Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024189.t1 | XP_003624375.3 | 86.6 | 253 | 34 | 0 | 1 | 253 | 872 | 1124 | 2.00E-127 | 465.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024189.t1 | F4HQ23 | 33.3 | 258 | 147 | 9 | 1 | 250 | 4 | 244 | 2.3e-28 | 127.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024189.t1 | G7KV63 | 86.6 | 253 | 34 | 0 | 1 | 253 | 1 | 253 | 1.4e-127 | 465.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01481 | MS.gene024189 | PPI |
| MS.gene024189 | MS.gene004177 | PPI |
| MS.gene047363 | MS.gene024189 | PPI |
| MS.gene024189 | MS.gene002507 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024189.t1 | MTR_7g082540 | 85.938 | 256 | 36 | 0 | 1 | 256 | 1 | 256 | 8.40e-161 | 447 |
| MS.gene024189.t1 | MTR_7g082390 | 84.553 | 246 | 36 | 1 | 7 | 252 | 10 | 253 | 4.02e-150 | 420 |
| MS.gene024189.t1 | MTR_7g082533 | 34.247 | 219 | 129 | 4 | 32 | 235 | 36 | 254 | 4.02e-40 | 141 |
| MS.gene024189.t1 | MTR_7g082537 | 30.556 | 252 | 149 | 11 | 2 | 237 | 7 | 248 | 6.40e-28 | 108 |
| MS.gene024189.t1 | MTR_8g104520 | 30.859 | 256 | 159 | 8 | 1 | 242 | 1 | 252 | 1.54e-26 | 108 |
| MS.gene024189.t1 | MTR_7g082530 | 32.203 | 236 | 146 | 8 | 16 | 240 | 21 | 253 | 1.02e-25 | 106 |
| MS.gene024189.t1 | MTR_7g082530 | 32.203 | 236 | 146 | 8 | 16 | 240 | 21 | 253 | 1.07e-25 | 106 |
| MS.gene024189.t1 | MTR_7g082460 | 31.120 | 241 | 137 | 10 | 14 | 235 | 21 | 251 | 3.03e-24 | 102 |
| MS.gene024189.t1 | MTR_6g082940 | 27.203 | 261 | 166 | 8 | 1 | 239 | 1 | 259 | 2.34e-23 | 97.8 |
| MS.gene024189.t1 | MTR_6g082920 | 27.203 | 261 | 166 | 8 | 1 | 239 | 1 | 259 | 2.34e-23 | 97.8 |
| MS.gene024189.t1 | MTR_6g083000 | 26.515 | 264 | 169 | 8 | 1 | 241 | 1 | 262 | 3.62e-22 | 94.7 |
| MS.gene024189.t1 | MTR_6g082820 | 26.908 | 249 | 161 | 7 | 10 | 239 | 13 | 259 | 1.71e-21 | 92.0 |
| MS.gene024189.t1 | MTR_7g082470 | 27.273 | 231 | 138 | 9 | 16 | 223 | 1 | 224 | 2.06e-19 | 88.2 |
| MS.gene024189.t1 | MTR_6g083010 | 29.167 | 264 | 150 | 14 | 4 | 242 | 17 | 268 | 7.67e-18 | 81.6 |
| MS.gene024189.t1 | MTR_1g115485 | 28.947 | 266 | 162 | 11 | 13 | 253 | 4 | 267 | 2.48e-17 | 82.0 |
| MS.gene024189.t1 | MTR_6g083760 | 27.805 | 205 | 133 | 9 | 33 | 231 | 41 | 236 | 5.08e-17 | 81.3 |
| MS.gene024189.t1 | MTR_6g082980 | 29.204 | 226 | 132 | 11 | 1 | 205 | 5 | 223 | 2.08e-16 | 77.4 |
| MS.gene024189.t1 | MTR_7g082430 | 28.141 | 199 | 102 | 7 | 32 | 223 | 41 | 205 | 4.23e-16 | 78.6 |
| MS.gene024189.t1 | MTR_6g044830 | 28.856 | 201 | 126 | 8 | 36 | 222 | 4 | 201 | 9.04e-16 | 77.4 |
| MS.gene024189.t1 | MTR_7g082510 | 27.917 | 240 | 134 | 11 | 14 | 237 | 21 | 237 | 1.33e-15 | 77.0 |
| MS.gene024189.t1 | MTR_6g083780 | 27.083 | 240 | 148 | 9 | 32 | 255 | 45 | 273 | 5.22e-15 | 75.1 |
| MS.gene024189.t1 | MTR_7g082500 | 35.043 | 117 | 66 | 4 | 31 | 137 | 10 | 126 | 1.85e-14 | 69.7 |
| MS.gene024189.t1 | MTR_6g082870 | 27.149 | 221 | 142 | 9 | 33 | 240 | 51 | 265 | 8.31e-14 | 71.6 |
| MS.gene024189.t1 | MTR_6g082990 | 26.667 | 210 | 140 | 7 | 38 | 236 | 35 | 241 | 4.72e-13 | 68.2 |
| MS.gene024189.t1 | MTR_1g110230 | 24.883 | 213 | 133 | 10 | 38 | 235 | 22 | 222 | 8.86e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024189.t1 | AT1G66930 | 33.624 | 229 | 133 | 7 | 32 | 254 | 33 | 248 | 2.76e-29 | 117 |
| MS.gene024189.t1 | AT1G66930 | 27.111 | 225 | 135 | 8 | 32 | 235 | 252 | 468 | 3.46e-13 | 70.1 |
| MS.gene024189.t1 | AT5G38210 | 29.496 | 278 | 166 | 9 | 3 | 271 | 14 | 270 | 3.14e-27 | 111 |
| MS.gene024189.t1 | AT1G67000 | 33.333 | 225 | 129 | 7 | 27 | 240 | 26 | 240 | 5.74e-26 | 107 |
| MS.gene024189.t1 | AT1G66880 | 33.163 | 196 | 118 | 5 | 32 | 224 | 33 | 218 | 3.67e-25 | 105 |
| MS.gene024189.t1 | AT1G66880 | 33.163 | 196 | 118 | 5 | 32 | 224 | 33 | 218 | 4.05e-25 | 105 |
| MS.gene024189.t1 | AT1G66880 | 23.556 | 225 | 151 | 6 | 26 | 233 | 246 | 466 | 1.32e-14 | 74.3 |
| MS.gene024189.t1 | AT1G66920 | 33.838 | 198 | 115 | 7 | 32 | 224 | 33 | 219 | 6.59e-25 | 104 |
| MS.gene024189.t1 | AT1G66920 | 33.838 | 198 | 115 | 7 | 32 | 224 | 33 | 219 | 6.95e-25 | 104 |
| MS.gene024189.t1 | AT1G66920 | 33.838 | 198 | 115 | 7 | 32 | 224 | 33 | 219 | 7.78e-25 | 103 |
| MS.gene024189.t1 | AT1G66880 | 32.812 | 192 | 116 | 5 | 36 | 224 | 416 | 597 | 9.18e-24 | 101 |
| MS.gene024189.t1 | AT1G66880 | 29.744 | 195 | 116 | 6 | 38 | 225 | 26 | 206 | 3.06e-18 | 85.1 |
| MS.gene024189.t1 | AT1G66880 | 23.556 | 225 | 151 | 6 | 26 | 233 | 625 | 845 | 1.37e-14 | 74.3 |
| MS.gene024189.t1 | AT1G66880 | 26.374 | 182 | 114 | 5 | 51 | 225 | 229 | 397 | 1.03e-11 | 65.5 |
| MS.gene024189.t1 | AT1G66940 | 31.518 | 257 | 133 | 9 | 11 | 235 | 9 | 254 | 4.03e-22 | 94.0 |
| MS.gene024189.t1 | AT1G66940 | 31.518 | 257 | 133 | 9 | 11 | 235 | 9 | 254 | 4.03e-22 | 94.0 |
| MS.gene024189.t1 | AT1G66940 | 31.950 | 241 | 121 | 9 | 27 | 235 | 25 | 254 | 5.51e-22 | 94.0 |
| MS.gene024189.t1 | AT5G38260 | 28.629 | 248 | 150 | 9 | 11 | 238 | 12 | 252 | 1.10e-21 | 95.1 |
| MS.gene024189.t1 | AT1G66940 | 31.950 | 241 | 121 | 9 | 27 | 235 | 25 | 254 | 1.11e-21 | 93.6 |
| MS.gene024189.t1 | AT5G38210 | 24.409 | 254 | 169 | 7 | 32 | 271 | 20 | 264 | 2.59e-20 | 90.9 |
| MS.gene024189.t1 | AT5G38210 | 24.125 | 257 | 172 | 7 | 29 | 271 | 35 | 282 | 2.69e-20 | 90.9 |
| MS.gene024189.t1 | AT1G67025 | 28.283 | 198 | 129 | 9 | 44 | 235 | 17 | 207 | 2.97e-15 | 73.6 |
| MS.gene024189.t1 | AT5G38240 | 31.304 | 230 | 126 | 10 | 23 | 233 | 26 | 242 | 8.42e-15 | 74.7 |
| MS.gene024189.t1 | AT5G38240 | 31.304 | 230 | 126 | 10 | 23 | 233 | 26 | 242 | 1.01e-14 | 74.3 |
| MS.gene024189.t1 | AT1G66910 | 24.390 | 246 | 157 | 7 | 13 | 233 | 16 | 257 | 6.12e-14 | 72.0 |
| MS.gene024189.t1 | AT1G66910 | 24.291 | 247 | 158 | 7 | 12 | 233 | 15 | 257 | 7.18e-14 | 72.0 |
| MS.gene024189.t1 | AT5G38250 | 36.275 | 102 | 62 | 2 | 36 | 135 | 41 | 141 | 2.07e-13 | 70.5 |
| MS.gene024189.t1 | AT1G66930 | 27.064 | 218 | 130 | 8 | 32 | 228 | 71 | 280 | 3.97e-12 | 66.6 |
| MS.gene024189.t1 | AT1G66930 | 26.977 | 215 | 128 | 8 | 32 | 225 | 71 | 277 | 4.05e-12 | 66.6 |
Find 67 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTGACCTCTTTGTTTA+TGG | 0.130607 | 7.1:+22371112 | MS.gene024189:CDS |
| AATAATCTTGCACTCTTCTA+TGG | 0.237284 | 7.1:+22371145 | MS.gene024189:CDS |
| TGTGGAACTATAAAACAAAT+TGG | 0.275223 | 7.1:+22370884 | MS.gene024189:CDS |
| TCATTTGTGCTTAAATATAA+AGG | 0.279833 | 7.1:-22370839 | None:intergenic |
| GTGGAATTTGTGGCTATAAC+TGG | 0.286086 | 7.1:+22371428 | MS.gene024189:CDS |
| TTATAGTTTACTCAGGGATT+TGG | 0.298905 | 7.1:+22371625 | MS.gene024189:intron |
| GGATTATGAATTGAAGAATA+TGG | 0.307486 | 7.1:-22370796 | None:intergenic |
| AAAGGGTGGCCACACTCTTT+TGG | 0.336216 | 7.1:-22370932 | None:intergenic |
| TCCTTGCAAATAGTCCTCTT+TGG | 0.355072 | 7.1:-22371056 | None:intergenic |
| ATTCTCAAAGTATGTTCATC+AGG | 0.365108 | 7.1:-22371031 | None:intergenic |
| AATATGTTTATACTTGGTTT+GGG | 0.375773 | 7.1:+22371236 | MS.gene024189:CDS |
| CGCTTTCCATGTCATTCAAA+TGG | 0.378949 | 7.1:+22371202 | MS.gene024189:CDS |
| CTGATGAATATGTTTATACT+TGG | 0.380912 | 7.1:+22371230 | MS.gene024189:CDS |
| TCTCAAGAATCTCCATCTTC+AGG | 0.381182 | 7.1:+22371511 | MS.gene024189:CDS |
| GAATATGTTTATACTTGGTT+TGG | 0.381738 | 7.1:+22371235 | MS.gene024189:CDS |
| CAATTACTTCCCCTTTGAAC+AGG | 0.397970 | 7.1:+22371179 | MS.gene024189:CDS |
| GAGGTGGATTTGTGGTGAAA+TGG | 0.401570 | 7.1:+22371365 | MS.gene024189:CDS |
| CAATGCGTGGCTGTGGCAAA+TGG | 0.409336 | 7.1:-22371669 | None:intergenic |
| GTGGCTATAACTGGATTTCA+AGG | 0.410918 | 7.1:+22371437 | MS.gene024189:CDS |
| AGGTGGATTTGTGGTGAAAT+GGG | 0.430924 | 7.1:+22371366 | MS.gene024189:CDS |
| ATGGAAAGCGCCTGTTCAAA+GGG | 0.432802 | 7.1:-22371189 | None:intergenic |
| ACGTTGGCCTCCGCAGGAAC+AGG | 0.441882 | 7.1:-22371467 | None:intergenic |
| CGCTTCGCAATGCGTGGCTG+TGG | 0.453842 | 7.1:-22371676 | None:intergenic |
| CATGGAAAGCGCCTGTTCAA+AGG | 0.473369 | 7.1:-22371190 | None:intergenic |
| TACAAGTGAGATTCAGCAAA+GGG | 0.479759 | 7.1:-22370949 | None:intergenic |
| CAAAGTATGTTCATCAGGGT+TGG | 0.483749 | 7.1:-22371026 | None:intergenic |
| AGTGCAAGATTATTGTAGTC+AGG | 0.493983 | 7.1:-22371136 | None:intergenic |
| CATTACATTATAGTTTACTC+AGG | 0.494118 | 7.1:+22371618 | MS.gene024189:intron |
| TTATATTTAAGCACAAATGA+AGG | 0.514339 | 7.1:+22370842 | MS.gene024189:CDS |
| ATACAAAGTGCAATCGGAGG+TGG | 0.521652 | 7.1:+22371349 | MS.gene024189:CDS |
| ATGGAGATTCTTGAGACTGT+GGG | 0.522612 | 7.1:-22371504 | None:intergenic |
| ACTAGAATACAAAGTGCAAT+CGG | 0.525776 | 7.1:+22371343 | MS.gene024189:CDS |
| CTGGAACAACCATACTTTCA+CGG | 0.529371 | 7.1:-22371288 | None:intergenic |
| GAATATCCATTTGAATGACA+TGG | 0.532096 | 7.1:-22371208 | None:intergenic |
| TGTGAGAATCTGTTTAATTG+TGG | 0.537109 | 7.1:+22370866 | MS.gene024189:CDS |
| TCTTTAGACATACCTGAAGA+TGG | 0.540772 | 7.1:-22371523 | None:intergenic |
| GGTCGATCCCCTCCCCAGAA+AGG | 0.542122 | 7.1:-22370911 | None:intergenic |
| TTTGTGGTGAAATGGGTAGC+TGG | 0.543060 | 7.1:+22371373 | MS.gene024189:CDS |
| TGCAATCGGAGGTGGATTTG+TGG | 0.547961 | 7.1:+22371357 | MS.gene024189:CDS |
| AATGCGTGGCTGTGGCAAAT+GGG | 0.548651 | 7.1:-22371668 | None:intergenic |
| AGAACAACGTTGGCCTCCGC+AGG | 0.555505 | 7.1:-22371473 | None:intergenic |
| GTTGTGTTGACAAGTTCTGT+TGG | 0.558070 | 7.1:-22371085 | None:intergenic |
| TTCAAAGGGGAAGTAATTGA+AGG | 0.559532 | 7.1:-22371175 | None:intergenic |
| ATCACACGCTTCGCAATGCG+TGG | 0.580087 | 7.1:-22371682 | None:intergenic |
| GCAATCAACGAATTCAAGAC+TGG | 0.582114 | 7.1:-22371307 | None:intergenic |
| ATTACATTATAGTTTACTCA+GGG | 0.597654 | 7.1:+22371619 | MS.gene024189:intron |
| CAAACAACCTGTTCCTGCGG+AGG | 0.608810 | 7.1:+22371460 | MS.gene024189:CDS |
| ACCAAAGAGGACTATTTGCA+AGG | 0.610215 | 7.1:+22371055 | MS.gene024189:CDS |
| TTCTCAAAGTATGTTCATCA+GGG | 0.618025 | 7.1:-22371030 | None:intergenic |
| TGGAGGATAATAAACAAGGA+AGG | 0.620121 | 7.1:-22370776 | None:intergenic |
| GTATCTGAATCAGTTTCAAG+AGG | 0.620450 | 7.1:-22370817 | None:intergenic |
| CAGCTATATAACACTCAATG+AGG | 0.628170 | 7.1:+22370982 | MS.gene024189:CDS |
| TACTTTGAGAATCACCAAAG+AGG | 0.632633 | 7.1:+22371042 | MS.gene024189:CDS |
| AATATGGAGGATAATAAACA+AGG | 0.638872 | 7.1:-22370780 | None:intergenic |
| TTATGAATTGAAGAATATGG+AGG | 0.642427 | 7.1:-22370793 | None:intergenic |
| AGGCAAACAACCTGTTCCTG+CGG | 0.652411 | 7.1:+22371457 | MS.gene024189:CDS |
| GATGGAGATTCTTGAGACTG+TGG | 0.652705 | 7.1:-22371505 | None:intergenic |
| AAAGGGGAAGTAATTGAAGG+TGG | 0.654842 | 7.1:-22371172 | None:intergenic |
| ATACAAGTGAGATTCAGCAA+AGG | 0.657304 | 7.1:-22370950 | None:intergenic |
| AGTCAGGACCATAAACAAAG+AGG | 0.660133 | 7.1:-22371120 | None:intergenic |
| TGGAGATTCTTGAGACTGTG+GGG | 0.660697 | 7.1:-22371503 | None:intergenic |
| GGGGTTCATTAGAACAACGT+TGG | 0.660979 | 7.1:-22371483 | None:intergenic |
| GGAGATTCTTGAGACTGTGG+GGG | 0.662358 | 7.1:-22371502 | None:intergenic |
| GGGGATCGACCAAAAGAGTG+TGG | 0.667307 | 7.1:+22370923 | MS.gene024189:CDS |
| AAGTGAGATTCAGCAAAGGG+TGG | 0.689841 | 7.1:-22370946 | None:intergenic |
| AGAATACAAAGTGCAATCGG+AGG | 0.696243 | 7.1:+22371346 | MS.gene024189:CDS |
| TGGAAAGCGCCTGTTCAAAG+GGG | 0.720398 | 7.1:-22371188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGTTTATACTTGGTTT+GGG | + | chr7.1:22371236-22371255 | MS.gene024189:CDS | 20.0% |
| !! | ATTACATTATAGTTTACTCA+GGG | + | chr7.1:22371619-22371638 | MS.gene024189:intron | 20.0% |
| !! | TCATTTGTGCTTAAATATAA+AGG | - | chr7.1:22370842-22370861 | None:intergenic | 20.0% |
| !! | TTATATTTAAGCACAAATGA+AGG | + | chr7.1:22370842-22370861 | MS.gene024189:CDS | 20.0% |
| ! | AATATGGAGGATAATAAACA+AGG | - | chr7.1:22370783-22370802 | None:intergenic | 25.0% |
| ! | CATTACATTATAGTTTACTC+AGG | + | chr7.1:22371618-22371637 | MS.gene024189:intron | 25.0% |
| ! | CTGATGAATATGTTTATACT+TGG | + | chr7.1:22371230-22371249 | MS.gene024189:CDS | 25.0% |
| ! | GAATATGTTTATACTTGGTT+TGG | + | chr7.1:22371235-22371254 | MS.gene024189:CDS | 25.0% |
| ! | GGATTATGAATTGAAGAATA+TGG | - | chr7.1:22370799-22370818 | None:intergenic | 25.0% |
| ! | TGTGGAACTATAAAACAAAT+TGG | + | chr7.1:22370884-22370903 | MS.gene024189:CDS | 25.0% |
| ! | TTATGAATTGAAGAATATGG+AGG | - | chr7.1:22370796-22370815 | None:intergenic | 25.0% |
| AATAATCTTGCACTCTTCTA+TGG | + | chr7.1:22371145-22371164 | MS.gene024189:CDS | 30.0% | |
| ACTAGAATACAAAGTGCAAT+CGG | + | chr7.1:22371343-22371362 | MS.gene024189:CDS | 30.0% | |
| ATTCTCAAAGTATGTTCATC+AGG | - | chr7.1:22371034-22371053 | None:intergenic | 30.0% | |
| CAAAAATTAGGTGGAATTTG+TGG | + | chr7.1:22371418-22371437 | MS.gene024189:CDS | 30.0% | |
| GAATATCCATTTGAATGACA+TGG | - | chr7.1:22371211-22371230 | None:intergenic | 30.0% | |
| TGTGAGAATCTGTTTAATTG+TGG | + | chr7.1:22370866-22370885 | MS.gene024189:CDS | 30.0% | |
| TTATAGTTTACTCAGGGATT+TGG | + | chr7.1:22371625-22371644 | MS.gene024189:intron | 30.0% | |
| TTCTCAAAGTATGTTCATCA+GGG | - | chr7.1:22371033-22371052 | None:intergenic | 30.0% | |
| ! | TGTGTGAAGTGTCAAAAATT+AGG | + | chr7.1:22371406-22371425 | MS.gene024189:CDS | 30.0% |
| !!! | AACAAATTGGTTTTCCTTTC+TGG | + | chr7.1:22370897-22370916 | MS.gene024189:CDS | 30.0% |
| !!! | ACAAATTGGTTTTCCTTTCT+GGG | + | chr7.1:22370898-22370917 | MS.gene024189:CDS | 30.0% |
| AGTGCAAGATTATTGTAGTC+AGG | - | chr7.1:22371139-22371158 | None:intergenic | 35.0% | |
| ATACAAGTGAGATTCAGCAA+AGG | - | chr7.1:22370953-22370972 | None:intergenic | 35.0% | |
| CAGCTATATAACACTCAATG+AGG | + | chr7.1:22370982-22371001 | MS.gene024189:CDS | 35.0% | |
| GTATCTGAATCAGTTTCAAG+AGG | - | chr7.1:22370820-22370839 | None:intergenic | 35.0% | |
| TACAAGTGAGATTCAGCAAA+GGG | - | chr7.1:22370952-22370971 | None:intergenic | 35.0% | |
| TCTTTAGACATACCTGAAGA+TGG | - | chr7.1:22371526-22371545 | None:intergenic | 35.0% | |
| TGGAGGATAATAAACAAGGA+AGG | - | chr7.1:22370779-22370798 | None:intergenic | 35.0% | |
| TTCAAAGGGGAAGTAATTGA+AGG | - | chr7.1:22371178-22371197 | None:intergenic | 35.0% | |
| ! | AACACTGACCTCTTTGTTTA+TGG | + | chr7.1:22371112-22371131 | MS.gene024189:CDS | 35.0% |
| ! | GTGAAGTGTCAAAAATTAGG+TGG | + | chr7.1:22371409-22371428 | MS.gene024189:CDS | 35.0% |
| ! | TACTTTGAGAATCACCAAAG+AGG | + | chr7.1:22371042-22371061 | MS.gene024189:CDS | 35.0% |
| ! | TTTTTCATGCCGTGAAAGTA+TGG | + | chr7.1:22371279-22371298 | MS.gene024189:CDS | 35.0% |
| !!! | CAAATTGGTTTTCCTTTCTG+GGG | + | chr7.1:22370899-22370918 | MS.gene024189:CDS | 35.0% |
| AAAGGGGAAGTAATTGAAGG+TGG | - | chr7.1:22371175-22371194 | None:intergenic | 40.0% | |
| ACCAAAGAGGACTATTTGCA+AGG | + | chr7.1:22371055-22371074 | MS.gene024189:CDS | 40.0% | |
| AGAATACAAAGTGCAATCGG+AGG | + | chr7.1:22371346-22371365 | MS.gene024189:CDS | 40.0% | |
| AGTCAGGACCATAAACAAAG+AGG | - | chr7.1:22371123-22371142 | None:intergenic | 40.0% | |
| ATGGAGATTCTTGAGACTGT+GGG | - | chr7.1:22371507-22371526 | None:intergenic | 40.0% | |
| CAAAGTATGTTCATCAGGGT+TGG | - | chr7.1:22371029-22371048 | None:intergenic | 40.0% | |
| CAATTACTTCCCCTTTGAAC+AGG | + | chr7.1:22371179-22371198 | MS.gene024189:CDS | 40.0% | |
| CGCTTTCCATGTCATTCAAA+TGG | + | chr7.1:22371202-22371221 | MS.gene024189:CDS | 40.0% | |
| CTGGAACAACCATACTTTCA+CGG | - | chr7.1:22371291-22371310 | None:intergenic | 40.0% | |
| GCAATCAACGAATTCAAGAC+TGG | - | chr7.1:22371310-22371329 | None:intergenic | 40.0% | |
| GTGGAATTTGTGGCTATAAC+TGG | + | chr7.1:22371428-22371447 | MS.gene024189:CDS | 40.0% | |
| GTGGCTATAACTGGATTTCA+AGG | + | chr7.1:22371437-22371456 | MS.gene024189:CDS | 40.0% | |
| TCCTTGCAAATAGTCCTCTT+TGG | - | chr7.1:22371059-22371078 | None:intergenic | 40.0% | |
| TCTCAAGAATCTCCATCTTC+AGG | + | chr7.1:22371511-22371530 | MS.gene024189:CDS | 40.0% | |
| ! | AGGTGGATTTGTGGTGAAAT+GGG | + | chr7.1:22371366-22371385 | MS.gene024189:CDS | 40.0% |
| ! | GTTGTGTTGACAAGTTCTGT+TGG | - | chr7.1:22371088-22371107 | None:intergenic | 40.0% |
| ! | TGGCAAATGGGATTTTCCAA+CGG | - | chr7.1:22371659-22371678 | None:intergenic | 40.0% |
| AAGTGAGATTCAGCAAAGGG+TGG | - | chr7.1:22370949-22370968 | None:intergenic | 45.0% | |
| ATACAAAGTGCAATCGGAGG+TGG | + | chr7.1:22371349-22371368 | MS.gene024189:CDS | 45.0% | |
| GATGGAGATTCTTGAGACTG+TGG | - | chr7.1:22371508-22371527 | None:intergenic | 45.0% | |
| GGGGTTCATTAGAACAACGT+TGG | - | chr7.1:22371486-22371505 | None:intergenic | 45.0% | |
| TCACGGCATGAAAAAGCTTG+AGG | - | chr7.1:22371274-22371293 | None:intergenic | 45.0% | |
| TGGAGATTCTTGAGACTGTG+GGG | - | chr7.1:22371506-22371525 | None:intergenic | 45.0% | |
| TTTGTGGTGAAATGGGTAGC+TGG | + | chr7.1:22371373-22371392 | MS.gene024189:CDS | 45.0% | |
| ! | CAAATGGGATTTTCCAACGG+CGG | - | chr7.1:22371656-22371675 | None:intergenic | 45.0% |
| ! | GAGGTGGATTTGTGGTGAAA+TGG | + | chr7.1:22371365-22371384 | MS.gene024189:CDS | 45.0% |
| !! | ATGGAAAGCGCCTGTTCAAA+GGG | - | chr7.1:22371192-22371211 | None:intergenic | 45.0% |
| !! | TTGGTTTTCCTTTCTGGGGA+GGG | + | chr7.1:22370903-22370922 | MS.gene024189:CDS | 45.0% |
| !!! | ATTGGTTTTCCTTTCTGGGG+AGG | + | chr7.1:22370902-22370921 | MS.gene024189:CDS | 45.0% |
| AATGCGTGGCTGTGGCAAAT+GGG | - | chr7.1:22371671-22371690 | None:intergenic | 50.0% | |
| AGGCAAACAACCTGTTCCTG+CGG | + | chr7.1:22371457-22371476 | MS.gene024189:CDS | 50.0% | |
| GGAGATTCTTGAGACTGTGG+GGG | - | chr7.1:22371505-22371524 | None:intergenic | 50.0% | |
| ! | AAAGGGTGGCCACACTCTTT+TGG | - | chr7.1:22370935-22370954 | None:intergenic | 50.0% |
| ! | GGATTTGGATTTTCCGCCGT+TGG | + | chr7.1:22371640-22371659 | MS.gene024189:CDS | 50.0% |
| ! | TGCAATCGGAGGTGGATTTG+TGG | + | chr7.1:22371357-22371376 | MS.gene024189:CDS | 50.0% |
| !! | CATGGAAAGCGCCTGTTCAA+AGG | - | chr7.1:22371193-22371212 | None:intergenic | 50.0% |
| !! | TGGAAAGCGCCTGTTCAAAG+GGG | - | chr7.1:22371191-22371210 | None:intergenic | 50.0% |
| !! | TGGTTTTCCTTTCTGGGGAG+GGG | + | chr7.1:22370904-22370923 | MS.gene024189:CDS | 50.0% |
| ATCACACGCTTCGCAATGCG+TGG | - | chr7.1:22371685-22371704 | None:intergenic | 55.0% | |
| CAAACAACCTGTTCCTGCGG+AGG | + | chr7.1:22371460-22371479 | MS.gene024189:CDS | 55.0% | |
| CAATGCGTGGCTGTGGCAAA+TGG | - | chr7.1:22371672-22371691 | None:intergenic | 55.0% | |
| GGGGATCGACCAAAAGAGTG+TGG | + | chr7.1:22370923-22370942 | MS.gene024189:CDS | 55.0% | |
| ! | AGAACAACGTTGGCCTCCGC+AGG | - | chr7.1:22371476-22371495 | None:intergenic | 60.0% |
| CGCTTCGCAATGCGTGGCTG+TGG | - | chr7.1:22371679-22371698 | None:intergenic | 65.0% | |
| GGTCGATCCCCTCCCCAGAA+AGG | - | chr7.1:22370914-22370933 | None:intergenic | 65.0% | |
| ! | ACGTTGGCCTCCGCAGGAAC+AGG | - | chr7.1:22371470-22371489 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 22370773 | 22371707 | 22370773 | ID=MS.gene024189 |
| chr7.1 | mRNA | 22370773 | 22371707 | 22370773 | ID=MS.gene024189.t1;Parent=MS.gene024189 |
| chr7.1 | exon | 22370773 | 22371532 | 22370773 | ID=MS.gene024189.t1.exon1;Parent=MS.gene024189.t1 |
| chr7.1 | CDS | 22370773 | 22371532 | 22370773 | ID=cds.MS.gene024189.t1;Parent=MS.gene024189.t1 |
| chr7.1 | exon | 22371631 | 22371707 | 22371631 | ID=MS.gene024189.t1.exon2;Parent=MS.gene024189.t1 |
| chr7.1 | CDS | 22371631 | 22371707 | 22371631 | ID=cds.MS.gene024189.t1;Parent=MS.gene024189.t1 |
| Gene Sequence |
| Protein sequence |
