Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024247.t1 | XP_003624460.1 | 91.7 | 240 | 18 | 1 | 1 | 240 | 51 | 288 | 8.20E-122 | 446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024247.t1 | Q9LYV6 | 60.9 | 230 | 79 | 2 | 1 | 229 | 44 | 263 | 6.2e-78 | 292.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024247.t1 | G7KW78 | 91.7 | 240 | 18 | 1 | 1 | 240 | 51 | 288 | 5.9e-122 | 446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024247 | MS.gene46291 | PPI |
| MS.gene024247 | MS.gene067912 | PPI |
| MS.gene024247 | MS.gene008897 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024247.t1 | MTR_7g083570 | 95.417 | 240 | 9 | 1 | 1 | 240 | 51 | 288 | 3.36e-172 | 475 |
| MS.gene024247.t1 | MTR_3g100750 | 47.475 | 198 | 94 | 3 | 38 | 226 | 59 | 255 | 9.84e-61 | 192 |
| MS.gene024247.t1 | MTR_8g069110 | 48.125 | 160 | 82 | 1 | 67 | 226 | 109 | 267 | 1.09e-52 | 172 |
| MS.gene024247.t1 | MTR_2g076350 | 41.176 | 204 | 107 | 3 | 39 | 229 | 25 | 228 | 8.61e-48 | 158 |
| MS.gene024247.t1 | MTR_6g077990 | 39.394 | 198 | 111 | 2 | 31 | 227 | 8 | 197 | 2.11e-45 | 150 |
| MS.gene024247.t1 | MTR_6g077990 | 43.293 | 164 | 93 | 0 | 64 | 227 | 33 | 196 | 8.44e-45 | 149 |
| MS.gene024247.t1 | MTR_1g033750 | 38.857 | 175 | 107 | 0 | 54 | 228 | 48 | 222 | 1.44e-44 | 149 |
| MS.gene024247.t1 | MTR_1g114640 | 37.989 | 179 | 111 | 0 | 48 | 226 | 40 | 218 | 1.22e-43 | 147 |
| MS.gene024247.t1 | MTR_6g077990 | 45.578 | 147 | 80 | 0 | 81 | 227 | 8 | 154 | 3.15e-43 | 144 |
| MS.gene024247.t1 | MTR_8g100065 | 41.975 | 162 | 93 | 1 | 67 | 227 | 22 | 183 | 6.23e-41 | 139 |
| MS.gene024247.t1 | MTR_8g100065 | 41.975 | 162 | 93 | 1 | 67 | 227 | 44 | 205 | 1.53e-40 | 138 |
| MS.gene024247.t1 | MTR_1g114750 | 35.152 | 165 | 107 | 0 | 64 | 228 | 56 | 220 | 2.16e-36 | 128 |
| MS.gene024247.t1 | MTR_1g114690 | 37.037 | 162 | 102 | 0 | 67 | 228 | 56 | 217 | 1.63e-34 | 123 |
| MS.gene024247.t1 | MTR_1g114690 | 35.583 | 163 | 105 | 0 | 66 | 228 | 55 | 217 | 5.17e-34 | 122 |
| MS.gene024247.t1 | MTR_1g115130 | 38.514 | 148 | 91 | 0 | 81 | 228 | 46 | 193 | 7.65e-33 | 118 |
| MS.gene024247.t1 | MTR_1g114680 | 50.000 | 108 | 54 | 0 | 121 | 228 | 55 | 162 | 1.01e-27 | 104 |
| MS.gene024247.t1 | MTR_1g114690 | 30.457 | 197 | 103 | 1 | 66 | 228 | 55 | 251 | 2.70e-27 | 105 |
| MS.gene024247.t1 | MTR_6g077990 | 41.071 | 112 | 66 | 0 | 64 | 175 | 33 | 144 | 1.71e-24 | 95.5 |
| MS.gene024247.t1 | MTR_1g114640 | 31.538 | 130 | 89 | 0 | 48 | 177 | 40 | 169 | 2.37e-24 | 95.9 |
| MS.gene024247.t1 | MTR_8g100065 | 38.739 | 111 | 67 | 1 | 64 | 173 | 19 | 129 | 8.32e-21 | 85.1 |
| MS.gene024247.t1 | MTR_8g100065 | 39.815 | 108 | 64 | 1 | 67 | 173 | 44 | 151 | 1.13e-20 | 85.5 |
| MS.gene024247.t1 | MTR_1g114690 | 32.456 | 114 | 77 | 0 | 66 | 179 | 55 | 168 | 9.25e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024247.t1 | AT5G13200 | 61.739 | 230 | 77 | 2 | 1 | 229 | 44 | 263 | 1.42e-102 | 298 |
| MS.gene024247.t1 | AT5G13200 | 62.644 | 174 | 54 | 3 | 1 | 173 | 44 | 207 | 1.83e-73 | 223 |
| MS.gene024247.t1 | AT2G22475 | 44.670 | 197 | 98 | 3 | 40 | 226 | 96 | 291 | 6.05e-59 | 188 |
| MS.gene024247.t1 | AT1G28200 | 46.429 | 196 | 94 | 3 | 38 | 226 | 63 | 254 | 7.06e-59 | 187 |
| MS.gene024247.t1 | AT1G28200 | 46.429 | 196 | 94 | 3 | 38 | 226 | 63 | 254 | 7.06e-59 | 187 |
| MS.gene024247.t1 | AT5G23370 | 41.250 | 160 | 94 | 0 | 68 | 227 | 55 | 214 | 1.20e-42 | 144 |
| MS.gene024247.t1 | AT5G23360 | 40.994 | 161 | 95 | 0 | 68 | 228 | 47 | 207 | 3.77e-42 | 142 |
| MS.gene024247.t1 | AT5G08350 | 38.764 | 178 | 104 | 1 | 50 | 227 | 41 | 213 | 3.78e-42 | 143 |
| MS.gene024247.t1 | AT5G23350 | 40.994 | 161 | 95 | 0 | 68 | 228 | 55 | 215 | 9.93e-42 | 142 |
| MS.gene024247.t1 | AT2G22475 | 43.537 | 147 | 72 | 3 | 40 | 176 | 96 | 241 | 2.95e-38 | 134 |
| MS.gene024247.t1 | AT4G40100 | 36.364 | 198 | 79 | 5 | 40 | 226 | 55 | 216 | 1.09e-37 | 132 |
| MS.gene024247.t1 | AT4G01600 | 34.906 | 212 | 129 | 3 | 24 | 226 | 13 | 224 | 1.16e-37 | 132 |
| MS.gene024247.t1 | AT4G01600 | 33.816 | 207 | 133 | 3 | 24 | 226 | 13 | 219 | 8.40e-36 | 127 |
| MS.gene024247.t1 | AT4G01600 | 39.130 | 161 | 97 | 1 | 67 | 226 | 25 | 185 | 1.37e-35 | 125 |
Find 58 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCATATGTTTGATTCT+TGG | 0.179773 | 7.4:+23467299 | MS.gene024247:CDS |
| ACGATTGTGCCAGATGTTAT+TGG | 0.273073 | 7.4:-23467344 | None:intergenic |
| CTGTGATTTGCAGTTAAAAC+AGG | 0.342749 | 7.4:+23468509 | MS.gene024247:intron |
| TTCATTGTCTTCAGCTGCAA+TGG | 0.365963 | 7.4:+23468535 | MS.gene024247:CDS |
| TGTTACCTTTCAACAACAAC+AGG | 0.385011 | 7.4:+23468665 | MS.gene024247:CDS |
| TTGTTGTCTGGATGACTACT+TGG | 0.395182 | 7.4:-23467142 | None:intergenic |
| CACCCTCCGGCCAAGTGACT+TGG | 0.405041 | 7.4:+23468762 | MS.gene024247:CDS |
| TCATTGTCTTCAGCTGCAAT+GGG | 0.409086 | 7.4:+23468536 | MS.gene024247:CDS |
| GCCCGTCAACTGTCACAATC+TGG | 0.413594 | 7.4:-23469621 | None:intergenic |
| ACAACAACAGGGCCTGTTGC+AGG | 0.417937 | 7.4:+23468677 | MS.gene024247:CDS |
| ATGGTGCCTTTAGCGAAGAT+TGG | 0.428167 | 7.4:+23469550 | MS.gene024247:CDS |
| AAGTAAAGGGTTCCTGCAAC+AGG | 0.429659 | 7.4:-23468689 | None:intergenic |
| ATGAATATCTGATAAGTAAA+GGG | 0.435046 | 7.4:-23468702 | None:intergenic |
| ACTGTTCCAATCTTCGCTAA+AGG | 0.459341 | 7.4:-23469556 | None:intergenic |
| TTACAAACTGCTTCTGCTGA+TGG | 0.483740 | 7.4:+23467175 | MS.gene024247:CDS |
| GATGAATATCTGATAAGTAA+AGG | 0.486525 | 7.4:-23468703 | None:intergenic |
| GTCGTTGGTACGGCTACGCC+GGG | 0.491352 | 7.4:-23469724 | None:intergenic |
| GCACGTATGGATGATCTTGC+TGG | 0.491754 | 7.4:-23467231 | None:intergenic |
| ATCCAGATTGTGACAGTTGA+CGG | 0.497932 | 7.4:+23469619 | MS.gene024247:CDS |
| TAAGCCTAGCAGTAGTCCTA+TGG | 0.515052 | 7.4:+23467270 | MS.gene024247:CDS |
| AAGCTACCGCCAATAACATC+TGG | 0.518887 | 7.4:+23467335 | MS.gene024247:CDS |
| GGATGACTACTTGGTACAGC+TGG | 0.522699 | 7.4:-23467133 | None:intergenic |
| CTCCAAGTCACTTGGCCGGA+GGG | 0.523356 | 7.4:-23468764 | None:intergenic |
| CTACTGCTAGGCTTATCAAC+AGG | 0.523543 | 7.4:-23467262 | None:intergenic |
| TGATTCTCCCTCATGATCAC+AGG | 0.530214 | 7.4:-23469583 | None:intergenic |
| TCCAGATTGTGACAGTTGAC+GGG | 0.531799 | 7.4:+23469620 | MS.gene024247:CDS |
| TTGAGTTTCACTGCACCCTC+CGG | 0.532381 | 7.4:+23468749 | MS.gene024247:CDS |
| ACAGGACTGTGTTGCACGTA+TGG | 0.537458 | 7.4:-23467244 | None:intergenic |
| GAGGGTGCAGTGAAACTCAA+AGG | 0.539333 | 7.4:-23468746 | None:intergenic |
| CAGGCCCTGTTGTTGTTGAA+AGG | 0.548045 | 7.4:-23468670 | None:intergenic |
| CAGTTAATCCTGTGATCATG+AGG | 0.557822 | 7.4:+23469575 | MS.gene024247:CDS |
| ATTGCAGCTGAAGACAATGA+AGG | 0.560885 | 7.4:-23468533 | None:intergenic |
| ACAAGGACAACCTCAGCCTC+AGG | 0.564940 | 7.4:+23467198 | MS.gene024247:CDS |
| ATTGTGACAGTTGACGGGCA+TGG | 0.565910 | 7.4:+23469625 | MS.gene024247:CDS |
| AGGGTGCAGTGAAACTCAAA+GGG | 0.565964 | 7.4:-23468745 | None:intergenic |
| TTGAAGAACTAGTTAGTCGT+TGG | 0.566224 | 7.4:-23469739 | None:intergenic |
| AGTCGTTGGTACGGCTACGC+CGG | 0.571636 | 7.4:-23469725 | None:intergenic |
| GTAGCTCCAAGTCACTTGGC+CGG | 0.578164 | 7.4:-23468768 | None:intergenic |
| GAACTAGTTAGTCGTTGGTA+CGG | 0.588752 | 7.4:-23469734 | None:intergenic |
| TGTAGTAGCTCCAAGTCACT+TGG | 0.593028 | 7.4:-23468772 | None:intergenic |
| ACTGCTTCTGCTGATGGACA+AGG | 0.594269 | 7.4:+23467181 | MS.gene024247:CDS |
| ATTGTGCCAGATGTTATTGG+CGG | 0.596019 | 7.4:-23467341 | None:intergenic |
| GCTCCAAGTCACTTGGCCGG+AGG | 0.599038 | 7.4:-23468765 | None:intergenic |
| ATATGAAGAATTGATTCCAT+AGG | 0.605924 | 7.4:-23467286 | None:intergenic |
| TAGTAATGAACCTGAGGCTG+AGG | 0.610263 | 7.4:-23467208 | None:intergenic |
| GATTCCATAGGACTACTGCT+AGG | 0.615191 | 7.4:-23467274 | None:intergenic |
| TAAAGCAGTAAAGAACCTAT+CGG | 0.619248 | 7.4:+23469678 | MS.gene024247:CDS |
| GCAGTAAAGAACCTATCGGA+AGG | 0.626352 | 7.4:+23469682 | MS.gene024247:CDS |
| AGTGACTTGGAGCTACTACA+AGG | 0.629250 | 7.4:+23468775 | MS.gene024247:CDS |
| GACTGTAAAAGCGATATCAG+AGG | 0.638142 | 7.4:+23468571 | MS.gene024247:CDS |
| AATGTGAGATGCCTTCCGAT+AGG | 0.639873 | 7.4:-23469693 | None:intergenic |
| ACTGTAAAAGCGATATCAGA+GGG | 0.644668 | 7.4:+23468572 | MS.gene024247:CDS |
| TGCTGGTAGTAATGAACCTG+AGG | 0.645046 | 7.4:-23467214 | None:intergenic |
| GTTACCTTTCAACAACAACA+GGG | 0.667635 | 7.4:+23468666 | MS.gene024247:CDS |
| AGTTAATCCTGTGATCATGA+GGG | 0.672652 | 7.4:+23469576 | MS.gene024247:CDS |
| TGTGATTTGCAGTTAAAACA+GGG | 0.680349 | 7.4:+23468510 | MS.gene024247:intron |
| CATTGTCTTCAGCTGCAATG+GGG | 0.684360 | 7.4:+23468537 | MS.gene024247:CDS |
| GTAAAAGCGATATCAGAGGG+TGG | 0.696098 | 7.4:+23468575 | MS.gene024247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATATGAAAATAGTTT+TGG | - | chr7.4:23468220-23468239 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | + | chr7.4:23467982-23468001 | MS.gene024247:intron | 10.0% |
| !!! | TAATTTAATTGAATTTTATG+AGG | + | chr7.4:23467569-23467588 | MS.gene024247:intron | 10.0% |
| !!! | TGTATTTATGTTTTATATTA+TGG | - | chr7.4:23469416-23469435 | None:intergenic | 10.0% |
| !! | AGATGATAATTTCAATATTA+AGG | - | chr7.4:23468167-23468186 | None:intergenic | 15.0% |
| !! | CTGTTCATAAATATAATAAA+CGG | - | chr7.4:23468805-23468824 | None:intergenic | 15.0% |
| !! | GATGATAATTTCAATATTAA+GGG | - | chr7.4:23468166-23468185 | None:intergenic | 15.0% |
| !!! | AAATGATTTTTTTAGCAAAA+TGG | + | chr7.4:23468042-23468061 | MS.gene024247:intron | 15.0% |
| !!! | AATTTTTATTAAAATTGTGG+TGG | - | chr7.4:23468385-23468404 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTTCATAGTTTA+AGG | - | chr7.4:23469478-23469497 | None:intergenic | 15.0% |
| !!! | TTTCATATTTTATACTAAGT+TGG | + | chr7.4:23468227-23468246 | MS.gene024247:intron | 15.0% |
| !! | AAAAAAAATCCAAAACAAAC+AGG | + | chr7.4:23468140-23468159 | MS.gene024247:intron | 20.0% |
| !! | ATCAATCTATCTAAATATAG+AGG | - | chr7.4:23467392-23467411 | None:intergenic | 20.0% |
| !! | ATGAATATCTGATAAGTAAA+GGG | - | chr7.4:23468705-23468724 | None:intergenic | 20.0% |
| !! | ATTGAAATGAATGTTTGATA+TGG | + | chr7.4:23469490-23469509 | MS.gene024247:intron | 20.0% |
| !! | CATAAACACTTATTAGTATA+AGG | - | chr7.4:23467648-23467667 | None:intergenic | 20.0% |
| !!! | AAAATTTCTATTACACCTTT+TGG | + | chr7.4:23469445-23469464 | MS.gene024247:intron | 20.0% |
| !!! | ATATATCTATGAGAGTTTTT+GGG | + | chr7.4:23468299-23468318 | MS.gene024247:intron | 20.0% |
| !!! | TATATATCTATGAGAGTTTT+TGG | + | chr7.4:23468298-23468317 | MS.gene024247:intron | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | - | chr7.4:23467979-23467998 | None:intergenic | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | + | chr7.4:23468015-23468034 | MS.gene024247:intron | 20.0% |
| ! | ACTCTCATAGATATATAGTA+AGG | - | chr7.4:23468295-23468314 | None:intergenic | 25.0% |
| ! | GATGAATATCTGATAAGTAA+AGG | - | chr7.4:23468706-23468725 | None:intergenic | 25.0% |
| ! | TAATCCACTCAAGTAATTTA+CGG | - | chr7.4:23469258-23469277 | None:intergenic | 25.0% |
| ! | TTATATTGTGTAATAGGTGA+TGG | + | chr7.4:23469531-23469550 | MS.gene024247:intron | 25.0% |
| ! | TTCTTCATATGTTTGATTCT+TGG | + | chr7.4:23467299-23467318 | MS.gene024247:CDS | 25.0% |
| !! | ATATGAAGAATTGATTCCAT+AGG | - | chr7.4:23467289-23467308 | None:intergenic | 25.0% |
| !! | TCATTTTCTAACTTCAAAAC+TGG | + | chr7.4:23469097-23469116 | MS.gene024247:intron | 25.0% |
| !! | TTAAGTTTGTTTATCCAGAT+AGG | + | chr7.4:23467682-23467701 | MS.gene024247:intron | 25.0% |
| !! | TTTTATGCTAACAATATTGC+TGG | - | chr7.4:23469147-23469166 | None:intergenic | 25.0% |
| !!! | CTATTGAACAAATTTTGACA+AGG | - | chr7.4:23468829-23468848 | None:intergenic | 25.0% |
| !!! | GACTTGTTATATTGTGTAAT+AGG | + | chr7.4:23469525-23469544 | MS.gene024247:intron | 25.0% |
| !!! | TAAATTACTTGAGTGGATTA+GGG | + | chr7.4:23469258-23469277 | MS.gene024247:intron | 25.0% |
| !!! | TACAATAGTCAATTTGTTGT+TGG | + | chr7.4:23469026-23469045 | MS.gene024247:intron | 25.0% |
| AAAATGAACACATGAGAGAA+CGG | - | chr7.4:23469084-23469103 | None:intergenic | 30.0% | |
| ACGTCATATATGTAGTACTA+CGG | + | chr7.4:23469294-23469313 | MS.gene024247:intron | 30.0% | |
| AGATATATAGTAAGGAGCTT+AGG | - | chr7.4:23468287-23468306 | None:intergenic | 30.0% | |
| TAAAGCAGTAAAGAACCTAT+CGG | + | chr7.4:23469678-23469697 | MS.gene024247:CDS | 30.0% | |
| TAGTCTAGCATCTCATAATT+TGG | + | chr7.4:23467712-23467731 | MS.gene024247:intron | 30.0% | |
| TCACATATTGACACAAAAGA+GGG | - | chr7.4:23469375-23469394 | None:intergenic | 30.0% | |
| TTATGAGATGCTAGACTATT+AGG | - | chr7.4:23467710-23467729 | None:intergenic | 30.0% | |
| ! | CAAAGTTCTGATAATATCCA+CGG | - | chr7.4:23468351-23468370 | None:intergenic | 30.0% |
| ! | GTAAATTACTTGAGTGGATT+AGG | + | chr7.4:23469257-23469276 | MS.gene024247:intron | 30.0% |
| ! | TGTGATTTGCAGTTAAAACA+GGG | + | chr7.4:23468510-23468529 | MS.gene024247:intron | 30.0% |
| ! | TTGTTCAATAGAGCATTAGA+GGG | + | chr7.4:23468838-23468857 | MS.gene024247:intron | 30.0% |
| ! | TTGTTGTTGGTAGACATAAT+TGG | + | chr7.4:23469039-23469058 | MS.gene024247:intron | 30.0% |
| ! | TTTGTTCAATAGAGCATTAG+AGG | + | chr7.4:23468837-23468856 | MS.gene024247:intron | 30.0% |
| ! | TTTTTGCGTGAGTCAATTTA+GGG | + | chr7.4:23467798-23467817 | MS.gene024247:intron | 30.0% |
| !! | TATATCGAGCATTGATAAGT+AGG | + | chr7.4:23468886-23468905 | MS.gene024247:intron | 30.0% |
| !!! | TTTTTTGCGTGAGTCAATTT+AGG | + | chr7.4:23467797-23467816 | MS.gene024247:intron | 30.0% |
| AAATGAACACATGAGAGAAC+GGG | - | chr7.4:23469083-23469102 | None:intergenic | 35.0% | |
| AAGCTGGTATTGTTGTAATC+TGG | - | chr7.4:23469321-23469340 | None:intergenic | 35.0% | |
| ACTGTAAAAGCGATATCAGA+GGG | + | chr7.4:23468572-23468591 | MS.gene024247:CDS | 35.0% | |
| AGTTAATCCTGTGATCATGA+GGG | + | chr7.4:23469576-23469595 | MS.gene024247:CDS | 35.0% | |
| AGTTCCGTAAATTACTTGAG+TGG | + | chr7.4:23469251-23469270 | MS.gene024247:intron | 35.0% | |
| CTCACATATTGACACAAAAG+AGG | - | chr7.4:23469376-23469395 | None:intergenic | 35.0% | |
| CTTACTTTCATAAGCTCTCT+AGG | + | chr7.4:23467529-23467548 | MS.gene024247:intron | 35.0% | |
| GTTACCTTTCAACAACAACA+GGG | + | chr7.4:23468666-23468685 | MS.gene024247:CDS | 35.0% | |
| TAGACATAATTGGCCGAATT+CGG | + | chr7.4:23469049-23469068 | MS.gene024247:intron | 35.0% | |
| TAGACTATTAGGTTCCTATC+TGG | - | chr7.4:23467699-23467718 | None:intergenic | 35.0% | |
| TGTTACCTTTCAACAACAAC+AGG | + | chr7.4:23468665-23468684 | MS.gene024247:CDS | 35.0% | |
| TTGCCTAACATACACATGAA+GGG | + | chr7.4:23468446-23468465 | MS.gene024247:intron | 35.0% | |
| TTTGCCTAACATACACATGA+AGG | + | chr7.4:23468445-23468464 | MS.gene024247:intron | 35.0% | |
| ! | AATCCTTCTAGAAGTAAGGA+GGG | - | chr7.4:23467435-23467454 | None:intergenic | 35.0% |
| ! | AGTCAATCCTTCTAGAAGTA+AGG | - | chr7.4:23467439-23467458 | None:intergenic | 35.0% |
| ! | CTGTGATTTGCAGTTAAAAC+AGG | + | chr7.4:23468509-23468528 | MS.gene024247:intron | 35.0% |
| ! | GTTTAAGGCTCTTTACCAAA+AGG | - | chr7.4:23469463-23469482 | None:intergenic | 35.0% |
| ! | TATTAAGGGCCTGTTTGTTT+TGG | - | chr7.4:23468152-23468171 | None:intergenic | 35.0% |
| !!! | AAAGCTGCTTTTTTGTTGTC+TGG | - | chr7.4:23467157-23467176 | None:intergenic | 35.0% |
| !!! | GTCTTTTTCAGCTTCTCATT+TGG | - | chr7.4:23468638-23468657 | None:intergenic | 35.0% |
| ACGATTGTGCCAGATGTTAT+TGG | - | chr7.4:23467347-23467366 | None:intergenic | 40.0% | |
| ACGGGATTAATCACCGAATT+CGG | - | chr7.4:23469065-23469084 | None:intergenic | 40.0% | |
| ACTGTTCCAATCTTCGCTAA+AGG | - | chr7.4:23469559-23469578 | None:intergenic | 40.0% | |
| ATAAGTAGGTAGACACCTGA+GGG | + | chr7.4:23468900-23468919 | MS.gene024247:intron | 40.0% | |
| ATCCAGATTGTGACAGTTGA+CGG | + | chr7.4:23469619-23469638 | MS.gene024247:CDS | 40.0% | |
| ATTGACACAAAAGAGGGACA+AGG | - | chr7.4:23469369-23469388 | None:intergenic | 40.0% | |
| ATTGCAGCTGAAGACAATGA+AGG | - | chr7.4:23468536-23468555 | None:intergenic | 40.0% | |
| ATTGTGCCAGATGTTATTGG+CGG | - | chr7.4:23467344-23467363 | None:intergenic | 40.0% | |
| CAGTTAATCCTGTGATCATG+AGG | + | chr7.4:23469575-23469594 | MS.gene024247:CDS | 40.0% | |
| GACTGTAAAAGCGATATCAG+AGG | + | chr7.4:23468571-23468590 | MS.gene024247:CDS | 40.0% | |
| TAACCCTCCTTACTTCTAGA+AGG | + | chr7.4:23467429-23467448 | MS.gene024247:intron | 40.0% | |
| TCATTGTCTTCAGCTGCAAT+GGG | + | chr7.4:23468536-23468555 | MS.gene024247:CDS | 40.0% | |
| TGTTCCATTATACTACCCTC+AGG | - | chr7.4:23468918-23468937 | None:intergenic | 40.0% | |
| TTACAAACTGCTTCTGCTGA+TGG | + | chr7.4:23467175-23467194 | MS.gene024247:CDS | 40.0% | |
| TTCATTGTCTTCAGCTGCAA+TGG | + | chr7.4:23468535-23468554 | MS.gene024247:CDS | 40.0% | |
| TTGACACAAAAGAGGGACAA+GGG | - | chr7.4:23469368-23469387 | None:intergenic | 40.0% | |
| TTGTTGTCTGGATGACTACT+TGG | - | chr7.4:23467145-23467164 | None:intergenic | 40.0% | |
| ! | AGTTCTGATAATATCCACGG+TGG | - | chr7.4:23468348-23468367 | None:intergenic | 40.0% |
| ! | CAATCCTTCTAGAAGTAAGG+AGG | - | chr7.4:23467436-23467455 | None:intergenic | 40.0% |
| ! | GGGTAGTATAATGGAACAAG+TGG | + | chr7.4:23468920-23468939 | MS.gene024247:intron | 40.0% |
| AAGCTACCGCCAATAACATC+TGG | + | chr7.4:23467335-23467354 | MS.gene024247:CDS | 45.0% | |
| AAGTAAAGGGTTCCTGCAAC+AGG | - | chr7.4:23468692-23468711 | None:intergenic | 45.0% | |
| AATGTGAGATGCCTTCCGAT+AGG | - | chr7.4:23469696-23469715 | None:intergenic | 45.0% | |
| AGGGTGCAGTGAAACTCAAA+GGG | - | chr7.4:23468748-23468767 | None:intergenic | 45.0% | |
| ATGGTGCCTTTAGCGAAGAT+TGG | + | chr7.4:23469550-23469569 | MS.gene024247:CDS | 45.0% | |
| CATTGTCTTCAGCTGCAATG+GGG | + | chr7.4:23468537-23468556 | MS.gene024247:CDS | 45.0% | |
| CCTAACATACACATGAAGGG+CGG | + | chr7.4:23468449-23468468 | MS.gene024247:intron | 45.0% | |
| CTACTGCTAGGCTTATCAAC+AGG | - | chr7.4:23467265-23467284 | None:intergenic | 45.0% | |
| GACACCTGAGGGTAGTATAA+TGG | + | chr7.4:23468911-23468930 | MS.gene024247:intron | 45.0% | |
| GATAAGTAGGTAGACACCTG+AGG | + | chr7.4:23468899-23468918 | MS.gene024247:intron | 45.0% | |
| GATTCCATAGGACTACTGCT+AGG | - | chr7.4:23467277-23467296 | None:intergenic | 45.0% | |
| GCAGTAAAGAACCTATCGGA+AGG | + | chr7.4:23469682-23469701 | MS.gene024247:CDS | 45.0% | |
| GTAAAAGCGATATCAGAGGG+TGG | + | chr7.4:23468575-23468594 | MS.gene024247:CDS | 45.0% | |
| GTCGCAAAGGTAGACACAAT+TGG | - | chr7.4:23469217-23469236 | None:intergenic | 45.0% | |
| GTGGATCGAATCATGCTCTA+AGG | - | chr7.4:23468329-23468348 | None:intergenic | 45.0% | |
| TAAGCCTAGCAGTAGTCCTA+TGG | + | chr7.4:23467270-23467289 | MS.gene024247:CDS | 45.0% | |
| TAGCTGCTCTATAGTCGCAA+AGG | - | chr7.4:23469230-23469249 | None:intergenic | 45.0% | |
| TAGTAATGAACCTGAGGCTG+AGG | - | chr7.4:23467211-23467230 | None:intergenic | 45.0% | |
| TCCAGATTGTGACAGTTGAC+GGG | + | chr7.4:23469620-23469639 | MS.gene024247:CDS | 45.0% | |
| TGACACAAAAGAGGGACAAG+GGG | - | chr7.4:23469367-23469386 | None:intergenic | 45.0% | |
| TGATTCTCCCTCATGATCAC+AGG | - | chr7.4:23469586-23469605 | None:intergenic | 45.0% | |
| TGCTGGTAGTAATGAACCTG+AGG | - | chr7.4:23467217-23467236 | None:intergenic | 45.0% | |
| TGTAGTAGCTCCAAGTCACT+TGG | - | chr7.4:23468775-23468794 | None:intergenic | 45.0% | |
| ! | AGTGACTTGGAGCTACTACA+AGG | + | chr7.4:23468775-23468794 | MS.gene024247:CDS | 45.0% |
| ! | ATCTCACATTTTGTTGCGCC+CGG | + | chr7.4:23469706-23469725 | MS.gene024247:CDS | 45.0% |
| !!! | GGGCATGGTTTTTGGTTCAT+GGG | + | chr7.4:23469640-23469659 | MS.gene024247:CDS | 45.0% |
| !!! | TATAATTTTTATTAAAATTG+TGG | - | chr7.4:23468388-23468407 | None:intergenic | 5.0% |
| ACAGGACTGTGTTGCACGTA+TGG | - | chr7.4:23467247-23467266 | None:intergenic | 50.0% | |
| CCGCCCTTCATGTGTATGTT+AGG | - | chr7.4:23468452-23468471 | None:intergenic | 50.0% | |
| GCACGTATGGATGATCTTGC+TGG | - | chr7.4:23467234-23467253 | None:intergenic | 50.0% | |
| GGATGACTACTTGGTACAGC+TGG | - | chr7.4:23467136-23467155 | None:intergenic | 50.0% | |
| TTGAGTTTCACTGCACCCTC+CGG | + | chr7.4:23468749-23468768 | MS.gene024247:CDS | 50.0% | |
| ! | ACTGCTTCTGCTGATGGACA+AGG | + | chr7.4:23467181-23467200 | MS.gene024247:CDS | 50.0% |
| ! | ATTGTGACAGTTGACGGGCA+TGG | + | chr7.4:23469625-23469644 | MS.gene024247:CDS | 50.0% |
| ! | CAGGCCCTGTTGTTGTTGAA+AGG | - | chr7.4:23468673-23468692 | None:intergenic | 50.0% |
| ! | GAGGGTGCAGTGAAACTCAA+AGG | - | chr7.4:23468749-23468768 | None:intergenic | 50.0% |
| !! | CAGTTGACGGGCATGGTTTT+TGG | + | chr7.4:23469632-23469651 | MS.gene024247:CDS | 50.0% |
| !!! | CGGGCATGGTTTTTGGTTCA+TGG | + | chr7.4:23469639-23469658 | MS.gene024247:CDS | 50.0% |
| ACAACAACAGGGCCTGTTGC+AGG | + | chr7.4:23468677-23468696 | MS.gene024247:CDS | 55.0% | |
| ACAAGGACAACCTCAGCCTC+AGG | + | chr7.4:23467198-23467217 | MS.gene024247:CDS | 55.0% | |
| CACAAAAGAGGGACAAGGGG+TGG | - | chr7.4:23469364-23469383 | None:intergenic | 55.0% | |
| CTAGCATAGCGTAGCGAAGC+TGG | - | chr7.4:23469337-23469356 | None:intergenic | 55.0% | |
| GAGCATGATTCGATCCACCG+TGG | + | chr7.4:23468331-23468350 | MS.gene024247:intron | 55.0% | |
| GCCCGTCAACTGTCACAATC+TGG | - | chr7.4:23469624-23469643 | None:intergenic | 55.0% | |
| GTAGCTCCAAGTCACTTGGC+CGG | - | chr7.4:23468771-23468790 | None:intergenic | 55.0% | |
| AGTCGTTGGTACGGCTACGC+CGG | - | chr7.4:23469728-23469747 | None:intergenic | 60.0% | |
| CTCCAAGTCACTTGGCCGGA+GGG | - | chr7.4:23468767-23468786 | None:intergenic | 60.0% | |
| CACCCTCCGGCCAAGTGACT+TGG | + | chr7.4:23468762-23468781 | MS.gene024247:CDS | 65.0% | |
| GCTCCAAGTCACTTGGCCGG+AGG | - | chr7.4:23468768-23468787 | None:intergenic | 65.0% | |
| GTCGTTGGTACGGCTACGCC+GGG | - | chr7.4:23469727-23469746 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 23467124 | 23469753 | 23467124 | ID=MS.gene024247 |
| chr7.4 | mRNA | 23467124 | 23469753 | 23467124 | ID=MS.gene024247.t1;Parent=MS.gene024247 |
| chr7.4 | exon | 23467124 | 23467364 | 23467124 | ID=MS.gene024247.t1.exon1;Parent=MS.gene024247.t1 |
| chr7.4 | CDS | 23467124 | 23467364 | 23467124 | ID=cds.MS.gene024247.t1;Parent=MS.gene024247.t1 |
| chr7.4 | exon | 23468522 | 23468796 | 23468522 | ID=MS.gene024247.t1.exon2;Parent=MS.gene024247.t1 |
| chr7.4 | CDS | 23468522 | 23468796 | 23468522 | ID=cds.MS.gene024247.t1;Parent=MS.gene024247.t1 |
| chr7.4 | exon | 23469547 | 23469753 | 23469547 | ID=MS.gene024247.t1.exon3;Parent=MS.gene024247.t1 |
| chr7.4 | CDS | 23469547 | 23469753 | 23469547 | ID=cds.MS.gene024247.t1;Parent=MS.gene024247.t1 |
| Gene Sequence |
| Protein sequence |
