Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024249.t1 | XP_003624460.1 | 91.7 | 241 | 18 | 1 | 1 | 241 | 50 | 288 | 2.20E-122 | 448.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024249.t1 | Q9LYV6 | 60.6 | 231 | 80 | 2 | 1 | 230 | 43 | 263 | 4.8e-78 | 292.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024249.t1 | G7KW78 | 91.7 | 241 | 18 | 1 | 1 | 241 | 50 | 288 | 1.6e-122 | 448.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46291 | MS.gene024249 | PPI |
| MS.gene024249 | MS.gene067912 | PPI |
| MS.gene008897 | MS.gene024249 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024249.t1 | MTR_7g083570 | 95.436 | 241 | 9 | 1 | 1 | 241 | 50 | 288 | 4.87e-173 | 478 |
| MS.gene024249.t1 | MTR_3g100750 | 47.475 | 198 | 94 | 3 | 39 | 227 | 59 | 255 | 9.04e-61 | 192 |
| MS.gene024249.t1 | MTR_8g069110 | 48.125 | 160 | 82 | 1 | 68 | 227 | 109 | 267 | 1.14e-52 | 172 |
| MS.gene024249.t1 | MTR_2g076350 | 41.176 | 204 | 107 | 3 | 40 | 230 | 25 | 228 | 8.07e-48 | 158 |
| MS.gene024249.t1 | MTR_6g077990 | 39.394 | 198 | 111 | 2 | 32 | 228 | 8 | 197 | 2.00e-45 | 150 |
| MS.gene024249.t1 | MTR_6g077990 | 43.293 | 164 | 93 | 0 | 65 | 228 | 33 | 196 | 8.90e-45 | 149 |
| MS.gene024249.t1 | MTR_1g033750 | 38.857 | 175 | 107 | 0 | 55 | 229 | 48 | 222 | 1.19e-44 | 149 |
| MS.gene024249.t1 | MTR_1g114640 | 37.989 | 179 | 111 | 0 | 49 | 227 | 40 | 218 | 1.19e-43 | 147 |
| MS.gene024249.t1 | MTR_6g077990 | 45.578 | 147 | 80 | 0 | 82 | 228 | 8 | 154 | 2.85e-43 | 144 |
| MS.gene024249.t1 | MTR_8g100065 | 41.975 | 162 | 93 | 1 | 68 | 228 | 22 | 183 | 6.02e-41 | 139 |
| MS.gene024249.t1 | MTR_8g100065 | 41.975 | 162 | 93 | 1 | 68 | 228 | 44 | 205 | 1.49e-40 | 138 |
| MS.gene024249.t1 | MTR_1g114750 | 35.152 | 165 | 107 | 0 | 65 | 229 | 56 | 220 | 2.11e-36 | 128 |
| MS.gene024249.t1 | MTR_1g114690 | 37.037 | 162 | 102 | 0 | 68 | 229 | 56 | 217 | 1.59e-34 | 123 |
| MS.gene024249.t1 | MTR_1g114690 | 35.583 | 163 | 105 | 0 | 67 | 229 | 55 | 217 | 5.21e-34 | 122 |
| MS.gene024249.t1 | MTR_1g115130 | 38.514 | 148 | 91 | 0 | 82 | 229 | 46 | 193 | 7.79e-33 | 118 |
| MS.gene024249.t1 | MTR_1g114680 | 50.000 | 108 | 54 | 0 | 122 | 229 | 55 | 162 | 1.04e-27 | 104 |
| MS.gene024249.t1 | MTR_1g114690 | 30.612 | 196 | 102 | 1 | 68 | 229 | 56 | 251 | 2.78e-27 | 105 |
| MS.gene024249.t1 | MTR_6g077990 | 41.071 | 112 | 66 | 0 | 65 | 176 | 33 | 144 | 1.71e-24 | 95.5 |
| MS.gene024249.t1 | MTR_1g114640 | 31.538 | 130 | 89 | 0 | 49 | 178 | 40 | 169 | 2.30e-24 | 95.9 |
| MS.gene024249.t1 | MTR_8g100065 | 38.739 | 111 | 67 | 1 | 65 | 174 | 19 | 129 | 8.51e-21 | 85.1 |
| MS.gene024249.t1 | MTR_8g100065 | 39.815 | 108 | 64 | 1 | 68 | 174 | 44 | 151 | 1.12e-20 | 85.5 |
| MS.gene024249.t1 | MTR_1g114690 | 32.456 | 114 | 77 | 0 | 67 | 180 | 55 | 168 | 9.06e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024249.t1 | AT5G13200 | 61.472 | 231 | 78 | 2 | 1 | 230 | 43 | 263 | 7.93e-103 | 299 |
| MS.gene024249.t1 | AT5G13200 | 62.286 | 175 | 55 | 3 | 1 | 174 | 43 | 207 | 1.37e-73 | 223 |
| MS.gene024249.t1 | AT2G22475 | 44.670 | 197 | 98 | 3 | 41 | 227 | 96 | 291 | 4.83e-59 | 189 |
| MS.gene024249.t1 | AT1G28200 | 46.429 | 196 | 94 | 3 | 39 | 227 | 63 | 254 | 6.99e-59 | 187 |
| MS.gene024249.t1 | AT1G28200 | 46.429 | 196 | 94 | 3 | 39 | 227 | 63 | 254 | 6.99e-59 | 187 |
| MS.gene024249.t1 | AT5G23370 | 41.250 | 160 | 94 | 0 | 69 | 228 | 55 | 214 | 9.95e-43 | 144 |
| MS.gene024249.t1 | AT5G23360 | 40.994 | 161 | 95 | 0 | 69 | 229 | 47 | 207 | 3.45e-42 | 143 |
| MS.gene024249.t1 | AT5G08350 | 38.764 | 178 | 104 | 1 | 51 | 228 | 41 | 213 | 3.62e-42 | 143 |
| MS.gene024249.t1 | AT5G23350 | 40.994 | 161 | 95 | 0 | 69 | 229 | 55 | 215 | 1.06e-41 | 142 |
| MS.gene024249.t1 | AT2G22475 | 43.537 | 147 | 72 | 3 | 41 | 177 | 96 | 241 | 3.04e-38 | 134 |
| MS.gene024249.t1 | AT4G01600 | 34.906 | 212 | 129 | 3 | 25 | 227 | 13 | 224 | 9.65e-38 | 132 |
| MS.gene024249.t1 | AT4G40100 | 36.364 | 198 | 79 | 5 | 41 | 227 | 55 | 216 | 1.14e-37 | 132 |
| MS.gene024249.t1 | AT4G01600 | 33.816 | 207 | 133 | 3 | 25 | 227 | 13 | 219 | 9.12e-36 | 127 |
| MS.gene024249.t1 | AT4G01600 | 39.130 | 161 | 97 | 1 | 68 | 227 | 25 | 185 | 1.44e-35 | 125 |
Find 59 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCATATGTTTGATTCT+TGG | 0.179773 | 7.4:+23433083 | MS.gene024249:CDS |
| ACGATTGTGCCAGATGTTAT+TGG | 0.273073 | 7.4:-23433128 | None:intergenic |
| CTGTGATTTGCAGTTAAAAC+AGG | 0.342749 | 7.4:+23434293 | MS.gene024249:intron |
| TTCATTGTCTTCAGCTGCAA+TGG | 0.365963 | 7.4:+23434319 | MS.gene024249:CDS |
| TGTTACCTTTCAACAACAAC+AGG | 0.385011 | 7.4:+23434449 | MS.gene024249:CDS |
| TTGTTGTCTGGATGACTACT+TGG | 0.395182 | 7.4:-23432926 | None:intergenic |
| CACCCTCCGGCCAAGTGACT+TGG | 0.405041 | 7.4:+23434546 | MS.gene024249:CDS |
| TCATTGTCTTCAGCTGCAAT+GGG | 0.409086 | 7.4:+23434320 | MS.gene024249:CDS |
| GCCCGTCAACTGTCACAATC+TGG | 0.413594 | 7.4:-23435405 | None:intergenic |
| ACAACAACAGGGCCTGTTGC+AGG | 0.417937 | 7.4:+23434461 | MS.gene024249:CDS |
| ATGGTGCCTTTAGCGAAGAT+TGG | 0.428167 | 7.4:+23435334 | MS.gene024249:CDS |
| AAGTAAAGGGTTCCTGCAAC+AGG | 0.429659 | 7.4:-23434473 | None:intergenic |
| ATGAATATCTGATAAGTAAA+GGG | 0.435046 | 7.4:-23434486 | None:intergenic |
| ACTGTTCCAATCTTCGCTAA+AGG | 0.459341 | 7.4:-23435340 | None:intergenic |
| TTACAAACTGCTTCTGCTGA+TGG | 0.483740 | 7.4:+23432959 | MS.gene024249:CDS |
| GATGAATATCTGATAAGTAA+AGG | 0.486525 | 7.4:-23434487 | None:intergenic |
| GTCGTTGGTACGGCTACGCC+GGG | 0.491352 | 7.4:-23435508 | None:intergenic |
| GCACGTATGGATGATCTTGC+TGG | 0.491754 | 7.4:-23433015 | None:intergenic |
| ATCCAGATTGTGACAGTTGA+CGG | 0.497932 | 7.4:+23435403 | MS.gene024249:CDS |
| TAAGCCTAGCAGTAGTCCTA+TGG | 0.515052 | 7.4:+23433054 | MS.gene024249:CDS |
| AAGCTACCGCCAATAACATC+TGG | 0.518887 | 7.4:+23433119 | MS.gene024249:CDS |
| GGATGACTACTTGGTACAGC+TGG | 0.522699 | 7.4:-23432917 | None:intergenic |
| CTCCAAGTCACTTGGCCGGA+GGG | 0.523356 | 7.4:-23434548 | None:intergenic |
| CTACTGCTAGGCTTATCAAC+AGG | 0.523543 | 7.4:-23433046 | None:intergenic |
| TGATTCTCCCTCATGATCAC+AGG | 0.530214 | 7.4:-23435367 | None:intergenic |
| TCCAGATTGTGACAGTTGAC+GGG | 0.531799 | 7.4:+23435404 | MS.gene024249:CDS |
| TTGAGTTTCACTGCACCCTC+CGG | 0.532381 | 7.4:+23434533 | MS.gene024249:CDS |
| ACAGGACTGTGTTGCACGTA+TGG | 0.537458 | 7.4:-23433028 | None:intergenic |
| GAGGGTGCAGTGAAACTCAA+AGG | 0.539333 | 7.4:-23434530 | None:intergenic |
| CAGGCCCTGTTGTTGTTGAA+AGG | 0.548045 | 7.4:-23434454 | None:intergenic |
| CAGTTAATCCTGTGATCATG+AGG | 0.557822 | 7.4:+23435359 | MS.gene024249:CDS |
| ATTGCAGCTGAAGACAATGA+AGG | 0.560885 | 7.4:-23434317 | None:intergenic |
| ACAAGGACAACCTCAGCCTC+AGG | 0.564940 | 7.4:+23432982 | MS.gene024249:CDS |
| ATTGTGACAGTTGACGGGCA+TGG | 0.565910 | 7.4:+23435409 | MS.gene024249:CDS |
| AGGGTGCAGTGAAACTCAAA+GGG | 0.565964 | 7.4:-23434529 | None:intergenic |
| TTGAAGAACTAGTTAGTCGT+TGG | 0.566224 | 7.4:-23435523 | None:intergenic |
| AGTCGTTGGTACGGCTACGC+CGG | 0.571636 | 7.4:-23435509 | None:intergenic |
| GTAGCTCCAAGTCACTTGGC+CGG | 0.578164 | 7.4:-23434552 | None:intergenic |
| GAACTAGTTAGTCGTTGGTA+CGG | 0.588752 | 7.4:-23435518 | None:intergenic |
| TGTAGTAGCTCCAAGTCACT+TGG | 0.593028 | 7.4:-23434556 | None:intergenic |
| ACTGCTTCTGCTGATGGACA+AGG | 0.594269 | 7.4:+23432965 | MS.gene024249:CDS |
| ATTGTGCCAGATGTTATTGG+CGG | 0.596019 | 7.4:-23433125 | None:intergenic |
| GCTCCAAGTCACTTGGCCGG+AGG | 0.599038 | 7.4:-23434549 | None:intergenic |
| ATATGAAGAATTGATTCCAT+AGG | 0.605924 | 7.4:-23433070 | None:intergenic |
| TAGTAATGAACCTGAGGCTG+AGG | 0.610263 | 7.4:-23432992 | None:intergenic |
| GATTCCATAGGACTACTGCT+AGG | 0.615191 | 7.4:-23433058 | None:intergenic |
| TAAAGCAGTAAAGAACCTAT+CGG | 0.619248 | 7.4:+23435462 | MS.gene024249:CDS |
| AACTGGGGAACACATATGAT+GGG | 0.620571 | 7.4:+23432890 | None:intergenic |
| GCAGTAAAGAACCTATCGGA+AGG | 0.626352 | 7.4:+23435466 | MS.gene024249:CDS |
| AGTGACTTGGAGCTACTACA+AGG | 0.629250 | 7.4:+23434559 | MS.gene024249:CDS |
| GACTGTAAAAGCGATATCAG+AGG | 0.638142 | 7.4:+23434355 | MS.gene024249:CDS |
| AATGTGAGATGCCTTCCGAT+AGG | 0.639873 | 7.4:-23435477 | None:intergenic |
| ACTGTAAAAGCGATATCAGA+GGG | 0.644668 | 7.4:+23434356 | MS.gene024249:CDS |
| TGCTGGTAGTAATGAACCTG+AGG | 0.645046 | 7.4:-23432998 | None:intergenic |
| GTTACCTTTCAACAACAACA+GGG | 0.667635 | 7.4:+23434450 | MS.gene024249:CDS |
| AGTTAATCCTGTGATCATGA+GGG | 0.672652 | 7.4:+23435360 | MS.gene024249:CDS |
| TGTGATTTGCAGTTAAAACA+GGG | 0.680349 | 7.4:+23434294 | MS.gene024249:intron |
| CATTGTCTTCAGCTGCAATG+GGG | 0.684360 | 7.4:+23434321 | MS.gene024249:CDS |
| GTAAAAGCGATATCAGAGGG+TGG | 0.696098 | 7.4:+23434359 | MS.gene024249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATATGAAAATAGTTT+TGG | - | chr7.4:23434004-23434023 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | + | chr7.4:23433766-23433785 | MS.gene024249:intron | 10.0% |
| !!! | TAATTTAATTGAATTTTATG+AGG | + | chr7.4:23433353-23433372 | MS.gene024249:intron | 10.0% |
| !!! | TGTATTTATGTTTTATATTA+TGG | - | chr7.4:23435200-23435219 | None:intergenic | 10.0% |
| !! | AGATGATAATTTCAATATTA+AGG | - | chr7.4:23433951-23433970 | None:intergenic | 15.0% |
| !! | CTGTTCATAAATATAATAAA+CGG | - | chr7.4:23434589-23434608 | None:intergenic | 15.0% |
| !! | GATGATAATTTCAATATTAA+GGG | - | chr7.4:23433950-23433969 | None:intergenic | 15.0% |
| !!! | AAATGATTTTTTTAGCAAAA+TGG | + | chr7.4:23433826-23433845 | MS.gene024249:intron | 15.0% |
| !!! | AATTTTTATTAAAATTGTGG+TGG | - | chr7.4:23434169-23434188 | None:intergenic | 15.0% |
| !!! | ATTTCAATTTTCATAGTTTA+AGG | - | chr7.4:23435262-23435281 | None:intergenic | 15.0% |
| !!! | TTTCATATTTTATACTAAGT+TGG | + | chr7.4:23434011-23434030 | MS.gene024249:intron | 15.0% |
| !! | AAAAAAAATCCAAAACAAAC+AGG | + | chr7.4:23433924-23433943 | MS.gene024249:intron | 20.0% |
| !! | ATCAATCTATCTAAATATAG+AGG | - | chr7.4:23433176-23433195 | None:intergenic | 20.0% |
| !! | ATGAATATCTGATAAGTAAA+GGG | - | chr7.4:23434489-23434508 | None:intergenic | 20.0% |
| !! | ATTGAAATGAATGTTTGATA+TGG | + | chr7.4:23435274-23435293 | MS.gene024249:intron | 20.0% |
| !! | CATAAACACTTATTAGTATA+AGG | - | chr7.4:23433432-23433451 | None:intergenic | 20.0% |
| !!! | AAAATTTCTATTACACCTTT+TGG | + | chr7.4:23435229-23435248 | MS.gene024249:intron | 20.0% |
| !!! | ATATATCTATGAGAGTTTTT+GGG | + | chr7.4:23434083-23434102 | MS.gene024249:intron | 20.0% |
| !!! | TATATATCTATGAGAGTTTT+TGG | + | chr7.4:23434082-23434101 | MS.gene024249:intron | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | - | chr7.4:23433763-23433782 | None:intergenic | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | + | chr7.4:23433799-23433818 | MS.gene024249:intron | 20.0% |
| ! | ACTCTCATAGATATATAGTA+AGG | - | chr7.4:23434079-23434098 | None:intergenic | 25.0% |
| ! | GATGAATATCTGATAAGTAA+AGG | - | chr7.4:23434490-23434509 | None:intergenic | 25.0% |
| ! | TAATCCACTCAAGTAATTTA+CGG | - | chr7.4:23435042-23435061 | None:intergenic | 25.0% |
| ! | TTATATTGTGTAATAGGTGA+TGG | + | chr7.4:23435315-23435334 | MS.gene024249:intron | 25.0% |
| ! | TTCTTCATATGTTTGATTCT+TGG | + | chr7.4:23433083-23433102 | MS.gene024249:CDS | 25.0% |
| !! | ATATGAAGAATTGATTCCAT+AGG | - | chr7.4:23433073-23433092 | None:intergenic | 25.0% |
| !! | TCATTTTCTAACTTCAAAAC+TGG | + | chr7.4:23434881-23434900 | MS.gene024249:intron | 25.0% |
| !! | TTAAGTTTGTTTATCCAGAT+AGG | + | chr7.4:23433466-23433485 | MS.gene024249:intron | 25.0% |
| !! | TTTTATGCTAACAATATTGC+TGG | - | chr7.4:23434931-23434950 | None:intergenic | 25.0% |
| !!! | CTATTGAACAAATTTTGACA+AGG | - | chr7.4:23434613-23434632 | None:intergenic | 25.0% |
| !!! | GACTTGTTATATTGTGTAAT+AGG | + | chr7.4:23435309-23435328 | MS.gene024249:intron | 25.0% |
| !!! | TAAATTACTTGAGTGGATTA+GGG | + | chr7.4:23435042-23435061 | MS.gene024249:intron | 25.0% |
| !!! | TACAATAGTCAATTTGTTGT+TGG | + | chr7.4:23434810-23434829 | MS.gene024249:intron | 25.0% |
| AAAATGAACACATGAGAGAA+CGG | - | chr7.4:23434868-23434887 | None:intergenic | 30.0% | |
| ACGTCATATATGTAGTACTA+CGG | + | chr7.4:23435078-23435097 | MS.gene024249:intron | 30.0% | |
| AGATATATAGTAAGGAGCTT+AGG | - | chr7.4:23434071-23434090 | None:intergenic | 30.0% | |
| TAAAGCAGTAAAGAACCTAT+CGG | + | chr7.4:23435462-23435481 | MS.gene024249:CDS | 30.0% | |
| TAGTCTAGCATCTCATAATT+TGG | + | chr7.4:23433496-23433515 | MS.gene024249:intron | 30.0% | |
| TCACATATTGACACAAAAGA+GGG | - | chr7.4:23435159-23435178 | None:intergenic | 30.0% | |
| TTATGAGATGCTAGACTATT+AGG | - | chr7.4:23433494-23433513 | None:intergenic | 30.0% | |
| ! | CAAAGTTCTGATAATATCCA+CGG | - | chr7.4:23434135-23434154 | None:intergenic | 30.0% |
| ! | GTAAATTACTTGAGTGGATT+AGG | + | chr7.4:23435041-23435060 | MS.gene024249:intron | 30.0% |
| ! | TGTGATTTGCAGTTAAAACA+GGG | + | chr7.4:23434294-23434313 | MS.gene024249:intron | 30.0% |
| ! | TTGTTCAATAGAGCATTAGA+GGG | + | chr7.4:23434622-23434641 | MS.gene024249:intron | 30.0% |
| ! | TTGTTGTTGGTAGACATAAT+TGG | + | chr7.4:23434823-23434842 | MS.gene024249:intron | 30.0% |
| ! | TTTGTTCAATAGAGCATTAG+AGG | + | chr7.4:23434621-23434640 | MS.gene024249:intron | 30.0% |
| ! | TTTTTGCGTGAGTCAATTTA+GGG | + | chr7.4:23433582-23433601 | MS.gene024249:intron | 30.0% |
| !! | TATATCGAGCATTGATAAGT+AGG | + | chr7.4:23434670-23434689 | MS.gene024249:intron | 30.0% |
| !!! | TTTTTTGCGTGAGTCAATTT+AGG | + | chr7.4:23433581-23433600 | MS.gene024249:intron | 30.0% |
| AAATGAACACATGAGAGAAC+GGG | - | chr7.4:23434867-23434886 | None:intergenic | 35.0% | |
| AAGCTGGTATTGTTGTAATC+TGG | - | chr7.4:23435105-23435124 | None:intergenic | 35.0% | |
| ACTGTAAAAGCGATATCAGA+GGG | + | chr7.4:23434356-23434375 | MS.gene024249:CDS | 35.0% | |
| AGTTAATCCTGTGATCATGA+GGG | + | chr7.4:23435360-23435379 | MS.gene024249:CDS | 35.0% | |
| AGTTCCGTAAATTACTTGAG+TGG | + | chr7.4:23435035-23435054 | MS.gene024249:intron | 35.0% | |
| CTCACATATTGACACAAAAG+AGG | - | chr7.4:23435160-23435179 | None:intergenic | 35.0% | |
| CTTACTTTCATAAGCTCTCT+AGG | + | chr7.4:23433313-23433332 | MS.gene024249:intron | 35.0% | |
| GTTACCTTTCAACAACAACA+GGG | + | chr7.4:23434450-23434469 | MS.gene024249:CDS | 35.0% | |
| TAGACATAATTGGCCGAATT+CGG | + | chr7.4:23434833-23434852 | MS.gene024249:intron | 35.0% | |
| TAGACTATTAGGTTCCTATC+TGG | - | chr7.4:23433483-23433502 | None:intergenic | 35.0% | |
| TGTTACCTTTCAACAACAAC+AGG | + | chr7.4:23434449-23434468 | MS.gene024249:CDS | 35.0% | |
| TTGCCTAACATACACATGAA+GGG | + | chr7.4:23434230-23434249 | MS.gene024249:intron | 35.0% | |
| TTTGCCTAACATACACATGA+AGG | + | chr7.4:23434229-23434248 | MS.gene024249:intron | 35.0% | |
| ! | AATCCTTCTAGAAGTAAGGA+GGG | - | chr7.4:23433219-23433238 | None:intergenic | 35.0% |
| ! | AGTCAATCCTTCTAGAAGTA+AGG | - | chr7.4:23433223-23433242 | None:intergenic | 35.0% |
| ! | CTGTGATTTGCAGTTAAAAC+AGG | + | chr7.4:23434293-23434312 | MS.gene024249:intron | 35.0% |
| ! | GTTTAAGGCTCTTTACCAAA+AGG | - | chr7.4:23435247-23435266 | None:intergenic | 35.0% |
| ! | TATTAAGGGCCTGTTTGTTT+TGG | - | chr7.4:23433936-23433955 | None:intergenic | 35.0% |
| !!! | AAAGCTGCTTTTTTGTTGTC+TGG | - | chr7.4:23432941-23432960 | None:intergenic | 35.0% |
| !!! | GTCTTTTTCAGCTTCTCATT+TGG | - | chr7.4:23434422-23434441 | None:intergenic | 35.0% |
| ACGATTGTGCCAGATGTTAT+TGG | - | chr7.4:23433131-23433150 | None:intergenic | 40.0% | |
| ACGGGATTAATCACCGAATT+CGG | - | chr7.4:23434849-23434868 | None:intergenic | 40.0% | |
| ACTGTTCCAATCTTCGCTAA+AGG | - | chr7.4:23435343-23435362 | None:intergenic | 40.0% | |
| ATAAGTAGGTAGACACCTGA+GGG | + | chr7.4:23434684-23434703 | MS.gene024249:intron | 40.0% | |
| ATCCAGATTGTGACAGTTGA+CGG | + | chr7.4:23435403-23435422 | MS.gene024249:CDS | 40.0% | |
| ATTGACACAAAAGAGGGACA+AGG | - | chr7.4:23435153-23435172 | None:intergenic | 40.0% | |
| ATTGCAGCTGAAGACAATGA+AGG | - | chr7.4:23434320-23434339 | None:intergenic | 40.0% | |
| ATTGTGCCAGATGTTATTGG+CGG | - | chr7.4:23433128-23433147 | None:intergenic | 40.0% | |
| CAGTTAATCCTGTGATCATG+AGG | + | chr7.4:23435359-23435378 | MS.gene024249:CDS | 40.0% | |
| GACTGTAAAAGCGATATCAG+AGG | + | chr7.4:23434355-23434374 | MS.gene024249:CDS | 40.0% | |
| TAACCCTCCTTACTTCTAGA+AGG | + | chr7.4:23433213-23433232 | MS.gene024249:intron | 40.0% | |
| TCATTGTCTTCAGCTGCAAT+GGG | + | chr7.4:23434320-23434339 | MS.gene024249:CDS | 40.0% | |
| TGTTCCATTATACTACCCTC+AGG | - | chr7.4:23434702-23434721 | None:intergenic | 40.0% | |
| TTACAAACTGCTTCTGCTGA+TGG | + | chr7.4:23432959-23432978 | MS.gene024249:CDS | 40.0% | |
| TTCATTGTCTTCAGCTGCAA+TGG | + | chr7.4:23434319-23434338 | MS.gene024249:CDS | 40.0% | |
| TTGACACAAAAGAGGGACAA+GGG | - | chr7.4:23435152-23435171 | None:intergenic | 40.0% | |
| TTGTTGTCTGGATGACTACT+TGG | - | chr7.4:23432929-23432948 | None:intergenic | 40.0% | |
| ! | AGTTCTGATAATATCCACGG+TGG | - | chr7.4:23434132-23434151 | None:intergenic | 40.0% |
| ! | CAATCCTTCTAGAAGTAAGG+AGG | - | chr7.4:23433220-23433239 | None:intergenic | 40.0% |
| ! | GGGTAGTATAATGGAACAAG+TGG | + | chr7.4:23434704-23434723 | MS.gene024249:intron | 40.0% |
| AAGCTACCGCCAATAACATC+TGG | + | chr7.4:23433119-23433138 | MS.gene024249:CDS | 45.0% | |
| AAGTAAAGGGTTCCTGCAAC+AGG | - | chr7.4:23434476-23434495 | None:intergenic | 45.0% | |
| AATGTGAGATGCCTTCCGAT+AGG | - | chr7.4:23435480-23435499 | None:intergenic | 45.0% | |
| AGGGTGCAGTGAAACTCAAA+GGG | - | chr7.4:23434532-23434551 | None:intergenic | 45.0% | |
| ATGGTGCCTTTAGCGAAGAT+TGG | + | chr7.4:23435334-23435353 | MS.gene024249:CDS | 45.0% | |
| CATTGTCTTCAGCTGCAATG+GGG | + | chr7.4:23434321-23434340 | MS.gene024249:CDS | 45.0% | |
| CCTAACATACACATGAAGGG+CGG | + | chr7.4:23434233-23434252 | MS.gene024249:intron | 45.0% | |
| CTACTGCTAGGCTTATCAAC+AGG | - | chr7.4:23433049-23433068 | None:intergenic | 45.0% | |
| GACACCTGAGGGTAGTATAA+TGG | + | chr7.4:23434695-23434714 | MS.gene024249:intron | 45.0% | |
| GATAAGTAGGTAGACACCTG+AGG | + | chr7.4:23434683-23434702 | MS.gene024249:intron | 45.0% | |
| GATTCCATAGGACTACTGCT+AGG | - | chr7.4:23433061-23433080 | None:intergenic | 45.0% | |
| GCAGTAAAGAACCTATCGGA+AGG | + | chr7.4:23435466-23435485 | MS.gene024249:CDS | 45.0% | |
| GTAAAAGCGATATCAGAGGG+TGG | + | chr7.4:23434359-23434378 | MS.gene024249:CDS | 45.0% | |
| GTCGCAAAGGTAGACACAAT+TGG | - | chr7.4:23435001-23435020 | None:intergenic | 45.0% | |
| GTGGATCGAATCATGCTCTA+AGG | - | chr7.4:23434113-23434132 | None:intergenic | 45.0% | |
| TAAGCCTAGCAGTAGTCCTA+TGG | + | chr7.4:23433054-23433073 | MS.gene024249:CDS | 45.0% | |
| TAGCTGCTCTATAGTCGCAA+AGG | - | chr7.4:23435014-23435033 | None:intergenic | 45.0% | |
| TAGTAATGAACCTGAGGCTG+AGG | - | chr7.4:23432995-23433014 | None:intergenic | 45.0% | |
| TCCAGATTGTGACAGTTGAC+GGG | + | chr7.4:23435404-23435423 | MS.gene024249:CDS | 45.0% | |
| TGACACAAAAGAGGGACAAG+GGG | - | chr7.4:23435151-23435170 | None:intergenic | 45.0% | |
| TGATTCTCCCTCATGATCAC+AGG | - | chr7.4:23435370-23435389 | None:intergenic | 45.0% | |
| TGCTGGTAGTAATGAACCTG+AGG | - | chr7.4:23433001-23433020 | None:intergenic | 45.0% | |
| TGTAGTAGCTCCAAGTCACT+TGG | - | chr7.4:23434559-23434578 | None:intergenic | 45.0% | |
| ! | AGTGACTTGGAGCTACTACA+AGG | + | chr7.4:23434559-23434578 | MS.gene024249:CDS | 45.0% |
| ! | ATCTCACATTTTGTTGCGCC+CGG | + | chr7.4:23435490-23435509 | MS.gene024249:CDS | 45.0% |
| !!! | GGGCATGGTTTTTGGTTCAT+GGG | + | chr7.4:23435424-23435443 | MS.gene024249:CDS | 45.0% |
| !!! | TATAATTTTTATTAAAATTG+TGG | - | chr7.4:23434172-23434191 | None:intergenic | 5.0% |
| ACAGGACTGTGTTGCACGTA+TGG | - | chr7.4:23433031-23433050 | None:intergenic | 50.0% | |
| CCGCCCTTCATGTGTATGTT+AGG | - | chr7.4:23434236-23434255 | None:intergenic | 50.0% | |
| GCACGTATGGATGATCTTGC+TGG | - | chr7.4:23433018-23433037 | None:intergenic | 50.0% | |
| GGATGACTACTTGGTACAGC+TGG | - | chr7.4:23432920-23432939 | None:intergenic | 50.0% | |
| TTGAGTTTCACTGCACCCTC+CGG | + | chr7.4:23434533-23434552 | MS.gene024249:CDS | 50.0% | |
| ! | ACTGCTTCTGCTGATGGACA+AGG | + | chr7.4:23432965-23432984 | MS.gene024249:CDS | 50.0% |
| ! | ATTGTGACAGTTGACGGGCA+TGG | + | chr7.4:23435409-23435428 | MS.gene024249:CDS | 50.0% |
| ! | CAGGCCCTGTTGTTGTTGAA+AGG | - | chr7.4:23434457-23434476 | None:intergenic | 50.0% |
| ! | GAGGGTGCAGTGAAACTCAA+AGG | - | chr7.4:23434533-23434552 | None:intergenic | 50.0% |
| !! | CAGTTGACGGGCATGGTTTT+TGG | + | chr7.4:23435416-23435435 | MS.gene024249:CDS | 50.0% |
| !!! | CGGGCATGGTTTTTGGTTCA+TGG | + | chr7.4:23435423-23435442 | MS.gene024249:CDS | 50.0% |
| ACAACAACAGGGCCTGTTGC+AGG | + | chr7.4:23434461-23434480 | MS.gene024249:CDS | 55.0% | |
| ACAAGGACAACCTCAGCCTC+AGG | + | chr7.4:23432982-23433001 | MS.gene024249:CDS | 55.0% | |
| CACAAAAGAGGGACAAGGGG+TGG | - | chr7.4:23435148-23435167 | None:intergenic | 55.0% | |
| CTAGCATAGCGTAGCGAAGC+TGG | - | chr7.4:23435121-23435140 | None:intergenic | 55.0% | |
| GAGCATGATTCGATCCACCG+TGG | + | chr7.4:23434115-23434134 | MS.gene024249:intron | 55.0% | |
| GCCCGTCAACTGTCACAATC+TGG | - | chr7.4:23435408-23435427 | None:intergenic | 55.0% | |
| GTAGCTCCAAGTCACTTGGC+CGG | - | chr7.4:23434555-23434574 | None:intergenic | 55.0% | |
| AGTCGTTGGTACGGCTACGC+CGG | - | chr7.4:23435512-23435531 | None:intergenic | 60.0% | |
| CTCCAAGTCACTTGGCCGGA+GGG | - | chr7.4:23434551-23434570 | None:intergenic | 60.0% | |
| CACCCTCCGGCCAAGTGACT+TGG | + | chr7.4:23434546-23434565 | MS.gene024249:CDS | 65.0% | |
| GCTCCAAGTCACTTGGCCGG+AGG | - | chr7.4:23434552-23434571 | None:intergenic | 65.0% | |
| GTCGTTGGTACGGCTACGCC+GGG | - | chr7.4:23435511-23435530 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 23432905 | 23435537 | 23432905 | ID=MS.gene024249 |
| chr7.4 | mRNA | 23432905 | 23435537 | 23432905 | ID=MS.gene024249.t1;Parent=MS.gene024249 |
| chr7.4 | exon | 23432905 | 23433148 | 23432905 | ID=MS.gene024249.t1.exon1;Parent=MS.gene024249.t1 |
| chr7.4 | CDS | 23432905 | 23433148 | 23432905 | ID=cds.MS.gene024249.t1;Parent=MS.gene024249.t1 |
| chr7.4 | exon | 23434306 | 23434580 | 23434306 | ID=MS.gene024249.t1.exon2;Parent=MS.gene024249.t1 |
| chr7.4 | CDS | 23434306 | 23434580 | 23434306 | ID=cds.MS.gene024249.t1;Parent=MS.gene024249.t1 |
| chr7.4 | exon | 23435331 | 23435537 | 23435331 | ID=MS.gene024249.t1.exon3;Parent=MS.gene024249.t1 |
| chr7.4 | CDS | 23435331 | 23435537 | 23435331 | ID=cds.MS.gene024249.t1;Parent=MS.gene024249.t1 |
| Gene Sequence |
| Protein sequence |
