.gene023437:CDS	30.0%
AGTGACATGCATGATTAATA+AGG	+	chr4.2:13861715-13861734	None:intergenic	30.0%
ATATTCACTTGTTCATCAAC+AGG	-	chr4.2:13859690-13859709	MS.gene023437:CDS	30.0%
ATATTGCTAAACAGGTATCT+TGG	-	chr4.2:13860527-13860546	MS.gene023437:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	13858469	13863799	13858469	ID=MS.gene023437
chr4.2	mRNA	13858469	13863799	13858469	ID=MS.gene023437.t1;Parent=MS.gene023437
chr4.2	exon	13863467	13863799	13863467	ID=MS.gene023437.t1.exon1;Parent=MS.gene023437.t1
chr4.2	CDS	13863467	13863799	13863467	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13862882	13863163	13862882	ID=MS.gene023437.t1.exon2;Parent=MS.gene023437.t1
chr4.2	CDS	13862882	13863163	13862882	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13862387	13862556	13862387	ID=MS.gene023437.t1.exon3;Parent=MS.gene023437.t1
chr4.2	CDS	13862387	13862556	13862387	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13861515	13861727	13861515	ID=MS.gene023437.t1.exon4;Parent=MS.gene023437.t1
chr4.2	CDS	13861515	13861727	13861515	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13861239	13861425	13861239	ID=MS.gene023437.t1.exon5;Parent=MS.gene023437.t1
chr4.2	CDS	13861239	13861425	13861239	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13861105	13861156	13861105	ID=MS.gene023437.t1.exon6;Parent=MS.gene023437.t1
chr4.2	CDS	13861105	13861156	13861105	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13860774	13861003	13860774	ID=MS.gene023437.t1.exon7;Parent=MS.gene023437.t1
chr4.2	CDS	13860774	13861003	13860774	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13860564	13860662	13860564	ID=MS.gene023437.t1.exon8;Parent=MS.gene023437.t1
chr4.2	CDS	13860564	13860662	13860564	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13859032	13860164	13859032	ID=MS.gene023437.t1.exon9;Parent=MS.gene023437.t1
chr4.2	CDS	13859032	13860164	13859032	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1
chr4.2	exon	13858469	13858682	13858469	ID=MS.gene023437.t1.exon10;Parent=MS.gene023437.t1
chr4.2	CDS	13858469	13858682	13858469	ID=cds.MS.gene023437.t1;Parent=MS.gene023437.t1

Gene Sequence

>MS.gene023437

ATGTGGCTGAAATGGTGGGAGAAGATTTTAGGGAATGGTTACAAAATCAATCAACAGTACTATCAGTATATTGGGTCAAAGAGAGTGAAGAGAGAGTTGTGGAGAAAGCTTTTGTTGACATGGGTATTGGGTTGGACTGTAGTGTCTTTGTGGATCTTCTGCTTTATGAGTTTACAAGCTACTGAGAAGAGGAAAGAAACTCTTGCTAGCATGTGTGATGAAAGGGCTAGGATTGTTCAGGATCAGTTTAATGTTAGTATGAACCATATTCAAGCTATGTCTATTTTGATCTCAACTTTTCATCATGCTAAGAGTCCCTCAGCCATTGATCAGGTACTTATTTTCATTATGTGTAATATTTTTTTTTTGTTCTAACCCTTTGATCAAAGATTGTTCTAGGCAAGGTTCGAAAGCCGGTACTCCCGATCAATTCGACTCTTGCAGATCAGGACTAATGATATCTCTAATCTTACAACTCTGTCACACATGGTTACATTCAATTAATTTATTTTCTCAAACTATTGCCCGTGTTGACGTGTCAGTGTCGTGTACGATGTCATATTGGTGCTACGTACTCTTATTATTAAAATCTTAATTGTTTGATTGGGATAGCAATCTGACTTGTAAAACATGCAGAGAACTTTTGCTAGCTACACAGAAAGAACAGCTTTTGAGAGGCCTCTAACAAGTGGTGTGGCATATGCTGTAAGAGTGCTTCATTATGAAAGGGAACAATTTGAGAAGCAACAAGGTTGGATTATTAAGAGAATGGATACTCTAGAGCAGAATCCAGTTCATAAGAACGATTATGCTGTAGAGGAATTGGAGCCATCCCCTCTTCAGGAAGAATATGCTCCTGTCATATTTGCACAAGATACAATTTCACATGTCATTTCTGTTGATATGCTTTCTGGAAAGGTAGGTTTATGTCGTAAGTTTCTTGTTAAATTTTTTAAGGACCAAAGTTTTCAGCTGAACTAGTATACCTAATGGATATTTAAACCATAGAATAGATAAATCATCTGCGAAAATGCTATACAATAGACTTAAATGTCCTGGTGATAATCTGAATCCGTTCACTCTTTGCTCAAGCTTTAGGGAAAAATGCTTTTTGTGTGTCTATATACATGTATCCTTGTGTACAACTGTAGAGACAAATTCATCGAGTCAGATAGGACTATATGGACGACAAAACTCTCTTTTAAGAATTAGACATTTGTTATATTCACTTGTTCATCAACAGGAAGACCGTGATAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTTCTCAAATCAAATCGGTTAGGAGTTATCCTTACATTTGCCGTCTACAAGAGATATCTTCCATCAAATGCAACTCCAAATGAAAGGATTCAAGCAACTAATGGGTATGCATATATTTTTGAATTTGATTAATTTCTCATGCCATTAGTTTGTTCTTTGTTCATTGATATAGTTTAGCTTACGCCTCTGGTTTATCTAAAGTTCTGAAGTAATTAGTCTACCAAGCAACTAAACACTCCATTCACATTTGATGGGAAAAATTCACGAACAGTTGAACATAATTAGGCCATGTTTGGATTGACGTATTTGAGCTTATCTATTGACATAAGCACCTGTGAATCGTGATACTGTTTGGGAGAGCTTATGGGAACAACTTATGACATGGTCATAGATTGTTTTCACTTTATTTCCATGAGCTATCCAGGACAGCTTATAAAAAATAGCTTATAGCTTATATGAAAACAATTTAACTTTATTTTATCTTTTGTTATAGAAATAGGTTATGCATGAGCACTTATATCATTATATGATTAGCGCTTATGCTATAAGTGCTTAATTAAGTTGTTTACCCAAACTATACCATAATGTAAGAAGAGTGAACAATAATCTAGCTCTTCCCTTGTGATAGTTAAGGTCTTGAAGTTACTACTTATTAACCTACTCTGAAATTCAATAGTTCATGTAATTTTTGGAGAGAAAAAAATTCATGAATACAATCTAGTTTTTGAAGTAGCCTTTTAATTTCTTGTATATTGCTAAACAGGTATCTTGGTGGGGTATTTGATGTTGAGTCATTAGTGGAGAAATTACTTGAGCAACTTGCTAGCAAGCAAAGTGTAATTGTTAATGTATATGACACTACAAATCATACTCATCCAATTGCCATGTATGGCTCAAATATATCAGGGGATGTGTTCAATCATGTCAGCACTCTTAACTTTGGTGACCCTTTCAGGAAACATGAGATGCATTGCAGGTATTAGTAATGCTTCACACCTCTGTCCTTCTTAATGTTCAGCATAGTTTGTAATAAATGAATGACATTTAAGTCCGATTCTTACCCAGGTTCAAACAGAAACCGCCTTTGCCATGTGCTGCAATATTAACTTCAATTGGCATTCTTGTTATTGCTCTCCTTGTTGGACATATTTTCTATGCCACCGTGAATCGAATTGCAAAAGTAGAAGATGATTACCATGAAATGATGGAGCTTAAAAAACGTGCGGAGGCAGCAGATGTTGCAAAATCCCAGGTATGCATCTACCTTTTTAATTTGTTTAATAAATTGGCTTAACCTGCACTAATTACACGGACTTGACCAATTATAATTGCAGTTTCTTGCCACTGTTTCCCATGAAATCAGAACACCGATGAATGGTGTTTTAGGTGAGTTCTCTAATGTTTATGGTTTAGTATATAGTGTCTGATTTTCAACTATTTAGGAAAGATTCCCTAAACCATAACTTTGTTCTATAATGCATTTTCAGGGATGATGCATATGCTTATGGACACAGATTTAGATGTAACTCAACAGGAATATGTCAGAACAGCACAGGAAAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGATCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCAGTGCTTTTTGACATACGTTCGATTTTGGATGATGTATTGTCACTATTTTCTGATAAGTCCCAAGGAAAAGGAGTCGAGGTAATATATTTTTCATTTCTTGGTGCCCTTTGATCATCGTGAAATTTTCAAAACATGCATGTCTAATTATAGTTCATTCCTTTTCATGATTTAATTGTTTGGCAATCACAGTTGGCAGCTTATGTGTCAGATCAAGTTCCTAAACTGCTAATAGGTGATCCTGGAAGGTTTCGGCAAATAATTACTAATCTCATGGGCAACTCAATTAAGGTAAGAACCTTATTAATCATGCATGTCACTTAGGCAATGTTTGGATAGATAACTTATTTAAGCATCTATAGCATGAGAGCCTATCATGTAAGTGCTTATGTAAAAACTATTGCCATTACAAAATATAAAATAAAGTCGAATTGTTTTCATTGAAGCTATAAGTTGTTTTCATAAGCTATCCTAGAGAGTTTATGGACATGTCATAAGCTGTTTTCATAAGATCTCTCAAACAATTTCACAAGTCCTTATGCTAGCAGATAAACTCAAGTAAGTCAAACCAAACAGGCTTTTAGTCAGATATCAGTGTTACAGCAAAGAATGACTAGTAGTATAGTAAAATTGATGTGTATTTTGTAAAGAATAAGTATCATGAAAATTGATTCCGTAATTGTTTTGCAGTTCACAGACAAAGGACACATTTTTGTGACTATCCATCTTGTTGAGGAGATTGTTCATTCTATAGAGGTTGACAATGAATCAAATCCAGAAAATACATTGAGTGGTTTCCCTGTTGTGAAAAGTTGCCTGAGTTGGAAAGGATTCAAGGCTTTCAGTCAAGATGGACCACTTGGTTCTTTCTCTTCCATCTCTAGTGATCTCATCAATTTGATTGTATCTGTTGAAGATACAGGTGACGGTATTCCTAGAGAATCTCAACCTCTCATCTTCACTCCATTCATGCAAGTAGGTTCGTCGATCTCCCGAAAACATGGAGGAACTGGTATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGCGAAATTGGATTTGCAAGTGAACCAAAAACTGGTTCCACTTTTACTTTTACTGCTGTCTTCGCCAATGGACTCCTCAGTTCTAATGAGTGTAAAATACGGCAAATCAACGACCAAACAAAACCTGCATATTCAGAATTTGAGGGTATGAATGCATTGGTTATTGATCCAAGACCTATTAGAGCAAAAGTGTCTCAATATCACATCCAACGCCTTGGCATTCACGTTGAAACGGTTTCAGATTTGAACCAAGGGGTGTCAACCATAAACAAAGGGAATGCAGTTATCAACATGGTCTTGATTGAGCAGGAAGTTTGGTATAGAGATTCAAGCATGTCGTCTCATTTTTTCGATAGCACAAGGAAAATCAGCCACGGTTTTCCTCCAAAGTTGTTCATTCTTGTTAATTCTAGCAACTCTTCTAAAACTAGCAGTGTAACGTCAGATGTTGATAATCCTACTATCATCACAAAACCACTCAGGGCAAGCATGCTTGCTGCGTCACTACAGCGAGAGATGAATGTTAGGAACAAGAGAACTCTAAATAGGGACCTTCAAAATTTGTCTCTTAGCCATCTTCTTGTTGGGAGGAAAATTCTAATTGTTGATGATAATGGCGTGAATCGTGCAGTAGCAGCTGGTGCTTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCTATCTCATCGCTGAAGCCACCTCATCAGTTCGACGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGGTATGCAATAAGATTTATTGTTTTTTCCAAAATTTGATGATTTATAGTTTGGAGTTAAATTTGAAATTTCCACATAAAAAATGTGGAGAAGATTTTCTTAGAAGTTTTTTGTCGACATAACAGAAAAATTGAAAACATTTTACTTAACAGTTTATATAAAAGGAAAAGCTTTGCATTAAGTTGATTAATTGTAAAAACAGTCTAATAGTAATCTACATAGAAGACACACAAGGTGTTCAAACTCTAACTTCTTGCCACAGAAATACCACAATTTATGTAATTATCAATTCTAAAAATACAATCATCATTGTGTTAGAAGTTGGTAATATCTGCTATTCTTTTTCAACAGTTTTGAAGCTACAGGTAGAATCAGAGAGATGGAACAGAATGTAAACACAGAAGTATCTATAAACTGGCATGTGCCGATTTTAGCGATGACTGCAGATGTAATTCAGGCTACACATGAGAAATGCCTAAGGTGTGGAATGGATGGGTATGTTTCAAAACCATTTGAAGCCGAACAACTTTATCGGGAAGTTTCTCGGTTTTTCCTGTCATCTTGA

Protein sequence

>MS.gene023437.t1

MWLKWWEKILGNGYKINQQYYQYIGSKRVKRELWRKLLLTWVLGWTVVSLWIFCFMSLQATEKRKETLASMCDERARIVQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFASYTERTAFERPLTSGVAYAVRVLHYEREQFEKQQGWIIKRMDTLEQNPVHKNDYAVEELEPSPLQEEYAPVIFAQDTISHVISVDMLSGKEDRDNVLRARESGKGVLTAPFRLLKSNRLGVILTFAVYKRYLPSNATPNERIQATNGYLGGVFDVESLVEKLLEQLASKQSVIVNVYDTTNHTHPIAMYGSNISGDVFNHVSTLNFGDPFRKHEMHCRFKQKPPLPCAAILTSIGILVIALLVGHIFYATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRSILDDVLSLFSDKSQGKGVELAAYVSDQVPKLLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPENTLSGFPVVKSCLSWKGFKAFSQDGPLGSFSSISSDLINLIVSVEDTGDGIPRESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASEPKTGSTFTFTAVFANGLLSSNECKIRQINDQTKPAYSEFEGMNALVIDPRPIRAKVSQYHIQRLGIHVETVSDLNQGVSTINKGNAVINMVLIEQEVWYRDSSMSSHFFDSTRKISHGFPPKLFILVNSSNSSKTSSVTSDVDNPTIITKPLRASMLAASLQREMNVRNKRTLNRDLQNLSLSHLLVGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATGRIREMEQNVNTEVSINWHVPILAMTADVIQATHEKCLRCGMDGYVSKPFEAEQLYREVSRFFLSS