Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024668.t1 | XP_003611015.2 | 94.9 | 1040 | 47 | 3 | 1 | 1040 | 1 | 1034 | 0.00E+00 | 1896.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024668.t1 | Q9T014 | 46.2 | 1078 | 473 | 17 | 2 | 1040 | 27 | 1036 | 1.8e-246 | 854.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024668.t1 | G7KAM7 | 94.9 | 1040 | 47 | 3 | 1 | 1040 | 1 | 1034 | 0.0e+00 | 1896.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39936 | MS.gene024668 | PPI |
| MS.gene024668 | MS.gene036180 | PPI |
| MS.gene49369 | MS.gene024668 | PPI |
| MS.gene024668 | MS.gene50554 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024668.t1 | MTR_5g009530 | 95.577 | 1040 | 40 | 3 | 1 | 1040 | 1 | 1034 | 0.0 | 2046 |
| MS.gene024668.t1 | MTR_5g009530 | 95.301 | 979 | 40 | 3 | 1 | 979 | 1 | 973 | 0.0 | 1919 |
| MS.gene024668.t1 | MTR_5g009530 | 94.154 | 804 | 41 | 3 | 1 | 804 | 1 | 798 | 0.0 | 1555 |
| MS.gene024668.t1 | MTR_8g027985 | 51.250 | 800 | 334 | 15 | 275 | 1040 | 187 | 964 | 0.0 | 729 |
| MS.gene024668.t1 | MTR_2g085210 | 41.354 | 827 | 409 | 15 | 272 | 1040 | 67 | 875 | 0.0 | 551 |
| MS.gene024668.t1 | MTR_5g085250 | 47.399 | 346 | 170 | 3 | 695 | 1039 | 204 | 538 | 4.09e-108 | 347 |
| MS.gene024668.t1 | MTR_5g085250 | 47.399 | 346 | 170 | 3 | 695 | 1039 | 237 | 571 | 2.77e-107 | 346 |
| MS.gene024668.t1 | MTR_5g085250 | 47.399 | 346 | 170 | 3 | 695 | 1039 | 341 | 675 | 1.14e-105 | 345 |
| MS.gene024668.t1 | MTR_2g085210 | 34.862 | 654 | 321 | 14 | 272 | 851 | 67 | 689 | 3.12e-95 | 318 |
| MS.gene024668.t1 | MTR_2g085210 | 34.862 | 654 | 321 | 14 | 272 | 851 | 67 | 689 | 3.40e-95 | 318 |
| MS.gene024668.t1 | MTR_2g016160 | 30.323 | 155 | 105 | 2 | 782 | 933 | 113 | 267 | 5.05e-13 | 71.6 |
| MS.gene024668.t1 | MTR_1g090827 | 23.643 | 258 | 183 | 9 | 789 | 1036 | 21 | 274 | 6.00e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024668.t1 | AT4G11110 | 47.280 | 1066 | 467 | 19 | 8 | 1040 | 33 | 1036 | 0.0 | 880 |
| MS.gene024668.t1 | AT2G46340 | 44.681 | 1081 | 496 | 24 | 2 | 1040 | 9 | 1029 | 0.0 | 800 |
| MS.gene024668.t1 | AT2G46340 | 44.681 | 1081 | 496 | 24 | 2 | 1040 | 9 | 1029 | 0.0 | 800 |
| MS.gene024668.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 278 | 1040 | 60 | 794 | 0.0 | 552 |
| MS.gene024668.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 278 | 1040 | 60 | 794 | 0.0 | 552 |
| MS.gene024668.t1 | AT1G53090 | 40.482 | 788 | 391 | 12 | 278 | 1040 | 60 | 794 | 0.0 | 552 |
| MS.gene024668.t1 | AT3G15354 | 44.323 | 643 | 308 | 10 | 444 | 1040 | 206 | 844 | 7.95e-172 | 525 |
| MS.gene024668.t1 | AT3G15354 | 44.649 | 598 | 285 | 9 | 485 | 1040 | 1 | 594 | 5.91e-165 | 498 |
| MS.gene024668.t1 | AT3G15354 | 44.649 | 598 | 285 | 9 | 485 | 1040 | 1 | 594 | 5.91e-165 | 498 |
| MS.gene024668.t1 | AT1G53090 | 46.101 | 577 | 286 | 8 | 485 | 1040 | 1 | 573 | 2.83e-164 | 496 |
| MS.gene024668.t1 | AT3G15354 | 43.390 | 643 | 306 | 11 | 444 | 1040 | 206 | 836 | 4.60e-164 | 504 |
| MS.gene024668.t1 | AT2G32950 | 43.659 | 410 | 207 | 5 | 630 | 1039 | 175 | 560 | 6.15e-111 | 356 |
| MS.gene024668.t1 | AT2G32950 | 43.659 | 410 | 207 | 5 | 630 | 1039 | 288 | 673 | 2.48e-109 | 355 |
| MS.gene024668.t1 | AT1G53090 | 34.775 | 601 | 317 | 10 | 278 | 853 | 60 | 610 | 8.63e-99 | 325 |
| MS.gene024668.t1 | AT3G15354 | 38.546 | 454 | 232 | 8 | 444 | 851 | 206 | 658 | 9.09e-89 | 299 |
| MS.gene024668.t1 | AT5G52250 | 34.877 | 324 | 184 | 11 | 727 | 1037 | 71 | 380 | 8.90e-43 | 161 |
| MS.gene024668.t1 | AT5G23730 | 34.627 | 335 | 179 | 12 | 728 | 1036 | 41 | 361 | 1.13e-42 | 160 |
| MS.gene024668.t1 | AT2G21390 | 24.419 | 258 | 181 | 9 | 789 | 1036 | 21 | 274 | 1.82e-11 | 69.3 |
| MS.gene024668.t1 | AT3G49660 | 27.203 | 261 | 164 | 13 | 730 | 981 | 27 | 270 | 4.91e-11 | 65.9 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATTCAATTAGTGATAT+TGG | 0.180525 | 5.1:+3172884 | MS.gene024668:CDS |
| TGGAAAGTTTAAATATATTT+AGG | 0.190587 | 5.1:+3173491 | MS.gene024668:CDS |
| AACATCTTCCTCTGTTGATA+TGG | 0.226062 | 5.1:+3173669 | MS.gene024668:CDS |
| CTACAATCTGAAGTGATTAA+TGG | 0.230123 | 5.1:+3175905 | MS.gene024668:CDS |
| TATCAGATTGGAAATAATTC+AGG | 0.230148 | 5.1:+3172857 | MS.gene024668:CDS |
| GACGAGAGTGTGAGGGTTAC+TGG | 0.233652 | 5.1:+3173712 | MS.gene024668:CDS |
| GTTCTTAGTATATCTTTATC+TGG | 0.244121 | 5.1:-3176334 | None:intergenic |
| TGTTGGATCCACCTCGTTTC+CGG | 0.261043 | 5.1:+3172952 | MS.gene024668:CDS |
| ATTCCGATTCTGCATCTTCT+TGG | 0.266535 | 5.1:-3175970 | None:intergenic |
| TCCTCTCATTTGCTTGCCTT+TGG | 0.266707 | 5.1:+3179135 | MS.gene024668:CDS |
| ATTTAGGAAAATTGTGGATT+TGG | 0.269624 | 5.1:+3173507 | MS.gene024668:CDS |
| CATTCAGTCGTGCTAGATTT+AGG | 0.275646 | 5.1:-3173412 | None:intergenic |
| CCAAACTTGTGTGAAGTAAT+TGG | 0.283179 | 5.1:-3180447 | None:intergenic |
| CCAATTACTTCACACAAGTT+TGG | 0.299695 | 5.1:+3180447 | MS.gene024668:CDS |
| CTGATAATTCATTGAAGATC+TGG | 0.300298 | 5.1:+3179289 | MS.gene024668:CDS |
| AAAGTGTTACAAATGGTTTA+AGG | 0.300773 | 5.1:+3180588 | MS.gene024668:CDS |
| AGAGAGCATATAACATTTGC+AGG | 0.304868 | 5.1:-3176505 | None:intergenic |
| TCTTTCACATATAGAATTAC+TGG | 0.313843 | 5.1:-3173902 | None:intergenic |
| GGAATTCAATTAGTGATATT+GGG | 0.319812 | 5.1:+3172885 | MS.gene024668:CDS |
| ATACTCAGCAAACCCTGATT+TGG | 0.324942 | 5.1:-3173104 | None:intergenic |
| CAATCTCAGTTCATTTGTAT+TGG | 0.326529 | 5.1:-3176227 | None:intergenic |
| CATTAATCACTTCAGATTGT+AGG | 0.328405 | 5.1:-3175904 | None:intergenic |
| AATTGGTCTGTGACCCAAAA+AGG | 0.335217 | 5.1:+3176364 | MS.gene024668:CDS |
| GTTCATTTGTATTGGAGATT+GGG | 0.336479 | 5.1:-3176219 | None:intergenic |
| ATTTAATGTAAGATGGATAA+AGG | 0.342528 | 5.1:-3173567 | None:intergenic |
| TGAAGTGATTAATGGATTAC+AGG | 0.351762 | 5.1:+3175913 | MS.gene024668:CDS |
| AGTTCATTTGTATTGGAGAT+TGG | 0.355893 | 5.1:-3176220 | None:intergenic |
| AATTCTTCAACTGTTTCATA+TGG | 0.361630 | 5.1:-3172752 | None:intergenic |
| GCTTTAGGAACCTTCTTTGA+TGG | 0.364422 | 5.1:+3176412 | MS.gene024668:CDS |
| TGTTTCAGAAATCTGAACTT+TGG | 0.364662 | 5.1:-3176296 | None:intergenic |
| CAAAGCTTAGCTGTGTTTGC+TGG | 0.367423 | 5.1:+3176659 | MS.gene024668:CDS |
| GAAGTTCAAATGCCTTCAAT+TGG | 0.370322 | 5.1:+3173769 | MS.gene024668:CDS |
| ACATCTCAACAGCAGGATAA+TGG | 0.370679 | 5.1:-3176627 | None:intergenic |
| ACAAAGATGATATCCAAATC+AGG | 0.375965 | 5.1:+3173091 | MS.gene024668:CDS |
| TACTAAGAACTCGCGAGAAT+TGG | 0.379466 | 5.1:+3176347 | MS.gene024668:CDS |
| TGGCAGAATCTTTATCAGAT+TGG | 0.379730 | 5.1:+3172845 | MS.gene024668:CDS |
| GCGGTGATGCGAATCAGAAT+TGG | 0.379858 | 5.1:+3173227 | MS.gene024668:CDS |
| CATAAAAGTAAAGATGCTTT+AGG | 0.380101 | 5.1:+3176397 | MS.gene024668:CDS |
| CGGTGATGCGAATCAGAATT+GGG | 0.380736 | 5.1:+3173228 | MS.gene024668:CDS |
| CTTCCTTAGGATGTTCTGAT+AGG | 0.384102 | 5.1:-3174646 | None:intergenic |
| CTCTAATTGTTCAACCAACT+TGG | 0.385891 | 5.1:-3176044 | None:intergenic |
| ACATCTTCCTCTGTTGATAT+GGG | 0.391461 | 5.1:+3173670 | MS.gene024668:CDS |
| GAAGATTACTTTGCTTCTGC+TGG | 0.394367 | 5.1:+3176544 | MS.gene024668:CDS |
| AAATCTGGCCAGCGCAAATC+AGG | 0.395977 | 5.1:+3173463 | MS.gene024668:CDS |
| CGCAGCTACGTCTAGTGCTT+GGG | 0.397285 | 5.1:+3172925 | MS.gene024668:CDS |
| CCGCAGCTACGTCTAGTGCT+TGG | 0.400322 | 5.1:+3172924 | MS.gene024668:CDS |
| ATCCCTCGTGTATCTAATTC+AGG | 0.401971 | 5.1:+3173865 | MS.gene024668:CDS |
| CCATCATCACGTCCAACAAC+AGG | 0.401981 | 5.1:+3174701 | MS.gene024668:CDS |
| AGAAAATCCTTGGTTTCCTC+TGG | 0.410497 | 5.1:+3176112 | MS.gene024668:CDS |
| ATCAGTCTCTTTACCAGAGA+TGG | 0.417463 | 5.1:-3180481 | None:intergenic |
| GAAATTCTTTGGGCACAATC+AGG | 0.417682 | 5.1:+3179073 | MS.gene024668:CDS |
| TGATGAAAGAATTCAGTTAG+AGG | 0.419881 | 5.1:+3172616 | MS.gene024668:CDS |
| TTGAGAGAATGGTTAAAATC+TGG | 0.420168 | 5.1:+3173448 | MS.gene024668:CDS |
| TTTCAATAGTACCCTGTTGT+TGG | 0.422547 | 5.1:-3174713 | None:intergenic |
| GCTCGCAGCCTAACCCTGTC+TGG | 0.432747 | 5.1:+3179351 | MS.gene024668:CDS |
| GGATCTATTGATCCCATCTC+TGG | 0.434827 | 5.1:+3180468 | MS.gene024668:CDS |
| AATCTGAACTTTGGATCTCA+TGG | 0.436953 | 5.1:-3176287 | None:intergenic |
| TAGTATGTCCAGACAGGGTT+AGG | 0.437776 | 5.1:-3179359 | None:intergenic |
| GAGTAATGCAGTTGAACATT+TGG | 0.442426 | 5.1:+3173009 | MS.gene024668:CDS |
| CCACTTTGCCTGATTTGCGC+TGG | 0.443062 | 5.1:-3173471 | None:intergenic |
| GGTTGAACAATTAGAGTGCT+TGG | 0.444330 | 5.1:+3176051 | MS.gene024668:CDS |
| GTAATTCTATATGTGAAAGA+TGG | 0.446114 | 5.1:+3173905 | MS.gene024668:CDS |
| GGTGGATGACTCACACTCTC+GGG | 0.449991 | 5.1:+3173528 | MS.gene024668:CDS |
| AAACAAATGAAGACTGGTAT+TGG | 0.453637 | 5.1:+3173310 | MS.gene024668:CDS |
| CAATGTCTGATCTTCATCAT+AGG | 0.456778 | 5.1:+3174606 | MS.gene024668:CDS |
| TAATCTTGTGATCCAATTGA+AGG | 0.460693 | 5.1:-3173781 | None:intergenic |
| ATCAGATTGGAAATAATTCA+GGG | 0.462085 | 5.1:+3172858 | MS.gene024668:CDS |
| GTTGGACGTGATGATGGTTC+AGG | 0.462126 | 5.1:-3174695 | None:intergenic |
| GTGGGTTTGTCTGTTGCTGA+TGG | 0.464615 | 5.1:+3180033 | MS.gene024668:CDS |
| AAATATATTTAGGAAAATTG+TGG | 0.466422 | 5.1:+3173501 | MS.gene024668:CDS |
| TGATAATTCATTGAAGATCT+GGG | 0.466607 | 5.1:+3179290 | MS.gene024668:CDS |
| TCAGCTATGGGATGCTAGTA+CGG | 0.467085 | 5.1:+3177921 | MS.gene024668:intron |
| ATTGGAAATAATTCAGGGAA+TGG | 0.468351 | 5.1:+3172863 | MS.gene024668:CDS |
| CCTGTTGTTGGACGTGATGA+TGG | 0.468695 | 5.1:-3174701 | None:intergenic |
| CTCAATAAAACCTCTTCGGT+TGG | 0.468709 | 5.1:+3179315 | MS.gene024668:CDS |
| TATGCTCTCTAAGCTTTGAC+CGG | 0.469053 | 5.1:+3176518 | MS.gene024668:CDS |
| GCATGGCTTAAGAAAATCCT+TGG | 0.470022 | 5.1:+3176102 | MS.gene024668:CDS |
| GTCTGGACATACTAATGAAA+AGG | 0.473081 | 5.1:+3179368 | MS.gene024668:CDS |
| TCATGATTATTAGCAGTCTC+AGG | 0.473314 | 5.1:-3173748 | None:intergenic |
| TTTCATTAGTATGTCCAGAC+AGG | 0.474015 | 5.1:-3179365 | None:intergenic |
| AGTTTGTTTCAAGTGTGTGC+TGG | 0.474338 | 5.1:+3180517 | MS.gene024668:CDS |
| TTCTTAGTATATCTTTATCT+GGG | 0.477468 | 5.1:-3176333 | None:intergenic |
| AGACAAAATCCAGCTTCCTT+AGG | 0.483629 | 5.1:-3174659 | None:intergenic |
| ATGTATAAAAGTGTTACAAA+TGG | 0.485163 | 5.1:+3180581 | MS.gene024668:CDS |
| TTTGGCGGCTGCGGAAAGTA+AGG | 0.486066 | 5.1:+3173027 | MS.gene024668:CDS |
| AGACCAAGAAGATGCAGAAT+CGG | 0.486392 | 5.1:+3175967 | MS.gene024668:CDS |
| GGTAGCAATTTAATGTAAGA+TGG | 0.487289 | 5.1:-3173574 | None:intergenic |
| AATCCTTGGTTTCCTCTGGC+TGG | 0.487954 | 5.1:+3176116 | MS.gene024668:CDS |
| TTGGAAATAATTCAGGGAAT+GGG | 0.490364 | 5.1:+3172864 | MS.gene024668:CDS |
| AAAACAAACGGCAGGTAAAA+GGG | 0.490416 | 5.1:+3173633 | MS.gene024668:CDS |
| TAGAAGTCCCTGGTGTGTAT+TGG | 0.493208 | 5.1:+3179200 | MS.gene024668:CDS |
| GGATGTTCTGATAGGAAAGC+TGG | 0.493573 | 5.1:-3174638 | None:intergenic |
| CAAACCAGGTCATGTACATT+GGG | 0.496767 | 5.1:+3173599 | MS.gene024668:CDS |
| GGATCTCAATAAAACCTCTT+CGG | 0.497863 | 5.1:+3179311 | MS.gene024668:CDS |
| AGTTGAACATTTGGCGGCTG+CGG | 0.498441 | 5.1:+3173018 | MS.gene024668:CDS |
| TCAGAACATCCTAAGGAAGC+TGG | 0.499024 | 5.1:+3174650 | MS.gene024668:CDS |
| TGGTGGATGACTCACACTCT+CGG | 0.500502 | 5.1:+3173527 | MS.gene024668:CDS |
| GTGAACATGAAAAGAGGGCT+TGG | 0.501727 | 5.1:+3177965 | MS.gene024668:CDS |
| GAGCAAAATCAGACAAAGGC+AGG | 0.503141 | 5.1:+3173205 | MS.gene024668:CDS |
| CTTCTTGCTGCCAATTCAAG+TGG | 0.504977 | 5.1:+3180558 | MS.gene024668:CDS |
| GATATTGGGTTGATTAGTAG+TGG | 0.505458 | 5.1:+3172899 | MS.gene024668:CDS |
| TTCATTTGTATTGGAGATTG+GGG | 0.507234 | 5.1:-3176218 | None:intergenic |
| AAGATTACTTTGCTTCTGCT+GGG | 0.507710 | 5.1:+3176545 | MS.gene024668:CDS |
| TAGGAAAATTGTGGATTTGG+TGG | 0.511869 | 5.1:+3173510 | MS.gene024668:CDS |
| ACTGCAGCATCGCTGTGAAT+CGG | 0.512278 | 5.1:-3173388 | None:intergenic |
| ATGTACATGACCTGGTTTGA+TGG | 0.512767 | 5.1:-3173595 | None:intergenic |
| GTCGTAAAATCCCAATATGA+TGG | 0.518250 | 5.1:+3172677 | MS.gene024668:CDS |
| TCAAACCAGGTCATGTACAT+TGG | 0.518776 | 5.1:+3173598 | MS.gene024668:CDS |
| CGGGTCTACACACCTCGAAA+AGG | 0.518792 | 5.1:-3173999 | None:intergenic |
| ACGAGAGTGTGAGGGTTACT+GGG | 0.520316 | 5.1:+3173713 | MS.gene024668:CDS |
| CATGGGAAGCGACTTATAGT+AGG | 0.520691 | 5.1:-3180424 | None:intergenic |
| GATATTGTGCAACCTCCCTC+AGG | 0.523069 | 5.1:-3173949 | None:intergenic |
| GGTTAGGCTGCGAGCACTAG+TGG | 0.523379 | 5.1:-3179343 | None:intergenic |
| AATTCAGTTAGAGGCTGTTG+AGG | 0.529039 | 5.1:+3172625 | MS.gene024668:CDS |
| TAATTGTTCAACCAACTTGG+AGG | 0.530716 | 5.1:-3176041 | None:intergenic |
| TTACAACAAGCTTGAAGTGC+GGG | 0.531222 | 5.1:+3176453 | MS.gene024668:CDS |
| GTGAAAGATGGGAAAATAAG+TGG | 0.531333 | 5.1:+3173917 | MS.gene024668:CDS |
| AGAGGAAGATGTTACTTGCT+CGG | 0.532696 | 5.1:-3173659 | None:intergenic |
| CTGTTTGACATCTCAACAGC+AGG | 0.533413 | 5.1:-3176634 | None:intergenic |
| CTCATCAAAAGAGAAGAAGC+AGG | 0.539036 | 5.1:+3176012 | MS.gene024668:CDS |
| AATACAGTGAACATGAAAAG+AGG | 0.539565 | 5.1:+3177959 | MS.gene024668:CDS |
| CAGCTATGGGATGCTAGTAC+GGG | 0.540078 | 5.1:+3177922 | MS.gene024668:intron |
| TAATGCAGTTGAACATTTGG+CGG | 0.540996 | 5.1:+3173012 | MS.gene024668:CDS |
| TAATTCTATATGTGAAAGAT+GGG | 0.542817 | 5.1:+3173906 | MS.gene024668:CDS |
| GTGATGTTCATCGAGGAATA+CGG | 0.544130 | 5.1:+3173068 | MS.gene024668:CDS |
| AGATTATCGTAACAGATATG+AGG | 0.544583 | 5.1:+3173798 | MS.gene024668:CDS |
| TCTAGTGCTTGGGAGGATGT+TGG | 0.545873 | 5.1:+3172935 | MS.gene024668:CDS |
| ATCTTTATCTGGGTGATCTG+TGG | 0.548330 | 5.1:-3176323 | None:intergenic |
| TTTCCTATCAGAACATCCTA+AGG | 0.555337 | 5.1:+3174643 | MS.gene024668:CDS |
| GTTTCAAGTGTGTGCTGGAG+AGG | 0.558709 | 5.1:+3180522 | MS.gene024668:CDS |
| TCAGTCTCTTTACCAGAGAT+GGG | 0.559728 | 5.1:-3180480 | None:intergenic |
| TCATCAAACATCTACTGCCT+CGG | 0.561737 | 5.1:+3173970 | MS.gene024668:CDS |
| TTCGCAATCTTAGAAGTCCC+TGG | 0.562968 | 5.1:+3179190 | MS.gene024668:CDS |
| AATCAGAAACAAATGAAGAC+TGG | 0.563404 | 5.1:+3173304 | MS.gene024668:CDS |
| ACATAAACGCGATCAGAAGC+TGG | 0.563636 | 5.1:-3173172 | None:intergenic |
| CAAAGATGATATCCAAATCA+GGG | 0.570823 | 5.1:+3173092 | MS.gene024668:CDS |
| AAAAGTAAGCACTTTCAAGA+TGG | 0.572294 | 5.1:-3176264 | None:intergenic |
| TTGGAGATTGGGGACACTGT+GGG | 0.573052 | 5.1:-3176208 | None:intergenic |
| AAGGAGGGTGTAGGACCCGC+AGG | 0.573680 | 5.1:+3173046 | MS.gene024668:CDS |
| AAGTGGTATGCGAGTCCTGA+GGG | 0.573844 | 5.1:+3173934 | MS.gene024668:CDS |
| AGTAAGGGTGTTGTACGTAA+AGG | 0.574103 | 5.1:+3173148 | MS.gene024668:CDS |
| CTCAAGTTCAACATAAACAT+TGG | 0.574254 | 5.1:+3172825 | MS.gene024668:CDS |
| CATCTTCCTCTGTTGATATG+GGG | 0.576607 | 5.1:+3173671 | MS.gene024668:CDS |
| CTTGCACAAACCATCAAAGA+AGG | 0.577758 | 5.1:-3176422 | None:intergenic |
| CAAGCACTAGACGTAGCTGC+GGG | 0.585754 | 5.1:-3172923 | None:intergenic |
| AGTACAATCATCACTTCCAC+TGG | 0.586568 | 5.1:-3178025 | None:intergenic |
| AATCAGAATTGGGGTAAGAT+CGG | 0.586685 | 5.1:+3173238 | MS.gene024668:CDS |
| GAAGAGGCAGAGAGGAGGCA+TGG | 0.588049 | 5.1:+3176085 | MS.gene024668:CDS |
| AATTGGGGTAAGATCGGCGT+TGG | 0.590002 | 5.1:+3173244 | MS.gene024668:CDS |
| AGTCCCTGGTGTGTATTGGC+TGG | 0.591751 | 5.1:+3179204 | MS.gene024668:CDS |
| TGAGTAATTCGCAGATCCAA+AGG | 0.594338 | 5.1:-3179151 | None:intergenic |
| CCTCGATGAACATCACCTGC+GGG | 0.594373 | 5.1:-3173061 | None:intergenic |
| ATACAGTGAACATGAAAAGA+GGG | 0.594379 | 5.1:+3177960 | MS.gene024668:CDS |
| ACGGTGTAACATTGAGAGAA+TGG | 0.595622 | 5.1:+3173437 | MS.gene024668:CDS |
| TTCATTAGTATGTCCAGACA+GGG | 0.595786 | 5.1:-3179364 | None:intergenic |
| ATATTGGGTTGATTAGTAGT+GGG | 0.599244 | 5.1:+3172900 | MS.gene024668:CDS |
| TTTCAAGTGTGTGCTGGAGA+GGG | 0.601436 | 5.1:+3180523 | MS.gene024668:CDS |
| GCAGGGTGATGCCTCCAAGT+TGG | 0.602461 | 5.1:+3176030 | MS.gene024668:CDS |
| CAGATATAGAAGAGGCAGAG+AGG | 0.604924 | 5.1:+3176077 | MS.gene024668:CDS |
| ATTACAGGAGTTGTGTAATG+AGG | 0.606394 | 5.1:+3175928 | MS.gene024668:CDS |
| GGCGGCTGCGGAAAGTAAGG+AGG | 0.607941 | 5.1:+3173030 | MS.gene024668:CDS |
| GCTAGAAAATCGCATAGTGA+TGG | 0.608608 | 5.1:+3172983 | MS.gene024668:CDS |
| CTTGGAATCAGATATAGAAG+AGG | 0.610271 | 5.1:+3176069 | MS.gene024668:CDS |
| ATGCTCTCTAAGCTTTGACC+GGG | 0.612774 | 5.1:+3176519 | MS.gene024668:CDS |
| AGCTACGTCTAGTGCTTGGG+AGG | 0.615576 | 5.1:+3172928 | MS.gene024668:CDS |
| AAGCAAAGTAATCTTCATCC+CGG | 0.620471 | 5.1:-3176537 | None:intergenic |
| AGACTACGACGGTGTAGTGA+AGG | 0.621641 | 5.1:+3176714 | MS.gene024668:CDS |
| GAGATTGGGGACACTGTGGG+CGG | 0.622277 | 5.1:-3176205 | None:intergenic |
| CCAGCGCAAATCAGGCAAAG+TGG | 0.623535 | 5.1:+3173471 | MS.gene024668:CDS |
| TTGTGTGAAGTAATTGGCAT+GGG | 0.625244 | 5.1:-3180441 | None:intergenic |
| TCCAAAGGCAAGCAAATGAG+AGG | 0.625566 | 5.1:-3179136 | None:intergenic |
| GCGGAAAGTAAGGAGGGTGT+AGG | 0.626048 | 5.1:+3173037 | MS.gene024668:CDS |
| GTCTACACACCTCGAAAAGG+AGG | 0.626294 | 5.1:-3173996 | None:intergenic |
| AAAATTTGACGAGAGTGTGA+GGG | 0.626614 | 5.1:+3173705 | MS.gene024668:CDS |
| GTGGATGACTCACACTCTCG+GGG | 0.627042 | 5.1:+3173529 | MS.gene024668:CDS |
| ATGGCCAGCCAATACACACC+AGG | 0.627800 | 5.1:-3179208 | None:intergenic |
| TAGAGAGCAAAATCAGACAA+AGG | 0.631176 | 5.1:+3173201 | MS.gene024668:CDS |
| CCAAGCACTAGACGTAGCTG+CGG | 0.631837 | 5.1:-3172924 | None:intergenic |
| CACTTGAAACAAACTGACCA+TGG | 0.631982 | 5.1:-3180509 | None:intergenic |
| AGCTAATAACTCCGGAAACG+AGG | 0.632584 | 5.1:-3172963 | None:intergenic |
| TCCTCGATGAACATCACCTG+CGG | 0.634907 | 5.1:-3173062 | None:intergenic |
| CTTGTGTGAAGTAATTGGCA+TGG | 0.647108 | 5.1:-3180442 | None:intergenic |
| ATATAGAAGAGGCAGAGAGG+AGG | 0.647655 | 5.1:+3176080 | MS.gene024668:CDS |
| ATTGGAGATTGGGGACACTG+TGG | 0.648633 | 5.1:-3176209 | None:intergenic |
| TCATCAAAAGAGAAGAAGCA+GGG | 0.652591 | 5.1:+3176013 | MS.gene024668:CDS |
| CATAGCTTACAGCTTTACGA+TGG | 0.656922 | 5.1:-3179227 | None:intergenic |
| GCGGCTGCGGAAAGTAAGGA+GGG | 0.659078 | 5.1:+3173031 | MS.gene024668:CDS |
| TAAATTGCTACCATCAAACC+AGG | 0.660402 | 5.1:+3173585 | MS.gene024668:CDS |
| CTTGGACCCCATATCAACAG+AGG | 0.661094 | 5.1:-3173677 | None:intergenic |
| CTGCCAGCCAGAGGAAACCA+AGG | 0.661718 | 5.1:-3176119 | None:intergenic |
| TGCCCTACAAAATTTGCCAG+TGG | 0.662507 | 5.1:+3178009 | MS.gene024668:CDS |
| CATCATCACGTCCAACAACA+GGG | 0.666527 | 5.1:+3174702 | MS.gene024668:CDS |
| AGTGGATGAACCAACCGAAG+AGG | 0.670752 | 5.1:-3179325 | None:intergenic |
| TACACCGTCGTAGTCTGTAG+AGG | 0.672028 | 5.1:-3176707 | None:intergenic |
| TACAACAAGCTTGAAGTGCG+GGG | 0.673879 | 5.1:+3176454 | MS.gene024668:CDS |
| GTAACCCAATGTACATGACC+TGG | 0.681232 | 5.1:-3173603 | None:intergenic |
| GTTACAACAAGCTTGAAGTG+CGG | 0.682697 | 5.1:+3176452 | MS.gene024668:CDS |
| GCTGATGGATATATTGCATG+CGG | 0.691894 | 5.1:+3180048 | MS.gene024668:CDS |
| GTAATTGTTCTGCCAGCCAG+AGG | 0.692765 | 5.1:-3176128 | None:intergenic |
| GGTGATGCGAATCAGAATTG+GGG | 0.694044 | 5.1:+3173229 | MS.gene024668:CDS |
| ATGATTGTACTGTCAAGCTG+TGG | 0.694220 | 5.1:+3178037 | MS.gene024668:CDS |
| CAAAATCAGACAAAGGCAGG+CGG | 0.694575 | 5.1:+3173208 | MS.gene024668:CDS |
| TAATAACTCCGGAAACGAGG+TGG | 0.696527 | 5.1:-3172960 | None:intergenic |
| TGTTCTGATAGGAAAGCTGG+AGG | 0.696572 | 5.1:-3174635 | None:intergenic |
| TGACCTGAATTAGATACACG+AGG | 0.698186 | 5.1:-3173868 | None:intergenic |
| GACCTGAATTAGATACACGA+GGG | 0.702403 | 5.1:-3173867 | None:intergenic |
| TGGTATGCGAGTCCTGAGGG+AGG | 0.704127 | 5.1:+3173937 | MS.gene024668:CDS |
| TAAGTGGTATGCGAGTCCTG+AGG | 0.705242 | 5.1:+3173933 | MS.gene024668:CDS |
| TGGCCAGCCAATACACACCA+GGG | 0.709578 | 5.1:-3179207 | None:intergenic |
| TCTAGCACGACTGAATGTGA+CGG | 0.713007 | 5.1:+3173418 | MS.gene024668:CDS |
| CCCGCAGGTGATGTTCATCG+AGG | 0.729473 | 5.1:+3173061 | MS.gene024668:CDS |
| CCTCGAAAAGGAGGACACCG+AGG | 0.731822 | 5.1:-3173987 | None:intergenic |
| TCTAATGTATCAGTGAACCG+TGG | 0.736096 | 5.1:+3173346 | MS.gene024668:CDS |
| CTTGCCTCTACAGACTACGA+CGG | 0.736845 | 5.1:+3176703 | MS.gene024668:CDS |
| CAAGCTGTGGAGCATCAGTG+AGG | 0.737737 | 5.1:+3178050 | MS.gene024668:CDS |
| AAAGAGACTGATGATGACCA+TGG | 0.778100 | 5.1:+3180492 | MS.gene024668:CDS |
| ATGCGGTTCAGAATCAAACG+AGG | 0.781275 | 5.1:+3180065 | MS.gene024668:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 3172599 | 3180608 | 3172599 | ID=MS.gene024668 |
| chr5.1 | mRNA | 3172599 | 3180608 | 3172599 | ID=MS.gene024668.t1;Parent=MS.gene024668 |
| chr5.1 | exon | 3172599 | 3174008 | 3172599 | ID=MS.gene024668.t1.exon1;Parent=MS.gene024668.t1 |
| chr5.1 | CDS | 3172599 | 3174008 | 3172599 | ID=cds.MS.gene024668.t1;Parent=MS.gene024668.t1 |
| chr5.1 | exon | 3174566 | 3174723 | 3174566 | ID=MS.gene024668.t1.exon2;Parent=MS.gene024668.t1 |
| chr5.1 | CDS | 3174566 | 3174723 | 3174566 | ID=cds.MS.gene024668.t1;Parent=MS.gene024668.t1 |
| chr5.1 | exon | 3175898 | 3176735 | 3175898 | ID=MS.gene024668.t1.exon3;Parent=MS.gene024668.t1 |
| chr5.1 | CDS | 3175898 | 3176735 | 3175898 | ID=cds.MS.gene024668.t1;Parent=MS.gene024668.t1 |
| chr5.1 | exon | 3177925 | 3178071 | 3177925 | ID=MS.gene024668.t1.exon4;Parent=MS.gene024668.t1 |
| chr5.1 | CDS | 3177925 | 3178071 | 3177925 | ID=cds.MS.gene024668.t1;Parent=MS.gene024668.t1 |
| chr5.1 | exon | 3179072 | 3179389 | 3179072 | ID=MS.gene024668.t1.exon5;Parent=MS.gene024668.t1 |
| chr5.1 | CDS | 3179072 | 3179389 | 3179072 | ID=cds.MS.gene024668.t1;Parent=MS.gene024668.t1 |
| chr5.1 | exon | 3180027 | 3180086 | 3180027 | ID=MS.gene024668.t1.exon6;Parent=MS.gene024668.t1 |
| chr5.1 | CDS | 3180027 | 3180086 | 3180027 | ID=cds.MS.gene024668.t1;Parent=MS.gene024668.t1 |
| chr5.1 | exon | 3180417 | 3180608 | 3180417 | ID=MS.gene024668.t1.exon7;Parent=MS.gene024668.t1 |
| chr5.1 | CDS | 3180417 | 3180608 | 3180417 | ID=cds.MS.gene024668.t1;Parent=MS.gene024668.t1 |
| Gene Sequence |
| Protein sequence |
